BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780688|ref|YP_003065101.1| putative flagellar motor
switch protein [Candidatus Liberibacter asiaticus str. psy62]
         (147 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040365|gb|ACT57161.1| putative flagellar motor switch protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 147

 Score =  290 bits (742), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
           MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN
Sbjct: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK
Sbjct: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
           IAKGEITIMEEDDTHFGVRVIEILNAQ
Sbjct: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147


>gi|315121855|ref|YP_004062344.1| putative flagellar motor switch protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495257|gb|ADR51856.1| putative flagellar motor switch protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 136

 Score =  187 bits (476), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/136 (73%), Positives = 114/136 (83%), Gaps = 8/136 (5%)

Query: 20  MHIDNPLQDTNVSSPT---NNSEMLIQ-----KNDVDNISEPISSDSNNILEKSTDNFDL 71
           MHID+PLQD + S      NNS +        +ND+D+ SE ISS+SNNI EKS+DN DL
Sbjct: 1   MHIDSPLQDHDQSEECTLKNNSHIFQNTTENPQNDLDDSSEKISSNSNNIFEKSSDNIDL 60

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           IMNIPV +QIILGSCCMQISNLVNLSKGDVITLDKRVGE+VDITINNQKIAKGEITIME+
Sbjct: 61  IMNIPVNIQIILGSCCMQISNLVNLSKGDVITLDKRVGEAVDITINNQKIAKGEITIMED 120

Query: 132 DDTHFGVRVIEILNAQ 147
           DDTHFGVRVIE+LN++
Sbjct: 121 DDTHFGVRVIELLNSK 136


>gi|222084856|ref|YP_002543385.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
 gi|221722304|gb|ACM25460.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
          Length = 179

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 64/78 (82%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLIM+IP+ +QI+LGS  MQ+S L+NL++G +I LDKR+GE V+IT+N + I +GEIT
Sbjct: 98  NLDLIMDIPIDVQIVLGSSRMQVSGLMNLTEGAIIALDKRIGEPVEITVNGRCIGRGEIT 157

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++E DDT FG+++IE+ N
Sbjct: 158 VLEHDDTRFGIKLIELSN 175


>gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 195

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 67/80 (83%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NFDLIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT
Sbjct: 114 NFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 173

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++ DDT FGV++IE+L+ +
Sbjct: 174 VLDNDDTRFGVKLIEVLSTK 193


>gi|241203097|ref|YP_002974193.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856987|gb|ACS54654.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 194

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 67/80 (83%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NFDLIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT
Sbjct: 113 NFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 172

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++ DDT FGV++IE+L+ +
Sbjct: 173 VLDNDDTRFGVKLIEVLSTK 192


>gi|86356303|ref|YP_468195.1| flagellar motor switch protein [Rhizobium etli CFN 42]
 gi|86280405|gb|ABC89468.1| flagellar motor switch protein [Rhizobium etli CFN 42]
          Length = 214

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 69/82 (84%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T NF+LIM+IP+ +QI+LG+  MQ+S+L+NL++G  I LDK++GE V+I +N ++IA+GE
Sbjct: 131 TSNFELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGEPVEIMVNGRRIARGE 190

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           IT+++ DDT FGV++IE+L+ +
Sbjct: 191 ITVLDNDDTRFGVKLIEVLSTK 212


>gi|218508216|ref|ZP_03506094.1| flagellar motor switch protein [Rhizobium etli Brasil 5]
          Length = 195

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 68/82 (82%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T NF+LIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GE
Sbjct: 112 TSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGE 171

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           IT+++ DDT FGV++IE+L+ +
Sbjct: 172 ITVLDNDDTRFGVKLIEVLSTK 193


>gi|190890354|ref|YP_001976896.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
 gi|190695633|gb|ACE89718.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
          Length = 195

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 68/82 (82%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T NF+LIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GE
Sbjct: 112 TSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGE 171

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           IT+++ DDT FGV++IE+L+ +
Sbjct: 172 ITVLDNDDTRFGVKLIEVLSTK 193


>gi|222147562|ref|YP_002548519.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
 gi|221734550|gb|ACM35513.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
          Length = 220

 Score =  100 bits (250), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 65/80 (81%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLIM+IP+ +QI+LGS  M +S L+NL +G +I LDK++GE V+I +N ++IA+GEIT
Sbjct: 139 NLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEIMVNGRRIARGEIT 198

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E DDT FGV++IE+++ +
Sbjct: 199 VLENDDTRFGVKLIEVMSTK 218


>gi|209547919|ref|YP_002279836.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533675|gb|ACI53610.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 195

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 67/80 (83%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF+LIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT
Sbjct: 114 NFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 173

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++ DDT FGV++IE+L+ +
Sbjct: 174 VLDNDDTRFGVKLIEVLSTK 193


>gi|218679322|ref|ZP_03527219.1| putative flagellar motor switch protein [Rhizobium etli CIAT 894]
          Length = 178

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 67/80 (83%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF+LIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT
Sbjct: 97  NFELIMDIPIDVQIMLGTNRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 156

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++ DDT FGV++IE+L+ +
Sbjct: 157 VLDNDDTRFGVKLIEVLSTK 176


>gi|325291949|ref|YP_004277813.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
 gi|45479284|gb|AAS66686.1| FliN [Agrobacterium sp. H13-3]
 gi|325059802|gb|ADY63493.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
          Length = 179

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 67/82 (81%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +DN DLIM+IP+ +QI+LG+  M +S L++L +G  I LD+++GE V+I +N ++IA+GE
Sbjct: 96  SDNMDLIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGE 155

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           IT++E+DDT FGV++IE+++ +
Sbjct: 156 ITVLEDDDTRFGVKLIEVMSTR 177


>gi|159184368|ref|NP_353589.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
           C58]
 gi|3913685|sp|Q57259|FLIN_AGRT5 RecName: Full=Flagellar motor switch protein FliN
 gi|39092|emb|CAA46543.1| FliN homologue [Agrobacterium tumefaciens]
 gi|1480839|gb|AAC45323.1| FliN [Agrobacterium tumefaciens]
 gi|2459704|gb|AAB71780.1| FliN [Agrobacterium tumefaciens]
 gi|159139682|gb|AAK86374.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
           C58]
          Length = 179

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 67/82 (81%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           ++N ++IM+IP+ +QI+LG+  M +S L++L +G  I LD+++GE V+I +N ++IA+GE
Sbjct: 96  SENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGE 155

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           IT++E+DDT FGV++IE+L+ +
Sbjct: 156 ITVLEDDDTRFGVKLIEVLSTR 177


>gi|319781691|ref|YP_004141167.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167579|gb|ADV11117.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 128

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 61/80 (76%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S+ N  +IMNIPV +QIILGS  M +S+L+ L KG  + L++R+GE VD+ +N +KIA+G
Sbjct: 43  SSANSSVIMNIPVDIQIILGSTEMPVSDLMALQKGSTVALNRRIGEPVDVVVNGRKIARG 102

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           EIT++E D + FG+R+ EI+
Sbjct: 103 EITVLESDPSRFGIRLTEII 122


>gi|163758005|ref|ZP_02165093.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
 gi|162284294|gb|EDQ34577.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
          Length = 241

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 59/77 (76%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           DL+M IPV +QIILGS  M +S+L+ LS+G  I LD+++GE V+I +N + I +GEIT++
Sbjct: 159 DLVMGIPVDVQIILGSSRMAVSSLMELSEGATIALDRKIGEPVEIMVNGKMIGRGEITVL 218

Query: 130 EEDDTHFGVRVIEILNA 146
           + DDT F VR+IE++ A
Sbjct: 219 DSDDTKFAVRIIEVIGA 235


>gi|254473327|ref|ZP_05086724.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
 gi|211957443|gb|EEA92646.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
          Length = 138

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 59/80 (73%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D ++ IPV MQ++LGS  M +++L+ L +G VI LD RVGE VDI +N + +A+GEI 
Sbjct: 55  NLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVARGEIV 114

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E+D++ FGV + EI+ A+
Sbjct: 115 VVEDDNSRFGVSLTEIVGAK 134


>gi|150395475|ref|YP_001325942.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
 gi|150026990|gb|ABR59107.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
          Length = 215

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 61/76 (80%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLIM+IP+ +QI+LG+  MQ+S+L+NL++G  I LD+++GE V+I +N + I +GEIT
Sbjct: 135 NLDLIMDIPIDIQIVLGTSRMQVSSLMNLTEGATIALDRKIGEPVEIMVNGRVIGRGEIT 194

Query: 128 IMEEDDTHFGVRVIEI 143
           ++E D T FGV+++EI
Sbjct: 195 VLEGDVTRFGVKLLEI 210


>gi|260466629|ref|ZP_05812817.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
           WSM2075]
 gi|259029635|gb|EEW30923.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
           WSM2075]
          Length = 128

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 59/77 (76%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +IMNIPV +QIILGS  M +S+L+ L KG  + L++R+GE VD+ +N +KIA+GEIT
Sbjct: 46  NSSVIMNIPVDVQIILGSTEMAVSDLMALQKGSTVALNRRIGEPVDVVVNGRKIARGEIT 105

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++E D + FG+R+ EI+
Sbjct: 106 VLESDPSRFGIRLTEII 122


>gi|319409197|emb|CBI82841.1| Flagellar motor switch protein fliY [Bartonella schoenbuchensis R1]
          Length = 165

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 62/78 (79%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +LIM+IPV++QI+LGS  M ++NL++L +G VITLDK++G+ +DI +N + IA+GE+ 
Sbjct: 87  NPELIMSIPVEVQIVLGSTTMPVANLMDLGRGSVITLDKQIGDPIDIIVNGRIIARGEVI 146

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++E+D + FGV + E++ 
Sbjct: 147 VLEDDPSRFGVSLTEVMG 164


>gi|319405390|emb|CBI79009.1| Flagellar motor switch protein fliY [Bartonella sp. AR 15-3]
          Length = 170

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 70/94 (74%), Gaps = 3/94 (3%)

Query: 55  SSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           SS ++ + + + D   N +LIM+IPV++Q++LGS  M +S L++L +G VITLDK++G+ 
Sbjct: 76  SSGASKVPQNAGDTSSNTELIMSIPVEVQVVLGSTTMPVSTLMDLGRGAVITLDKQIGDP 135

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +DI +N + IA+GE+ ++E+D + FGV + EI++
Sbjct: 136 IDIVVNGRVIARGEVIVLEDDPSRFGVSLTEIID 169


>gi|13472566|ref|NP_104133.1| flagellar motor switch protein FliN [Mesorhizobium loti MAFF303099]
 gi|14023312|dbj|BAB49919.1| flagellar motor switch protein; FliN [Mesorhizobium loti
           MAFF303099]
          Length = 128

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 60/77 (77%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N ++IMNIPV +QIILGS  M +++L+ L KG  + L++R+GE VD+ +N +KIA+GEIT
Sbjct: 46  NSNVIMNIPVDVQIILGSTEMAVADLMALQKGSTVALNRRIGEPVDVVVNGRKIARGEIT 105

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++E D + FG+R+ EI+
Sbjct: 106 VLESDPSRFGIRLTEII 122


>gi|118589948|ref|ZP_01547352.1| probable flagellar motor switch protein [Stappia aggregata IAM
           12614]
 gi|118437445|gb|EAV44082.1| probable flagellar motor switch protein [Stappia aggregata IAM
           12614]
          Length = 130

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 60/80 (75%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D I+ IPV +Q++LGS  M +SNL+ L +G VI L+ RVGE +DI +N + IA+GE+ 
Sbjct: 45  NLDTILGIPVNIQVVLGSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVV 104

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E+D++ FGV + EI++AQ
Sbjct: 105 VVEDDNSRFGVSLTEIISAQ 124


>gi|2916786|emb|CAA11953.1| flagellar C-ring protein [Sinorhizobium meliloti]
          Length = 198

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 60/78 (76%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N DLIM+IP+ +QI+LG+  MQ+S L+ L++G  I LD+++GE V+I +N + I +GE
Sbjct: 116 TANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGE 175

Query: 126 ITIMEEDDTHFGVRVIEI 143
           IT++E D T FGV+++EI
Sbjct: 176 ITVLEGDVTRFGVKLLEI 193


>gi|227820848|ref|YP_002824818.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
           NGR234]
 gi|227339847|gb|ACP24065.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
           NGR234]
          Length = 210

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 59/76 (77%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLIM+IP+ +QI+LG+  MQ+S L+ L++G  I LD+++GE V+I +N + I +GEIT
Sbjct: 130 NMDLIMDIPIDVQIVLGTSRMQVSGLMGLTEGATIALDRKIGEPVEIMVNGRVIGRGEIT 189

Query: 128 IMEEDDTHFGVRVIEI 143
           ++E D T FGV++IEI
Sbjct: 190 VLEGDVTRFGVKLIEI 205


>gi|15964405|ref|NP_384758.1| flagellar motor switch protein [Sinorhizobium meliloti 1021]
 gi|15073582|emb|CAC45224.1| Flagellar motor switch protein [Sinorhizobium meliloti 1021]
          Length = 210

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 60/78 (76%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N DLIM+IP+ +QI+LG+  MQ+S L+ L++G  I LD+++GE V+I +N + I +GE
Sbjct: 128 TANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGE 187

Query: 126 ITIMEEDDTHFGVRVIEI 143
           IT++E D T FGV+++EI
Sbjct: 188 ITVLEGDVTRFGVKLLEI 205


>gi|307311547|ref|ZP_07591188.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
 gi|307318902|ref|ZP_07598333.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
 gi|17380371|sp|O54245|FLIN_RHIME RecName: Full=Flagellar motor switch protein FliN
 gi|306895316|gb|EFN26071.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
 gi|306899564|gb|EFN30193.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
          Length = 198

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 60/78 (76%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N DLIM+IP+ +QI+LG+  MQ+S L+ L++G  I LD+++GE V+I +N + I +GE
Sbjct: 116 TANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGE 175

Query: 126 ITIMEEDDTHFGVRVIEI 143
           IT++E D T FGV+++EI
Sbjct: 176 ITVLEGDVTRFGVKLLEI 193


>gi|254503358|ref|ZP_05115509.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
 gi|222439429|gb|EEE46108.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
          Length = 130

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 2/108 (1%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           I+  D  N +   + D  N  +   D  N D I+ IPV +Q++LGS  M +SNL+ L +G
Sbjct: 17  IKTADAANFARVEAPDKKNAGDTMGDDRNLDTILGIPVNIQVVLGSATMLVSNLLKLGRG 76

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            VI L+ RVGE +DI +N + IA+GE+ ++E+D++ FGV + EI+++Q
Sbjct: 77  AVIPLNHRVGEPIDIVVNGRVIARGEVVVVEDDNSRFGVSLTEIISSQ 124


>gi|170748132|ref|YP_001754392.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654654|gb|ACB23709.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
          Length = 130

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 58/81 (71%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N D I+ IPV MQ++LGS  M +SNL+ L +G ++ LD RVGE VD+ +N + IA+G
Sbjct: 42  SGRNLDSILRIPVLMQVVLGSATMPVSNLMKLGRGAIVPLDHRVGEPVDVVVNGRVIARG 101

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D++ FGV + EI+ 
Sbjct: 102 EVVVVEDDNSRFGVSLTEIVG 122


>gi|121602197|ref|YP_989410.1| flagellar motor switch protein fliY [Bartonella bacilliformis
           KC583]
 gi|120614374|gb|ABM44975.1| flagellar motor switch protein fliY [Bartonella bacilliformis
           KC583]
          Length = 139

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 66/81 (81%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           +++N +L+M+IPV++QI+LGS  M ++NL+NL +G VITL+K++G+ +DI +N + IA+G
Sbjct: 58  ASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDIVVNGRIIARG 117

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + E+++
Sbjct: 118 EVIVLEDDSSRFGVSLTEVID 138


>gi|17989457|ref|NP_542090.1| flagellar motor switch protein FLIN [Brucella melitensis bv. 1 str.
           16M]
 gi|62317076|ref|YP_222929.1| flagellar motor switch protein FliN [Brucella abortus bv. 1 str.
           9-941]
 gi|83269069|ref|YP_418360.1| flagellar motor switch FliN [Brucella melitensis biovar Abortus
           2308]
 gi|161620209|ref|YP_001594095.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
 gi|225685984|ref|YP_002733956.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
           23457]
 gi|254731810|ref|ZP_05190388.1| Flagellar motor switch FliN protein [Brucella abortus bv. 4 str.
           292]
 gi|256014913|ref|YP_003104922.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
 gi|17985336|gb|AAL54354.1| flagellar motor switch protein flin [Brucella melitensis bv. 1 str.
           16M]
 gi|62197269|gb|AAX75568.1| flagellar motor switch protein FliN, hypothetical [Brucella abortus
           bv. 1 str. 9-941]
 gi|82939343|emb|CAJ12288.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Brucella melitensis biovar
           Abortus 2308]
 gi|161337020|gb|ABX63324.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
 gi|225642089|gb|ACO02002.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
           23457]
 gi|255997573|gb|ACU49260.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
          Length = 106

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 59/81 (72%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DLIM IPV +Q++LG   M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 25  SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 84

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + EI+ 
Sbjct: 85  EVIVLEDDSSRFGVSLTEIIG 105


>gi|218663132|ref|ZP_03519062.1| putative flagellar motor switch protein [Rhizobium etli IE4771]
          Length = 77

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 62/75 (82%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           M+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT+++ D
Sbjct: 1   MDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDND 60

Query: 133 DTHFGVRVIEILNAQ 147
           DT FGV++IE+L+ +
Sbjct: 61  DTRFGVKLIEVLSTK 75


>gi|189022343|ref|YP_001932084.1| Flagellar motor switch FliN protein [Brucella abortus S19]
 gi|225628599|ref|ZP_03786633.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
 gi|237816638|ref|ZP_04595630.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
 gi|254691435|ref|ZP_05154689.1| Flagellar motor switch FliN protein [Brucella abortus bv. 6 str.
           870]
 gi|254695266|ref|ZP_05157094.1| Flagellar motor switch FliN protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698365|ref|ZP_05160193.1| Flagellar motor switch FliN protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699434|ref|ZP_05161262.1| Flagellar motor switch FliN protein [Brucella suis bv. 5 str. 513]
 gi|254706319|ref|ZP_05168147.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
           M163/99/10]
 gi|254711389|ref|ZP_05173200.1| Flagellar motor switch FliN protein [Brucella pinnipedialis B2/94]
 gi|254711988|ref|ZP_05173799.1| Flagellar motor switch FliN protein [Brucella ceti M644/93/1]
 gi|254715058|ref|ZP_05176869.1| Flagellar motor switch FliN protein [Brucella ceti M13/05/1]
 gi|254720634|ref|ZP_05182445.1| Flagellar motor switch FliN protein [Brucella sp. 83/13]
 gi|256029981|ref|ZP_05443595.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
           M292/94/1]
 gi|256043046|ref|ZP_05445991.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111968|ref|ZP_05452919.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256621|ref|ZP_05462157.1| Flagellar motor switch FliN protein [Brucella abortus bv. 9 str.
           C68]
 gi|256262890|ref|ZP_05465422.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544316|ref|ZP_05820137.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
 gi|260564278|ref|ZP_05834763.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260568541|ref|ZP_05839010.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
 gi|260757054|ref|ZP_05869402.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
           870]
 gi|260759575|ref|ZP_05871923.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
           292]
 gi|260762819|ref|ZP_05875151.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882864|ref|ZP_05894478.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
           C68]
 gi|261215631|ref|ZP_05929912.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
           Tulya]
 gi|261216765|ref|ZP_05931046.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
 gi|261313766|ref|ZP_05952963.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M163/99/10]
 gi|261318995|ref|ZP_05958192.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
 gi|261319632|ref|ZP_05958829.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
 gi|261749885|ref|ZP_05993594.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
 gi|265985678|ref|ZP_06098413.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
 gi|265987002|ref|ZP_06099559.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M292/94/1]
 gi|265989484|ref|ZP_06102041.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993417|ref|ZP_06105974.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
           Ether]
 gi|294853147|ref|ZP_06793819.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
           07-0026]
 gi|297249978|ref|ZP_06933679.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
           str. B3196]
 gi|306837358|ref|ZP_07470237.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
 gi|306841072|ref|ZP_07473795.1| flagellar motor switch protein FliN [Brucella sp. BO2]
 gi|306846303|ref|ZP_07478864.1| flagellar motor switch protein FliN [Brucella sp. BO1]
 gi|189020917|gb|ACD73638.1| Flagellar motor switch FliN protein [Brucella abortus S19]
 gi|225616445|gb|EEH13493.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
 gi|237787451|gb|EEP61667.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
 gi|260097587|gb|EEW81461.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
 gi|260151921|gb|EEW87014.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155206|gb|EEW90287.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
 gi|260669893|gb|EEX56833.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
           292]
 gi|260673240|gb|EEX60061.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260677162|gb|EEX63983.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
           870]
 gi|260872392|gb|EEX79461.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
           C68]
 gi|260917238|gb|EEX84099.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
           Tulya]
 gi|260921854|gb|EEX88422.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
 gi|261292322|gb|EEX95818.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
 gi|261298218|gb|EEY01715.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
 gi|261302792|gb|EEY06289.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M163/99/10]
 gi|261739638|gb|EEY27564.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
 gi|262764287|gb|EEZ10319.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000153|gb|EEZ12843.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092727|gb|EEZ16936.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264659199|gb|EEZ29460.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M292/94/1]
 gi|264664270|gb|EEZ34531.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
 gi|294818802|gb|EFG35802.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
           07-0026]
 gi|297173847|gb|EFH33211.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
           str. B3196]
 gi|306273298|gb|EFM55167.1| flagellar motor switch protein FliN [Brucella sp. BO1]
 gi|306288910|gb|EFM60213.1| flagellar motor switch protein FliN [Brucella sp. BO2]
 gi|306407550|gb|EFM63750.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
 gi|326410310|gb|ADZ67374.1| Flagellar motor switch FliN protein [Brucella melitensis M28]
 gi|326553603|gb|ADZ88242.1| Flagellar motor switch FliN protein [Brucella melitensis M5-90]
          Length = 115

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 59/81 (72%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DLIM IPV +Q++LG   M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34  SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + EI+ 
Sbjct: 94  EVIVLEDDSSRFGVSLTEIIG 114


>gi|319406966|emb|CBI80603.1| Flagellar motor switch protein fliY [Bartonella sp. 1-1C]
          Length = 170

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 78/117 (66%), Gaps = 4/117 (3%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           TN S+P+  +E    K  +       +S++      ++ N +LIM+IPV++Q++LGS  M
Sbjct: 57  TNPSTPSFGAEAA-GKTTIGGTG---ASNAPKNPSDTSSNTELIMSIPVEVQVVLGSTTM 112

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            ++ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FGV + EI++
Sbjct: 113 PVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGVSLTEIID 169


>gi|148558477|ref|YP_001257190.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
           25840]
 gi|148369762|gb|ABQ62634.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
           25840]
          Length = 115

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 59/81 (72%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DLIM IPV +Q++LG   M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34  SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + EI+ 
Sbjct: 94  EVIVLEDDSSRFGVSLTEIIG 114


>gi|27381990|ref|NP_773519.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
 gi|27355160|dbj|BAC52144.1| fliN [Bradyrhizobium japonicum USDA 110]
          Length = 124

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 57/78 (73%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D I+ IPV MQ++LGS  + ++NL+ L +G V+ LD RVGE VD+ +N + +A+GE+ 
Sbjct: 40  NVDAILRIPVTMQVVLGSATIPVANLMKLGRGAVVPLDHRVGEPVDVVVNGRIVARGEVV 99

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++EED++ FGV + EI+ 
Sbjct: 100 VVEEDNSRFGVSLTEIVG 117


>gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 109

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 57/78 (73%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D I+ IPV +Q++LGS  M +SNL+ L +G VI LD RVGE VDI +N + IA+GE+ 
Sbjct: 26  NLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVIPLDHRVGEPVDIVVNGRVIARGEVV 85

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++E+D++ FGV + EI+ 
Sbjct: 86  VVEDDNSRFGVSLTEIVG 103


>gi|188579886|ref|YP_001923331.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
 gi|179343384|gb|ACB78796.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
          Length = 108

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 57/78 (73%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D I+ IPV MQ++LGS  M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI 
Sbjct: 23  NLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIV 82

Query: 128 IMEEDDTHFGVRVIEILN 145
           I+EED++ FGV + E++ 
Sbjct: 83  IVEEDNSRFGVSLTEVVG 100


>gi|319403949|emb|CBI77537.1| Flagellar motor switch protein fliY [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 170

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 64/81 (79%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           ++ N +LIM+IPV++Q++LGS  M ++ L++L +G VITLDK++G+ +DI +N + IA+G
Sbjct: 89  TSSNTELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARG 148

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + EI++
Sbjct: 149 EVIVLEDDPSRFGVSLTEIID 169


>gi|256158145|ref|ZP_05456061.1| Flagellar motor switch FliN protein [Brucella ceti M490/95/1]
 gi|256252904|ref|ZP_05458440.1| Flagellar motor switch FliN protein [Brucella ceti B1/94]
 gi|261219992|ref|ZP_05934273.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
 gi|265996663|ref|ZP_06109220.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
 gi|260918576|gb|EEX85229.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
 gi|262550960|gb|EEZ07121.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
          Length = 98

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 59/81 (72%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DLIM IPV +Q++LG   M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 17  SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 76

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + EI+ 
Sbjct: 77  EVIVLEDDSSRFGVSLTEIIG 97


>gi|256059634|ref|ZP_05449831.1| Flagellar motor switch FliN protein [Brucella neotomae 5K33]
 gi|261323604|ref|ZP_05962801.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
 gi|261299584|gb|EEY03081.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
          Length = 115

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 59/81 (72%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DLIM IPV +Q++LG   M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34  SKPNLDLIMGIPVDVQMVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + EI+ 
Sbjct: 94  EVIVLEDDSSRFGVSLTEIIG 114


>gi|239834453|ref|ZP_04682781.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
           3301]
 gi|239822516|gb|EEQ94085.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
           3301]
          Length = 115

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 59/81 (72%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N +LIM IPV +Q++LG   M ++NL+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34  SKPNLELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + EI+ 
Sbjct: 94  EVIVLEDDSSRFGVSLTEIIG 114


>gi|163850081|ref|YP_001638124.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218528684|ref|YP_002419500.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240137214|ref|YP_002961683.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           AM1]
 gi|254559226|ref|YP_003066321.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           DM4]
 gi|163661686|gb|ABY29053.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218520987|gb|ACK81572.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240007180|gb|ACS38406.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           AM1]
 gi|254266504|emb|CAX22268.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           DM4]
          Length = 108

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 57/78 (73%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D I+ IPV MQ++LGS  M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI 
Sbjct: 23  NLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIV 82

Query: 128 IMEEDDTHFGVRVIEILN 145
           I+EED++ FGV + E++ 
Sbjct: 83  IVEEDNSRFGVSLTEVVG 100


>gi|153011535|ref|YP_001372749.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
           49188]
 gi|151563423|gb|ABS16920.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
           49188]
          Length = 115

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 59/81 (72%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N +LIM IPV +Q++LG   M ++NL+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34  SKPNLELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + EI+ 
Sbjct: 94  EVIVLEDDSSRFGVSLTEIIG 114


>gi|170741400|ref|YP_001770055.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
 gi|168195674|gb|ACA17621.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
          Length = 125

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 57/78 (73%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D ++ IPV +Q++LGS  M ++NL+ L +G ++ LD RVGE VDI +N + IA+GE+ 
Sbjct: 41  NLDSVLRIPVLIQVVLGSATMPVANLMKLGRGAIVPLDHRVGEPVDIMVNGRVIARGEVV 100

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++EED++ FGV + EI+ 
Sbjct: 101 VVEEDNSRFGVSLTEIVG 118


>gi|319898626|ref|YP_004158719.1| flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
 gi|319402590|emb|CBI76135.1| Flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
          Length = 171

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 69/91 (75%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +++N    ++ N +LIM+IPV++Q++LGS  M ++ L++L +G VITLDK++G+ +DI
Sbjct: 80  AQNASNSTGDTSSNKELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDI 139

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +N + IA+GE+ ++E+D + FG+ + EI++
Sbjct: 140 VVNGRIIARGEVIVLEDDPSRFGISLTEIID 170


>gi|110632666|ref|YP_672874.1| flagellar motor switch protein FliN [Mesorhizobium sp. BNC1]
 gi|110283650|gb|ABG61709.1| flagellar motor switch protein FliN [Chelativorans sp. BNC1]
          Length = 121

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 70/107 (65%), Gaps = 5/107 (4%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQIILGSCCMQISNLVNL 96
           + K++   + + I    + + E++  N D      +++IPV++QI+LGS  M +S L+ L
Sbjct: 8   VHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSELMAL 67

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +G  ++LD+R+GE V+I +N + IA+GEITI+E D + FGVR+ EI
Sbjct: 68  QRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114


>gi|163844318|ref|YP_001621973.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
 gi|163675041|gb|ABY39151.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
          Length = 106

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 57/81 (70%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DLIM IPV +Q++LG   M +S+L+ L  G VITLDK++G+ VDI +N + IA+G
Sbjct: 25  SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRVIARG 84

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D   FGV + EI+ 
Sbjct: 85  EVIVLEDDSPRFGVSLTEIIG 105


>gi|23499886|ref|NP_699326.1| flagellar motor switch protein FliN [Brucella suis 1330]
 gi|23463461|gb|AAN33331.1| flagellar motor switch protein FliN, putative [Brucella suis 1330]
          Length = 106

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 58/81 (71%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DLIM IPV +Q++LG   M +S+L+ L  G VITLDK++G+ VDI +N + IA+G
Sbjct: 25  SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGCGAVITLDKQIGDPVDIVVNGRVIARG 84

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+D + FGV + EI+ 
Sbjct: 85  EVIVLEDDSSRFGVSLTEIIG 105


>gi|254702551|ref|ZP_05164379.1| Flagellar motor switch FliN protein [Brucella suis bv. 3 str. 686]
 gi|261753129|ref|ZP_05996838.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
 gi|261742882|gb|EEY30808.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
          Length = 107

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 55/74 (74%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DLIM IPV +Q++LG   M +S+L+ L +G VITLDK++G+ VDI +N + IA+G
Sbjct: 34  SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93

Query: 125 EITIMEEDDTHFGV 138
           E+ ++E+D + FGV
Sbjct: 94  EVIVLEDDSSRFGV 107


>gi|217976218|ref|YP_002360365.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
 gi|217501594|gb|ACK49003.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
          Length = 110

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 58/80 (72%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           + N + I+ IPV +Q++LGS  M +S+L+ L +G VI LD RVGE VD+ +N + IA+GE
Sbjct: 25  SRNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVVVNGRIIARGE 84

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           I ++E+D++ FGV + EI+ 
Sbjct: 85  IVVVEDDNSRFGVSLTEIVG 104


>gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571]
 gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571]
          Length = 120

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 55/74 (74%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +M IPV +Q++LGS  M ++NL+ L +G ++ LD RVGE VD+ +N + IA+GE+ ++EE
Sbjct: 40  VMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEVMVVEE 99

Query: 132 DDTHFGVRVIEILN 145
           D++ FGV + EI+ 
Sbjct: 100 DNSRFGVTLTEIVG 113


>gi|296447444|ref|ZP_06889369.1| flagellar motor switch protein FliN [Methylosinus trichosporium
           OB3b]
 gi|296255064|gb|EFH02166.1| flagellar motor switch protein FliN [Methylosinus trichosporium
           OB3b]
          Length = 123

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 59/82 (71%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +   + I+ IPV MQ+I+GS  M +SNL+ L +G ++ LD+++GE VD+ +N + IA+GE
Sbjct: 36  SRKLESILRIPVVMQVIVGSVTMPVSNLMKLGRGAIVPLDQKIGEPVDVVVNGRLIARGE 95

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + ++E+D+T FGV + EI+  +
Sbjct: 96  VVVVEDDNTRFGVSLTEIIEPR 117


>gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
 gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
          Length = 132

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 56/78 (71%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N + I+ IPV +Q++LGS  M +++L+ L +G VI LD RVGE V++ +N + +A+G + 
Sbjct: 47  NLEPILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVV 106

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++E++++ FGV + EI+ 
Sbjct: 107 VVEDENSRFGVSLTEIVG 124


>gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
 gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
          Length = 131

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 56/79 (70%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N + I+ IPV +Q++LGS  M +++L+ L +G VI LD RVGE V++ +N + +A+G + 
Sbjct: 47  NLEPILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVV 106

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++E++++ FGV + EI+  
Sbjct: 107 VVEDENSRFGVSLTEIVGG 125


>gi|114706763|ref|ZP_01439663.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
 gi|114537711|gb|EAU40835.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
          Length = 131

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 56/76 (73%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DL++++ V MQ++LGS  M +S L+ L++G ++ LD +VG+ +D+ +N + IA+GEI 
Sbjct: 41  DLDLVLDVSVTMQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIV 100

Query: 128 IMEEDDTHFGVRVIEI 143
           ++++DD  FGV + E+
Sbjct: 101 VLDQDDQQFGVTLTEV 116


>gi|300024613|ref|YP_003757224.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526434|gb|ADJ24903.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 140

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 53  PISSDSNNILEKS--TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           P  S++  I E     DN  +I  +PV M+++LGS  M ++ L  L+KG V+ LDK VG+
Sbjct: 41  PADSEAGGIEEPQIEADNSAMIAGLPVMMKVVLGSAKMPVATLAKLAKGSVVKLDKMVGD 100

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            VDI +N   IA+GE+ I+ E  + FGV + ++
Sbjct: 101 PVDILVNGHLIARGEVVILNEASSRFGVVLTQV 133


>gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 366

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NFDLI+++PV++ + LG     I  ++NL+ G VI LDK  G+ VDI +N + IA+GE+ 
Sbjct: 283 NFDLIVDVPVRITVRLGQAAKTIGEILNLTPGSVIELDKMAGDPVDILVNGKLIARGEVV 342

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+ EI+N
Sbjct: 343 VIDE---NFGVRITEIVN 357


>gi|312115254|ref|YP_004012850.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220383|gb|ADP71751.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 120

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 68/101 (67%), Gaps = 4/101 (3%)

Query: 49  NISEPISSDSNNI--LEKSTD--NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +++E ++  + ++  L K  D  + + ++ IP+ ++++LGS  M I  +  L +G VI L
Sbjct: 16  DVAEEVTRAAASLIGLGKGGDPGSLERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPL 75

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D++VG++VD+ IN + IAKGEI +++E+ + FGV + E+++
Sbjct: 76  DRKVGDAVDVMINGRIIAKGEIVVLDEEGSRFGVTLTEMID 116


>gi|323139659|ref|ZP_08074701.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
 gi|322395091|gb|EFX97650.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
          Length = 124

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 5/97 (5%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           + P+ +D + +        D I+ IPV +Q+++GS  + +S+L+ L +G VI LD RVG+
Sbjct: 28  APPVDTDKSQL-----RRIDSILRIPVVVQVVVGSATLPVSSLLKLGRGAVIPLDHRVGD 82

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            VDI +N + IA+GE+ ++EED   FGV + EI   Q
Sbjct: 83  PVDIVVNGRTIARGEVVVVEEDGARFGVSLTEICEPQ 119


>gi|209963529|ref|YP_002296444.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|209956995|gb|ACI97631.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 119

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D    I N+PV +Q++LG   M +S L+ L +G V+ L+++VGE+VD+ +N++ IA+GE+
Sbjct: 37  DELRAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIARGEV 96

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            I+  DD   GV + EI+ A+
Sbjct: 97  VIV--DDGRLGVTMTEIVKAE 115


>gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42]
 gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42]
          Length = 378

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D N   + S +N D++M+IP+ + + LG     +  ++ LS G +I LDK  GE VDI +
Sbjct: 284 DHNEAAQGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 343

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N + +AKGE+ ++EE   +FGVRV +IL+
Sbjct: 344 NQRIVAKGEVVVIEE---NFGVRVTDILS 369


>gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 415

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 58/79 (73%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +L+M+IP+K+ + LG    QI +++ LS+G +I LDK  GE VDI +NN+ IAKGE+
Sbjct: 331 NNLNLLMDIPLKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEV 390

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E+   FGVRV +I++
Sbjct: 391 VVIDEN---FGVRVTDIVS 406


>gi|162147463|ref|YP_001601924.1| flagellar motor switch protein fliN [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545572|ref|YP_002277801.1| flagellar motor switch protein FliN [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786040|emb|CAP55622.1| putative flagellar motor switch protein fliN [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533249|gb|ACI53186.1| flagellar motor switch protein FliN [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 125

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 56/82 (68%), Gaps = 2/82 (2%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
            +   + + +IPVK+  ++GS  M +S L+ L +G V+ LD+++GE+VDI  NN+ IA+G
Sbjct: 41  GSGQMEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARG 100

Query: 125 EITIMEEDDTHFGVRVIEILNA 146
           E+ ++  DD H GV + EI+++
Sbjct: 101 EVVVV--DDNHIGVTMTEIISS 120


>gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
           43970]
 gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
           43970]
          Length = 129

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 66/102 (64%), Gaps = 7/102 (6%)

Query: 48  DNISEPISSDS----NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           D +SE +++DS    +N++   +++ DLI++IPVKM + LG   M I  L+ LS+G V++
Sbjct: 21  DAMSEQLAADSSPPKDNLVPNFSEDLDLILDIPVKMTVELGRTKMTIKELLRLSQGSVVS 80

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           L+   GE +DI IN   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 81  LEGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIIT 119


>gi|328545472|ref|YP_004305581.1| flagellar motor switch protein [polymorphum gilvum SL003B-26A1]
 gi|326415213|gb|ADZ72276.1| Probable flagellar motor switch protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 136

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 60/80 (75%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D I+ IPV +Q++LGS  M ++NL+ L +G VI L+ RVGE VDI +N + +A+GE+ 
Sbjct: 51  NLDTILGIPVNIQVVLGSATMLVANLLKLGRGAVIPLNHRVGEPVDIVVNGRVVARGEVV 110

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E+D++ FGV + EI++AQ
Sbjct: 111 VVEDDNSRFGVSLTEIISAQ 130


>gi|209964122|ref|YP_002297037.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|7025357|gb|AAF35847.1|AF220003_1 polar flagellar motor switch protein FpiN [Rhodospirillum centenum]
 gi|209957588|gb|ACI98224.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 108

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 57/79 (72%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + +IPV++  +LG C MQ+S+L+ L +G V+ LD++VGE++DI +NN+ +A+GE+ 
Sbjct: 30  DLESVYDIPVQISAVLGKCTMQVSSLMKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVV 89

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++E+     GV + EI+ +
Sbjct: 90  VVED---RLGVTMTEIIKS 105


>gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
 gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
          Length = 436

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 58/79 (73%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +L+M+IP+++ + LG    QI +++ LS+G +I LDK  GE VDI +NN+ IAKGE+
Sbjct: 352 NNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEV 411

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E+   FGVRV +I++
Sbjct: 412 VVIDEN---FGVRVTDIVS 427


>gi|85060032|ref|YP_455734.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
 gi|84780552|dbj|BAE75329.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
          Length = 132

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 14/115 (12%)

Query: 38  SEMLIQKND-------VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
           +E L+Q+          D I  P++    N    S  + DLIM+IPVKM + LG   M I
Sbjct: 15  AEALVQQGGDRERAVSTDGIFSPLAGKGGN---GSLQDIDLIMDIPVKMTVELGRTKMTI 71

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             L+ L++G V+ LD   GE +DI IN   IA+GE+ + ++    +GVR+  I+ 
Sbjct: 72  KELLRLAQGSVVALDGLAGEPLDILINGYLIAQGEVVVADK----YGVRITSIIT 122


>gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein
           [Paenibacillus polymyxa SC2]
 gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus polymyxa SC2]
          Length = 437

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 60/88 (68%), Gaps = 3/88 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           S    +   +N +L+M+IP+++ + LG    QI +++ LS+G +I LDK  GE VDI +N
Sbjct: 344 SGGFPQVDENNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMVN 403

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N+ IAKGE+ +++E+   FGVRV +I++
Sbjct: 404 NKLIAKGEVVVIDEN---FGVRVTDIVS 428


>gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
 gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
          Length = 171

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 73/131 (55%), Gaps = 5/131 (3%)

Query: 21  HIDNPLQD-TNVSSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNI 75
            +D P ++ T  +SP         + D D +++ ++    + S + +    D  + + +I
Sbjct: 4   ELDGPAEEVTQTTSPEIEGAPATPRYDFDKVADALADVSPAASRSPVSPKRDATNSLWSI 63

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+ + ++LG   + +S+L+NLS GD ++LD+R+G+ V+I  N   IA G++  ++E    
Sbjct: 64  PLDVDVVLGHARLPVSDLMNLSIGDTLSLDRRIGDPVEIVANGTTIAWGQLCAVDESGER 123

Query: 136 FGVRVIEILNA 146
           FGVR+ ++  A
Sbjct: 124 FGVRLTKLSGA 134


>gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
 gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
          Length = 379

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D N   +   +N D++M+IP+ + + LG     +  ++ LS G +I LDK  GE VDI +
Sbjct: 285 DPNEAPQAHLNNLDMLMDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 344

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N + +AKGE+ ++EE   +FGVRV +IL+
Sbjct: 345 NQRIVAKGEVVVIEE---NFGVRVTDILS 370


>gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
           43243]
          Length = 197

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 63/96 (65%), Gaps = 5/96 (5%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +P + D + + +K  +N DLIM++P+++ + LG     I +++  + G +I L+K  GES
Sbjct: 107 QPFAGDLSALSQK--ENIDLIMDVPLEVTVELGRTSKTIKDILEFAPGTIIELNKIAGES 164

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           VD+ +N + +AKGE+ ++EE+   FGVR+ EI+  Q
Sbjct: 165 VDVLVNGKNVAKGEVVVIEEN---FGVRITEIIKEQ 197


>gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sp. AT1b]
 gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sp. AT1b]
          Length = 376

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 5/93 (5%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P+ S ++   E +  N  L+ ++P+ + + LG     +  ++ LS+G +I LDK  GE V
Sbjct: 281 PLQSPASQ--EAAPANLGLLYDVPLNVTVELGRTKKSVREVLELSQGSIIELDKLAGEPV 338

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           DI +N Q+IA+GE+ ++EE+   FGVRV EI+ 
Sbjct: 339 DIYVNQQRIARGEVVVIEEN---FGVRVTEIIQ 368


>gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. JDR-2]
 gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. JDR-2]
          Length = 421

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 57/78 (73%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+++IP+K+ + LG    QI +++ LS+G +I LDK  GE VDI +NN+ IAKGE+ 
Sbjct: 338 NLNLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVV 397

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV +I++
Sbjct: 398 VIDE---NFGVRVTDIVS 412


>gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus curdlanolyticus YK9]
 gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus curdlanolyticus YK9]
          Length = 411

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 57/78 (73%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+++IP+K+ + LG    QI +++ LS+G +I LDK  GE VDI +NN+ IAKGE+ 
Sbjct: 328 NLNLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVV 387

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV +I++
Sbjct: 388 VIDE---NFGVRVTDIVS 402


>gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5]
 gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5]
          Length = 378

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D N  ++    N D++++IP+ + + LG     +  ++ LS G +I LDK  GE VDI +
Sbjct: 284 DPNEAVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 343

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N + +AKGE+ ++EE   +FGVRV +IL+
Sbjct: 344 NQRIVAKGEVVVIEE---NFGVRVTDILS 369


>gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName:
           Full=CheY-P phosphatase FliY; AltName: Full=Flagellar
           motor switch protein FliY
 gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis]
 gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 378

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D N  ++    N D++++IP+ + + LG     +  ++ LS G +I LDK  GE VDI +
Sbjct: 284 DPNEAVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 343

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N + +AKGE+ ++EE   +FGVRV +IL+
Sbjct: 344 NQRIVAKGEVVVIEE---NFGVRVTDILS 369


>gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 287

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 69/108 (63%), Gaps = 4/108 (3%)

Query: 37  NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
            S  ++Q+NDV++++ P      +I +    N +L++++ V + + LG   + I +L++L
Sbjct: 174 TSASVMQENDVEDVTFPQLRPEGDI-QPLPRNLELLLDVKVNVSVELGRSRVSIKDLLSL 232

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
             G +ITLDK  GE VDI +N + IAKGE+ +++E    FGVR+++I+
Sbjct: 233 GSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDE---SFGVRILDII 277


>gi|83309599|ref|YP_419863.1| flagellar motor switch protein [Magnetospirillum magneticum AMB-1]
 gi|82944440|dbj|BAE49304.1| Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magneticum AMB-1]
          Length = 108

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           + +S  + + + +IPV++  +LG   MQ++ L+ L +G V+ LD++VGE++DI +NN+ +
Sbjct: 24  MPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLV 83

Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
           A+GE+ ++E+     GV + EI+ 
Sbjct: 84  ARGEVVVVED---RLGVTMTEIIK 104


>gi|315648126|ref|ZP_07901227.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus vortex V453]
 gi|315276772|gb|EFU40115.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus vortex V453]
          Length = 419

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +L+M+IP+K+ + LG    QI +++ +S+G +I LDK  GE VDI +N++ IAKGE+
Sbjct: 335 NNLNLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEV 394

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E+   FGVRV +I++
Sbjct: 395 VVIDEN---FGVRVTDIVS 410


>gi|23015636|ref|ZP_00055406.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 108

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 57/83 (68%), Gaps = 3/83 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           + +S  + + + +IPV++  +LG   MQ++ L+ L +G V+ LD++VGE++DI +NN+ +
Sbjct: 24  MPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLV 83

Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
           A+GE+ ++E+     GV + EI+
Sbjct: 84  ARGEVVVVED---RLGVTMTEII 103


>gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
 gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
          Length = 389

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 15/114 (13%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
           SSPT      +Q+    N   P  S      ++   N D+++++P+K+ + LG     IS
Sbjct: 281 SSPT------VQEAAFSNFESPTLS------KQEHRNLDMLLDVPLKVTVELGRTKQSIS 328

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           ++++LS G +I LDK  GE VDI +N + +A+GE+ ++EE   +FGVRV +I++
Sbjct: 329 DILDLSAGSIIELDKLAGEPVDILVNEKLVAEGEVVVIEE---NFGVRVTDIIS 379


>gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 134

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           K D D +S    S + +     + N D ++++P+++ + LG   M I+ ++ L++G VI 
Sbjct: 27  KPDFDELSADAGSPAPSTASTGSQNLDFLLDVPLEVSVELGRTSMIINKMLQLTQGSVIE 86

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           LDK  GE V+I +N + + KGE+ ++ E    FG+RV EI++
Sbjct: 87  LDKAAGEPVEIFVNQKLMGKGEVVVVNE---RFGIRVTEIIS 125


>gi|329929333|ref|ZP_08283086.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
 gi|328936702|gb|EGG33145.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
          Length = 420

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +L+M+IP+K+ + LG    QI +++ +S+G +I LDK  GE VDI +N++ IAKGE+
Sbjct: 336 NNLNLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEV 395

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E+   FGVRV +I++
Sbjct: 396 VVIDEN---FGVRVTDIVS 411


>gi|261407971|ref|YP_003244212.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. Y412MC10]
 gi|261284434|gb|ACX66405.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. Y412MC10]
          Length = 420

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +L+M+IP+K+ + LG    QI +++ +S+G +I LDK  GE VDI +N++ IAKGE+
Sbjct: 336 NNLNLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEV 395

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E+   FGVRV +I++
Sbjct: 396 VVIDEN---FGVRVTDIVS 411


>gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4]
          Length = 388

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 13/137 (9%)

Query: 19  SMHIDNPLQDTNVSSP--TNNSEMLIQKNDVDNISEPI--------SSDSNNILEKSTDN 68
           SM    P+Q+T    P  T       Q     ++S+P+        S     + E    N
Sbjct: 246 SMATSTPVQETQSQQPFTTYQQPQAPQHFGGQHLSQPVNVQPAEFASFGQPALQESEARN 305

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            +++++IP+ + + LG     +  ++ LS+G +I LDK  GE VDI +NN+ IAKGE+ +
Sbjct: 306 LNMLLDIPLSVTVELGRTKRSVKEILELSQGSIIELDKLAGEPVDILVNNRLIAKGEVVV 365

Query: 129 MEEDDTHFGVRVIEILN 145
           ++E   +FGVR+ +I++
Sbjct: 366 IDE---NFGVRLTDIVS 379


>gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208]
 gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens LL3]
          Length = 377

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S +N D++M+IP+ + + LG     +  ++ LS G +I LDK  GE VDI +N + +AKG
Sbjct: 291 SRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKG 350

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++EE   +FGVRV +IL+
Sbjct: 351 EVVVIEE---NFGVRVTDILS 368


>gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1]
 gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus
           WK1]
          Length = 383

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S +   + E  + N D++++IP+++ + LG     + ++++LS G +I LDK  GE VDI
Sbjct: 287 SFEPAPLPEAESRNLDMLLDIPLQVTVELGRTKRSVQDILSLSSGSIIELDKLAGEPVDI 346

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +NN+ IAKGE+ +++E+   FGVRV  I++
Sbjct: 347 LVNNKLIAKGEVVVIDEN---FGVRVTSIIS 374


>gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2]
 gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580]
 gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2]
          Length = 377

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 18  RSMHIDNPLQDTNVSSP------TNNSEMLIQKNDVDNISEPI--------SSDSNNILE 63
           ++  +  P+Q+    +P      T   E   ++     +SEP+        S       +
Sbjct: 230 KTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKRQGTAKVSEPVQVAPAEFQSFAPQTEAQ 289

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
               N D++M+IP+ + + LG     +  ++ LS G +I LDK  GE VDI +N + +AK
Sbjct: 290 PHLQNLDMLMDIPLSVTVELGRTNRSVKEVLELSTGSIIELDKLAGEPVDILVNQRVVAK 349

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ +++E+   FGVRV +IL+
Sbjct: 350 GEVVVIDEN---FGVRVTDILS 368


>gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
          Length = 138

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 19/133 (14%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDV--DNISEPISSDSNNILEKSTD---------NFDLI 72
           +P+ D+N     N S+  I  +D+  D +SE   S S + + KS D         + D+I
Sbjct: 4   SPMSDSN-----NPSDGDISADDMWADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMI 58

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           M+IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ + 
Sbjct: 59  MDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD- 117

Query: 133 DTHFGVRVIEILN 145
              +GVR+ +I+ 
Sbjct: 118 --KYGVRITDIIT 128


>gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus
           silvestris StLB046]
          Length = 422

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S +S NI +    N +++++IP+++ + LG     +  ++ LS G +I LDK  GE VDI
Sbjct: 326 SFESANITQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 385

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +N++ IAKGE+ +++E+   FGVR+ +IL+
Sbjct: 386 LVNSRLIAKGEVVVIDEN---FGVRITDILS 413


>gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 375

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 61/89 (68%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS++  +K  +N DLI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  
Sbjct: 281 DSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILA 340

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N + IAKGE+ +++E   +FGVR+I+I++
Sbjct: 341 NGKYIAKGEVVVIDE---NFGVRIIDIVH 366


>gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
 gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
          Length = 408

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +   + E  T N +++++IP+++ + LG     + +++ LS G +I LDK  GE VDI +
Sbjct: 314 EPQQLQESETKNLNMLLDIPLQVTVELGRTKRSVKDILELSAGSIIELDKLAGEPVDILV 373

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N++ IAKGE+ ++EE   +FGVRV +I++
Sbjct: 374 NSRLIAKGEVVVIEE---NFGVRVTDIIS 399


>gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 375

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 61/89 (68%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS++  +K  +N DLI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  
Sbjct: 281 DSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILA 340

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N + IAKGE+ +++E   +FGVR+I+I++
Sbjct: 341 NGKYIAKGEVVVIDE---NFGVRIIDIVH 366


>gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629]
          Length = 404

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 5/95 (5%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P  +  N + +   +N DLIM++P+++ + LG     IS +++   G +I L+K  GE +
Sbjct: 308 PFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKLAGEPI 365

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           DI +N + +AKGE+ ++EE    FGVR+ EI+N++
Sbjct: 366 DILVNGKYVAKGEVVVIEE---SFGVRITEIVNSK 397


>gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
 gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
 gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1]
          Length = 404

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 5/95 (5%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P  +  N + +   +N DLIM++P+++ + LG     IS +++   G +I L+K  GE +
Sbjct: 308 PFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKLAGEPI 365

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           DI +N + +AKGE+ ++EE    FGVR+ EI+N++
Sbjct: 366 DILVNGKYVAKGEVVVIEE---SFGVRITEIVNSK 397


>gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 375

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 61/89 (68%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS++  +K  +N DLI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  
Sbjct: 281 DSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILA 340

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N + IAKGE+ +++E   +FGVR+I+I++
Sbjct: 341 NGKYIAKGEVVVIDE---NFGVRIIDIVH 366


>gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
 gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus
           C3-41]
          Length = 407

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S DSN I +    N +++++IP+++ + LG     +  ++ LS G +I LDK  GE VDI
Sbjct: 311 SFDSNVISQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 370

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +N++ IAKGE+ +++E   +FGVR+ ++L+
Sbjct: 371 LVNSRLIAKGEVVVIDE---NFGVRITDVLS 398


>gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 379

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D N   +    N D++++IP+ + + LG     +  ++ LS G +I LDK  GE VDI +
Sbjct: 285 DPNEASQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 344

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N + +AKGE+ ++EE   +FGVRV +IL+
Sbjct: 345 NQRIVAKGEVVVIEE---NFGVRVTDILS 370


>gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905]
 gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905]
          Length = 407

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S DSN I +    N +++++IP+++ + LG     +  ++ LS G +I LDK  GE VDI
Sbjct: 311 SFDSNVISQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 370

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +N++ IAKGE+ +++E   +FGVR+ ++L+
Sbjct: 371 LVNSRLIAKGEVVVIDE---NFGVRITDVLS 398


>gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
           27750]
 gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
           27750]
          Length = 437

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 61/93 (65%), Gaps = 5/93 (5%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +P ++D N I +K  +N +LI ++P+++ + LG     I +++  + G ++ L+K  GES
Sbjct: 349 QPFATDVNPISQK--ENIELIKDVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGES 406

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           VD+ +N + +AKGE+ ++EE    FGVR+ EI+
Sbjct: 407 VDVLVNGKYVAKGEVVVIEE---SFGVRITEII 436


>gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 384

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI +IPV++ + LG     +  +++ + G VI LDK  GE VD+ +N + IAKGE+ 
Sbjct: 300 NIGLIADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVV 359

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV EILN
Sbjct: 360 VIDE---NFGVRVTEILN 374


>gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica]
          Length = 144

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 11/127 (8%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE--------KSTDNFDLIMNIPVK 78
           Q T+ ++  +  +M  +  +     +P S  S  I E            + DLI++IPVK
Sbjct: 11  QPTDTAATGSAEDMWAEALEQQAAQQPTSDSSAAIFESLEPQDALAHLSDIDLILDIPVK 70

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ ++ +    +G+
Sbjct: 71  LSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGI 127

Query: 139 RVIEILN 145
           R+ +I+ 
Sbjct: 128 RITDIIT 134


>gi|144897407|emb|CAM74271.1| flagellar motor switch protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 107

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +S  + + + +IPV++  +LG   MQ++ L+ L +G V+ LD++VGE++DI +NN+ +A+
Sbjct: 25  RSARDLEAVYDIPVQVSAVLGKANMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVAR 84

Query: 124 GEITIMEEDDTHFGVRVIEIL 144
           GE+ ++E+     GV + EI+
Sbjct: 85  GEVVVVED---RLGVTMTEII 102


>gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
 gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
          Length = 410

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S DSN I +    N +++++IP+++ + LG     +  ++ LS G +I LDK  GE VDI
Sbjct: 314 SFDSNVISQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 373

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +N++ IAKGE+ +++E   +FGVR+ ++L+
Sbjct: 374 LVNSRLIAKGEVVVIDE---NFGVRITDVLS 401


>gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
 gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
          Length = 129

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 16/123 (13%)

Query: 32  SSPTNNSEMLIQKNDVDNI-----SEPISSD----SNNILEKSTDNFDLIMNIPVKMQII 82
           ++PT+ ++    K  +DN+     SE  ++D      N++   +++ DLI++IPVKM + 
Sbjct: 4   TTPTSGAD----KQSIDNLWGEAMSEQQTADNMPAKENLVPNFSEDLDLILDIPVKMTVE 59

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   M I  L+ LS+G V++L+   GE +DI IN   IA+GE+ ++ +    FG+R+ +
Sbjct: 60  LGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITD 116

Query: 143 ILN 145
           I+ 
Sbjct: 117 IIT 119


>gi|56384263|gb|AAV85781.1| FliN [Azospirillum brasilense]
          Length = 109

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 55/79 (69%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + +IPV++  +LG   MQ+S L+ L +G V+ LD++VGE++DI +NN+ +A+GE+ 
Sbjct: 31  DLEAVYDIPVQISAVLGKSTMQVSQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVV 90

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++E+     G+ + EI+ +
Sbjct: 91  VVED---RLGITMTEIIKS 106


>gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs]
 gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alkaliphilus oremlandii OhILAs]
          Length = 385

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 10/137 (7%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNILEKSTDN 68
           KD +  R M  D P  D   +    ++E    +N+  NI  P+   + D +++     +N
Sbjct: 247 KDTMHPREMSYDTPNYDHRANF---SNEAAATRNEPVNI-RPVQFQAFDDDSVKGVMPEN 302

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
             LI ++P+K+ + LG    +IS ++    G +I LDK VGE +DI +N Q +A GE+ +
Sbjct: 303 ISLIQDVPLKITVELGRTVKKISEILEFGPGTIIELDKLVGEPLDILVNGQYVANGEVVV 362

Query: 129 MEEDDTHFGVRVIEILN 145
           ++E   ++G+RV +I+N
Sbjct: 363 IDE---NYGIRVTDIVN 376


>gi|83591881|ref|YP_425633.1| flagellar motor switch protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574795|gb|ABC21346.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
           rubrum ATCC 11170]
          Length = 115

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 56/83 (67%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +S  + + + +IPV++  +LG   MQ++ L+ L +G V+ LD++VGE++DI +NN+ +A+
Sbjct: 33  RSAADLEAVYDIPVQVSAVLGKAHMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVAR 92

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ ++   D   GV + EI+ +
Sbjct: 93  GEVVVV---DDRLGVTMTEIIKS 112


>gi|209884355|ref|YP_002288212.1| flagellar motor switch phosphatase FliY [Oligotropha
           carboxidovorans OM5]
 gi|209872551|gb|ACI92347.1| flagellar motor switch phosphatase FliY [Oligotropha
           carboxidovorans OM5]
          Length = 119

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + ++PV++  +LG   M +S+L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ 
Sbjct: 41  DLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVV 100

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E+     GV + EI+ A+
Sbjct: 101 LVED---KLGVTMTEIIKAE 117


>gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
           1]
 gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
           1]
          Length = 141

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +S  N + I++IP+++ + LG     I ++V+L+ G ++  D+ VGE VDIT+N + IA+
Sbjct: 54  QSHPNLERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIAR 113

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ ++ E   HFGVR+ +I+  Q
Sbjct: 114 GEVVVVGE---HFGVRISQIITPQ 134


>gi|299131951|ref|ZP_07025146.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
 gi|298592088|gb|EFI52288.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
          Length = 119

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + ++PV++  +LG   M +S+L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ 
Sbjct: 41  DLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVV 100

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E+     GV + EI+ A+
Sbjct: 101 LVED---KLGVTMTEIIKAE 117


>gi|323490152|ref|ZP_08095372.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
 gi|323396200|gb|EGA89026.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
          Length = 351

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 62/91 (68%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S D+ ++    T+N +L+++IP+++ + LG     + +++ +S+G +I LDK  GE VDI
Sbjct: 255 SFDNTDVASSETNNLNLLLDIPLQVTVELGRTKRMVKDILEISQGSIIELDKLAGEPVDI 314

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            INN+ IA GE+ +++E+   FGVRV ++L+
Sbjct: 315 LINNKLIAVGEVVVIDEN---FGVRVTDVLS 342


>gi|254470176|ref|ZP_05083580.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
 gi|211960487|gb|EEA95683.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
          Length = 111

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 59/83 (71%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+ ++ + + ++PV++  +LG   M++S+L++L  G V+ LD++VGE++D+ +NN+ IA+
Sbjct: 30  KAAEDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIAR 89

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ ++E+     GV + EI+ A
Sbjct: 90  GEVVLVED---KLGVTMTEIIKA 109


>gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 375

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K T N  LIM++P+++ + LG     I ++++L  G VI LDK  GE VDI +N + IAK
Sbjct: 288 KDTTNLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAK 347

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ +++E+   FGVR+ +I++
Sbjct: 348 GEVVVIDEN---FGVRITDIVS 366


>gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 386

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 65/99 (65%), Gaps = 11/99 (11%)

Query: 52  EPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           EP+S     I E +T   +N DLI+++P+++ ++LG   M + +++NL  G +I LDK  
Sbjct: 288 EPLS-----IRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            E V+I +N +K+A GE+ +++E   +FGVR+  I+++Q
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDE---NFGVRITSIVSSQ 378


>gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
           35580]
 gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
           35580]
          Length = 382

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           N + E    N  LIM++ ++M + LG     I  ++++ +G +I LDK  GE VDI +N+
Sbjct: 291 NGVTEAEQGNIGLIMDVFMEMTVELGRTRKMIKEILSMGEGHIIELDKLAGEPVDILVNH 350

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145
           + IAKGE+ +++E+   FGVRV EIL+
Sbjct: 351 KPIAKGEVVVIDEN---FGVRVTEILS 374


>gi|296283237|ref|ZP_06861235.1| flagellar motor switch protein [Citromicrobium bathyomarinum JL354]
          Length = 126

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             D +  +PVKMQ +LG   M +S L++++ G V+ LD++VGE VDI ++N+ IA+GE+ 
Sbjct: 49  GLDAVHEVPVKMQAVLGRARMTVSELMSIAPGRVVELDRKVGEPVDIFVSNRLIARGEVV 108

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++   D   GV + EI++
Sbjct: 109 LI---DKALGVTLTEIVH 123


>gi|118593639|ref|ZP_01551015.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
 gi|118433750|gb|EAV40411.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
          Length = 111

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS   + +S  + + + ++PV++  +LG   M +S+L+ L+ G V+ LD++VGE++DI +
Sbjct: 23  DSETHVPQSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLASGTVLELDRKVGEAIDIYV 82

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N++ +A+GE+ ++E+     GV + EI+ 
Sbjct: 83  NDRLVARGEVVLVED---KLGVTMTEIIK 108


>gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
 gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657]
 gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
 gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str.
           657]
          Length = 386

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI+++P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   +FGVR+  I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378


>gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
           2916]
 gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
           2916]
          Length = 386

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI+++P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   +FGVR+  I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378


>gi|15615008|ref|NP_243311.1| flagellar motor switch protein [Bacillus halodurans C-125]
 gi|10175065|dbj|BAB06164.1| flagellar motor switch protein [Bacillus halodurans C-125]
          Length = 401

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D++++IP+++ + LG     I ++++ ++G +I LDK  GE VDI +N + IAKGE+ 
Sbjct: 318 NLDMLLDIPLQVTVELGRTKRSIKDILSFTQGSIIELDKLAGEPVDILVNQKLIAKGEVV 377

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV EIL+
Sbjct: 378 VIDE---NFGVRVTEILS 392


>gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402
           065]
          Length = 386

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI+++P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   +FGVR+  I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378


>gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str.
           Langeland]
 gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
           Langeland]
 gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
           230613]
          Length = 386

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI+++P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   +FGVR+  I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378


>gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
 gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
          Length = 432

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S +  ++ +  T N D++++IP+++ + LG     +  ++ LS G +I LDK  GE VDI
Sbjct: 336 SFEPYHMQDHETKNLDMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 395

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +NN+ IA+GE+ +++E+   FGVRV +I++
Sbjct: 396 LVNNRLIAQGEVVVIDEN---FGVRVTDIIS 423


>gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
 gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
          Length = 112

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 59/95 (62%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           + P   D      +   + + + ++PV++  +LGS  M +S+L+ L+ G V+ LD++VGE
Sbjct: 18  AAPSEEDGATGATQGAGDLEAVFDVPVRISAVLGSSKMHVSDLLKLASGTVLELDRKVGE 77

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           ++DI +N++ +A+GE+ ++E+     GV + EI+ 
Sbjct: 78  AIDIYVNDRLVARGEVVLVED---KLGVTMTEIIK 109


>gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall]
 gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           Hall]
 gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
           Kyoto]
          Length = 386

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI+++P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   +FGVR+  I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378


>gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra]
 gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str.
           Okra]
          Length = 386

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI+++P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+
Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   +FGVR+  I+++Q
Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378


>gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073]
 gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC
           39073]
          Length = 395

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           +   S+ N DLI+++P+ +++ILG+   +I ++++L+ G ++ LD+ V E V IT+N   
Sbjct: 304 VYGASSRNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTP 363

Query: 121 IAKGEITIMEEDDTHFGVRVIEIL 144
           IA+GE+ I+ E+   FGVR+  IL
Sbjct: 364 IAQGEVVIVNEN---FGVRITHIL 384


>gi|254502033|ref|ZP_05114184.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
 gi|222438104|gb|EEE44783.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
          Length = 111

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 15/119 (12%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           QDTN+  P +  E   +  + + I  P          +S  + + + ++PV++  +LG  
Sbjct: 5   QDTNI--PLDELEAPDRAGEQEEIPHP----------QSAADLEAVFDVPVRISAVLGHS 52

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            M +S+L+ L+ G V+ LD++VGE++DI +N++ +A+GE+ ++E+     GV + EI+ 
Sbjct: 53  KMHVSDLLKLASGTVLELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIK 108


>gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032]
 gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032]
          Length = 374

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 9/100 (9%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           + +  SEP  S S         N D++M+IP+ + + LG     +  ++ LS G +I LD
Sbjct: 275 EFEAFSEPQHSTSQ------LGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELD 328

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           K  GE VDI +N + +AKGE+ +++E   +FGVRV +IL+
Sbjct: 329 KLAGEPVDILVNKRIVAKGEVVVIDE---NFGVRVTDILS 365


>gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
 gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
          Length = 133

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 12/108 (11%)

Query: 47  VDNISEPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
            D +SE   S S + + KS D         + D+IM+IPVK+ + LG   M I  L+ LS
Sbjct: 19  ADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMIMDIPVKLTVELGRTKMTIKELLRLS 78

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I+ 
Sbjct: 79  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIIT 123


>gi|84502360|ref|ZP_01000496.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
 gi|84389172|gb|EAQ01969.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
          Length = 128

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 2/78 (2%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D ++N+ + +QI+LG   M IS L+ LS+G +I LDK++GE VDI IN++ +A+G++ 
Sbjct: 47  NIDAMLNVGLNIQIVLGRTRMPISQLLKLSRGSIIELDKKIGEPVDIVINDRLVARGDLV 106

Query: 128 IMEEDDTHFGVRVIEILN 145
            ++E+    GV +IEI+ 
Sbjct: 107 KLDEE--RVGVSLIEIVK 122


>gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
 gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
          Length = 135

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S DS N+   S  + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI
Sbjct: 39  SFDSGNV-AGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDI 97

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            IN   IA+GE+ ++ +    +GVR+ +I+ 
Sbjct: 98  LINGYLIAQGEVVVVND---KYGVRITDIIT 125


>gi|115522993|ref|YP_779904.1| flagellar motor switch protein [Rhodopseudomonas palustris BisA53]
 gi|115516940|gb|ABJ04924.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
          Length = 116

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 10/120 (8%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           DT V  P  NS  +    DVD   E  +S       +   + + + ++PV++  +LG   
Sbjct: 5   DTKVPLPDLNSGDVPAMTDVDYNDEEHAS-------RVAADLEAVFDVPVQVSAVLGRSK 57

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           M +  L+ L  G V+ LD++VGE++DI +NN+ IA+GE+ ++E+     GV + EI+ A+
Sbjct: 58  MDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLIARGEVVLVED---KLGVTMTEIIAAE 114


>gi|288960027|ref|YP_003450367.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
 gi|288912335|dbj|BAI73823.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
          Length = 105

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 55/79 (69%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + +IPV++  +LG   MQ++ L+ L +G V+ LD++VGE++DI +NN+ +A+GE+ 
Sbjct: 27  DLEAVYDIPVQISAVLGKSTMQVAQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVV 86

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++E+     G+ + EI+ +
Sbjct: 87  VVED---RLGITMTEIIKS 102


>gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
           15579]
 gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
           15579]
          Length = 390

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI+++P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+
Sbjct: 305 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 364

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            ++   D +FGVR+  I+++Q
Sbjct: 365 VVV---DENFGVRITNIVSSQ 382


>gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB]
 gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB]
          Length = 135

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 4/91 (4%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S DS N+   S  + DLIM+IPVK+ + LG   M I  L+ L++G V++LD   GE +DI
Sbjct: 39  SFDSANV-AGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDI 97

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            IN   IA+GE+ ++ +    +GVR+ +I+ 
Sbjct: 98  LINGYLIAQGEVVVVND---KYGVRITDIIT 125


>gi|296534812|ref|ZP_06897160.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
 gi|296264860|gb|EFH11137.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
          Length = 110

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 58/92 (63%), Gaps = 2/92 (2%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P + ++         + + + +IPV++  +LG   MQ+S L+ L +G V+ LD+++GE+V
Sbjct: 15  PEAPEAEPRRTGGVGDLNAVYDIPVQVSAVLGRATMQVSQLLKLGRGAVVELDRKLGEAV 74

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           DI +NN+ +A+GE+ ++ E+    GV + EI+
Sbjct: 75  DIYVNNRLVARGEVVMVGEN--RLGVTMTEIV 104


>gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
 gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
          Length = 175

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   + I  L+ L++G VI LD   GE +DI IN   IA+GE+ 
Sbjct: 91  DLDLIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVV 150

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++   D  +G+R+ EI+
Sbjct: 151 VV---DDKYGIRITEII 164


>gi|58038896|ref|YP_190860.1| flagellar motor switch protein [Gluconobacter oxydans 621H]
 gi|58001310|gb|AAW60204.1| Flagellar motor switch protein FliN [Gluconobacter oxydans 621H]
          Length = 105

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 57/85 (67%), Gaps = 2/85 (2%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +K+ ++   I +IPV +  +LG   M I+ L+ L +G V+ LD+++G+ +DI +NN+ IA
Sbjct: 22  DKTPNDLQAIYDIPVTLSAVLGRATMPINQLLKLGRGAVVELDRKIGDPIDILVNNRLIA 81

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ ++  D+T  GV + EI+ ++
Sbjct: 82  RGEVVMV--DETRLGVTMTEIVKSE 104


>gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
           2060]
 gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
           2060]
          Length = 116

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           KS  + + + ++PV +  +LG+  M I +L+ L  G V+ LD++VGE++DI +NN+ +A+
Sbjct: 35  KSAADLEQVFDVPVVVSAVLGASRMPIGDLLRLGPGTVLELDRKVGEAIDIYVNNRLVAR 94

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ ++EE     GV + EI+ +
Sbjct: 95  GEVVLVEE---RLGVTMTEIVKS 114


>gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Bacillus pumilus
           ATCC 7061]
 gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Bacillus pumilus
           ATCC 7061]
          Length = 374

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D++M+IP+ + + LG     +  ++ LS G +I LDK  GE VDI +N + +AKGE+ 
Sbjct: 291 NLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLAGEPVDILVNKRIVAKGEVV 350

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV +IL+
Sbjct: 351 VIDE---NFGVRVTDILS 365


>gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 362

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM++P+++ + LG    +I  ++ +  G +I L+K  GE VDI +N + IA+GE+ 
Sbjct: 279 SLDLIMDVPLEISVELGRTVKKIKEILEIGPGSIIELEKLAGEPVDILVNGKLIARGEVV 338

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++   D  FGVR+ EILN+
Sbjct: 339 VI---DESFGVRITEILNS 354


>gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
          Length = 164

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T   D +M+IP+ +++++G   +QI  L+NL  G V+ LD+   E VDI +N + IAKGE
Sbjct: 71  TKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRETTEPVDIKVNGKLIAKGE 130

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + ++ E    FGVR+ EI + +
Sbjct: 131 LVVVGE---KFGVRITEIYSEE 149


>gi|148260473|ref|YP_001234600.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
 gi|146402154|gb|ABQ30681.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
          Length = 132

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           ++ + + + + ++PV +  +LG   MQ+S L+ L +G V+ LD++ G+ +DI +NN+ IA
Sbjct: 47  QRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIA 106

Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
           +GE+ ++  D+T  G+ + EI+ +
Sbjct: 107 RGEVVML--DETKLGITMTEIVKS 128


>gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor owensensis OL]
 gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 16/127 (12%)

Query: 31  VSSPTNNSEMLIQKN----------DVDNISEPISSDSNNILE--KSTDNFDLIMNIPVK 78
           VS PTN  + L Q +           V N+S P+  +S +  E  K  +N +LI+++P++
Sbjct: 249 VSQPTNKQKTLPQSHTQPPKKEQPQKVYNVS-PVQFESFDEEEERKYPENIELILDVPLE 307

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG     +  ++  S G +I L+K  GE VDI +N + IAKGE+ +++E   +FGV
Sbjct: 308 ITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGV 364

Query: 139 RVIEILN 145
           R+ +I+N
Sbjct: 365 RITDIVN 371


>gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
 gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
          Length = 137

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+G
Sbjct: 50  SLQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQG 109

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    FGVR+ +I+ 
Sbjct: 110 EVVVVAD---KFGVRITDIIT 127


>gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
 gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
          Length = 134

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T++  LI++IPVKM + LG   M I  L++LS+  V+ L+ + GE +DI IN   IA+GE
Sbjct: 48  TEDLSLILDIPVKMTVELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGE 107

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + +M E    +GVR+ +I+ 
Sbjct: 108 VVVMGE---QYGVRIADIVT 124


>gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
           2489]
 gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
           2489]
          Length = 408

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +LIM++ ++M + LG     I +++ L +G +I LDK  GE VDI +N++ IAKGE+ 
Sbjct: 325 NINLIMDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVNHKPIAKGEVV 384

Query: 128 IMEEDDTHFGVRVIEILNA 146
           +++E+   FGVRV EIL A
Sbjct: 385 VIDEN---FGVRVTEILPA 400


>gi|302343740|ref|YP_003808269.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
           2075]
 gi|301640353|gb|ADK85675.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
           2075]
          Length = 117

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 59/90 (65%), Gaps = 3/90 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           +D +  L++   N D I++IP+++ + LG   M I++L+ L +G V+ L+K  GE ++I 
Sbjct: 22  ADGDGALQRPAQNIDFILDIPLEVTVELGRTSMLINDLLQLGQGSVVELNKLAGEPLEIL 81

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +N + IA+GE+ ++ E    FGVR+ +I++
Sbjct: 82  VNRKLIARGEVVVVNE---KFGVRLTDIVS 108


>gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
 gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
          Length = 137

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+G
Sbjct: 50  SLQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 109

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    FGVR+ +I+ 
Sbjct: 110 EVVVVAD---KFGVRITDIIT 127


>gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 145

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 5/109 (4%)

Query: 38  SEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           +E  + K+ V+N ++ I    D+ + L  +  + DLI++IPVK+ + LG   M I  L+ 
Sbjct: 29  TENTLAKSAVENSADEIFQNLDNPSPLAGNLHDIDLILDIPVKLTVELGRTKMTIKELLR 88

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    FGVR+ +I+
Sbjct: 89  LSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRITDII 134


>gi|297584048|ref|YP_003699828.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           selenitireducens MLS10]
 gi|297142505|gb|ADH99262.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           selenitireducens MLS10]
          Length = 412

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    N DL+M+IP+++ + LG     I  ++ L +G ++ LDK  GE VDI +N + IA
Sbjct: 324 ENEQRNLDLLMDIPLEVTVELGRTKRSIKEILELGQGSIVELDKLAGEPVDILVNQRLIA 383

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           KGE+ +++E   +FGVRV +I++
Sbjct: 384 KGEVVVIDE---NFGVRVTDIVS 403


>gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13]
          Length = 410

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S ++  + E   +N +++++IP+++ + LG     + +++ LS G +I LDK  GE VDI
Sbjct: 314 SFETTTVEESEPNNLNMLLDIPLQVTVELGRTKRSVKDILELSTGSIIELDKLAGEPVDI 373

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +NN+ IA+GE+ +++E    FGVRV +I++
Sbjct: 374 LVNNKLIAQGEVVVIDES---FGVRVTDIVS 401


>gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermincola sp. JR]
 gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermincola potens JR]
          Length = 412

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+    DLIM++P+++ + LG     I  ++NL+ G V+ LDK  GE VD+ +N + +AK
Sbjct: 325 KTPSTIDLIMDVPLQITVELGKAKKTIREILNLAPGSVVELDKLAGEPVDLMVNGKLLAK 384

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ +++E   +FG+R+ +I++
Sbjct: 385 GEVVVIDE---NFGIRITDIVS 403


>gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
 gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
          Length = 138

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 8/125 (6%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKSTDNFDLIMNIPVKM 79
           +P   TN  S    +E L Q+   ++ S    +    D  N L + +D  D+IM+IPV++
Sbjct: 7   SPDASTNHDSEDLWAEALEQQKKAESASAGAQAFDNFDGQNPLNQLSD-IDMIMDIPVRL 65

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + LG   M I  L++LS+G V++LD   GE +DI IN   IA+GE+ ++ +   ++G+R
Sbjct: 66  SVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIR 122

Query: 140 VIEIL 144
           + +I+
Sbjct: 123 ITDII 127


>gi|259907614|ref|YP_002647970.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
 gi|224963236|emb|CAX54720.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
 gi|283477456|emb|CAY73372.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
 gi|310764880|gb|ADP09830.1| Flagellar motor switch protein FliN [Erwinia sp. Ejp617]
          Length = 124

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +LI++IPVKM + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE
Sbjct: 38  SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 97

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + ++ +    FG+R+ +I+ 
Sbjct: 98  VVVVSD---KFGIRITDIIT 114


>gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
 gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
 gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
 gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
 gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
 gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
 gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
 gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
 gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
 gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1]
 gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
 gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN
 gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi]
 gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi]
 gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
 gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
 gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
 gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
 gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
 gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
 gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
 gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
 gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
 gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1]
 gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
 gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40]
          Length = 113

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF L+M++ +++ + LG    +I +++ +S+G +ITLDK  GE VDI +N + +AKGE+ 
Sbjct: 35  NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVV 94

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+ EI+  +
Sbjct: 95  VIDE---NFGVRITEIIKTK 111


>gi|32490801|ref|NP_871055.1| hypothetical protein WGLp052 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166007|dbj|BAC24198.1| fliN [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 135

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 76/122 (62%), Gaps = 5/122 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           +++ +V    N+ E+   K + + I E  SS   N  +K +++ +LI++IP+KM I LG 
Sbjct: 11  IKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKN--KKLSEDINLILDIPIKMTIELGR 68

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             M I +L+ L +  ++TLD  +GE +DI IN+  +A+GE+ +M+E    +G+++++I+ 
Sbjct: 69  TKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKE---RYGIKILDIIT 125

Query: 146 AQ 147
            +
Sbjct: 126 PE 127


>gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
 gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
          Length = 138

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+G
Sbjct: 51  SLQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 110

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    FGVR+ +I+ 
Sbjct: 111 EVVVVAD---KFGVRITDIIT 128


>gi|329888111|ref|ZP_08266709.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
 gi|328846667|gb|EGF96229.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
          Length = 110

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           EKS  +   + ++PV +  +LG   M ++ L+ L+KG V+ LD++VGE++DI +NN+ +A
Sbjct: 25  EKSAVDLAPVFDVPVNISAVLGKANMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLVA 84

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ ++E+     GV + EI+  +
Sbjct: 85  RGEVVVVED---RLGVTMTEIIKTE 106


>gi|326403666|ref|YP_004283748.1| flagellar motor switch protein FliN [Acidiphilium multivorum
           AIU301]
 gi|325050528|dbj|BAJ80866.1| flagellar motor switch protein FliN [Acidiphilium multivorum
           AIU301]
          Length = 106

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           ++ + + + + ++PV +  +LG   MQ+S L+ L +G V+ LD++ G+ +DI +NN+ IA
Sbjct: 21  QRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIA 80

Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
           +GE+ ++  D+T  G+ + EI+ +
Sbjct: 81  RGEVVML--DETKLGITMTEIVKS 102


>gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a]
 gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
 gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
 gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1]
          Length = 113

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF L+M++ +++ + LG    +I +++ +S+G +ITLDK  GE VDI +N + +AKGE+ 
Sbjct: 35  NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVV 94

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+ EI+  +
Sbjct: 95  VIDE---NFGVRITEIIKTK 111


>gi|292489154|ref|YP_003532041.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|292900272|ref|YP_003539641.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291200120|emb|CBJ47246.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291554588|emb|CBA22222.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
          Length = 124

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +LI++IPVKM + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE
Sbjct: 38  SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 97

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + ++ +    FG+R+ +I+ 
Sbjct: 98  VVVVSD---KFGIRITDIIT 114


>gi|75674794|ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255]
 gi|74419664|gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 116

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +   + + + ++PV++  +LG   M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+
Sbjct: 34  RVASDLEAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVAR 93

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ ++E+     GV + EI+ A+
Sbjct: 94  GEVVLVED---KLGVTMTEIIKAE 114


>gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 109

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +KS  +   + ++PV +  +LG   M ++ L+ L++G V+ LD++VGE++DI +NN+ +A
Sbjct: 24  DKSAADLATVFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNNRLVA 83

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ ++E+     GV + EI+  +
Sbjct: 84  RGEVVVVED---RLGVTMTEIIKTE 105


>gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146]
 gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella
           ictaluri 93-146]
          Length = 137

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLIM+IPVK+ + LG   M I  L+ LS+G V+ LD   GE +D+ IN   IA+G
Sbjct: 50  SGQDIDLIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQG 109

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    FGVR+ +I+ 
Sbjct: 110 EVVVVND---KFGVRITDIIT 127


>gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
 gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
          Length = 116

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           KS  + + + ++PV +  +LG+  M + +L+ L  G V+ LD++VGE++DI +NN+ +A+
Sbjct: 35  KSAADLEQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNNRLVAR 94

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ ++EE     GV + EI+ +
Sbjct: 95  GEVVLVEE---RLGVTMTEIVKS 114


>gi|85713558|ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85699462|gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 116

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +   + + + ++PV++  +LG   M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+
Sbjct: 34  RVASDLEAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVAR 93

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ ++E+     GV + EI+ A+
Sbjct: 94  GEVVLVED---KLGVTMTEIIKAE 114


>gi|167464155|ref|ZP_02329244.1| flagellar motor switch protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382381|ref|ZP_08056288.1| flagellar motor switching and energizing phosphatase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153734|gb|EFX46109.1| flagellar motor switching and energizing phosphatase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 415

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+++IP+K+ + LG     I +++ L +G ++ LDK  GE VDI +NN+ IAKGE+ 
Sbjct: 332 NLNLLLDIPLKVTVELGRTNKMIKDILELQQGSIVELDKLAGEPVDILVNNKLIAKGEVV 391

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E+   FGVRV +I++
Sbjct: 392 VIDEN---FGVRVTDIVS 406


>gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 127

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +LI++IPVKM + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE
Sbjct: 41  SDEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGE 100

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + ++ +    FG+R+ +I+ 
Sbjct: 101 VVVVSD---KFGIRITDIIT 117


>gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
           4541]
 gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
           4541]
          Length = 138

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 4/88 (4%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D  N L + +D  DLIM+IPV++ + LG   M I  L++LS+G V++LD   GE +DI I
Sbjct: 44  DGQNPLNQFSD-VDLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILI 102

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           N   IA+GE+ ++ +   ++G+R+ +I+
Sbjct: 103 NGYLIAQGEVVVVSD---NYGIRITDII 127


>gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018]
          Length = 395

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+++ ++LG     I +++NL  G +I LDK   E V+I +N +K+A GE+ 
Sbjct: 311 NIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVV 370

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+  I+N++
Sbjct: 371 VVDE---NFGVRITSIVNSE 387


>gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC
           824]
 gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain
           [Clostridium acetobutylicum ATCC 824]
          Length = 413

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+++ ++LG     I +++NL  G +I LDK   E V+I +N +K+A GE+ 
Sbjct: 329 NIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVV 388

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+  I+N++
Sbjct: 389 VVDE---NFGVRITSIVNSE 405


>gi|91978306|ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5]
 gi|91684762|gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5]
          Length = 116

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 64/106 (60%), Gaps = 7/106 (6%)

Query: 46  DVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           D+++   P+ +D     E+ T     + + + ++PV++  +LG   M +  L+ L  G V
Sbjct: 12  DLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAV 71

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A+
Sbjct: 72  LELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114


>gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
           12168]
 gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
           12168]
          Length = 396

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++ ++M + LG    QI  ++ + +G +I LDK  GE VDI +N++ IAKGE+ 
Sbjct: 315 NIGLIMDVYMEMTVELGRTKKQIKEILGMGEGTIIELDKLAGEPVDILVNHKPIAKGEVV 374

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E+   FGVRV EIL+
Sbjct: 375 VIDEN---FGVRVTEILS 389


>gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus nematophila ATCC 19061]
          Length = 135

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 51  DIDLIMDIPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 110

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +G+R+ +I+ 
Sbjct: 111 VVSD---KYGIRITDIIT 125


>gi|92116306|ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14]
 gi|91799200|gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14]
          Length = 116

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + ++PV++  +LG   M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ 
Sbjct: 38  DLEAVFDVPVQVSAVLGRSKMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVV 97

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E+     GV + EI+ A+
Sbjct: 98  LVED---KLGVTMTEIIKAE 114


>gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
          Length = 110

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 56/84 (66%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+  + + + ++PV +  +LGS  M I +L+ L+ G V+ LD++VGE++D+ +NN+ +A+
Sbjct: 30  KTAADLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVAR 89

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ ++E+     GV + EI+  +
Sbjct: 90  GEVVLVED---RLGVTMTEIVKGE 110


>gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
 gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
          Length = 138

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 8/126 (6%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKSTDNFDLIMNIPVK 78
           ++P   TN  S    +E L Q+   ++ S    +    D  N L + +D  +LIM+IPV+
Sbjct: 6   NSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSD-INLIMDIPVR 64

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L++LS+G V++LD   GE +DI IN   IA+GE+ ++ +   ++G+
Sbjct: 65  LSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGI 121

Query: 139 RVIEIL 144
           R+ +I+
Sbjct: 122 RITDII 127


>gi|83747641|ref|ZP_00944677.1| FliN [Ralstonia solanacearum UW551]
 gi|207739722|ref|YP_002258115.1| flagellar motor switch protein flin [Ralstonia solanacearum
           IPO1609]
 gi|83725693|gb|EAP72835.1| FliN [Ralstonia solanacearum UW551]
 gi|206593104|emb|CAQ60010.1| flagellar motor switch protein flin [Ralstonia solanacearum
           IPO1609]
          Length = 154

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +D+ ++ +P+  D         ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 47  DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+ 
Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 144


>gi|315497631|ref|YP_004086435.1| flagellar motor switch protein flin [Asticcacaulis excentricus CB
           48]
 gi|315415643|gb|ADU12284.1| flagellar motor switch protein FliN [Asticcacaulis excentricus CB
           48]
          Length = 110

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+  +   + ++PV +  +LG   M +S L+ L +G V+ LD++VGE++DI +NN+ +A+
Sbjct: 26  KAAADLAPVFDVPVNISAVLGKAYMSVSQLLKLGQGSVLELDRKVGEAIDIYVNNRLVAR 85

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ +++E     GV + EI+ ++
Sbjct: 86  GEVVVVDE---RLGVTMTEIIKSE 106


>gi|207728360|ref|YP_002256754.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
 gi|206591606|emb|CAQ57218.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
          Length = 154

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +D+ ++ +P+  D         ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 47  DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+ 
Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 144


>gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
 gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
          Length = 188

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 58/87 (66%), Gaps = 4/87 (4%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           ++N +E ++D  D+IM+IPV++ + LG   + I N++ L +G V+ LD   GE +DI +N
Sbjct: 93  ADNAIENNSD-IDMIMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVN 151

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144
              IA+GE+ +++E    +G+RV +I+
Sbjct: 152 GYLIAQGEVVVVDE---KYGIRVTDII 175


>gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70]
 gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. WCH70]
          Length = 401

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  L++++P+++ + LG     +  +++LS G +I LDK  GE VDI +NN+ IAKGE+ 
Sbjct: 318 NLSLLLDVPLQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVV 377

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV +I++
Sbjct: 378 VIDE---NFGVRVTDIIS 392


>gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. G11MC16]
 gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. G11MC16]
          Length = 394

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 9/108 (8%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +E  IQ  D     +P       +      N +L+ ++P+++ + LG     +  ++ LS
Sbjct: 287 AERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLS 340

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            G +I LDK  GE VDI +NN+ IAKGE+ +++E+   FGVR+ +I++
Sbjct: 341 AGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDEN---FGVRITDIVS 385


>gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
 gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
          Length = 360

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           + T N  L+M++ + M + LG   M I +++ L +G +I L K  GE VD+ +N + IAK
Sbjct: 272 QGTGNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAK 331

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ +++E   +FGVRV +I+N
Sbjct: 332 GEVVVIDE---NFGVRVTDIIN 350


>gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 393

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 9/108 (8%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +E  IQ  D     +P       +      N +L+ ++P+++ + LG     +  ++ LS
Sbjct: 286 AERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLS 339

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            G +I LDK  GE VDI +NN+ IAKGE+ +++E+   FGVR+ +I++
Sbjct: 340 AGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDEN---FGVRITDIVS 384


>gi|313905142|ref|ZP_07838511.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Eubacterium cellulosolvens 6]
 gi|313470045|gb|EFR65378.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Eubacterium cellulosolvens 6]
          Length = 578

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 66/110 (60%), Gaps = 3/110 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           N +    Q N + ++  P  +D  +  E+  DN +++M +P+++ + +G     I +++ 
Sbjct: 464 NQARAAKQNNTIRSLKSPQYTDVPDGGEEVDDNREMLMKVPMEISVEVGRTRKPIKDILE 523

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           L++G ++ LDK  GE  D+ +N + IA G+I ++E+   +FG+R+ EILN
Sbjct: 524 LTQGSLVVLDKMAGEQADLYVNGECIAHGDIVVVED---NFGIRITEILN 570


>gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 398

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D++++IP+++ + LG     I +++ L++G +I LDK  GE VDI +N + IAKGE+ 
Sbjct: 316 NLDMLLDIPLEVTVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIAKGEVV 375

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV +I++
Sbjct: 376 VIDE---NFGVRVTDIVS 390


>gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
           30120]
 gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
           30120]
          Length = 138

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 8/111 (7%)

Query: 38  SEMLIQKNDVDNISEPI----SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           +E L Q+   ++ S  +    S D  N L + +D  D+IM+IPV++ + LG   M I  L
Sbjct: 21  AEALEQQKQAESASAGMQNFDSLDGQNPLTQLSD-VDMIMDIPVRLSVELGRTKMTIKKL 79

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           ++LS+G V++LD   GE +DI IN   IA+GE+ ++ +   ++G+R+ +I+
Sbjct: 80  LSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIRITDII 127


>gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8]
          Length = 154

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E  +D  +L+++IP+K+ + LG   M +  ++ +  G +I LDK  GE VDI +N + IA
Sbjct: 65  EVPSDKLELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 124

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ ++   D +FGVR+ EI++ +
Sbjct: 125 RGEVVVI---DENFGVRITEIVSPK 146


>gi|119953076|ref|YP_945285.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
 gi|119861847|gb|AAX17615.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
          Length = 114

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF L+M++ +++ + LG    +I +++ +S+G +ITLDK  GE VDI +N + IAKGE+ 
Sbjct: 36  NFGLLMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVIAKGEVV 95

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+ EI+  +
Sbjct: 96  VIDE---NFGVRITEIIKIK 112


>gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
 gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
          Length = 113

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF L+M++ +++ + LG    +I +++ +S+G +ITLDK  GE VDI +N + +A+GE+ 
Sbjct: 35  NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVV 94

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+ EI+  +
Sbjct: 95  VIDE---NFGVRITEIIKTK 111


>gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
           12563]
 gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
           12563]
          Length = 359

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           + T N  L+M++ + M + LG   M I +++ L +G +I L K  GE VD+ +N + IAK
Sbjct: 271 QGTGNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAK 330

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ +++E   +FGVRV +I+N
Sbjct: 331 GEVVVIDE---NFGVRVTDIIN 349


>gi|94264048|ref|ZP_01287848.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
 gi|94266366|ref|ZP_01290065.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
 gi|93453018|gb|EAT03506.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
 gi|93455559|gb|EAT05746.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
          Length = 136

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N D ++++P+++ + LG   M I+ L+ L++G V+ LDK  G SV+I +N + + KGE
Sbjct: 51  TQNLDFLLDVPLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGE 110

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + ++ E    FG+RV EI++
Sbjct: 111 VVVVNE---RFGIRVTEIIS 127


>gi|312173312|emb|CBX81567.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
           BAA-2158]
          Length = 93

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +LI++IPVKM + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE
Sbjct: 7   SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 66

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + ++ +    FG+R+ +I+ 
Sbjct: 67  VVVVSDK---FGIRITDIIT 83


>gi|300696947|ref|YP_003747608.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum CFBP2957]
 gi|299073671|emb|CBJ53191.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum CFBP2957]
          Length = 163

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +D+ ++ +P+  D         ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 56  DDIHSVFKPLVIDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 115

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+ 
Sbjct: 116 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 153


>gi|86748400|ref|YP_484896.1| flagellar motor switch protein [Rhodopseudomonas palustris HaA2]
 gi|86571428|gb|ABD05985.1| Flagellar motor switch FliN [Rhodopseudomonas palustris HaA2]
          Length = 116

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + ++PV++  +LG   M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ 
Sbjct: 38  DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVV 97

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E+     GV + EI+ A+
Sbjct: 98  LVED---KLGVTMTEIIKAE 114


>gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 395

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  L++++P+++ + LG     +  ++ LS G +I LDK  GE VDI +NN+ IAKGE+ 
Sbjct: 312 NLSLLLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVV 371

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV +I++
Sbjct: 372 VIDE---NFGVRVTDIIS 386


>gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr]
 gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04]
 gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr]
 gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04]
          Length = 113

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF L+M++ +++ + LG    +I +++ +S+G +ITLDK  GE VDI +N + +A+GE+ 
Sbjct: 35  NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVV 94

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+ EI+  +
Sbjct: 95  VIDE---NFGVRITEIIKTK 111


>gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
 gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
          Length = 157

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 57/86 (66%), Gaps = 3/86 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           NN+L  + ++ D+I++IPV++ + LG   + I NL+ L++G VI LD   GE +D+ +N 
Sbjct: 64  NNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPMDVLVNG 123

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEIL 144
             IA+GE+ ++ E    FG+R+ +I+
Sbjct: 124 CLIAQGEVVVVNE---KFGIRLTDII 146


>gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
 gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus bovienii SS-2004]
          Length = 135

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 51  DIDLIMDIPVKLSVELGRTKMTIKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVV 110

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +G+R+ +I+ 
Sbjct: 111 VVSD---KYGIRITDIIT 125


>gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
 gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
 gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
 gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
          Length = 113

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF L+M++ +++ + LG    +I +++ +S+G +ITLDK  GE VDI +N + +A+GE+ 
Sbjct: 35  NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVV 94

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+ EI+  +
Sbjct: 95  VIDE---NFGVRITEIIKTK 111


>gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y4.1MC1]
 gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y4.1MC1]
          Length = 395

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  L++++P+++ + LG     +  ++ LS G +I LDK  GE VDI +NN+ IAKGE+ 
Sbjct: 312 NLSLLLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVV 371

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E+   FGVRV +I++
Sbjct: 372 VIDEN---FGVRVTDIIS 386


>gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 399

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI+++P+++ + LG     I ++++L+KG ++ LDK  GE VDI +N + +AKGE+ 
Sbjct: 316 NIGLILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 375

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+ EI++
Sbjct: 376 VIDE---NFGVRITEIVS 390


>gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 381

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 55/79 (69%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +LI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  N + IAKGE+
Sbjct: 297 ENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEV 356

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E+   FGVR+I+I++
Sbjct: 357 VVIDEN---FGVRIIDIVH 372


>gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
 gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
 gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
 gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
          Length = 115

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+  + + + ++PV +  +LGS  M I +L+ L  G V+ LD++VGE++DI +NN+ +A+
Sbjct: 34  KNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVAR 93

Query: 124 GEITIMEEDDTHFGVRVIEIL 144
           GE+ ++EE     GV + EI+
Sbjct: 94  GEVVLVEE---RLGVTMTEII 111


>gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP]
          Length = 366

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 22/161 (13%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQD-TNVSSPTNN-------------SEMLIQKND 46
            +KK+ ++ +    +E +      P  D T+ S PT+              +   +Q  D
Sbjct: 207 FVKKLYELIFGTPTVEQKQASAPAPGTDQTSASKPTSFVPPTPKREEKQAVAARPVQFED 266

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
                +P  S+   IL+   +   L+ ++P+ + + LG   + +  ++ L  G +I LDK
Sbjct: 267 FGRTQQP--SEKPQILD---ERLQLLFDVPLNVTVELGRTKLALKEIMELGVGSLIELDK 321

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
             GE VDI +NN+ IA+GE+ +++E   +FGVR+ EI+N +
Sbjct: 322 LTGEPVDIYVNNKLIARGEVVVIDE---NFGVRITEIVNPK 359


>gi|197104325|ref|YP_002129702.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
           HLK1]
 gi|196477745|gb|ACG77273.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
           HLK1]
          Length = 111

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +K+  +   + ++PV +  +LG   + ++ L+ L++G V+ LD++VGE++DI +NN+ +A
Sbjct: 26  DKTAGDLAPVFDVPVSISAVLGRSTLSVAQLLQLAQGSVLELDRKVGEAIDIYVNNRLVA 85

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE+ I++E     GV + EI+ 
Sbjct: 86  RGEVVIVDE---RLGVTMTEIIK 105


>gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 397

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI+++P+++ + LG     I  +++L+KG ++ LDK  GE+VDI +N + +AKGE+ 
Sbjct: 314 NIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGETVDIMVNGKYLAKGEVV 373

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+ EI++
Sbjct: 374 VIDE---NFGVRITEIVS 388


>gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103]
 gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103]
 gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355]
          Length = 137

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLIM+IPVK+ + LG   M I  L+ L++G V++LD   GE +DI IN   IA+G
Sbjct: 50  SLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQG 109

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    +GVR+ +I+ 
Sbjct: 110 EVVVVND---KYGVRITDIIT 127


>gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
 gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
          Length = 136

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+G
Sbjct: 49  SLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 108

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    +GVR+ +I+ 
Sbjct: 109 EVVVVND---KYGVRITDIIT 126


>gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9]
 gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter italicus Ab9]
          Length = 375

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 55/79 (69%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +LI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  N + IAKGE+
Sbjct: 291 ENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEV 350

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E   +FGVR+I+I++
Sbjct: 351 VVIDE---NFGVRIIDIVH 366


>gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
           43541]
 gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
           43541]
          Length = 393

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI+++P+++ + LG     I ++++L+KG ++ LDK  GE VDI +N + +AKGE+ 
Sbjct: 310 NIGLILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 369

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+ EI++
Sbjct: 370 VIDE---NFGVRITEIVS 384


>gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
 gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
          Length = 395

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI+++P+++ + LG     I ++++L+KG ++ LDK  GE VDI +N + +AKGE+ 
Sbjct: 312 NIGLILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 371

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+ EI++
Sbjct: 372 VIDE---NFGVRITEIVS 386


>gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
           BAA-2158]
          Length = 133

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 12/108 (11%)

Query: 47  VDNISEPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
            D ++E   S S + + KS D         + D+IM+IPVK+ + LG   M I  L+ LS
Sbjct: 19  ADAMNEQAKSPSGDGVFKSLDGGEHAAGLQDIDMIMDIPVKLTVELGRTKMTIKELLRLS 78

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I+ 
Sbjct: 79  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIIT 123


>gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica
           W22703]
          Length = 138

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 54  DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 114 VVAD---KYGVRITDIIT 128


>gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3]
 gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. C56-T3]
          Length = 393

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D+  +      N +L+ ++P+++ + LG     +  ++ LS G +I LDK  GE VD+ +
Sbjct: 299 DAPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFV 358

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           NN+ IAKGE+ +++E   +FGVR+ +I++
Sbjct: 359 NNKLIAKGEVVVIDE---NFGVRITDIIS 384


>gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
 gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
          Length = 138

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 54  DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    +GVR+ +I+ +
Sbjct: 114 VVAD---KYGVRITDIITS 129


>gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10]
 gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
 gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
 gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1]
 gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
 gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
 gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10]
 gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
 gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
 gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
 gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
 gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004]
 gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038]
 gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 138

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 54  DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    +GVR+ +I+ +
Sbjct: 114 VVAD---KYGVRITDIITS 129


>gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
 gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
          Length = 138

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           + S  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA
Sbjct: 49  QGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIA 108

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE+ ++ +    +GVR+ +I+ 
Sbjct: 109 QGEVVVVSD---KYGVRITDIIT 128


>gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61]
 gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC52]
 gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC61]
 gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC52]
          Length = 393

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D+  +      N +L+ ++P+++ + LG     +  ++ LS G +I LDK  GE VD+ +
Sbjct: 299 DAPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFV 358

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           NN+ IAKGE+ +++E   +FGVR+ +I++
Sbjct: 359 NNKLIAKGEVVVIDE---NFGVRITDIIS 384


>gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
 gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
          Length = 393

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D+  +      N +L+ ++P+++ + LG     +  ++ LS G +I LDK  GE VD+ +
Sbjct: 299 DAPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFV 358

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           NN+ IAKGE+ +++E   +FGVR+ +I++
Sbjct: 359 NNKLIAKGEVVVIDE---NFGVRITDIIS 384


>gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
 gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
          Length = 385

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D++++IP+++ + LG     +  ++ LS G +I LDK  GE VDI IN++ IAKGE+ 
Sbjct: 302 NLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKLIAKGEVV 361

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E+   FGVRV +I++
Sbjct: 362 VIDEN---FGVRVTDIIS 376


>gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
 gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
          Length = 385

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D++++IP+++ + LG     +  ++ LS G +I LDK  GE VDI IN++ IAKGE+ 
Sbjct: 302 NLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKLIAKGEVV 361

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV +I++
Sbjct: 362 VIDE---NFGVRVTDIIS 376


>gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
 gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
          Length = 133

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + D+IM+IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+G
Sbjct: 46  SLQDIDMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 105

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+ ++ +    +GVR+ +I+
Sbjct: 106 EVVVVAD---KYGVRITDII 122


>gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
 gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ]
          Length = 155

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 6/102 (5%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           +N   N+ +P+   +     +   + D+IM+IPVK+ + LG   + I  L+ L++G V+ 
Sbjct: 50  QNAGQNVFKPLGKSATA---EGMRDLDMIMDIPVKLSVELGRTRITIKQLLELAQGSVVE 106

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           LD   GE +DI IN   IA+GE+ ++   D  +G+R+ EI+ 
Sbjct: 107 LDGLAGEPMDILINGYLIAQGEVVVV---DDKYGIRITEIIT 145


>gi|300693351|ref|YP_003749324.1| flagellar motor switching and energizing component. flin/mopa/spao
           family [Ralstonia solanacearum PSI07]
 gi|299075388|emb|CBJ34683.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum PSI07]
          Length = 169

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 63/101 (62%), Gaps = 4/101 (3%)

Query: 45  NDVDNISEP-ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           ND++++ +P +  DS        ++ D+I++IPV++ + LG   + I NL+ L++G V+ 
Sbjct: 61  NDINSVFKPLVVDDSKKPSPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVE 120

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           LD   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+
Sbjct: 121 LDALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDII 158


>gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
 gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
          Length = 370

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 62/95 (65%), Gaps = 6/95 (6%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           EP+S     ++ +S  N DLI+++P+++ ++LG     I ++++LS G +I LDK   E 
Sbjct: 274 EPLS---QGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEP 330

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           V++ IN +KIA GE+ +++E   +FGVR+  I++ 
Sbjct: 331 VEVLINGKKIAYGEVVVVDE---NFGVRITSIVSG 362


>gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937]
 gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937]
          Length = 138

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           + S  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA
Sbjct: 49  QGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIA 108

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE+ ++ +    +GVR+ +I+ 
Sbjct: 109 QGEVVVVSD---KYGVRITDIIT 128


>gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum
           SL003B-26A1]
 gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum
           SL003B-26A1]
          Length = 112

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +S  + + + ++PV++  +LG   M +S+L+ L+ G V+ LD++VGE++DI +N++ +A+
Sbjct: 31  QSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLAAGTVLELDRKVGEAIDIYVNDRLVAR 90

Query: 124 GEITIMEEDDTHFGVRVIEIL 144
           GE+ ++E+     GV + EI+
Sbjct: 91  GEVVLVED---KLGVTMTEII 108


>gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 139

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 55  DIDLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 114

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +G+R+ +I+ 
Sbjct: 115 VVSD---KYGIRITDIIT 129


>gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 375

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S    DLI +IPV++ + LG     I  ++N+S G V+ L++  GE VD+ +N + IA+G
Sbjct: 288 SASAIDLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEPVDVLVNGKLIARG 347

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ +++E   +FGVRV EI++
Sbjct: 348 EVVVIDE---NFGVRVTEIVS 365


>gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda]
          Length = 134

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +D+ IN   IA+G
Sbjct: 47  SGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQG 106

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    FGVR+ +I+ 
Sbjct: 107 EVVVVND---KFGVRITDIIT 124


>gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
 gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
          Length = 138

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           + S  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA
Sbjct: 49  QGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIA 108

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE+ ++ +    +GVR+ +I+ 
Sbjct: 109 QGEVVVVSD---KYGVRITDIIT 128


>gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC
           35405]
 gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola]
 gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC
           35405]
          Length = 393

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           ++   N  LIM++ ++M + LG     I  ++ + +G +I LDK  GE VD+ +N++ IA
Sbjct: 306 QEEQGNIGLIMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIA 365

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           KGE+ ++EE    FGVR+ EIL+
Sbjct: 366 KGEVVVIEES---FGVRITEILS 385


>gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402]
          Length = 393

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           ++   N  LIM++ ++M + LG     I  ++ + +G +I LDK  GE VD+ +N++ IA
Sbjct: 306 QEEQGNIGLIMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIA 365

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           KGE+ ++EE    FGVR+ EIL+
Sbjct: 366 KGEVVVIEES---FGVRITEILS 385


>gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
 gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
          Length = 136

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           +  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+G
Sbjct: 49  TAQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 108

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    +GVR+ +I+ 
Sbjct: 109 EVVVVAD---KYGVRITDIIT 126


>gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           32953]
 gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           32953]
 gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
          Length = 138

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 54  DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 114 VVAD---KYGVRITDIIT 128


>gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617]
          Length = 133

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 12/108 (11%)

Query: 47  VDNISEPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
            D +SE   S S + + KS +         + D+IM+IPVK+ + LG   M I  L+ LS
Sbjct: 19  ADAMSEQTQSPSGDGVFKSLNGGEHSAGLQDIDMIMDIPVKLTVELGRTKMTIKELLRLS 78

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I+ 
Sbjct: 79  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIIT 123


>gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16]
 gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16]
          Length = 395

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 58/83 (69%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    N D++++IP+++++ LG     I  ++++++G +I LDK  GE VD+ IN++ IA
Sbjct: 307 EAEMQNLDMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLAGEPVDVLINDKLIA 366

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           KGE+ +++E   +FGVR+ +I++
Sbjct: 367 KGEVVVIDE---NFGVRITDIVS 386


>gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 137

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetohalobium arabaticum DSM 5501]
 gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetohalobium arabaticum DSM 5501]
          Length = 408

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E+     DLI ++P+++ + LG   M I +++ L  G VI LDK  GESVD+ +N + IA
Sbjct: 321 EQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELGNGSVIELDKLAGESVDLLVNGKLIA 380

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           KGE+ +++E   +FG RV +I++
Sbjct: 381 KGEVVVIDE---NFGFRVTDIVS 400


>gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661]
 gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
          Length = 133

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 4/91 (4%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S +SN+I   S  + DLIM+IPVK+ + LG   M I  L+ L++G V++L+   GE +DI
Sbjct: 37  SLESNDI-TGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLEGLAGEPLDI 95

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            IN   IA+GE+ ++ +    +GVR+ +I+ 
Sbjct: 96  LINGYLIAQGEVVVVAD---KYGVRITDIIT 123


>gi|296535009|ref|ZP_06897289.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
 gi|296264664|gb|EFH11009.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
          Length = 93

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 2/75 (2%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           IM+IPV +Q++LG+  + ++ L NLS+G VI  DK+VGE +D+  N + IA+GEI I   
Sbjct: 19  IMDIPVNVQVVLGNKRLPMAALFNLSRGSVIEFDKKVGEPIDLMANERLIARGEIQIT-- 76

Query: 132 DDTHFGVRVIEILNA 146
           DD    + + EI+++
Sbjct: 77  DDGRLSISITEIVSS 91


>gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
 gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
          Length = 137

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
 gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
          Length = 137

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
           493-89]
 gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
           H 2687]
          Length = 137

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
 gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
          Length = 137

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein
           [Edwardsiella tarda EIB202]
 gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein
           [Edwardsiella tarda EIB202]
 gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60]
          Length = 137

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +D+ IN   IA+G
Sbjct: 50  SGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQG 109

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+ ++ +    FGVR+ +I+
Sbjct: 110 EVVVVND---KFGVRITDII 126


>gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 137

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
           43531]
 gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
           43531]
          Length = 396

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI+++P+++ + LG     I  +++L+KG ++ LDK  GE VDI +N + +AKGE+ 
Sbjct: 313 NIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 372

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+ EI++
Sbjct: 373 VIDE---NFGVRITEIVS 387


>gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
 gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
          Length = 136

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 52  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVV 111

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 112 VVAD---KYGVRITDIIT 126


>gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN
 gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 137

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804]
 gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii]
          Length = 181

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM++PV++ + LG   + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ 
Sbjct: 95  DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 154

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++EE    +G+R+ +I+
Sbjct: 155 VVEE---KYGIRLTDII 168


>gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
 gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
          Length = 124

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 40  DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 99

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    +GVR+ +I+ +
Sbjct: 100 VVAD---KYGVRITDIITS 115


>gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
 gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
          Length = 137

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
           35316]
 gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
           35316]
          Length = 137

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 124

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 40  DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 99

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 100 VVAD---KYGVRITDIIT 114


>gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC
           35469]
 gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia
           fergusonii ATCC 35469]
 gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253]
 gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227]
          Length = 137

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|39934342|ref|NP_946618.1| flagellar motor switch protein [Rhodopseudomonas palustris CGA009]
 gi|192289870|ref|YP_001990475.1| flagellar motor switch protein [Rhodopseudomonas palustris TIE-1]
 gi|316935485|ref|YP_004110467.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           DX-1]
 gi|39648190|emb|CAE26710.1| putative flagellar motor switch protein [Rhodopseudomonas palustris
           CGA009]
 gi|192283619|gb|ACE99999.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           TIE-1]
 gi|315603199|gb|ADU45734.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           DX-1]
          Length = 115

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + ++PV++  +LG   M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ 
Sbjct: 38  DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVV 97

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++E+     GV + EI+ A
Sbjct: 98  LVED---KLGVTMTEIIKA 113


>gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863]
 gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
 gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v]
          Length = 137

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|254294568|ref|YP_003060591.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
 gi|254043099|gb|ACT59894.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
          Length = 115

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 62/97 (63%), Gaps = 4/97 (4%)

Query: 50  ISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           +++PIS++       K   +   + ++PV +Q ++G   M++S L++L +G V+ LD+RV
Sbjct: 18  LAKPISAEEEAERREKFAADLAPMFDVPVSVQAVIGRTTMEVSELMHLGEGSVLELDRRV 77

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           GE++DI +N++ +A+GEI ++   D   GV + EI+ 
Sbjct: 78  GEAIDIYVNSRLVARGEIVVV---DDRLGVTMTEIIK 111


>gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185]
 gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185]
          Length = 137

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7
           EDL933]
 gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           Sakai]
 gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS]
 gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC869]
 gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC508]
 gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
 gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A]
 gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22]
 gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019]
 gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171]
 gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
 gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11]
 gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1]
 gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a]
 gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989]
 gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B]
 gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O103:H2 str. 12009]
 gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O26:H11 str. 11368]
 gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O111:H- str. 11128]
 gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           CB9615]
 gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088]
 gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
 gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
 gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
 gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
 gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
 gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
 gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
 gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
 gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
 gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
 gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
 gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
 gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W]
 gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
 gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143]
 gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271]
 gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280]
 gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591]
 gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299]
 gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing,
           enabling rotation and determining its direction
           [Escherichia coli O157:H7 str. EDL933]
 gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           Sakai]
 gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS]
 gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
 gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC869]
 gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC508]
 gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A]
 gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22]
 gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019]
 gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171]
 gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
 gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11]
 gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia
           coli 55989]
 gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia
           coli IAI1]
 gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia
           coli ED1a]
 gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. TW14359]
 gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O26:H11 str. 11368]
 gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O103:H2 str. 12009]
 gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O111:H- str. 11128]
 gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042]
 gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088]
 gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
 gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
 gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
 gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
 gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
 gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
 gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
 gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
 gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
 gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
 gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
 gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
 gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W]
 gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
 gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407]
 gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia
           coli W]
 gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1]
 gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC
           74-1112]
 gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B]
 gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           G5101]
 gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14]
 gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010]
 gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68]
 gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11]
 gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520]
 gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482]
 gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120]
 gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489]
 gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007]
 gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3]
 gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167]
 gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           1044]
 gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           1125]
 gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143]
 gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271]
 gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280]
 gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591]
 gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299]
 gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82]
 gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88]
          Length = 137

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G]
 gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180]
 gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357]
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 50  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 110 VVAD---KYGVRITDIIT 124


>gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
 gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
          Length = 124

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 40  DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 99

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 100 VVAD---KYGVRITDIIT 114


>gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
 gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC
           BAA-895]
 gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1]
 gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1]
          Length = 401

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 17/128 (13%)

Query: 18  RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
           +S H  N   + NV  P       +Q     N  +P  S      +  + N D++++IP+
Sbjct: 282 QSQHFGN---NKNVEQPVQ-----VQPASFTNFEQPSMS------KPESKNLDMLLDIPL 327

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
            + + LG     + +++ LS G +I LDK  GE VD+ +N++ IAKGE+ +++E   +FG
Sbjct: 328 NVTVELGRTNRSVKDILELSSGSIIELDKLAGEPVDVLVNSRLIAKGEVVVIDE---NFG 384

Query: 138 VRVIEILN 145
           VR+ +I++
Sbjct: 385 VRITDIVS 392


>gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718]
 gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10]
 gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga naphthophila RKU-10]
          Length = 346

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E  +D  +L+++IP+++ + LG   M +  ++ +  G +I LDK  GE VDI +N + IA
Sbjct: 257 EVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 316

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ +++E   +FGVR+ EI++ +
Sbjct: 317 RGEVVVIDE---NFGVRITEIVSPK 338


>gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227]
 gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
 gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
           2457T]
 gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
 gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
 gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
           2457T]
 gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
 gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017]
 gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str.
           2457T]
 gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71]
 gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671]
 gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218]
 gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272]
 gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304]
 gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 50  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 110 VVAD---KYGVRITDIIT 124


>gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. W3110]
 gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN
 gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli]
 gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia
           coli str. K12 substr. W3110]
 gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1]
 gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|327193026|gb|EGE59938.1| flagellar motor switch protein FliN [Rhizobium etli CNPAF512]
          Length = 56

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 45/54 (83%)

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +NL++G  I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 1   MNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 54


>gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
 gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
 gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDII 126


>gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
 gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
 gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
 gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDII 126


>gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70]
 gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71]
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 50  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 110 VVAD---KYGVRITDIIT 124


>gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74]
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 50  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 110 VVAD---KYGVRITDIIT 124


>gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74]
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 50  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 110 VVAD---KYGVRITDIIT 124


>gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605]
 gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206]
 gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15]
 gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86]
 gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605]
 gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 50  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 110 VVAD---KYGVRITDIIT 124


>gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073]
 gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972]
 gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
 gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
 gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073]
 gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972]
 gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
 gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
 gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972]
 gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
 gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 50  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 110 VVAD---KYGVRITDIIT 124


>gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 127

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           ++  +LI++IPVKM + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE
Sbjct: 41  SEEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGE 100

Query: 126 ITIMEEDDTHFGVRVIEIL 144
           + ++ +    FG+R+ +I+
Sbjct: 101 VVVVSD---KFGIRITDII 116


>gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
 gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1]
 gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88]
 gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
 gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
 gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
 gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1]
 gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia
           coli S88]
 gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
 gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034]
 gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
 gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146]
 gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3]
 gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252]
 gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536]
 gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11]
 gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39]
 gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026]
 gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412]
 gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354]
 gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli
           FVEC1302]
 gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
 gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
 gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101]
 gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
 gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536]
 gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11]
 gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia
           coli IAI39]
 gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia
           coli UMN026]
 gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82]
 gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412]
 gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354]
 gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli
           FVEC1302]
 gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
 gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
 gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101]
 gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
 gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3]
 gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327]
 gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2]
 gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|203284198|ref|YP_002221938.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|203287737|ref|YP_002222752.1| flagellar motor switch protein [Borrelia recurrentis A1]
 gi|201083641|gb|ACH93232.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|201084957|gb|ACH94531.1| flagellar motor switch protein [Borrelia recurrentis A1]
          Length = 114

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF L+M++ +++ + LG    +I +++ +S+G +ITLDK  GE VDI +N + +AKGE+ 
Sbjct: 36  NFGLLMDVSMQVTVELGRTERKIKDILAMSEGTIITLDKLAGEPVDILVNGKIVAKGEVV 95

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+ EI+  +
Sbjct: 96  VIDE---NFGVRITEIIKIK 112


>gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
 gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
          Length = 137

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
            T N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA G
Sbjct: 51  GTPNLDVILDIPVTLSMEVGSTNISIRNLLQLNQGSVIELDRLAGEPLDVMVNGTLIAHG 110

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R+ ++++ Q
Sbjct: 111 EVVVVNE---KFGIRLTDVISPQ 130


>gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 422

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +LIM++P+++ + LG    +I  ++ L  G +I LDK  GE VDI +N + IAKGE+ 
Sbjct: 339 NIELIMDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVV 398

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++   D +FG+R+ EI++
Sbjct: 399 VI---DENFGIRITEIIS 413


>gi|225569964|ref|ZP_03778989.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
           15053]
 gi|225161434|gb|EEG74053.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
           15053]
          Length = 460

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 3/102 (2%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +K  V+ +S+P    S    E    N +LIM +P+++ + +G     + +++ L+KG ++
Sbjct: 354 KKIKVNPVSQPNLEQSAEETELQESNLELIMGVPLEVSVEIGRTKKLVKDVLELNKGSLV 413

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            LDK  GE VD+ +N Q IA+G++ ++   D +FG+R+ EIL
Sbjct: 414 VLDKLAGEQVDLFVNGQCIAQGDVVVV---DDNFGIRITEIL 452


>gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga sp. RQ2]
 gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga sp. RQ2]
          Length = 346

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E  +D  +L+++IP+++ + LG   M +  ++ +  G +I LDK  GE VDI +N + IA
Sbjct: 257 EVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 316

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ +++E   +FGVR+ EI++ +
Sbjct: 317 RGEVVVIDE---NFGVRITEIVSPK 338


>gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 97

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           ST   DL++++P+++ + LG   M I +L+ L+ G VI LDK  GE +DI +N + +A+G
Sbjct: 11  STRRLDLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDILVNGRLVARG 70

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E  ++ +    FGVR+ +I++ Q
Sbjct: 71  EAVVVND---KFGVRITDIVSPQ 90


>gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
           Nor1]
 gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
           Nor1]
          Length = 376

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N +LIM++P+++ + LG     I  ++ L  G V+ LDK  GE VDI +N + IAKG
Sbjct: 290 SDTNINLIMDVPLQVTVELGRTRKLIREILELGPGSVVELDKLAGEPVDILVNGKLIAKG 349

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ +++E   +FGVR+ EI++
Sbjct: 350 EVVVIDE---NFGVRITEIVS 367


>gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 372

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 5/91 (5%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           + +D   + EK  +N +LIM+IP+ + + LG     I +++ L++G +I LDK  GE VD
Sbjct: 278 LDADEQTVSEK--ENINLIMDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLAGEPVD 335

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           I +N + IAKGE+ +++E   +FGVR+++I+
Sbjct: 336 ILVNGKFIAKGEVVVIDE---NFGVRILDIV 363


>gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88]
 gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88]
          Length = 416

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 9/117 (7%)

Query: 33  SPTNNSEM-LIQKNDVD---NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           SPT + E   +Q+  ++    I +P+   S    E+   N DLIM++P+ + ++LG   +
Sbjct: 294 SPTYHRETPRVQEKPIEVQEAIFQPLQQTSKG--EELPRNIDLIMDVPLDISVVLGRTKL 351

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            I  ++NL  G +I LDK   E V+I +N + +A GE+ +++E   +FGVR+ +I+N
Sbjct: 352 NIKEILNLGTGSLIELDKLAEEPVEILVNGKPVAFGEVVVIDE---NFGVRITDIVN 405


>gi|295690737|ref|YP_003594430.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
 gi|295432640|gb|ADG11812.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
          Length = 110

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           I +K+  +   + ++PV +  +LG   M ++ L+ L +G ++ LD++VGE++DI +NN+ 
Sbjct: 24  IADKTASDLAPVFDVPVNISAVLGRAHMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRL 83

Query: 121 IAKGEITIMEEDDTHFGVRVIEIL 144
           +A+GE+ +++E     GV + EI+
Sbjct: 84  VARGEVVVVDE---RLGVTMTEII 104


>gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
 gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
          Length = 346

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E  +D  +L+++IP+++ + LG   M +  ++ +  G +I LDK  GE VDI +N + IA
Sbjct: 257 EVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 316

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ +++E   +FGVR+ EI++ +
Sbjct: 317 RGEVVVIDE---NFGVRITEIVSPK 338


>gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
           4359]
 gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
           4359]
          Length = 344

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D  +L++++P+K+ + LG   M +  ++ +  G +I LDK  GE VDI +N + IA+GE+
Sbjct: 259 DKLELLLDVPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEV 318

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            ++   D +FGVRV EI++ +
Sbjct: 319 VVI---DENFGVRVTEIVSPK 336


>gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
 gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
          Length = 137

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           +  + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +D+ IN   IA+G
Sbjct: 50  AGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDVLINGYLIAQG 109

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    FGVR+ +I+ 
Sbjct: 110 EVVVVND---KFGVRITDIIT 127


>gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
 gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + D+I++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+G
Sbjct: 51  SLQDIDMILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQG 110

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    +GVR+ +I+ 
Sbjct: 111 EVVVVAD---KYGVRITDIIT 128


>gi|238025699|ref|YP_002909930.1| flagellar motor switch protein FliN [Burkholderia glumae BGR1]
 gi|237874893|gb|ACR27226.1| Flagellar motor switch protein FliN [Burkholderia glumae BGR1]
          Length = 144

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 24/137 (17%)

Query: 24  NPLQDTNVSSPTNNSEM------LIQKNDVDNISEPISSDSNNI-----LEKSTDN---- 68
           NP  +   + P   S +      L ++ND     +PI+S +        L K+  N    
Sbjct: 5   NPTPEGKQAGPGEESSLDDWAAALAEQND-----QPIASGAGGAGVFQPLSKAASNATHN 59

Query: 69  -FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             D+I++IPVKM + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 60  DIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 119

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    FG+R+ +I+
Sbjct: 120 VVND---KFGIRLTDII 133


>gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 378

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 9/118 (7%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCC 87
           + + P   +E   Q   V N+S P+  +S +  E  +  +N +LI+++P+++ + LG   
Sbjct: 263 SYTPPPQRTE---QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQ 318

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             +  ++  S G +I L+K  GE VDI +N + IAKGE+ +++E   +FGVR+ +I+N
Sbjct: 319 KLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 373


>gi|226313057|ref|YP_002772951.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
           100599]
 gi|226096005|dbj|BAH44447.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
           100599]
          Length = 455

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+ +IP+++ + LG     I  +++LS G +I LDK  GE VDI +NN+ IAKGE+ 
Sbjct: 372 NLNLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAKGEVV 431

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E+   FGVRV +I++
Sbjct: 432 VIDEN---FGVRVTDIIS 446


>gi|154252628|ref|YP_001413452.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
           DS-1]
 gi|154156578|gb|ABS63795.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
           DS-1]
          Length = 117

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ++  + + + ++PV +  +LG   +++SNL+ L +G ++ LD++VGE++DI +N++ +A+
Sbjct: 35  RTAQDLEAVFDVPVNVSAVLGKTHIEVSNLLKLGRGAIVELDRKVGEAIDIYVNDRLVAR 94

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ ++   D   GV + EI+  
Sbjct: 95  GEVVVV---DDRLGVTMTEIVKG 114


>gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli
           95/1000]
 gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli
           95/1000]
          Length = 348

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           + T N  L+M++ + M + LG   M I +++ L +G +I L K  GE VD+ +N + IAK
Sbjct: 260 QGTGNIGLLMDVTMNMTVELGRATMTIKDILGLGEGSIIELQKLAGEPVDLLVNGKLIAK 319

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ +++E   +FGVRV +I++
Sbjct: 320 GEVVVIDE---NFGVRVTDIIS 338


>gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
 gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
          Length = 377

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 13/104 (12%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           +Q   + N+  P+ ++  NI         LIM++ +++ + LG   M I +++ + +G +
Sbjct: 279 VQFQPLQNV--PVGTEQGNI--------GLIMDVYMEVTVELGRTRMIIKDILGMGEGHI 328

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I LDK  GE VDI +N++ IAKGE+ +++E+   FGVRV EIL+
Sbjct: 329 IELDKLAGEPVDILVNHKPIAKGEVVVIDEN---FGVRVTEILS 369


>gi|90422463|ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18]
 gi|90104477|gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18]
          Length = 116

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + ++PV++  +LG   M +  L+ L  G V+ LD++VGE++DI +NN+ +A+GE+ 
Sbjct: 38  DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVV 97

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E+     GV + EI+ A+
Sbjct: 98  LVED---KLGVTMTEIIKAE 114


>gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905]
          Length = 137

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|254417867|ref|ZP_05031591.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
 gi|196184044|gb|EDX79020.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
          Length = 110

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +K+  +   +  +PV +  +LG   M ++ L+ L+KG V+ LD++VGE++DI +NN+ IA
Sbjct: 25  DKTAADLATVFEVPVNISAVLGKSHMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLIA 84

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ ++   D   GV + EI+  +
Sbjct: 85  RGEVVVV---DDRLGVTMTEIIKTE 106


>gi|42524696|ref|NP_970076.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
           HD100]
 gi|39576906|emb|CAE78135.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
           HD100]
          Length = 122

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI++IP+K+ + LG   M +S L+NL++G VI L K  GE +++ +N++ IA+GE  
Sbjct: 39  NLSLILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAV 98

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+ +I++
Sbjct: 99  VVNE---KFGVRLTDIIS 113


>gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum
           GMI1000]
 gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia
           solanacearum GMI1000]
          Length = 156

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           N + ++ +P+            ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 49  NPLSSVFKPLMPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 108

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+ 
Sbjct: 109 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 146


>gi|301165894|emb|CBW25467.1| flagellar motor switch protein FliN [Bacteriovorax marinus SJ]
          Length = 131

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 4/116 (3%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
           N S+P  N E  I    V  +S+ I +  + + +    N D I++IP+K+ + LG   + 
Sbjct: 11  NQSNPMANVED-INTARVSQLSDEIKAGDDALNKLKVQNLDFILDIPLKVTVELGRTEVM 69

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I +L+ L +G V+ LDK  GE ++I +N + +AKGE+ ++ E    FG+R+ +I++
Sbjct: 70  IKDLLQLGQGSVLELDKLAGEPLEILVNGKLVAKGEVVVVNE---KFGIRLTDIIS 122


>gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont]
          Length = 136

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+G
Sbjct: 49  SLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQG 108

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    +GVR+ +I+ 
Sbjct: 109 EVVVVND---KYGVRITDIIT 126


>gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
           WPP163]
 gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
           WPP163]
          Length = 137

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVSD---KYGVRITDIMT 127


>gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 383

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+ + ++LG     I +++NLS G +I LDK   E V+I +N +KIA GE+ 
Sbjct: 300 NIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEVV 359

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+  I++
Sbjct: 360 VVDE---NFGVRITSIVS 374


>gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT]
 gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain
           [Clostridium novyi NT]
          Length = 396

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 16/141 (11%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNN---SEMLIQKNDVDNISE-PISSDSNNILEKST 66
           IK +L      ID P      + P N+   S++ +Q+ +   + + PIS    NI     
Sbjct: 260 IKSDLNKAPQQID-PKPAETYTQPQNSVPQSQVSVQRANFAPLDQNPISGVPQNI----- 313

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
              DLI+++P+++ ++LG     I  +++L  G +I LDK   E V+I +N +KIA GE+
Sbjct: 314 ---DLILDVPLEISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPVEIYVNGKKIAYGEV 370

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   +FGVR++ I++ +
Sbjct: 371 VVVDE---NFGVRIVSIVSGE 388


>gi|187478202|ref|YP_786226.1| flagellar motor switch protein [Bordetella avium 197N]
 gi|115422788|emb|CAJ49316.1| flagellar motor switch protein [Bordetella avium 197N]
          Length = 172

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DL+M++PV++ + LG   + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ 
Sbjct: 86  DIDLVMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 145

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++EE    +G+R+ +I+
Sbjct: 146 VVEE---KYGIRLTDII 159


>gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
 gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
          Length = 420

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           + N  ++++IP+++ + LG     I  ++ L +G +I LDK  GE VDI +N + IAKGE
Sbjct: 335 SKNLSMLLDIPLQVTVELGRTKRSIKEILELGQGSIIELDKLAGEPVDILVNQKLIAKGE 394

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + ++EE    FGVRV +I++ +
Sbjct: 395 VVVIEES---FGVRVTDIVSQE 413


>gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514]
 gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X561]
 gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Thermoanaerobacter sp. X513]
 gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514]
 gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X561]
 gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X513]
          Length = 375

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 54/79 (68%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +LI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  N + IAKGE+
Sbjct: 291 ENLELILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEV 350

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E+   FGVR+ +I++
Sbjct: 351 VVIDEN---FGVRITDIVH 366


>gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 370

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 63/99 (63%), Gaps = 11/99 (11%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           + D+  EP +++  NI        +LIM+IP+ + + LG     I +++ L++G +I LD
Sbjct: 274 EFDDEDEPTTAEKENI--------NLIMDIPLNVTVELGRTKKLIKDILELNEGSIIELD 325

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           K  GE VDI +N + IAKGE+ +++E   +FGVR+++I+
Sbjct: 326 KLAGEPVDILVNGKFIAKGEVVVIDE---NFGVRILDIV 361


>gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 375

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)

Query: 43  QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           Q   V N+S P+  +S +  E  +  +N +LI+++P+++ + LG     +  ++  S G 
Sbjct: 270 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 328

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +I L+K  GE VDI +N + IAKGE+ +++E   +FGVR+ +I+N
Sbjct: 329 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 370


>gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str.
           Eklund 17B]
          Length = 385

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+ + ++LG     I +++NLS G +I LDK   E V+I +N +KIA GE+ 
Sbjct: 302 NIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEVV 361

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+  I++
Sbjct: 362 VVDE---NFGVRITSIVS 376


>gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 375

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)

Query: 43  QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           Q   V N+S P+  +S +  E  +  +N +LI+++P+++ + LG     +  ++  S G 
Sbjct: 270 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 328

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +I L+K  GE VDI +N + IAKGE+ +++E   +FGVR+ +I+N
Sbjct: 329 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 370


>gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 376

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)

Query: 43  QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           Q   V N+S P+  +S +  E  +  +N +LI+++P+++ + LG     +  ++  S G 
Sbjct: 271 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 329

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +I L+K  GE VDI +N + IAKGE+ +++E   +FGVR+ +I+N
Sbjct: 330 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 371


>gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
 gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
          Length = 115

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+  + + + ++PV +  +LGS  M I +L+ L  G V+ LD++VGE++DI +NN+ +A+
Sbjct: 34  KNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVAR 93

Query: 124 GEITIMEEDDTHFGVRVIEIL 144
           GE+ +++E     GV + EI+
Sbjct: 94  GEVVLVDE---RLGVTMTEII 111


>gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
 gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
          Length = 343

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +L++++P+K+ + LG   M +  ++ ++ G +I LDK  GE VDI +N + IAKGE
Sbjct: 253 SDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGE 312

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + +++E+   FGVR+ EI+  +
Sbjct: 313 VVVVDEN---FGVRITEIVTPK 331


>gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 378

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)

Query: 43  QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           Q   V N+S P+  +S +  E  +  +N +LI+++P+++ + LG     +  ++  S G 
Sbjct: 273 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 331

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +I L+K  GE VDI +N + IAKGE+ +++E   +FGVR+ +I+N
Sbjct: 332 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 373


>gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum
           SCRI1043]
          Length = 137

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVSD---KYGVRITDIIT 127


>gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae]
          Length = 139

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           +E    + ++IM+IPVK+ + LG   M I  L+NL++G V++LD   GE +DI IN   I
Sbjct: 49  IENQFSDINMIMDIPVKLTVELGRTKMTIKKLLNLTQGSVVSLDGLAGEPLDILINGYLI 108

Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
           A+GE+ ++ +    +G+R+ +I+
Sbjct: 109 AQGEVVVVSD---KYGIRITDII 128


>gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|973195|gb|AAB00544.1| FliY [Treponema pallidum]
 gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 348

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++ +++ + LG   M I +++ + +G +I LDK  GE VDI +N++ IAKGE+ 
Sbjct: 266 NIGLIMDVFMEVTVELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVV 325

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E+   FGVRV EIL+
Sbjct: 326 VIDEN---FGVRVTEILS 340


>gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 137

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 53  DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVSD---KYGVRITDIIT 127


>gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 375

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%)

Query: 43  QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           Q   V N+S P+  +S +  E  +  +N +LI+++P+++ + LG     +  ++  S G 
Sbjct: 270 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 328

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +I L+K  GE VDI +N + IAKGE+ +++E   +FGVR+ +I+N
Sbjct: 329 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 370


>gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein
 gi|71042011|pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein
          Length = 87

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +L+++IP+K+ + LG   M +  ++ +  G +I LDK  GE VDI +N + IA+GE
Sbjct: 1   SDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGE 60

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + +++E+   FGVR+ EI++ +
Sbjct: 61  VVVIDEN---FGVRITEIVSPK 79


>gi|299068764|emb|CBJ40004.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum CMR15]
          Length = 158

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           N + ++ +P+            ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 51  NALSSVFKPLLPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 110

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+ 
Sbjct: 111 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 148


>gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 377

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +  +N +LI+++P+++ + LG     +  ++  S G +I LDK  GE VDI +N + IAK
Sbjct: 294 RYPENIELILDVPLEITVELGRTQKLVREILEFSTGSIIELDKLAGEPVDILVNGKVIAK 353

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ +++E    FGVR+ +I+N
Sbjct: 354 GEVVVIDE---SFGVRITDIVN 372


>gi|146342732|ref|YP_001207780.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
 gi|146195538|emb|CAL79565.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
          Length = 115

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 60/100 (60%), Gaps = 7/100 (7%)

Query: 51  SEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           + PI+ D+    E+       + + + ++PV++  +LG   M +  L+ L  G V+ LD+
Sbjct: 16  APPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDR 75

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +VGE++DI +NN+ +A+GE+ ++E+     GV + EI+ +
Sbjct: 76  KVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKS 112


>gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sibiricum 255-15]
 gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sibiricum 255-15]
          Length = 376

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    N  ++ ++P+ + + LG     + +++ L++G +I LDK  GE VD+ +NN  IA
Sbjct: 289 EGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLIA 348

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
            GE+ ++EE+   FGVR+ EI+N +
Sbjct: 349 TGEVVVIEEN---FGVRITEIVNTK 370


>gi|27382113|ref|NP_773642.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
 gi|27355283|dbj|BAC52267.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
          Length = 116

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + ++PV++  +LG   M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ 
Sbjct: 38  DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRRVGEAIDIYVNNKLVARGEVV 97

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E+     GV + EI+  +
Sbjct: 98  LVED---KLGVTMTEIIKTE 114


>gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 366

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           + N DLI+++P+ + + LG     I +++ L++G +I LDK  GE VDI  N + IAKGE
Sbjct: 281 SKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGE 340

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + +++E   +FGVR+ +I++
Sbjct: 341 VVVIDE---NFGVRITDIVH 357


>gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
 gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
 gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 97

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           ST   D+++++P+++ + LG   M I +L+ L+ G VI LDK  GE +DI +N + +A+G
Sbjct: 11  STRRLDMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDILVNGRLVARG 70

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E  ++ +    FGVR+ +I++ Q
Sbjct: 71  EAVVVND---KFGVRITDIVSPQ 90


>gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation
           [Thermoanaerobacter tengcongensis MB4]
          Length = 366

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           + N DLI+++P+ + + LG     I +++ L++G +I LDK  GE VDI  N + IAKGE
Sbjct: 281 SKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGE 340

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + +++E   +FGVR+ +I++
Sbjct: 341 VVVIDE---NFGVRITDIVH 357


>gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320]
 gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
 gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320]
 gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
          Length = 136

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + +LIM+IPVK+ + LG   M I  L++LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 52  DINLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 111

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    +G+R+ +I+
Sbjct: 112 VVSD---KYGIRITDII 125


>gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella
           australiensis 50-1 BON]
 gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella
           australiensis 50-1 BON]
          Length = 366

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 71/108 (65%), Gaps = 7/108 (6%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           SE +++   V  + + +++++  +L+ S  N +LIM+IP+++ + LG     + +++ L 
Sbjct: 258 SEKVVKAQPV--VFQQLNNEAPEVLQGS--NMNLIMDIPLQVTVELGRTKKTVKDILELG 313

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            G VI LD+  GE +DI +N + +A+GE+ +++E   +FGVR+IE+++
Sbjct: 314 TGSVIELDRLAGEPIDILVNGKLVARGEVIVIDE---NFGVRIIEMID 358


>gi|229544405|ref|ZP_04433463.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           coagulans 36D1]
 gi|229324890|gb|EEN90567.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           coagulans 36D1]
          Length = 368

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N D++++IP+++ + LG     +  ++ +  G ++ LDK  GE VDI IN+Q IA GE
Sbjct: 283 TKNLDMLLDIPLEVTVELGRTSKTVREILEMGAGSIVELDKLAGEPVDILINHQLIAIGE 342

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + +++E+   FGVRV +I++
Sbjct: 343 VVVIDEN---FGVRVTDIVS 359


>gi|330814982|ref|YP_004358687.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
 gi|327367375|gb|AEA58731.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
          Length = 149

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 8/123 (6%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQI 81
           D  + D   +    N + +        + +P+S  ++N    ST N  D+I++IPVKM +
Sbjct: 23  DEAMDDWAAALAEQNDQPIASGATGAGVFQPLSKAASN----STHNDIDMILDIPVKMTV 78

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ 
Sbjct: 79  ELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLT 135

Query: 142 EIL 144
           +I+
Sbjct: 136 DII 138


>gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
 gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
          Length = 136

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + +LIM+IPVK+ + LG   M I  L++LS+G V++LD   GE +DI IN   IA+GE+ 
Sbjct: 52  DINLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 111

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    +G+R+ +I+
Sbjct: 112 VVSD---KYGIRITDII 125


>gi|255022052|ref|ZP_05294058.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
 gi|254968538|gb|EET26094.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
          Length = 120

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 4/95 (4%)

Query: 55  SSDSNN--ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           SSD  N  +L   + + DL++N+P+++ + LG   M   N++ LS+G VI L++ VGE +
Sbjct: 19  SSDETNEKLLTPGSPSVDLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPL 78

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I IN +  A GE  ++ ++   FGVR+  ++N +
Sbjct: 79  TIYINGEIFAYGEAVLVNQE--RFGVRLTALVNKE 111


>gi|33592494|ref|NP_880138.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
 gi|33572140|emb|CAE41683.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
 gi|332381912|gb|AEE66759.1| flagellar motor switch protein FliN [Bordetella pertussis CS]
          Length = 166

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM++PV+M + LG   + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ 
Sbjct: 80  DIDLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 139

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++   D  +G+R+ +I+
Sbjct: 140 VV---DDKYGIRLTDII 153


>gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 83

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++
Sbjct: 1   DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 60

Query: 130 EEDDTHFGVRVIEILN 145
            +    +GVR+ +I+ 
Sbjct: 61  AD---KYGVRITDIIT 73


>gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
 gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
          Length = 137

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++   +N S             +  +  + DLIM+IPVK
Sbjct: 4   LNNPADDNNGAMDDLWAEALSEQKSTNNKSAAEAMFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ L+   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEIL 144
           R+ +I+
Sbjct: 121 RITDII 126


>gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
 gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
          Length = 179

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM++PV++ + LG   + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ 
Sbjct: 93  DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 152

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++E+    +G+R+ +I+
Sbjct: 153 VVED---KYGIRLTDII 166


>gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121]
 gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121]
          Length = 150

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             DLIM+IPV + + LGS  + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ 
Sbjct: 67  GMDLIMDIPVTLSMELGSTSIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVV 126

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +G+R+ ++++
Sbjct: 127 VVND---KYGIRLTDVVS 141


>gi|329849953|ref|ZP_08264799.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
           C19]
 gi|328841864|gb|EGF91434.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
           C19]
          Length = 108

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++PV +  +LG   M +S L+ L  G V+ LD++VGE++DI +NN+ +A+GE+ ++  
Sbjct: 32  VFDVPVNISAVLGKSYMSVSQLLKLGAGSVLELDRKVGEAIDIYVNNRLVARGEVVVV-- 89

Query: 132 DDTHFGVRVIEILNAQ 147
            D   GV + EI+ ++
Sbjct: 90  -DDRLGVTMTEIIKSE 104


>gi|33601557|ref|NP_889117.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
 gi|33575993|emb|CAE33073.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
          Length = 172

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM++PV+M + LG   + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ 
Sbjct: 86  DIDLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 145

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++   D  +G+R+ +I+
Sbjct: 146 VV---DDKYGIRLTDII 159


>gi|255021380|ref|ZP_05293428.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
 gi|254969243|gb|EET26757.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
          Length = 150

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 64/106 (60%), Gaps = 14/106 (13%)

Query: 51  SEPISSDSNNILEKSTD-----------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           +EP+++     LE+++            N D+I++IPV + + LG   +QI NL+ L++G
Sbjct: 39  AEPVAAAPMPDLEETSPAGGAPAGGAHANLDMILDIPVNLSVELGRTKIQIRNLLQLAQG 98

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            V+ L++  GE +D+ +N   IA+GE+ ++ +    FG+R+ +I++
Sbjct: 99  SVVELERLAGEPMDVLVNGYLIAQGEVVLVND---KFGIRLTDIIS 141


>gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046]
 gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046]
          Length = 137

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   I++GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 113 VVAD---KYGVRITDIIT 127


>gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium papyrosolvens DSM 2782]
 gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium papyrosolvens DSM 2782]
          Length = 400

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++P+++ + LG     I +++    G VI LDK  GE VDI +N + IAKGE+ 
Sbjct: 321 NISLIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKGEVV 380

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E    FGVR+ +I++
Sbjct: 381 VIDE---SFGVRITDIIH 395


>gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10]
 gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulolyticum H10]
          Length = 402

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D  ++ EK   N  LIM++P+++ + LG     I +++    G VI LDK  GE VDI +
Sbjct: 314 DGLSVTEKK--NISLIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILV 371

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N + IAKGE+ +++E    FGVR+ +I++
Sbjct: 372 NGKAIAKGEVVVIDE---SFGVRITDIIH 397


>gi|167644980|ref|YP_001682643.1| flagellar motor switch protein [Caulobacter sp. K31]
 gi|167347410|gb|ABZ70145.1| flagellar motor switch protein FliN [Caulobacter sp. K31]
          Length = 111

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 50/73 (68%), Gaps = 3/73 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++PV +  +LG   M ++ L+ LS G ++ LD++VGE++DI +NN+ +A+GE+ +++E
Sbjct: 35  VFDVPVNISAVLGRAHMSVAQLLQLSAGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94

Query: 132 DDTHFGVRVIEIL 144
                GV + EI+
Sbjct: 95  ---RLGVTMTEII 104


>gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Halanaerobium praevalens DSM 2228]
          Length = 417

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +LI ++P+++ + LG   M+I ++++L  G +I LDK  GE VD+ +N + +AKGE+ 
Sbjct: 335 NMELIKDVPLEVTVRLGKTVMKIRDILDLGDGSIIELDKLAGEPVDLLVNGKLVAKGEVV 394

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FG RV +I++
Sbjct: 395 VIDE---NFGFRVKDIIS 409


>gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 154

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + +LIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 70  DINLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 129

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 130 VVAD---KYGVRITDIIT 144


>gi|85859178|ref|YP_461380.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
 gi|85722269|gb|ABC77212.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
          Length = 163

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I++IP+ + + LG C M IS L+ L +G +I L K  GE +D+ +N + IA+GE+ 
Sbjct: 80  DLDFILDIPLTLSVELGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVV 139

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ E    FG+R+ +I++ 
Sbjct: 140 VVNE---KFGIRLTDIVSP 155


>gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 354

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N +L+M++ + + + LG   M I +++ L +G +I LDK  GE VD+ +N + IAKGE
Sbjct: 268 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 327

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + +++E   +FGVRV +I++
Sbjct: 328 VVVIDE---NFGVRVTDIVS 344


>gi|83955111|ref|ZP_00963767.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
 gi|83840440|gb|EAP79613.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
          Length = 114

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 2/78 (2%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I  + + ++++LG   M IS L+NL+KG VI LD+RVGE VDI IN++ +A+G++ 
Sbjct: 33  SLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLV 92

Query: 128 IMEEDDTHFGVRVIEILN 145
            ++ D    GV + EI+ 
Sbjct: 93  RVQGD--SLGVALREIVK 108


>gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum
           BKT015925]
 gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum
           BKT015925]
          Length = 417

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           +  N DLI+++P+++ ++LG     I +++ L  G +I LDK   E V+I +N +KIA G
Sbjct: 330 APQNIDLILDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYG 389

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ +++E   +FGVR++ I++ +
Sbjct: 390 EVVVVDE---NFGVRIVNIVSGE 409


>gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 226

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 65/105 (61%), Gaps = 5/105 (4%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
            ++ ++D + EP +    N+ ++   N D+IM+IPV + + +G   + I +L+ L++G V
Sbjct: 119 AERAELDEL-EPDAGAGRNLGDEEA-NLDVIMDIPVTLSMEIGRTQISIRHLLQLNQGSV 176

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++A
Sbjct: 177 VELDRLAGEPLDVMVNGTLIAHGEVVVVNE---RFGIRLTDVISA 218


>gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032]
 gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032]
          Length = 154

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + +LIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 70  DINLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 129

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 130 VVAD---KYGVRITDIIT 144


>gi|83944188|ref|ZP_00956644.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
           EE-36]
 gi|83845055|gb|EAP82936.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
           EE-36]
          Length = 114

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 2/77 (2%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I  + + ++++LG   M IS L+NL+KG VI LD+RVGE VDI IN++ +A+G++ 
Sbjct: 33  SLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLV 92

Query: 128 IMEEDDTHFGVRVIEIL 144
            ++ D    GV + EI+
Sbjct: 93  RVQGD--SLGVALREIV 107


>gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Ethanoligenens harbinense YUAN-3]
 gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Ethanoligenens harbinense YUAN-3]
          Length = 374

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +NF+LI  +P+ + + +G     +  +++ + G +I LDK+ G+ VDI +N Q IA+GE+
Sbjct: 294 NNFELIQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPVDIIVNGQLIAQGEV 353

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E+   FGVR+ EI+  Q
Sbjct: 354 VVIDEN---FGVRITEIIGKQ 371


>gi|16125160|ref|NP_419724.1| flagellar motor switch protein [Caulobacter crescentus CB15]
 gi|221233890|ref|YP_002516326.1| flagellar motor switch protein [Caulobacter crescentus NA1000]
 gi|462113|sp|Q03593|FLIN_CAUCR RecName: Full=Flagellar motor switch protein FliN
 gi|144250|gb|AAA66328.1| flagellar switch protein [Caulobacter crescentus CB15]
 gi|13422174|gb|AAK22892.1| flagellar motor switch protein FliN [Caulobacter crescentus CB15]
 gi|220963062|gb|ACL94418.1| flagellar motor switch protein FliN [Caulobacter crescentus NA1000]
          Length = 110

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +K+  +   + ++PV +  +LG   M ++ L+ L +G ++ LD++VGE++DI +NN+ +A
Sbjct: 26  DKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVA 85

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
           +GE+ +++E     GV + EI+
Sbjct: 86  RGEVVVVDE---RLGVTMTEII 104


>gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulovorans 743B]
 gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B]
 gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulovorans 743B]
          Length = 400

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLIM++P+ + ++LG     I ++++L+ G +I LDK   E V+I +N +KIA GE+
Sbjct: 315 NNIDLIMDVPLNISVVLGKTRKSIKDILSLNNGSLIELDKLAEEPVEILVNGKKIAYGEV 374

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   +FGVR+  I++++
Sbjct: 375 VVVDE---NFGVRITSIVSSE 392


>gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
           2876]
 gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
           2876]
          Length = 426

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLIM++P+++ + LG     I  ++  + G ++ L+K  GE +D+ +N + +AKGE+
Sbjct: 351 ENIDLIMDVPLEVTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEV 410

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++EE    FGV++ EI+
Sbjct: 411 VVIEES---FGVKITEIV 425


>gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
           str. 1873]
 gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
           str. 1873]
          Length = 394

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+++ ++LG     I +++ L  G +I LDK   E V+I +N +KIA GE+ 
Sbjct: 310 NIDLILDVPLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVV 369

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR++ I++ +
Sbjct: 370 VVDE---NFGVRIVNIVSGE 386


>gi|295696125|ref|YP_003589363.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           tusciae DSM 2912]
 gi|295411727|gb|ADG06219.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           tusciae DSM 2912]
          Length = 395

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 54/82 (65%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           TDN DL++++ + + + LG     +  +++ S G V+ LD+  GE VDI +N + IAKGE
Sbjct: 307 TDNLDLLLDVSLTVSVELGRTHQSVREVLSWSLGSVVELDRLAGEPVDIYVNQKLIAKGE 366

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + +++E+   FGVRV +I++ +
Sbjct: 367 VVVIDEN---FGVRVTDIVHPR 385


>gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName:
           Full=Flagellar motor switch protein MopA
          Length = 106

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 22  DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 81

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +GVR+ +I+ 
Sbjct: 82  VVSD---KYGVRITDIIT 96


>gi|187918151|ref|YP_001883714.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
 gi|119860999|gb|AAX16794.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
          Length = 114

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 54/77 (70%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  L+M++ +++ + LG    +I +++ +S+G +ITLDK  GE VDI +N + +AKGE+ 
Sbjct: 36  NLGLLMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVVAKGEVV 95

Query: 128 IMEEDDTHFGVRVIEIL 144
           +++E   +FGVR+ EI+
Sbjct: 96  VIDE---NFGVRITEII 109


>gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17]
 gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17]
          Length = 172

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 4/94 (4%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E  SSDS N  + S D  D+IM+IPV + + +G+  + I NL+ L++G VI LD+  GE 
Sbjct: 73  EEFSSDSVNTSKGSPD-LDVIMDIPVTISMEVGNTMIPIRNLLQLNQGSVIELDRLAGEP 131

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 132 LDVLVNGTLIAHGEVVMVND---KFGIRLTDVMS 162


>gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 353

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N +L+M++ + + + LG   M I +++ L +G +I LDK  GE VD+ +N + IAKGE
Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + +++E   +FGVRV +I++
Sbjct: 327 VVVIDE---NFGVRVTDIVS 343


>gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 353

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N +L+M++ + + + LG   M I +++ L +G +I LDK  GE VD+ +N + IAKGE
Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + +++E   +FGVRV +I++
Sbjct: 327 VVVIDE---NFGVRVTDIVS 343


>gi|144233|gb|AAA23038.1| putative [Caulobacter crescentus CB15]
          Length = 101

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +K+  +   + ++PV +  +LG   M ++ L+ L +G ++ LD++VGE++DI +NN+ +A
Sbjct: 17  DKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVA 76

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
           +GE+ +++E     GV + EI+
Sbjct: 77  RGEVVVVDE---RLGVTMTEII 95


>gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Tepidanaerobacter sp. Re1]
 gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Tepidanaerobacter sp. Re1]
          Length = 376

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 11/95 (11%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           EP ++ S+++        +LI+++P+++ + LG     I  ++ +S G +I LDK  GE 
Sbjct: 285 EPTAAQSSSL--------NLILDVPLEVTVELGRTEKTIKEILEISSGTIIELDKMAGEP 336

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            DI +N + +AKGE+ +++E   +FGVR+ EI+N+
Sbjct: 337 ADILVNGKLVAKGEVVVIDE---NFGVRITEIINS 368


>gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 398

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DLIM++P+ + + LG     I  ++ L++G +I LDK  GE VD+ +N + IAKG
Sbjct: 312 SPQNLDLIMDVPLDVSVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKG 371

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ +++E   ++G+R+  I++
Sbjct: 372 EVVVIDE---NYGIRITTIIS 389


>gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
           B316]
 gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
           B316]
          Length = 412

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N  +I ++P+++ + LG     I+++++ + G +I LDK  GE VD+ +N + +AKGE+
Sbjct: 337 ENIGIIKDVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEV 396

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++EE    FGVRV EI+
Sbjct: 397 VVIEE---SFGVRVTEIV 411


>gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
           12260]
 gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
           12260]
          Length = 374

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI++IPV++ + LG     I  ++ +  G V+ L++  GE VD+ +N + +A+GE+ 
Sbjct: 290 NIDLIVDIPVRITVELGRARKTIGEVLGMGPGSVVELNRMAGEPVDVLVNGKLMARGEVV 349

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E    FG+RV EI++
Sbjct: 350 VIDE---SFGIRVTEIVS 364


>gi|114569234|ref|YP_755914.1| flagellar motor switch protein [Maricaulis maris MCS10]
 gi|114339696|gb|ABI64976.1| flagellar motor switch protein FliN [Maricaulis maris MCS10]
          Length = 118

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 54/82 (65%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           EKS  +   + ++PV +  +LG   + +++L+ L+ G V+ LD+++GE++DI +NN+ +A
Sbjct: 34  EKSAADLAPVFDVPVNISAVLGKAHIDVNSLLKLTSGSVVELDRKIGEAIDIYVNNRLVA 93

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
           +GE+ ++   D   GV + EI+
Sbjct: 94  RGEVVVV---DDRLGVTMTEII 112


>gi|119899014|ref|YP_934227.1| flagellar motor switch FliN [Azoarcus sp. BH72]
 gi|119671427|emb|CAL95340.1| flagellar motor switch FliN [Azoarcus sp. BH72]
          Length = 159

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +FD+I++IPV++ + LG   + I NL+ L+ G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 75  DFDMILDIPVQLTVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQGEVV 134

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    FG+R+ +I+
Sbjct: 135 VVND---KFGIRLTDII 148


>gi|82702482|ref|YP_412048.1| surface presentation of antigens (SPOA) protein [Nitrosospira
           multiformis ATCC 25196]
 gi|82410547|gb|ABB74656.1| Surface presentation of antigens (SPOA) protein [Nitrosospira
           multiformis ATCC 25196]
          Length = 151

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++ DL+M+IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+
Sbjct: 66  NDIDLVMDIPVQLTVQLGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEV 125

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++ E    FG+R+ +I+
Sbjct: 126 VVVNE---KFGIRLTDII 140


>gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 401

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+++ ++LG     I +++NL  G +I LDK   E V+I +N +K+A GE+ 
Sbjct: 317 NIDLILDVPLEISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVV 376

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+  I++
Sbjct: 377 VIDE---NFGVRITGIVS 391


>gi|288962690|ref|YP_003452984.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
 gi|288914956|dbj|BAI76440.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
          Length = 112

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 62/102 (60%), Gaps = 3/102 (2%)

Query: 47  VDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +D+ S+      + I +K  D   + I N+PV +Q++LG   M ++ L+ L +G V+ L+
Sbjct: 9   LDDDSKQAEKAPDRIGDKPYDGPMNAIYNVPVDVQVVLGRTSMLVAQLLKLGRGAVLELE 68

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++V E V++ +N++ +A+GE+ I+E  D   GV + EI+  +
Sbjct: 69  RKVDEPVEVLVNHRLVARGEVVIVE--DQRLGVTLTEIVRTE 108


>gi|160880834|ref|YP_001559802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium phytofermentans ISDg]
 gi|160429500|gb|ABX43063.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium phytofermentans ISDg]
          Length = 401

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 60/93 (64%), Gaps = 5/93 (5%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +P  +  + +L+  T+N DL++++P+++ + LG     I  +++ + G ++ L++  GE 
Sbjct: 313 QPFVNTGSPLLQ--TENIDLLLDVPLEVTVELGRTSKSIREILDFAPGTIVELNRLAGEP 370

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +D+ +N + +AKGE+ ++EE    FG+RV +I+
Sbjct: 371 IDVLVNGKYVAKGEVVVIEE---AFGIRVTDII 400


>gi|220934502|ref|YP_002513401.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995812|gb|ACL72414.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
          Length = 154

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 7/104 (6%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           +QK   D+++    S+S     +   N D++++IPV + + +G   M I NL+ L++G V
Sbjct: 49  VQKASFDSLA----SESRAPATQEDVNLDVVLDIPVTISMEIGRTRMPIRNLLQLNQGSV 104

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++
Sbjct: 105 VELDRLAGEPLDVYVNGTLIAHGEVVVVNE---KFGIRLTDVIS 145


>gi|114765261|ref|ZP_01444393.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542396|gb|EAU45424.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Roseovarius sp. HTCC2601]
          Length = 114

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             ++ D ++N+ + +QI+LG   M I+ L+ LS+G +I LDK +G+ V++ IN++ +A+G
Sbjct: 30  GANSIDAMLNVGLNVQIVLGQTRMPIAQLLKLSRGSIIELDKSIGQPVEVVINDRLVARG 89

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           ++  +E+D    GV +IEI+
Sbjct: 90  DLVKLEDD--RLGVSLIEIV 107


>gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016]
 gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 396

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+++ ++LG     I +++NL  G ++ LDK   E V+I +N +K+A GE+ 
Sbjct: 313 NIDLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVI 372

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+  I++++
Sbjct: 373 VIDE---NFGVRIKSIISSE 389


>gi|187926921|ref|YP_001893266.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
 gi|241665250|ref|YP_002983609.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
 gi|187728675|gb|ACD29839.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
 gi|240867277|gb|ACS64937.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
          Length = 150

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 61/96 (63%), Gaps = 5/96 (5%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +P+++D     ++  ++ D+I++IPV++ + LG   + I NL+ L++G V+ LD   G
Sbjct: 50  VFKPLTADGLGGAQR--NDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAG 107

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           E +D+ +N   IA+GE+ ++ E    FG+R+ +I+ 
Sbjct: 108 EPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 140


>gi|300113611|ref|YP_003760186.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
 gi|299539548|gb|ADJ27865.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
          Length = 153

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 67/111 (60%), Gaps = 11/111 (9%)

Query: 42  IQKNDVDNISEP------ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           ++K +V ++S P      + +D  N+ +    N +LI++IPV M + +G   + I NL+ 
Sbjct: 40  VKKEEVASMSGPQAVLEELEADPGNVTKDI--NLELILDIPVTMAMEIGRTRISIRNLLQ 97

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           L++G V+ LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++A
Sbjct: 98  LNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVVNE---KFGIRLTDVISA 145


>gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555]
 gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555]
          Length = 392

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+++ ++LG     I +++NL  G ++ LDK   E V+I +N +K+A GE+ 
Sbjct: 309 NIDLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVI 368

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+  I++++
Sbjct: 369 VIDE---NFGVRIKSIISSE 385


>gi|293605020|ref|ZP_06687415.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
           ATCC 43553]
 gi|292816589|gb|EFF75675.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
           ATCC 43553]
          Length = 101

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + DLIM++PV++ + LG   + I NL+ L +G V+ LD   GE +DI +N   IA+G
Sbjct: 12  SGTDIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQG 71

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+    +G+R+ +I+ 
Sbjct: 72  EVVVVED---KYGIRLTDIIT 89


>gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
           16841]
 gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
           16841]
          Length = 379

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
              +N  LIM++P+++ + LG     I  +++ + G +I L++  GE +DI +N + +AK
Sbjct: 301 AGAENIGLIMDVPLEVTVELGRTTKSIHEILDFAPGTIIELNRIAGEPIDILVNGKYVAK 360

Query: 124 GEITIMEEDDTHFGVRVIEIL 144
           GE+ ++EE    FGVR+ EI+
Sbjct: 361 GEVVVIEE---SFGVRITEIV 378


>gi|254194758|ref|ZP_04901189.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
 gi|169651508|gb|EDS84201.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
          Length = 165

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 65  STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ST N  DLI++IPVKM + LG   + I NL+ L++G V+ LD   GE +D+ IN   IA+
Sbjct: 77  STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLINGCLIAQ 136

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ ++ +    FG+R+ +I+ 
Sbjct: 137 GEVVVVND---KFGIRLTDIIT 155


>gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
           str. Eklund]
 gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
           str. Eklund]
          Length = 388

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           +  N DLI+++P+++ ++LG     I  ++ L  G +I LDK   E V+I +N +KIA G
Sbjct: 301 APQNIDLILDVPLEISVVLGKTKKSIKEVLELGTGSLIELDKLAEEPVEIYVNGKKIAYG 360

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ +++E   +FGVR++ I++ +
Sbjct: 361 EVVVVDE---NFGVRIMNIVSGE 380


>gi|309779461|ref|ZP_07674222.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
 gi|308921702|gb|EFP67338.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
          Length = 151

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 61/96 (63%), Gaps = 5/96 (5%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +P+++D     ++  ++ D+I++IPV++ + LG   + I NL+ L++G V+ LD   G
Sbjct: 51  VFKPLTADGLGGAQR--NDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAG 108

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           E +D+ +N   IA+GE+ ++ E    FG+R+ +I+ 
Sbjct: 109 EPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 141


>gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 356

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+M++ + + + LG   M I +++ L +G +I LDK  GE VD+ +N + IAKGE+ 
Sbjct: 273 NLNLLMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVV 332

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV +I++
Sbjct: 333 VIDE---NFGVRVTDIVS 347


>gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens
           16/4]
          Length = 394

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + +N DLI+++P+ + + LG     I ++++ + G +I L+K  GE +D+ +N + +AKG
Sbjct: 316 AQENIDLILDVPLDVTVELGRTNKTIQDILDFAPGTIIELNKIAGEPIDVLVNGKYVAKG 375

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+ ++EE    FGVR+ EI+
Sbjct: 376 EVVVIEE---SFGVRITEII 392


>gi|91776322|ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT]
 gi|91710309|gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT]
          Length = 142

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 7/101 (6%)

Query: 48  DNISE--PISSD--SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           DN +E  P+ ++  S N L ++ ++ D I++IPV++ + LG   + I NL+ L++G V+ 
Sbjct: 34  DNKAEQAPVFTEFSSKNKLHETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVE 93

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 94  LDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 131


>gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium carboxidivorans P7]
 gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
           P7]
 gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium carboxidivorans P7]
 gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
           P7]
          Length = 406

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+ + ++LG     I +++NL  G +I LDK   E V+I +N +++A GE+ 
Sbjct: 323 NIDLILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAYGEVV 382

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+  I++++
Sbjct: 383 VVDE---NFGVRITSIISSE 399


>gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 103

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T +  L+ +IPVKM + +GS  + ++ L++L++G V+ LD++  E +D+ +N + IAKGE
Sbjct: 18  TKDLGLLSDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANELLDVVVNGKLIAKGE 77

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           +  +   +  FGVR++++++
Sbjct: 78  VVTV---NGRFGVRIVDVVS 94


>gi|148253397|ref|YP_001237982.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
 gi|146405570|gb|ABQ34076.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
          Length = 115

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + ++PV++  +LG   M +  L+ L  G V+ LD++VGE++DI +NN+ +A+GE+ 
Sbjct: 37  DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVV 96

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++E+     GV + EI+ +
Sbjct: 97  LVED---KLGVTMTEIIKS 112


>gi|30248479|ref|NP_840549.1| flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718]
 gi|30138365|emb|CAD84374.1| possible flagellar motor switch FliN [Nitrosomonas europaea ATCC
           19718]
          Length = 157

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 57/86 (66%), Gaps = 3/86 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           N++L  + ++ D+I++IPV++ + LG   + I NL+ L++G V+ L+   GE +D+ +N 
Sbjct: 64  NDVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVVELNGMAGEPMDVLVNG 123

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEIL 144
             IA+GE+ ++ E    FG+R+ +I+
Sbjct: 124 CLIAQGEVVVVNE---KFGIRLTDII 146


>gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297]
 gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297]
          Length = 165

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N + IA GE+ 
Sbjct: 82  NLDVILDIPVTISMEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVV 141

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++ E    FG+R+ ++++ Q
Sbjct: 142 MVNE---KFGIRLTDVVSQQ 158


>gi|212634375|ref|YP_002310900.1| flagellar motor switch protein [Shewanella piezotolerans WP3]
 gi|212555859|gb|ACJ28313.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
          Length = 126

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            SSD+  + E+     D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE +D
Sbjct: 29  FSSDAAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLD 88

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 89  VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117


>gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
 gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
          Length = 354

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 63/98 (64%), Gaps = 7/98 (7%)

Query: 54  ISSDSNNILEKST----DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           +++D+ + + +++     N  LIM++P+ + + +G    ++ +++N + G V+ LDK+  
Sbjct: 253 VTADTGHAVYQASPSINGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQAD 312

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
             VDI +N Q IA+GE+ ++   D +FGVR+ EI+NA+
Sbjct: 313 APVDIIVNGQLIARGEVVVI---DDNFGVRISEIVNAR 347


>gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
           UT26S]
 gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
           UT26S]
          Length = 112

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
            F L+ +IPV+M + +GS  ++++ +++LS+G V+ LD++  + +DI +N   IAKGE+ 
Sbjct: 26  QFRLLADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEVV 85

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
            +   +  +G+R++EI  A+
Sbjct: 86  TV---NGRYGIRIVEIAAAE 102


>gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium
           sticklandii DSM 519]
 gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium
           sticklandii]
          Length = 383

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 55/81 (67%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI ++ +K+ + LG     I +++  + G ++ LD+ VGE +DI +N +K+AKGE+
Sbjct: 300 ENIDLIKDVLLKVTVELGRTTKPIDDILQFTPGSILELDRLVGEPLDIMVNGKKVAKGEV 359

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   ++G+R+ +I+ A+
Sbjct: 360 VVIDE---NYGIRITDIIKAE 377


>gi|167834867|ref|ZP_02461750.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           MSMB43]
          Length = 130

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           S  +   + ++ DLI++IPVKM + LG   + I NL+ L++G V+ LD   GE +D+ +N
Sbjct: 36  SKAVASSTHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVN 95

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
              IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 96  GCLIAQGEVVVVND---KFGIRLTDIIT 120


>gi|167585019|ref|ZP_02377407.1| flagellar motor switch protein FliN [Burkholderia ubonensis Bu]
          Length = 163

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 8/97 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  ++     ST N  D+I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 63  GVFQPLSKAAST----STHNDIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 118

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 152


>gi|167560938|ref|ZP_02353854.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
           EO147]
 gi|167568198|ref|ZP_02361072.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
           C6786]
          Length = 162

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 4/81 (4%)

Query: 65  STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ST N  DLI++IPVKM + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+
Sbjct: 74  STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 133

Query: 124 GEITIMEEDDTHFGVRVIEIL 144
           GE+ ++ +    FG+R+ +I+
Sbjct: 134 GEVVVVND---KFGIRLTDII 151


>gi|53717667|ref|YP_106653.1| flagellar motor switch protein [Burkholderia pseudomallei K96243]
 gi|126440526|ref|YP_001057085.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
 gi|126454703|ref|YP_001064315.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106a]
 gi|134281531|ref|ZP_01768239.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
 gi|167892139|ref|ZP_02479541.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           7894]
 gi|217423854|ref|ZP_03455354.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
 gi|237814423|ref|YP_002898874.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           MSHR346]
 gi|242314847|ref|ZP_04813863.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106b]
 gi|254174650|ref|ZP_04881311.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           10399]
 gi|254184093|ref|ZP_04890684.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1655]
 gi|254186559|ref|ZP_04893076.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254201358|ref|ZP_04907722.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
 gi|254206700|ref|ZP_04913051.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
 gi|254260996|ref|ZP_04952050.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710a]
 gi|254298639|ref|ZP_04966090.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           406e]
 gi|254357363|ref|ZP_04973637.1| flagellar motor switch protein FliN [Burkholderia mallei
           2002721280]
 gi|52208081|emb|CAH34011.1| probable flagellar motor switch protein [Burkholderia pseudomallei
           K96243]
 gi|126220019|gb|ABN83525.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
 gi|126228345|gb|ABN91885.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106a]
 gi|134247198|gb|EBA47284.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
 gi|147747252|gb|EDK54328.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
 gi|147752242|gb|EDK59308.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
 gi|148026427|gb|EDK84512.1| flagellar motor switch protein FliN [Burkholderia mallei
           2002721280]
 gi|157808697|gb|EDO85867.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           406e]
 gi|157934244|gb|EDO89914.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160695695|gb|EDP85665.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           10399]
 gi|184214625|gb|EDU11668.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1655]
 gi|217392917|gb|EEC32939.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
 gi|237504588|gb|ACQ96906.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           MSHR346]
 gi|242138086|gb|EES24488.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106b]
 gi|254219685|gb|EET09069.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710a]
          Length = 165

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 65  STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ST N  DLI++IPVKM + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+
Sbjct: 77  STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 136

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ ++ +    FG+R+ +I+ 
Sbjct: 137 GEVVVVND---KFGIRLTDIIT 155


>gi|237653570|ref|YP_002889884.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
 gi|237624817|gb|ACR01507.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
          Length = 155

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++FD+I++IPV++ + LG   + I NL+ L+ G V+ LD   GE +D+ +N   IA+G
Sbjct: 68  ALNDFDMILDIPVQITVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQG 127

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+ ++ +    FG+R+ +I+
Sbjct: 128 EVVVVND---KFGIRLTDII 144


>gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative
           Flagelar Motor Switch Protein Flin (Tm0680) From
           Thermotoga Maritima At 1.85 A Resolution
 gi|39654325|pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative
           Flagelar Motor Switch Protein Flin (Tm0680) From
           Thermotoga Maritima At 1.85 A Resolution
          Length = 96

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E  +D  +L+++IP+K+ + LG     +  ++    G +I LDK  GE VDI +N + IA
Sbjct: 7   EVPSDKLELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIA 66

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ +++E+   FGVR+ EI++ +
Sbjct: 67  RGEVVVIDEN---FGVRITEIVSPK 88


>gi|67641903|ref|ZP_00440668.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
           4]
 gi|121599067|ref|YP_994774.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
 gi|124384349|ref|YP_001027841.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10229]
 gi|126449143|ref|YP_001082211.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10247]
 gi|167000455|ref|ZP_02266269.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
 gi|167717396|ref|ZP_02400632.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           DM98]
 gi|167736439|ref|ZP_02409213.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 14]
 gi|167813513|ref|ZP_02445193.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 91]
 gi|167822055|ref|ZP_02453526.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 9]
 gi|167843668|ref|ZP_02469176.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           B7210]
 gi|167900651|ref|ZP_02487856.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
           13177]
 gi|167908871|ref|ZP_02495962.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 112]
 gi|167916910|ref|ZP_02504001.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           BCC215]
 gi|226193338|ref|ZP_03788948.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pakistan 9]
 gi|121227877|gb|ABM50395.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
 gi|124292369|gb|ABN01638.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10229]
 gi|126242013|gb|ABO05106.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10247]
 gi|225934938|gb|EEH30915.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522916|gb|EEP86358.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
           4]
 gi|243063643|gb|EES45829.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
          Length = 162

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 65  STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ST N  DLI++IPVKM + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+
Sbjct: 74  STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 133

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ ++ +    FG+R+ +I+ 
Sbjct: 134 GEVVVVND---KFGIRLTDIIT 152


>gi|254491664|ref|ZP_05104843.1| flagellar motor switch protein FliN [Methylophaga thiooxidans
           DMS010]
 gi|224463142|gb|EEF79412.1| flagellar motor switch protein FliN [Methylophaga thiooxydans
           DMS010]
          Length = 155

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 53/79 (67%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D++M+IPV + + +G   + I NL+ LS+G V+ LD+  GE +D+ +N+  IA GE+ 
Sbjct: 72  DLDMVMDIPVTISMEIGRTRISIRNLLQLSQGSVVELDRLAGEPMDVLVNDTLIAHGEVV 131

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    FG+R+ ++++A
Sbjct: 132 VVND---KFGIRLTDVISA 147


>gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans
           C54]
          Length = 100

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM++PV++ + LG   + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ 
Sbjct: 14  DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 73

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++E+    +G+R+ +I+
Sbjct: 74  VVED---KYGIRLTDII 87


>gi|253996307|ref|YP_003048371.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
 gi|253982986|gb|ACT47844.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
          Length = 157

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           + N L ++ ++ D I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N
Sbjct: 63  AKNKLHETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVN 122

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144
              IA+GE+ ++ +    FG+R+ +I+
Sbjct: 123 GCLIAQGEVVVVND---KFGIRLTDII 146


>gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein
           [uncultured bacterium]
          Length = 117

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 46/68 (67%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +S    + +  +PV++  +LG+  +Q+S ++ L +G V+ LD+ VGE VDI  NN+ IA+
Sbjct: 35  RSDGRMEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIAR 94

Query: 124 GEITIMEE 131
           GE+ ++E+
Sbjct: 95  GEVVVVED 102


>gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6]
          Length = 137

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI  N   IA+GE+ 
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    +GVR+ +I+
Sbjct: 113 VVAD---KYGVRITDII 126


>gi|76810554|ref|YP_331657.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710b]
 gi|76580007|gb|ABA49482.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710b]
          Length = 143

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 65  STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ST N  DLI++IPVKM + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+
Sbjct: 55  STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 114

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ ++ +    FG+R+ +I+ 
Sbjct: 115 GEVVVVND---KFGIRLTDIIT 133


>gi|53723901|ref|YP_104281.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           23344]
 gi|52427324|gb|AAU47917.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           23344]
          Length = 124

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 8/98 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            +  P+S  + +    ST N  DLI++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 24  GVFRPLSKATAS----STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 79

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 80  AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 114


>gi|312962265|ref|ZP_07776757.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
           WH6]
 gi|311283602|gb|EFQ62191.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
           WH6]
          Length = 155

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 11/94 (11%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           EP+S D          N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE 
Sbjct: 64  EPVSLDG--------PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEP 115

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ E    FG+R+ ++++
Sbjct: 116 LDVLVNGTLIAHGEVVVVNE---KFGIRLTDVIS 146


>gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
           TCF52B]
 gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
           TCF52B]
          Length = 365

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 7/140 (5%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----D 67
           ++ +E  +    +P+   N +  +  +   ++KN V        S  +    KST    D
Sbjct: 222 QEKVESSAAGTSSPVSTQNYAEHSATTTKNVEKNPVSVSPVQFQSFESGGTVKSTGEIPD 281

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
               +++IP+ + + LG   + +  ++ LS G +I LDK  GE VDI +N + IA+GE+ 
Sbjct: 282 RIQALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKLIARGEVV 341

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FGVR+ EI+  Q
Sbjct: 342 VIDE---NFGVRITEIVTPQ 358


>gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
           5521]
 gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
           5521]
 gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 412

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLIM++P+ + ++LG     I +++NL  G +I LDK   E V+I +N ++IA GE+ 
Sbjct: 329 NIDLIMDVPLDISVVLGRTKKSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALGEVV 388

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+  I++
Sbjct: 389 VVDE---NFGVRITNIVS 403


>gi|258511385|ref|YP_003184819.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478111|gb|ACV58430.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 381

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +   N  L+ ++P+ + + LG     I  ++ L+ G ++ LDK  GE VDI +N +KIA 
Sbjct: 294 RPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAI 353

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ +++E   +FGVRV +I+ A
Sbjct: 354 GEVVVIDE---NFGVRVTDIVQA 373


>gi|297538202|ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
 gi|297257549|gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
          Length = 157

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           + N L+ + ++ D I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N
Sbjct: 63  AKNKLQDTQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVN 122

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144
              IA+GE+ ++ +    FG+R+ +I+
Sbjct: 123 GCLIAQGEVVVVND---KFGIRLTDII 146


>gi|313672896|ref|YP_004051007.1| flagellar motor switch protein flin [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939652|gb|ADR18844.1| flagellar motor switch protein FliN [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 289

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DL++++ V + I +GS  M + ++V+LS G+++ LD+   E V + +NN+ IAKGE+ 
Sbjct: 204 NIDLLLDVEVPVSIRIGSTKMFLKDIVSLSPGNIVELDEYAEEPVVVMVNNKPIAKGEVV 263

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           I+   D +FGVR+ EI++ +
Sbjct: 264 IV---DGYFGVRIKEIISKE 280


>gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 386

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 57/80 (71%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N + ++NIP+++ + LG+  M + +++ L  G VI L+K  GE++++ IN++ IA+GE+ 
Sbjct: 304 NIENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMINDELIARGEVV 363

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E   +FG+R+ EI++ +
Sbjct: 364 VIDE---NFGIRITEIISPR 380


>gi|218288307|ref|ZP_03492606.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241666|gb|EED08839.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 381

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +   N  L+ ++P+ + + LG     I  ++ L+ G ++ LDK  GE VDI +N +KIA 
Sbjct: 294 RPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAI 353

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ +++E   +FGVRV +I+ A
Sbjct: 354 GEVVVIDE---NFGVRVTDIVQA 373


>gi|77165629|ref|YP_344154.1| surface presentation of antigens (SPOA) protein [Nitrosococcus
           oceani ATCC 19707]
 gi|254434523|ref|ZP_05048031.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
 gi|76883943|gb|ABA58624.1| Surface presentation of antigens (SPOA) protein [Nitrosococcus
           oceani ATCC 19707]
 gi|207090856|gb|EDZ68127.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
          Length = 143

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 59/95 (62%), Gaps = 5/95 (5%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E + +D  N+ +    N +LI++IPV M + +G   + I NL+ L++G V+ LD+  GE 
Sbjct: 46  EELEADPGNVTKDI--NLELILDIPVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEP 103

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +D+ +N   IA GE+ ++ E    FG+R+ ++++A
Sbjct: 104 LDVLVNGCLIAHGELVVVNEK---FGIRLTDVISA 135


>gi|296135699|ref|YP_003642941.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
 gi|295795821|gb|ADG30611.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
          Length = 144

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +  DL+M+IPV + + LG   +QI  L+ L++G V+ LD+  GE +D+ +N   IA+GE+
Sbjct: 60  NQLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEV 119

Query: 127 TIMEEDDTHFGVRVIEILN 145
            ++ +    FG+R+ +I++
Sbjct: 120 VLVND---KFGIRLTDIVS 135


>gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
           Rt17-B1]
          Length = 357

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +   L+ +IP+ + + LG   + +  ++ L  G +I LDK  GE VDI +NN+ IA+GE+
Sbjct: 273 ERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIELDKLTGEPVDIYVNNKLIARGEV 332

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            +++E   +FGVR+ EI++ +
Sbjct: 333 VVIDE---NFGVRITEIVSPK 350


>gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
           L1-82]
 gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
           L1-82]
 gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1]
          Length = 392

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLIM++P+++ + LG     I  +++ + G +I L++  GE +D+ +N + +AKGE+
Sbjct: 317 ENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEV 376

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++EE    +G+R+ EI+
Sbjct: 377 VVIEE---SYGIRITEII 391


>gi|294339870|emb|CAZ88233.1| Flagellar motor switch protein fliN [Thiomonas sp. 3As]
          Length = 144

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             DL+M+IPV + + LG   +QI  L+ L++G V+ LD+  GE +D+ +N   IA+GE+ 
Sbjct: 61  QLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEVV 120

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ +I++
Sbjct: 121 LVND---KFGIRLTDIVS 135


>gi|78485772|ref|YP_391697.1| Type III secretion system outer membrane O protein [Thiomicrospira
           crunogena XCL-2]
 gi|78364058|gb|ABB42023.1| Flagellar motor switch protein FliN [Thiomicrospira crunogena
           XCL-2]
          Length = 153

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 63/105 (60%), Gaps = 9/105 (8%)

Query: 49  NISEPISSDSNNILEKSTDN------FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           N S+ I + S + LEK   +       D++++IPV +Q+ +G   + I NL++ ++G VI
Sbjct: 45  NNSDEIDAASFDALEKGRGDSSEKVDLDVLLDIPVTLQLEIGRAKVSIRNLLSYTQGSVI 104

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +D+  GE +D+ +N   IA GE+ ++ +    FGVR+ ++++ Q
Sbjct: 105 EMDRLAGEPLDLLVNGTLIAHGEVVVIND---KFGVRLTDVVSPQ 146


>gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4]
          Length = 392

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLIM++P+++ + LG     I  +++ + G +I L++  GE +D+ +N + +AKGE+
Sbjct: 317 ENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEV 376

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++EE    +G+R+ EI+
Sbjct: 377 VVIEE---SYGIRITEII 391


>gi|77457774|ref|YP_347279.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
 gi|77381777|gb|ABA73290.1| putative flagellar motor switch protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 152

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143


>gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea
           MMB-1]
 gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea
           MMB-1]
          Length = 150

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPV + + LG   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ 
Sbjct: 67  DLDLIMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVV 126

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +G+R+ ++++
Sbjct: 127 VVND---KYGIRLTDVVS 141


>gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
           49176]
 gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
           49176]
          Length = 370

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N  LIM++P+++ + LG     I  +++ S G +I L+K  GE++D+ +N + +AKGE+
Sbjct: 295 ENIGLIMDVPLEVTVELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEV 354

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++E+   +FG+R+ EI+
Sbjct: 355 VVIED---NFGIRITEIV 369


>gi|302185373|ref|ZP_07262046.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
           642]
          Length = 152

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143


>gi|302338091|ref|YP_003803297.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
           11293]
 gi|301635276|gb|ADK80703.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
           11293]
          Length = 375

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  L+M++ ++M + LG     I +++ + +G +I LDK  GE VDI +N++ IAKGE+ 
Sbjct: 292 NIGLLMDVYMEMTVELGRTKRLIKDILGMGEGTIIELDKLAGEPVDILVNHKLIAKGEVV 351

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVRV EI++
Sbjct: 352 VIDE---NFGVRVTEIVS 366


>gi|330972447|gb|EGH72513.1| flagellar motor switch protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 152

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143


>gi|227873537|ref|ZP_03991782.1| possible flagellar motor switch protein FliY [Oribacterium sinus
           F0268]
 gi|227840627|gb|EEJ51012.1| possible flagellar motor switch protein FliY [Oribacterium sinus
           F0268]
          Length = 472

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           DN +++M +P+++ + +G     + ++++ ++G ++ LDK  GE  D+ +N + IAKG+I
Sbjct: 389 DNREMLMKVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQADLYVNGECIAKGDI 448

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++EE   +FG+R+ EIL
Sbjct: 449 VVVEE---NFGIRITEIL 463


>gi|170694406|ref|ZP_02885560.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
 gi|170140829|gb|EDT09003.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
          Length = 155

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 63/105 (60%), Gaps = 12/105 (11%)

Query: 48  DNISEPISSDSNNILEK--------STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           DN SE IS+ +  + +         + ++ D+I++IPV+M + LG   + I NL+ L++G
Sbjct: 44  DNTSE-ISATTAGVFQPLSKVAPTTTRNDIDMILDIPVQMTVELGRTKLAIRNLLQLAQG 102

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 103 SVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 144


>gi|28869174|ref|NP_791793.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967549|ref|ZP_03395697.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato T1]
 gi|301382886|ref|ZP_07231304.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061096|ref|ZP_07252637.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302131288|ref|ZP_07257278.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28852414|gb|AAO55488.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927850|gb|EEB61397.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato T1]
 gi|330876027|gb|EGH10176.1| flagellar motor switch protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964685|gb|EGH64945.1| flagellar motor switch protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 152

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143


>gi|71733965|ref|YP_275530.1| flagellar motor switch protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484905|ref|ZP_05638946.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289629022|ref|ZP_06461976.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289651612|ref|ZP_06482955.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487823|ref|ZP_07005863.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554518|gb|AAZ33729.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157548|gb|EFH98628.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325125|gb|EFW81194.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329384|gb|EFW85377.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866456|gb|EGH01165.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330889049|gb|EGH21710.1| flagellar motor switch protein [Pseudomonas syringae pv. mori str.
           301020]
 gi|330986500|gb|EGH84603.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331011075|gb|EGH91131.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 152

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143


>gi|330953759|gb|EGH54019.1| flagellar motor switch protein [Pseudomonas syringae Cit 7]
          Length = 152

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143


>gi|330808226|ref|YP_004352688.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376334|gb|AEA67684.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 152

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143


>gi|66046675|ref|YP_236516.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|289678974|ref|ZP_06499864.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
           FF5]
 gi|63257382|gb|AAY38478.1| Surface presentation of antigens (SPOA) protein [Pseudomonas
           syringae pv. syringae B728a]
 gi|330899438|gb|EGH30857.1| flagellar motor switch protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330940698|gb|EGH43709.1| flagellar motor switch protein [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330976006|gb|EGH76072.1| flagellar motor switch protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 152

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143


>gi|331016993|gb|EGH97049.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 152

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRLTDVIS 143


>gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
           35185]
 gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
           35185]
          Length = 398

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI+++P+++ + LG     I +++ L+ G ++ LDK  GE VDI +N + +AKGE+ 
Sbjct: 315 NIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVV 374

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+ +I++
Sbjct: 375 VIDE---NFGVRITDIVS 389


>gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Selenomonas sputigena ATCC 35185]
 gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Selenomonas sputigena ATCC 35185]
          Length = 394

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI+++P+++ + LG     I +++ L+ G ++ LDK  GE VDI +N + +AKGE+ 
Sbjct: 311 NIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVV 370

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FGVR+ +I++
Sbjct: 371 VIDE---NFGVRITDIVS 385


>gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetivibrio cellulolyticus CD2]
 gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetivibrio cellulolyticus CD2]
          Length = 410

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++P+++ + LG     I +++    G +I LDK  GE VDI +N + IAKGE+ 
Sbjct: 331 NIGLIMDVPLQVTVELGRTNRLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAKGEVV 390

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E    FGVR+ +I++
Sbjct: 391 VIDES---FGVRITDIIH 405


>gi|104782810|ref|YP_609308.1| flagellar motor switch protein [Pseudomonas entomophila L48]
 gi|95111797|emb|CAK16521.1| flagellar motor switch protein FliN [Pseudomonas entomophila L48]
          Length = 154

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 71  NLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 131 VVNE---KFGIRLTDVIS 145


>gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
           L-1]
 gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
           L-1]
          Length = 112

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 54/79 (68%), Gaps = 3/79 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           F L+ +IPV+M + +GS  ++++ +++L++G V+ LD++  + +DI +N   IAKGE+  
Sbjct: 27  FRLLADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEVVT 86

Query: 129 MEEDDTHFGVRVIEILNAQ 147
           +   +  +G+R++EI  A+
Sbjct: 87  V---NGRYGIRIVEIAAAE 102


>gi|330961231|gb|EGH61491.1| flagellar motor switch protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 153

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 70  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 129

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 130 VVNE---KFGIRLTDVIS 144


>gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
 gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
          Length = 375

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +LI ++P+++ + LG   M I  +++L +G ++ L+K  GE VD+ +N + IAKGE+ 
Sbjct: 293 NMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVV 352

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   +FG RV +I++
Sbjct: 353 VIDE---NFGFRVKDIIS 367


>gi|167579275|ref|ZP_02372149.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           TXDOH]
 gi|167617381|ref|ZP_02386012.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           Bt4]
          Length = 165

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 65  STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ST N  D+I++IPVKM + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+
Sbjct: 77  STHNDIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 136

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ ++ +    FG+R+ +I+ 
Sbjct: 137 GEVVVVND---KFGIRLTDIIT 155


>gi|237799246|ref|ZP_04587707.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022101|gb|EGI02158.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 153

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 70  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 129

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 130 VVNE---KFGIRLTDVIS 144


>gi|83721171|ref|YP_440588.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|83654996|gb|ABC39059.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
          Length = 143

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 8/98 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            +  P+S  + +    ST N  D+I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 43  GVFRPLSKAAAS----STHNDIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 98

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 99  AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 133


>gi|323527700|ref|YP_004229853.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
 gi|323384702|gb|ADX56793.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
          Length = 155

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 8/97 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S     +   ST N  D+I++IPV+M + LG   + I NL+ L++G V+ LD  
Sbjct: 55  GVFQPLS----KVAPTSTRNDIDMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGM 110

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 111 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 144


>gi|170722846|ref|YP_001750534.1| flagellar motor switch protein [Pseudomonas putida W619]
 gi|169760849|gb|ACA74165.1| flagellar motor switch protein FliN [Pseudomonas putida W619]
          Length = 154

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 71  NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 131 VVNE---KFGIRLTDVIS 145


>gi|107021593|ref|YP_619920.1| flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
 gi|116688063|ref|YP_833686.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           HI2424]
 gi|170731413|ref|YP_001763360.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
 gi|105891782|gb|ABF74947.1| Flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
 gi|116646152|gb|ABK06793.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           HI2424]
 gi|169814655|gb|ACA89238.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
          Length = 162

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 70/124 (56%), Gaps = 9/124 (7%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQ 80
           ++P  D   ++    +E  +Q       + +P+S  + +    ST N  ++I++IPVKM 
Sbjct: 35  EDPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS----STHNDIEMILDIPVKMT 90

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+
Sbjct: 91  VELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRL 147

Query: 141 IEIL 144
            +I+
Sbjct: 148 TDII 151


>gi|167034914|ref|YP_001670145.1| flagellar motor switch protein [Pseudomonas putida GB-1]
 gi|166861402|gb|ABY99809.1| flagellar motor switch protein FliN [Pseudomonas putida GB-1]
          Length = 154

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 71  NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 131 VVNE---KFGIRLTDVIS 145


>gi|327481258|gb|AEA84568.1| flagellar motor switch protein [Pseudomonas stutzeri DSM 4166]
          Length = 160

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ 
Sbjct: 77  NLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVV 136

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 137 VVNE---KFGIRLTDVIS 151


>gi|26991046|ref|NP_746471.1| flagellar motor switch protein [Pseudomonas putida KT2440]
 gi|24986078|gb|AAN69935.1|AE016632_6 flagellar motor switch protein FliN [Pseudomonas putida KT2440]
          Length = 161

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 78  NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 137

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 138 VVNE---KFGIRLTDVIS 152


>gi|325981183|ref|YP_004293585.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
 gi|325530702|gb|ADZ25423.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
          Length = 180

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLI++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 96  DIDLILDIPVQMTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 155

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    FG+R+ +I+
Sbjct: 156 VVND---KFGIRLTDII 169


>gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 368

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           + N  LIM++P+ + + +G    ++ +++N + G V+ LDK+    VDI +N Q IA+GE
Sbjct: 283 SGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGE 342

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + ++   D +FGVR+ EI+N
Sbjct: 343 VVVI---DDNFGVRITEIVN 359


>gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1]
 gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1]
          Length = 154

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 71  NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 131 VVNE---KFGIRLTDVIS 145


>gi|5921671|gb|AAD56295.1| FliN [Pseudomonas putida]
 gi|313497807|gb|ADR59173.1| FliN [Pseudomonas putida BIRD-1]
          Length = 160

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 77  NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 136

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 137 VVNE---KFGIRLTDVIS 151


>gi|206890622|ref|YP_002249867.1| flagellar motor switch protein FliN [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742560|gb|ACI21617.1| flagellar motor switch protein FliN [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 139

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
            T + D I++IP+++ +++G   + +  L+ L++G V+ LDK  GE +++ +N + + +G
Sbjct: 53  KTRDIDFILDIPLELVVVIGRTRILVQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRG 112

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R+ +I++ Q
Sbjct: 113 EVVVVNE---KFGIRITDIISPQ 132


>gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
 gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
          Length = 107

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           DN  L+ +IP+++ + +GS  ++++ L++L+ G V+ LD++  E +DI +N   +AKGE+
Sbjct: 20  DNLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAKGEV 79

Query: 127 TIMEEDDTHFGVRVIEILNA 146
             +   +  FG+RV++I+ A
Sbjct: 80  VTV---NGKFGIRVVDIVAA 96


>gi|70729041|ref|YP_258775.1| flagellar motor switch protein [Pseudomonas fluorescens Pf-5]
 gi|68343340|gb|AAY90946.1| flagellar motor switch protein FliN [Pseudomonas fluorescens Pf-5]
          Length = 153

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 70  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 129

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 130 VVNE---KFGIRLTDVIS 144


>gi|254246640|ref|ZP_04939961.1| Surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia PC184]
 gi|124871416|gb|EAY63132.1| Surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia PC184]
          Length = 164

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 7/123 (5%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
           ++P  D   ++    +E  +Q       + +P+S  + +    + ++ ++I++IPVKM +
Sbjct: 37  EDPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTV 93

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ 
Sbjct: 94  ELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLT 150

Query: 142 EIL 144
           +I+
Sbjct: 151 DII 153


>gi|229591842|ref|YP_002873961.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
 gi|229363708|emb|CAY51093.1| probable flagellar motor switch protein [Pseudomonas fluorescens
           SBW25]
          Length = 155

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 72  NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 131

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 132 VVNE---KFGIRLTDVIS 146


>gi|226941270|ref|YP_002796344.1| FliN [Laribacter hongkongensis HLHK9]
 gi|226716197|gb|ACO75335.1| FliN [Laribacter hongkongensis HLHK9]
          Length = 141

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           +  N D+I++IPV M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+G
Sbjct: 54  APQNLDMILDIPVNMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQG 113

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+ ++ +    FG+R+ +I+
Sbjct: 114 EVVVVND---KFGIRLTDII 130


>gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
           degensii KC4]
 gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
           degensii KC4]
          Length = 360

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           SS +   L+      +LI++IP+K+ ++LG     I  ++ L  G ++ LD    E V+I
Sbjct: 259 SSPAPPPLDVDRSRLELILDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEI 318

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +N   +A+GE+ ++EE+   FGVR+  I+  Q
Sbjct: 319 LVNGVLVARGEVVVVEEN---FGVRITSIVTPQ 348


>gi|224826625|ref|ZP_03699726.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
 gi|224601226|gb|EEG07408.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
          Length = 143

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 59  NLDMILDIPVQLTVELGRTRIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 118

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++   +  FG+R+ +I+ 
Sbjct: 119 VV---NDKFGIRLTDIIT 133


>gi|307731350|ref|YP_003908574.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
 gi|307585885|gb|ADN59283.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
          Length = 155

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++ D+I++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+G
Sbjct: 68  TRNDIDMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 127

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+ ++ +    FG+R+ +I+
Sbjct: 128 EVVVVND---KFGIRLTDII 144


>gi|146282918|ref|YP_001173071.1| flagellar motor switch protein [Pseudomonas stutzeri A1501]
 gi|145571123|gb|ABP80229.1| flagellar motor switch protein FliN [Pseudomonas stutzeri A1501]
          Length = 193

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +GS  + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ 
Sbjct: 110 NLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVV 169

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 170 VVNE---KFGIRLTDVIS 184


>gi|27365288|ref|NP_760816.1| flagellar motor switch protein [Vibrio vulnificus CMCP6]
 gi|37680657|ref|NP_935266.1| flagellar motor switch protein [Vibrio vulnificus YJ016]
 gi|320155672|ref|YP_004188051.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
 gi|27361435|gb|AAO10343.1| Flagellar motor switch protein fliN [Vibrio vulnificus CMCP6]
 gi|37199406|dbj|BAC95237.1| polar flagellar switch protein FliN [Vibrio vulnificus YJ016]
 gi|319930984|gb|ADV85848.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
          Length = 136

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 10/101 (9%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
            ++ + S PI++D            D IM+IPV + + +G   + I NL+ L++G V+ L
Sbjct: 37  EELKDTSAPITADERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVEL 89

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  DRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
           8271]
          Length = 373

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI ++P+++ + LG     I +++ L  G V+ LD+  GE VD+ +N + IAK E+
Sbjct: 289 NNLDLIFDVPLQVSVELGKANKTIKDILELGPGSVVELDRIAGEPVDMIVNGKLIAKCEV 348

Query: 127 TIMEEDDTHFGVRVIEILN 145
            ++ E    FG+R+ EI+N
Sbjct: 349 VVINE---TFGIRITEIIN 364


>gi|91223553|ref|ZP_01258818.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269965695|ref|ZP_06179808.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91191639|gb|EAS77903.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269829763|gb|EEZ83999.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 136

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 10/100 (10%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           ++ + S PIS D            D IM+IPV + + +G   + I NL+ L++G V+ LD
Sbjct: 38  ELKDTSSPISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELD 90

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 91  RLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|262393596|ref|YP_003285450.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
 gi|262337190|gb|ACY50985.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
          Length = 136

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E +   S+ I E      D IM+IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 37  EELKDTSSPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGES 96

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 97  LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
           BAA-613]
          Length = 368

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++P+ + + +G    ++ +++N S G V+ LDK+    VDI +N Q IA+GE+ 
Sbjct: 285 NLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVV 344

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++   D +FGVR+ EI+N +
Sbjct: 345 VI---DDNFGVRISEIVNTR 361


>gi|254506934|ref|ZP_05119073.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
           16]
 gi|323491453|ref|ZP_08096637.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
 gi|323496547|ref|ZP_08101601.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
 gi|219550219|gb|EED27205.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
           16]
 gi|323314322|gb|EGA67402.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
 gi|323318391|gb|EGA71348.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
          Length = 136

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 62/106 (58%), Gaps = 10/106 (9%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           M  Q +++++ S PIS D            D I++IPV + + +G   + I NL+ L++G
Sbjct: 32  MSAQLDELEDTSSPISDDERR-------KLDTILDIPVTISMEVGRSQISIRNLLQLNQG 84

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            V+ L++  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 85  SVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF]
 gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens
           QYMF]
          Length = 393

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N  LI ++P+ + + LG    +IS ++    G +I L+K VGE +DI +N Q +AKGE+
Sbjct: 310 ENIALIQDVPLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEV 369

Query: 127 TIMEEDDTHFGVRVIEIL 144
            +++E+   +G+R+ +I+
Sbjct: 370 VVIDEN---YGIRITDIV 384


>gi|134294172|ref|YP_001117907.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
 gi|134137329|gb|ABO53072.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
          Length = 169

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 8/121 (6%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILG 84
           L D   +    N + ++       + +P+S  + +    ST N  ++I++IPVKM + LG
Sbjct: 46  LDDWAAALAEQNEQPVVAGATGAGVFQPLSKAAAS----STHNDIEMILDIPVKMTVELG 101

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD   GE +D+ +N   +A+GE+ ++ +    FG+R+ +I+
Sbjct: 102 RTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLLAQGEVVVVND---KFGIRLTDII 158

Query: 145 N 145
            
Sbjct: 159 T 159


>gi|330445374|ref|ZP_08309026.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489565|dbj|GAA03523.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 129

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E ++ +S  I +      D IM+IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 30  EELTDESTPITDDERRKLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGES 89

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|206561842|ref|YP_002232607.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           J2315]
 gi|198037884|emb|CAR53828.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           J2315]
          Length = 151

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  + +    ST N  ++I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 51  GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 106

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 107 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 141


>gi|171316889|ref|ZP_02906098.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
 gi|171097970|gb|EDT42788.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
          Length = 172

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  + +    ST N  ++I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 72  GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 127

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 128 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 162


>gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
           35243]
 gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
           35239]
 gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
           35243]
 gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
           35239]
          Length = 248

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 62/102 (60%), Gaps = 3/102 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           K + ++ + P +S ++   E+  ++  L+ ++ + +   +G   + + ++++LS G VI 
Sbjct: 142 KKEGESATTPPASQASATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 201

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           LD+  G + D+ +N + IA GEI +++E+   +G+R+ EI++
Sbjct: 202 LDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 240


>gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
           DSM 12885]
 gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
           DSM 12885]
          Length = 287

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S    DL++++P+++ + LG     +  ++ ++ G V+ LD+  GE VD+ +N + IA+G
Sbjct: 201 SRGTLDLVLDVPLQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARG 260

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ +++E   +FG+R+ +I++
Sbjct: 261 EVVVIDE---NFGIRITDIVS 278


>gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
 gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
          Length = 370

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 70/112 (62%), Gaps = 11/112 (9%)

Query: 42  IQKNDVDNISEPI---SSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVN 95
           IQKN V ++S P+   S +S  I++ +++       +++IP+ + + LG   + +  ++ 
Sbjct: 257 IQKNPV-SVS-PVQFQSFESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQVME 314

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           LS G +I LDK  GE VDI +N + IA+GE+ +++E   +FGVR+ EI++ Q
Sbjct: 315 LSVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDE---NFGVRITEIVSPQ 363


>gi|172059106|ref|YP_001806758.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
 gi|171991623|gb|ACB62542.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
          Length = 163

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  + +    ST N  ++I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 63  GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 118

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153


>gi|90579935|ref|ZP_01235743.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90438820|gb|EAS64003.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 129

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E ++ D+  I +      D IM+IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 30  EELTDDTVAITDDERRKLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGES 89

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|170698079|ref|ZP_02889160.1| flagellar motor switch protein FliN [Burkholderia ambifaria
           IOP40-10]
 gi|170137040|gb|EDT05287.1| flagellar motor switch protein FliN [Burkholderia ambifaria
           IOP40-10]
          Length = 163

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  + +    ST N  ++I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 63  GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 118

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153


>gi|88813209|ref|ZP_01128449.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
 gi|88789531|gb|EAR20658.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
          Length = 138

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + LG   + I NL+ L++G V+ LD+  GE +D+ +N   +A GE+ 
Sbjct: 55  NLDVILDVPVTLSMELGRTQIDIRNLLQLNQGSVVELDRLAGEPLDVMVNGTLVAHGEVV 114

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 115 VVNE---RFGIRLTDVVS 129


>gi|269961628|ref|ZP_06175990.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833669|gb|EEZ87766.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 136

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 46  DVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           DVD I     E +   S  I E      D IM+IPV + + +G   + I NL+ L++G V
Sbjct: 27  DVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSV 86

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 87  VELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp.
           MED105]
 gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp.
           MED105]
          Length = 149

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           +  Q +D    S      + ++   + ++ D+I++IPV++ + LG   + I +++ L++G
Sbjct: 37  LFAQASDAKPASGLFQPFAGSVASGTQNDIDMILDIPVQLTVELGRTKIPIKHILQLAQG 96

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            VI LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 97  SVIELDGLAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIIT 139


>gi|186477686|ref|YP_001859156.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
 gi|184194145|gb|ACC72110.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
          Length = 154

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 70  DIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 129

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    FG+R+ +I+
Sbjct: 130 VVND---KFGIRLTDII 143


>gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas
           maltophilia K279a]
 gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14]
 gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas
           maltophilia K279a]
 gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14]
          Length = 111

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 64/105 (60%), Gaps = 8/105 (7%)

Query: 45  NDVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           ND+D + EP  +  +++     +    N D+I+++PV + + +G   + I NL+ L++G 
Sbjct: 2   NDIDAL-EPTPAQFSSLQADEANGPDLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGS 60

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           V+ L++  GES+D+ +N   IA GE+ ++ +    FGVR+ ++++
Sbjct: 61  VVELERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVS 102


>gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
 gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
          Length = 248

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           K + ++ + P +S +    E+  ++  L+ ++ + +   +G   + + ++++LS G VI 
Sbjct: 142 KKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 201

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           LD+  G + D+ +N + IA GEI +++E+   +G+R+ EI++
Sbjct: 202 LDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 240


>gi|258621112|ref|ZP_05716146.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
 gi|261209861|ref|ZP_05924162.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
 gi|262166226|ref|ZP_06033963.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
 gi|262170888|ref|ZP_06038566.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
 gi|258586500|gb|EEW11215.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
 gi|260841047|gb|EEX67572.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
 gi|261891964|gb|EEY37950.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
 gi|262025942|gb|EEY44610.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
          Length = 136

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 10/100 (10%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           ++ N + PIS D            D IM+IPV + + +G   + I NL+ L++G V+ LD
Sbjct: 38  ELKNTAPPISDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 90

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 91  RIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|34498584|ref|NP_902799.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
 gi|34104438|gb|AAQ60796.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
          Length = 147

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 63  NLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 122

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++   +  FG+R+ +I+ 
Sbjct: 123 VV---NDKFGIRLTDIIT 137


>gi|78064700|ref|YP_367469.1| Type III secretion system outer membrane O protein [Burkholderia
           sp. 383]
 gi|77965445|gb|ABB06825.1| Type III secretion system outer membrane O protein [Burkholderia
           sp. 383]
          Length = 163

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  + +    ST N  ++I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 63  GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 118

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 152


>gi|302387781|ref|YP_003823603.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1]
 gi|302198409|gb|ADL05980.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium saccharolyticum WM1]
          Length = 456

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E+  +N +LIM +P+++ + +G     +  ++  +KG ++ LDK  GE VD+ +N + IA
Sbjct: 373 EEQEENRELIMGVPLEVSVEIGRTRKLVKEILEFTKGSLVILDKLAGEQVDLYVNGRCIA 432

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
           KG++ ++   D +FG+R+ EI
Sbjct: 433 KGDVVVV---DDNFGIRITEI 450


>gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
 gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
          Length = 254

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           K + ++ + P +S +    E+  ++  L+ ++ + +   +G   + + ++++LS G VI 
Sbjct: 148 KKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 207

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           LD+  G + D+ +N + IA GEI +++E+   +G+R+ EI++
Sbjct: 208 LDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 246


>gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 400

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++P+ + + LG     I  +++L  G ++ L+K  GE VDI +N + IAKGE+ 
Sbjct: 317 NISLIMDVPLNVSVELGRTRKTIKEILDLGPGSIVQLEKLAGEPVDILVNGKLIAKGEVV 376

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E   ++GVRV  I++
Sbjct: 377 VIDE---NYGVRVTAIIS 391


>gi|115350087|ref|YP_771926.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
 gi|115280075|gb|ABI85592.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
          Length = 161

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  + +    ST N  ++I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 61  GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 116

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 117 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 150


>gi|261252330|ref|ZP_05944903.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
 gi|260935721|gb|EEX91710.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
          Length = 136

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 61/103 (59%), Gaps = 10/103 (9%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           Q +++++ S PIS D            D I++IPV + + +G   + I NL+ L++G V+
Sbjct: 35  QLDELEDTSSPISEDERR-------KLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVV 87

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            L++  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 88  ELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|209522294|ref|ZP_03270921.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
 gi|209497270|gb|EDZ97498.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
          Length = 153

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 69  DIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 128

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    FG+R+ +I+
Sbjct: 129 VVND---KFGIRLTDII 142


>gi|91785620|ref|YP_560826.1| flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
 gi|91689574|gb|ABE32774.1| Flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
          Length = 154

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++ D+I++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+G
Sbjct: 67  TRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 126

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+ ++ +    FG+R+ +I+
Sbjct: 127 EVVVVND---KFGIRLTDII 143


>gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427]
 gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium lentocellum DSM 5427]
          Length = 403

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           + DVD  +    S  N       +N DL+M++ +++ + LG    +I  ++    G +I 
Sbjct: 300 RADVDVQTPQFQSFDNRPKVYPKENMDLLMDVSLEVSVELGRTSRKIKEILEFGPGSIIE 359

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           L++ VGE VD+ +N + +A GE+ +++E+   FG+R+ +I+N +
Sbjct: 360 LNRLVGEPVDVLVNGKFVATGEVVVIDEN---FGIRITDIINPE 400


>gi|254251032|ref|ZP_04944350.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
 gi|124893641|gb|EAY67521.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
          Length = 166

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  + +    ST N  ++I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 66  GVFQPLSKAAPS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 121

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 122 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 155


>gi|86146128|ref|ZP_01064454.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|148976421|ref|ZP_01813127.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|218708831|ref|YP_002416452.1| flagellar motor switch protein [Vibrio splendidus LGP32]
 gi|85836075|gb|EAQ54207.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|145964244|gb|EDK29500.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|218321850|emb|CAV17825.1| Flagellar motor switch protein fliN [Vibrio splendidus LGP32]
          Length = 136

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 10/95 (10%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S PIS D            D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE
Sbjct: 43  SSPISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGE 95

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           S+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 96  SLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|292493589|ref|YP_003529028.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
 gi|291582184|gb|ADE16641.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
          Length = 152

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 13/121 (10%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--------NFDLIMNIPVKMQIILG 84
           S +   +    K   ++ +EP +  +  + E +TD        N DLI++IPV M + +G
Sbjct: 28  SGSRQGQTAASKAQAESSAEPYAPPT--LEELATDPTAAAKDINLDLILDIPVTMAMEIG 85

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I +L+ L++G V+ L++  GE +D+ +N   IA GE+ ++ E    FG+R+ +++
Sbjct: 86  RTRISIRDLLKLNRGSVVELERLAGEPLDVLVNGCLIAHGEVVVVNE---KFGIRLTDVI 142

Query: 145 N 145
           +
Sbjct: 143 S 143


>gi|187925748|ref|YP_001897390.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
           PsJN]
 gi|187716942|gb|ACD18166.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
           PsJN]
          Length = 154

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++ D+I++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+G
Sbjct: 67  TRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 126

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+ ++ +    FG+R+ +I+
Sbjct: 127 EVVVVND---KFGIRLTDII 143


>gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
           mobilis SJ95]
 gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
           mobilis SJ95]
          Length = 372

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 55/79 (69%), Gaps = 3/79 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            +L++++P+++++ LGS  + +  ++ L +G +I L+K  GE +DI  N + IA+GE+ +
Sbjct: 290 LELLLDVPLELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGEVVV 349

Query: 129 MEEDDTHFGVRVIEILNAQ 147
           ++E   +FG+RV EI++ +
Sbjct: 350 IDE---NFGIRVTEIVSLR 365


>gi|260893866|ref|YP_003239963.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
           KC4]
 gi|260866007|gb|ACX53113.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
           KC4]
          Length = 114

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+T   +L+  + +++  +LG   + +  L+ L +G VI LD+  GE+VD+ ++ QK  +
Sbjct: 22  KATTALELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAGEAVDLLLDGQKFGR 81

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ ++ E    F VRV+++   Q
Sbjct: 82  GEVMVLNE---RFVVRVLQVFPPQ 102


>gi|157961197|ref|YP_001501231.1| flagellar motor switch protein [Shewanella pealeana ATCC 700345]
 gi|157846197|gb|ABV86696.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
          Length = 126

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           SD   + E+     D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ 
Sbjct: 31  SDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVM 90

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 91  VNGTLIAHGEVVVVND---KFGIRLTDVIS 117


>gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC1989]
 gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC1989]
          Length = 150

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            DLI++IPV + + +GS  + I NL+ L++G VI LD+  GE +++ +N   IA GE+ +
Sbjct: 68  LDLILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPLNVLVNGTLIAHGEVVV 127

Query: 129 MEEDDTHFGVRVIEILN 145
           + E    FG+R+ ++++
Sbjct: 128 VNE---KFGIRMTDVIS 141


>gi|296157440|ref|ZP_06840275.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
 gi|295892212|gb|EFG71995.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
          Length = 154

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++ D+I++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+G
Sbjct: 67  TRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 126

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+ ++ +    FG+R+ +I+
Sbjct: 127 EVVVVND---KFGIRLTDII 143


>gi|161523222|ref|YP_001578234.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
           17616]
 gi|189348921|ref|YP_001944549.1| flagellar motor switch protein [Burkholderia multivorans ATCC
           17616]
 gi|221214538|ref|ZP_03587508.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
 gi|160340651|gb|ABX13737.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
           17616]
 gi|189332943|dbj|BAG42013.1| flagellar motor switch protein [Burkholderia multivorans ATCC
           17616]
 gi|221165428|gb|EED97904.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
          Length = 159

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  + +    ST N  ++I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 59  GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 114

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 115 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 148


>gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium
           HTCC2207]
 gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium
           HTCC2207]
          Length = 108

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D++ NIPV + + +G   ++I +L+ L++G V+ LD+  GE +D+ +NN  +A+GE+ 
Sbjct: 26  NADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVVELDRIAGEPLDLLVNNTLVAQGEVV 85

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ E    +GVR+  ++
Sbjct: 86  LVNE---RYGVRLTSVI 99


>gi|84388119|ref|ZP_00991015.1| flagellar motor switch protein [Vibrio splendidus 12B01]
 gi|84377186|gb|EAP94056.1| flagellar motor switch protein [Vibrio splendidus 12B01]
          Length = 136

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 10/95 (10%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S PIS D            D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE
Sbjct: 43  SSPISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGE 95

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           S+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 96  SLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|221201777|ref|ZP_03574814.1| flagellar motor switch protein FliN [Burkholderia multivorans
           CGD2M]
 gi|221207718|ref|ZP_03580726.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
 gi|221172564|gb|EEE05003.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
 gi|221178197|gb|EEE10607.1| flagellar motor switch protein FliN [Burkholderia multivorans
           CGD2M]
          Length = 159

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query: 49  NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +P+S  + +    ST N  ++I++IPVKM + LG   + I NL+ L++G V+ LD  
Sbjct: 59  GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 114

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 115 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 149


>gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
           DSM 13965]
          Length = 132

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             DL++++P+++ + LG     +  L+ ++ G V+ LD+  GE VD+ +N + IA+GE+ 
Sbjct: 49  TLDLLLDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVV 108

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E+   FG+R+ +I++
Sbjct: 109 VIDEN---FGIRITDIVS 123


>gi|295678045|ref|YP_003606569.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
 gi|295437888|gb|ADG17058.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
          Length = 154

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++ D+I++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+
Sbjct: 69  NDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEV 128

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++ +    FG+R+ +I+
Sbjct: 129 VVVND---KFGIRLTDII 143


>gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2143]
          Length = 152

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+IM+IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 69  DLDVIMDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 129 VVNE---KFGIRMTDVIS 143


>gi|28899015|ref|NP_798620.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836941|ref|ZP_01989608.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|260365239|ref|ZP_05777796.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
 gi|260878789|ref|ZP_05891144.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AN-5034]
 gi|260897384|ref|ZP_05905880.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           Peru-466]
 gi|260899943|ref|ZP_05908338.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AQ4037]
 gi|4322005|gb|AAD15908.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus]
 gi|28807234|dbj|BAC60504.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749714|gb|EDM60459.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|308088279|gb|EFO37974.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           Peru-466]
 gi|308094260|gb|EFO43955.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AN-5034]
 gi|308107230|gb|EFO44770.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AQ4037]
 gi|308115407|gb|EFO52947.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
 gi|328474448|gb|EGF45253.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
          Length = 136

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + S PI+ D            D IM+IPV + + +G   + I NL+ L++G V+ LD+  
Sbjct: 41  DTSRPITDDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLA 93

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 94  GESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB
           8052]
          Length = 398

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++P+ + ++LG     I +++NL  G +I LDK   E V+I +N ++IA GE+ 
Sbjct: 315 NIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALGEVV 374

Query: 128 IMEEDDTHFGVRVIEILNA 146
           +++E   +FG+R+  I+++
Sbjct: 375 VVDE---NFGIRITNIVSS 390


>gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
           R551-3]
 gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
           R551-3]
          Length = 111

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 8/105 (7%)

Query: 45  NDVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           ND+D + EP  +    +  +       N D+I+++PV + + +G   + I NL+ L++G 
Sbjct: 2   NDIDAL-EPTPAQFGTLQAEEGAGADLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGS 60

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           V+ L++  GES+D+ +N   IA GE+ ++ +    FGVR+ ++++
Sbjct: 61  VVELERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVS 102


>gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
           11-1]
          Length = 109

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   M I NL+ L++G VI L++  GE +D+ +N   IA GE+ 
Sbjct: 26  NLDVILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIELERGAGEPLDVYVNGTLIAHGEVV 85

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FGVR+ ++++
Sbjct: 86  VIND---RFGVRLTDVVS 100


>gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
           sp. MED92]
 gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
           sp. MED92]
          Length = 144

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S    D+I++IPV + + +G   + ISNL+ L++G VI LD+  GE +D+ +N   IA G
Sbjct: 58  SDPKLDVILDIPVTLSMEVGQTDIPISNLLQLNQGSVIELDRVAGEPLDVMVNGTLIAHG 117

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ +    +G+R+ ++++ Q
Sbjct: 118 EVVVVND---RYGIRLTDVISPQ 137


>gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Thermomicrobium
           roseum DSM 5159]
 gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Thermomicrobium
           roseum DSM 5159]
          Length = 128

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             D + ++ V++   LGS  M+I +++ L  G V+ LD+  GE V++TIN   IA+GE+ 
Sbjct: 43  GIDFLRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVV 102

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E    F VR+ EI++ +
Sbjct: 103 VVDE---KFAVRITEIVSPE 119


>gi|90411031|ref|ZP_01219045.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
 gi|90328244|gb|EAS44555.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
          Length = 129

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 10/95 (10%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S PIS D            D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE
Sbjct: 36  STPISDDERR-------KLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGE 88

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           S+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 89  SLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7]
 gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7]
          Length = 157

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +G   + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 74  NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 134 VVNE---KFGIRLTDVIS 148


>gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P
           phosphatase fliY) (Flagellar motor switch protein fliY)
           [NC10 bacterium 'Dutch sediment']
          Length = 324

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 54/77 (70%), Gaps = 3/77 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +  D+++++ +++ + LG   +QI +++ L  G ++ LDK+ G++VDI +N++ IAKGE+
Sbjct: 240 NGIDMLLDVNLQVSVELGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEV 299

Query: 127 TIMEEDDTHFGVRVIEI 143
            I++E+   FGVR+  I
Sbjct: 300 IIIDEN---FGVRLTSI 313


>gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa]
          Length = 157

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +G   + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 74  NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 134 VVNE---KFGIRLTDVIS 148


>gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1]
 gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58]
 gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
 gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
 gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1]
 gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
 gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN
 gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1]
 gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
 gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
 gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58]
 gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
          Length = 157

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +G   + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 74  NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 134 VVNE---KFGIRLTDVIS 148


>gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum JW20]
 gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum JW20]
          Length = 398

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++P+++ + LG     I +++    G +I LDK  GE VDI +N + IA GE+ 
Sbjct: 319 NIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVV 378

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E    FGVR+ +IL+
Sbjct: 379 VIDES---FGVRITDILH 393


>gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC
           27405]
 gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC
           27405]
          Length = 406

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++P+++ + LG     I +++    G +I LDK  GE VDI +N + IA GE+ 
Sbjct: 327 NIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVV 386

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E    FGVR+ +IL+
Sbjct: 387 VIDES---FGVRITDILH 401


>gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Paris]
 gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
           Paris]
          Length = 111

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 9/96 (9%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           N   P++ DS N      +  +LI++IPV + + +G   M I NL+ L++G ++ LD+  
Sbjct: 15  NQGNPLNPDSGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 68

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           G+ +D+ +N   +A GE+ ++ +    FGVR+ +I+
Sbjct: 69  GDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIV 101


>gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 2360]
 gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 2360]
 gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 1313]
          Length = 406

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++P+++ + LG     I +++    G +I LDK  GE VDI +N + IA GE+ 
Sbjct: 327 NIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVV 386

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E    FGVR+ +IL+
Sbjct: 387 VIDES---FGVRITDILH 401


>gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
           baltica SH 1]
 gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
           baltica SH 1]
 gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula
           baltica WH47]
          Length = 141

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           S N L ++  + DL+  + + ++I LG   M++  ++ L  G V+ LDK  G+ VDI +N
Sbjct: 54  SPNSLGEAAHDVDLLGEVEMDLRIELGRTQMRLEEVLRLRAGSVVALDKLAGDPVDIYVN 113

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + IA+GE+ +M +   +F VRV E++ A
Sbjct: 114 GRLIARGEVLVMND---NFCVRVTELVGA 139


>gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp]
 gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
          Length = 155

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 72  NLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 131

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 132 VVNE---KFGIRLTDVIS 146


>gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
 gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
          Length = 155

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 72  NLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 131

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 132 VVNE---KFGIRLTDVIS 146


>gi|300311367|ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074152|gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum
           seropedicae SmR1]
          Length = 151

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           +++I   + ++ D I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N
Sbjct: 57  ADDIKTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVN 116

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144
              IA+GE+ ++ +    FG+R+ +I+
Sbjct: 117 GCLIAQGEVVVVND---KFGIRLTDII 140


>gi|260767698|ref|ZP_05876633.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260617207|gb|EEX42391.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315179470|gb|ADT86384.1| flagellar motor switch protein [Vibrio furnissii NCTC 11218]
          Length = 136

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 10/101 (9%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +++ + + PIS D            D IM+IPV + + +G   + I NL+ L++G V+ L
Sbjct: 37  DELKDTTSPISDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVEL 89

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  DRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|15642124|ref|NP_231756.1| flagellar motor switch protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121727203|ref|ZP_01680370.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
 gi|153213272|ref|ZP_01948684.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
 gi|153803022|ref|ZP_01957608.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
 gi|153818985|ref|ZP_01971652.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
 gi|153822883|ref|ZP_01975550.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|153828628|ref|ZP_01981295.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
 gi|227082250|ref|YP_002810801.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
 gi|254291361|ref|ZP_04962154.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
 gi|254849210|ref|ZP_05238560.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
 gi|297582023|ref|ZP_06943942.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
 gi|298497853|ref|ZP_07007660.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
 gi|9656675|gb|AAF95270.1| flagellar motor switch protein FliN [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121630448|gb|EAX62841.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
 gi|124116072|gb|EAY34892.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
 gi|124121420|gb|EAY40163.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
 gi|126510480|gb|EAZ73074.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
 gi|126519579|gb|EAZ76802.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|148875899|gb|EDL74034.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
 gi|150422691|gb|EDN14645.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
 gi|227010138|gb|ACP06350.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
 gi|254844915|gb|EET23329.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
 gi|297533718|gb|EFH72560.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
 gi|297542186|gb|EFH78236.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
          Length = 138

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 10/100 (10%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           ++ N + PI+ D            D IM+IPV + + +G   + I NL+ L++G V+ LD
Sbjct: 40  ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 92

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 93  RIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 129


>gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2]
          Length = 151

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +G   + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 68  NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 127

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 128 VVNE---KFGIRLTDVIS 142


>gi|153834118|ref|ZP_01986785.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|156975422|ref|YP_001446329.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116]
 gi|148869488|gb|EDL68486.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|156527016|gb|ABU72102.1| hypothetical protein VIBHAR_03153 [Vibrio harveyi ATCC BAA-1116]
          Length = 136

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + S PI+ D            D IM+IPV + + +G   + I NL+ L++G V+ LD+  
Sbjct: 41  DTSSPITDDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLA 93

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 94  GESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|121586780|ref|ZP_01676562.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
 gi|153825567|ref|ZP_01978234.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
 gi|229507790|ref|ZP_04397295.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
 gi|229511973|ref|ZP_04401452.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|229513776|ref|ZP_04403238.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
 gi|229519109|ref|ZP_04408552.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
 gi|229522078|ref|ZP_04411495.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
 gi|229524127|ref|ZP_04413532.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
           VL426]
 gi|229528863|ref|ZP_04418253.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
 gi|229607335|ref|YP_002877983.1| flagellar motor switch protein [Vibrio cholerae MJ-1236]
 gi|255745136|ref|ZP_05419085.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
 gi|262153474|ref|ZP_06028604.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
 gi|262191374|ref|ZP_06049564.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
 gi|121548947|gb|EAX58986.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
 gi|149740718|gb|EDM54817.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
 gi|229332637|gb|EEN98123.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
 gi|229337708|gb|EEO02725.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
           VL426]
 gi|229341003|gb|EEO06008.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
 gi|229343798|gb|EEO08773.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
 gi|229348957|gb|EEO13914.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
 gi|229351938|gb|EEO16879.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|229355295|gb|EEO20216.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
 gi|229369990|gb|ACQ60413.1| flagellar motor switch protein FliN [Vibrio cholerae MJ-1236]
 gi|255736966|gb|EET92362.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
 gi|262030711|gb|EEY49345.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
 gi|262032749|gb|EEY51297.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
 gi|327484653|gb|AEA79060.1| Flagellar motor switch protein FliN [Vibrio cholerae LMA3894-4]
          Length = 136

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 10/100 (10%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           ++ N + PI+ D            D IM+IPV + + +G   + I NL+ L++G V+ LD
Sbjct: 38  ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 90

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 91  RIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
           12809]
          Length = 299

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DL+++I V + + +GS  M + +++ +  G++I LD+   E V++ INN+ IA+G
Sbjct: 212 SPSNLDLLLDIDVPVSVKMGSTKMFLKDILTMGSGNIIELDESADEPVELVINNKVIARG 271

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ I+   D +FG R+ EI++
Sbjct: 272 EVVIV---DGYFGFRIKEIVS 289


>gi|260772331|ref|ZP_05881247.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
           69.14]
 gi|260611470|gb|EEX36673.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
           69.14]
          Length = 136

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 10/101 (9%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +++ + S PI+ D            D IM+IPV + + +G   + I NL+ L++G V+ L
Sbjct: 37  DELKDTSPPITEDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVEL 89

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  DRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 95

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ++  N  ++ N+ +++ + LG   M +  L+ L+ GDVI LD+     VD+ +N   +AK
Sbjct: 6   ETAANLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTLVAK 65

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ ++   D  FGVR++EI+++
Sbjct: 66  GEVVVV---DDEFGVRILEIISS 85


>gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
 gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
          Length = 106

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E  ++  DLI++IPV + + +G   M I NL+ L++G ++ LD+  G+ +D+ +N   +A
Sbjct: 18  EADSEKMDLILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDRLAGDPLDVLVNGTLVA 77

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
            GE+ ++ +    FGVR+ +I++
Sbjct: 78  HGEVVVVND---KFGVRLTDIVS 97


>gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
           25644]
 gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
           25644]
          Length = 409

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           DN DL+M+IP+ + ++LG+    +  +++ + G VI L+K   E +DI +N + IA+GE+
Sbjct: 325 DNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEV 384

Query: 127 TIMEEDDTHFGVRVIEILN 145
            ++ +   +FGVR+  IL+
Sbjct: 385 VVIND---NFGVRITNILS 400


>gi|218778862|ref|YP_002430180.1| flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760246|gb|ACL02712.1| Flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
           AK-01]
          Length = 119

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IP+ + + LG   M+I +L+ L +G V+ L K  GE ++I +N +  A+GE+ +
Sbjct: 37  LDFILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVV 96

Query: 129 MEEDDTHFGVRVIEILNAQ 147
           + E    FGVR+ +I++ Q
Sbjct: 97  VNE---KFGVRLTDIVSPQ 112


>gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58]
 gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58]
          Length = 111

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 59/92 (64%), Gaps = 9/92 (9%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +P+S  +NN        F L+ +IPV+M + +GS  ++++ +++L++G ++ LD++  + 
Sbjct: 15  DPVSKMTNN------RQFKLLADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELDRQADDL 68

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +DI +N   IAKGE+  +   +  +G+R+++I
Sbjct: 69  LDIMVNGALIAKGEVVTV---NGRYGIRIVDI 97


>gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
 gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
          Length = 122

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           + K   +      +PVK+ + L S  + + +L  + +GDVI LD+ VGE++DI +N   +
Sbjct: 34  IRKPLKHLSFFQQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRVNGALL 93

Query: 122 AKGEITIMEEDDTHFGVRVIEI 143
            KGE+    E    +GVR++E+
Sbjct: 94  GKGEVV---EVGGRYGVRLLEV 112


>gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
 gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
          Length = 153

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM+IPV + + LG+  + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ 
Sbjct: 70  DLDLIMDIPVVLSMELGNTEIAIRNLMQLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVV 129

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    +G+R+ ++++
Sbjct: 130 VVND---KYGIRLTDVVS 144


>gi|260776476|ref|ZP_05885371.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607699|gb|EEX33964.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 136

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 10/106 (9%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           M  Q +++ +   PIS D            D I++IPV + + +G   + I NL+ L++G
Sbjct: 32  MAAQLDELQDTGSPISEDERR-------KLDTILDIPVTISMEVGRSQISIRNLLQLNQG 84

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            V+ L++  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 85  SVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
 gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
          Length = 147

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV + + +G   + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 64  DLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 123

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 124 VVNE---KFGIRMTDVIS 138


>gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7]
 gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7]
          Length = 360

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+  N DLIM++P++  ++LG     I ++++L  G V+ L+K   E ++I +N + IA+
Sbjct: 273 KTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAE 332

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ ++ E    FG+R+  IL+ +
Sbjct: 333 GEVVVINE---SFGIRITNILSKE 353


>gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
 gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
          Length = 419

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 61/105 (58%), Gaps = 10/105 (9%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           Q    +N   P+ S+         +N  L+M++P+++ + +GS   +I +++  S+G +I
Sbjct: 316 QLAQFENFEAPLGSEQK-------ENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTII 368

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            L+++ G  VD+ +N   IA+G++ ++   D +F VR+ EI+ ++
Sbjct: 369 ELERQAGAPVDVMVNGNLIARGDVVVI---DDNFAVRITEIVKSK 410


>gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides]
 gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides]
          Length = 152

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N  L+ NI V++ + +G   M I +L+ LS+G V+ LD+  G+ +D+ +N   IAKG
Sbjct: 67  GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 126

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R  +I+  +
Sbjct: 127 EVVMVGE---RFGIRFGQIIEPE 146


>gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 408

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           ++    +N D+++++ +++ + LG    +I  +++ S+G +I LDK VGE +DI +N + 
Sbjct: 322 VVPTGAENIDILLDVALEVSVELGRTKKKIREILDFSEGSIIELDKLVGEPIDILVNGKF 381

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
           IA GE+ +++E+   FGVR+  I+  +
Sbjct: 382 IASGEVVVIDEN---FGVRIKSIIKPE 405


>gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus
           degradans 2-40]
 gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40]
          Length = 135

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV + + +G   + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 52  DLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 111

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 112 VVNE---KFGIRMTDVIS 126


>gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis]
 gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis]
          Length = 150

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV++ + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 67  DLDVILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 126

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 127 VVNE---KFGIRMTDVIS 141


>gi|226225726|ref|YP_002759832.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
 gi|226088917|dbj|BAH37362.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
          Length = 141

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           + +PV ++  LG   M +  ++ L +G VI LD+  GE +DI + +++ A+GE+ ++ E 
Sbjct: 63  LTLPVSIE--LGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVVLGE- 119

Query: 133 DTHFGVRVIEIL 144
             HFGVR+  +L
Sbjct: 120 --HFGVRITRVL 129


>gi|253998476|ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
 gi|313200551|ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688]
 gi|253985155|gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
 gi|312439867|gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688]
          Length = 145

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           + ++ ++ D I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   I
Sbjct: 55  MSETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 114

Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
           A+GE+ ++ +    FG+R+ +I+ 
Sbjct: 115 AQGEVVVVND---KFGIRLTDIIT 135


>gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107]
 gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107]
          Length = 133

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 10/97 (10%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           I EP   +SN        + D+I++IPV + + +G   + I NL+ L++G VI LD+  G
Sbjct: 39  IPEPGKRNSN-------PDLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAG 91

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           E +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 92  EPLDVLVNGTLIAHGEVVVVNE---KFGIRMTDVISP 125


>gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 156

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 18/124 (14%)

Query: 32  SSPTNNS----EMLIQKNDVDNISEPISSDSNNILEKSTD------NFDLIMNIPVKMQI 81
           +SPT  S    + +I  + +D  + P + DS   L+   D      N D+I+++PV + +
Sbjct: 32  ASPTRRSLPGLQQMINSDTLD--ASPATFDS---LQAEQDQNAADLNLDVILDVPVTLSL 86

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ ++ +    FG+R+ 
Sbjct: 87  EVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND---RFGIRLT 143

Query: 142 EILN 145
           ++++
Sbjct: 144 DVVS 147


>gi|163801853|ref|ZP_02195750.1| flagellar motor switch protein [Vibrio sp. AND4]
 gi|159174361|gb|EDP59165.1| flagellar motor switch protein [Vibrio sp. AND4]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + S PI+ D            D IM+IPV + + +G   + I NL+ L++G V+ LD+  
Sbjct: 41  DTSSPITDDERR-------KLDSIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLA 93

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 94  GESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase
           [Carnobacterium sp. 17-4]
 gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase
           [Carnobacterium sp. 17-4]
          Length = 359

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+  N DLIM++P++  ++LG     I ++++L  G V+ L+K   E ++I +N + IA+
Sbjct: 272 KTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAE 331

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ ++ E    FG+R+  IL+ +
Sbjct: 332 GEVVVINE---SFGIRITNILSKE 352


>gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
           c2]
 gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
           c2]
          Length = 139

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +++M++PV + + +G   + I +L+ L++G ++ LD+  GE +D+ +N   IA+GE+ 
Sbjct: 56  NLEVLMDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRLAGEPLDVLVNGTLIARGEVV 115

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 116 VINE---KFGIRLTDVIS 130


>gi|269103168|ref|ZP_06155865.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163066|gb|EEZ41562.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 128

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E ++ DS  + +      D I++IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 29  EELTDDSAPVSDDERRKLDSILDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRVAGES 88

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 89  LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 119


>gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
 gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
          Length = 101

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 62/102 (60%), Gaps = 7/102 (6%)

Query: 49  NISEPISSDSNN---ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            I+ P +SDS +   + E      DL++++ V++ + LGSC + +  ++ LS G ++ L 
Sbjct: 2   TITTP-ASDSGSETKVSENDRKALDLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLA 60

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +R  + V + +N++ +A GE+ ++EE   +FG+++ EI+  Q
Sbjct: 61  QRATDPVGLFVNDKLVAYGEVVVVEE---NFGIKITEIVGGQ 99


>gi|149188093|ref|ZP_01866388.1| flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148838081|gb|EDL55023.1| flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PIS D            D IM+IPV + + +G   + I NL+ L++G V+ LD+  GES+
Sbjct: 45  PISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGESL 97

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 98  DVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira
           defluvii]
 gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira
           defluvii]
          Length = 124

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
            +  N + +++IP+++ + +GS  M I  L+ L +G VI L+K  GE +++ +NN+ +A+
Sbjct: 37  PANKNIEFVLDIPLQVTVQIGSTRMLIRELLQLGQGSVIELNKLAGEPMEVLVNNKLVAR 96

Query: 124 GEITIMEEDDTHFGVRVIEIL 144
           GE+ ++ E    FG+R+ +++
Sbjct: 97  GEVVVVNE---KFGIRLTDVV 114


>gi|224370776|ref|YP_002604940.1| FliN [Desulfobacterium autotrophicum HRM2]
 gi|223693493|gb|ACN16776.1| FliN [Desulfobacterium autotrophicum HRM2]
          Length = 113

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +++    D I++IP+ + + LG   M +++L+ L +G ++ L+K  GE +++ IN + IA
Sbjct: 24  QQTGRELDFILDIPLDLSVELGRARMLVNDLLQLGQGSIVELNKLAGEPLEVYINRKLIA 83

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
           +GE+ ++ E    FGVR+ +I+
Sbjct: 84  RGEVVVVNE---KFGVRLTDII 102


>gi|127512305|ref|YP_001093502.1| flagellar motor switch protein [Shewanella loihica PV-4]
 gi|126637600|gb|ABO23243.1| flagellar motor switch protein FliN [Shewanella loihica PV-4]
          Length = 127

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           ++  S  + E+     D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE +D
Sbjct: 30  LADSSKPLTEEEAAKLDTIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLD 89

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
           6192]
 gi|306532337|gb|ADN01871.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
           6192]
 gi|315186375|gb|EFU20135.1| flagellar motor switch protein FliN [Spirochaeta thermophila DSM
           6578]
          Length = 350

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  L+M++ +++ + LG     +  ++ + +G +I LDK  GE VDI +N++ IA+GE+ 
Sbjct: 267 NISLLMDVYMELTVELGRTKKMVKEILAMGEGTIIELDKLAGEPVDILVNHKLIARGEVV 326

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E+   FGVRV EI++
Sbjct: 327 VIDEN---FGVRVTEIIS 341


>gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 347

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
           + P   +  +++     NI + +       +  + +  +LI++IP+K++++LG     I 
Sbjct: 229 TEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVVLGRTRRPIK 288

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +++   G +I LD+ V E V++ +N   +AKGEI ++ E+   FG+++ +IL+ +
Sbjct: 289 EILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGEN---FGIKINQILSPK 341


>gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1]
 gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
          Length = 411

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI++IP+K+ +ILG     I +++ ++ G V+ LD    E VDI +N   +A GE+ 
Sbjct: 325 NLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILVNGTLVATGEVV 384

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E   +FG+R+  I++
Sbjct: 385 VVNE---NFGIRITNIIS 399


>gi|71906404|ref|YP_283991.1| Type III secretion system outer membrane O protein [Dechloromonas
           aromatica RCB]
 gi|71846025|gb|AAZ45521.1| Type III secretion system outer membrane O protein [Dechloromonas
           aromatica RCB]
          Length = 147

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D+I++IPV++ + LG   + I NL+ L+ G V+ LD   GE +D+ +N   IA+GE+ +
Sbjct: 64  LDMILDIPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVV 123

Query: 129 MEEDDTHFGVRVIEIL 144
           + +    FG+R+ +I+
Sbjct: 124 VND---KFGIRLTDII 136


>gi|83859386|ref|ZP_00952907.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852833|gb|EAP90686.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
          Length = 125

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 63/102 (61%), Gaps = 6/102 (5%)

Query: 46  DVDNISEPISSDSNNILE---KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           D + + EP +  +  +++   ++  +   + ++PV +  +LG   + +++L+ L+ G V+
Sbjct: 21  DPEPMGEPANGAAQALIDEEVRTAVDLAPVFDVPVNISAVLGKAHVDVNSLLRLTSGSVL 80

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            LD++VGE++DI +N++ +A+GE+ ++   D   GV + EI+
Sbjct: 81  ELDRKVGEAIDIYVNSRLVARGEVVVV---DDRLGVTMTEII 119


>gi|163750542|ref|ZP_02157780.1| flagellar motor switch protein [Shewanella benthica KT99]
 gi|161329697|gb|EDQ00686.1| flagellar motor switch protein [Shewanella benthica KT99]
          Length = 127

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           FD IM+IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ +
Sbjct: 45  FDTIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVV 104

Query: 129 MEEDDTHFGVRVIEILN 145
           + +    FG+R+ ++++
Sbjct: 105 VND---KFGIRLTDVIS 118


>gi|302878291|ref|YP_003846855.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
           ES-2]
 gi|302581080|gb|ADL55091.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
           ES-2]
          Length = 148

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 11/99 (11%)

Query: 53  PISSDSNNILEK--------STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           P ++   ++ EK        + ++ D+I++IPV++ + LG   M I NL+ L++G V+ L
Sbjct: 41  PPAAGKAHVFEKFGAAGSAATPNDLDMILDIPVQLTVELGRTKMPIKNLLQLAQGSVVEL 100

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
               GE +D+ IN   IA+GE+ ++ +     G+R+ +I
Sbjct: 101 SGMAGEPLDVMINGFLIAQGEVVVVND---KLGIRLTDI 136


>gi|126175120|ref|YP_001051269.1| flagellar motor switch protein [Shewanella baltica OS155]
 gi|153001444|ref|YP_001367125.1| flagellar motor switch protein [Shewanella baltica OS185]
 gi|160876169|ref|YP_001555485.1| flagellar motor switch protein [Shewanella baltica OS195]
 gi|217972624|ref|YP_002357375.1| flagellar motor switch protein [Shewanella baltica OS223]
 gi|304409951|ref|ZP_07391570.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|307302336|ref|ZP_07582094.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|125998325|gb|ABN62400.1| flagellar motor switch protein FliN [Shewanella baltica OS155]
 gi|151366062|gb|ABS09062.1| flagellar motor switch protein FliN [Shewanella baltica OS185]
 gi|160861691|gb|ABX50225.1| flagellar motor switch protein FliN [Shewanella baltica OS195]
 gi|217497759|gb|ACK45952.1| flagellar motor switch protein FliN [Shewanella baltica OS223]
 gi|304351360|gb|EFM15759.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|306914374|gb|EFN44795.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|315268365|gb|ADT95218.1| flagellar motor switch protein FliN [Shewanella baltica OS678]
          Length = 126

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS  I +      D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +
Sbjct: 32  DSRPITKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLDVMV 91

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 92  NGTLIAHGEVVVVND---KFGIRLTDVIS 117


>gi|167623387|ref|YP_001673681.1| flagellar motor switch protein [Shewanella halifaxensis HAW-EB4]
 gi|167353409|gb|ABZ76022.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
          Length = 125

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 10/104 (9%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           ++ ++  N S P+S D            D IM+IPV + + +G   + I NL+ L++G V
Sbjct: 23  VEFDEFSNESAPLSEDE-------VSKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSV 75

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 76  VELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 116


>gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
 gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
          Length = 174

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +G   + I +L+ L++G V+ LD+  GE +D+ +N   IA GE+ 
Sbjct: 91  NIDVILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVV 150

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 151 VVNE---RFGIRLTDVIS 165


>gi|150388449|ref|YP_001318498.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
           QYMF]
 gi|149948311|gb|ABR46839.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
           QYMF]
          Length = 143

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N   I ++P+ + + LG    +IS ++    G +I ++K VGE VDI +N Q +AKGE+
Sbjct: 60  ENISTIQDVPLSVTVELGRTVKKISEVLEFGPGTIIEVEKLVGEHVDILVNGQYVAKGEV 119

Query: 127 TIMEEDDTHFGVRVIEI 143
            +++E   ++G R+ EI
Sbjct: 120 VVIDE---NYGTRITEI 133


>gi|89075521|ref|ZP_01161932.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89048793|gb|EAR54364.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 129

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E ++ ++  I +      D IM+IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 30  EELTDETVPITDDERRKLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGES 89

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|329901243|ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549175|gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 137

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 53  DIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 112

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ +I++
Sbjct: 113 VVND---KFGIRLTDIIS 127


>gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct]
          Length = 158

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV + + +G   + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 74  NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133

Query: 128 IMEEDDTHFGVRVIEILN 145
            + E    FG+R+ ++++
Sbjct: 134 AVNE---KFGIRLTDVIS 148


>gi|54294678|ref|YP_127093.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Lens]
 gi|53754510|emb|CAH15994.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
           Lens]
          Length = 109

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 16/109 (14%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           N +E L Q N       P++ D  N      +  +LI++IPV + + +G   M I NL+ 
Sbjct: 7   NTTEQLNQGN-------PLNPDPGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQ 53

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           L++G ++ LD+  G+ +D+ +N   +A GE+ ++ +    FGVR+ +I+
Sbjct: 54  LNQGGIVALDRLAGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIV 99


>gi|262404471|ref|ZP_06081026.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
 gi|262349503|gb|EEY98641.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
          Length = 136

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 7/104 (6%)

Query: 46  DVDNI-SEPISSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           DVD I + P+    N     S D     D IM+IPV + + +G   + I NL+ L++G V
Sbjct: 27  DVDEILAAPLEELKNTAPAISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSV 86

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 87  VELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|188592198|ref|YP_001796796.1| flim: flagellar motor switching and energizing component.
           flin/mopa/spao family. [Cupriavidus taiwanensis LMG
           19424]
 gi|170938572|emb|CAP63559.1| FliM: flagellar motor switching and energizing component.
           fliN/mopA/spaO family [Cupriavidus taiwanensis LMG
           19424]
          Length = 148

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + ++I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 64  DIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVV 123

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ +I+ 
Sbjct: 124 VVND---KFGIRLTDIIT 138


>gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein
           [Janthinobacterium sp. Marseille]
 gi|151280202|gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein
           [Janthinobacterium sp. Marseille]
          Length = 139

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 62  LEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           L+  T N  D I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   
Sbjct: 48  LKTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCL 107

Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
           IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 108 IAQGEVVVVND---KFGIRLTDIIT 129


>gi|209966468|ref|YP_002299383.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|209959934|gb|ACJ00571.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 105

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 50/73 (68%), Gaps = 3/73 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I+++PV++ + LG   M+IS L+ L   DV+ L++ VGE VD+ +N++ +A+GE+ ++  
Sbjct: 20  ILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVNDRLVARGELVVV-- 77

Query: 132 DDTHFGVRVIEIL 144
            D   G+ ++E++
Sbjct: 78  -DGRLGLTIVELM 89


>gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
          Length = 112

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DL+M++PV + + +G   M I  L+ L+ G V+T D+ V E +D+ +N   +A+GE+ 
Sbjct: 28  DLDLLMDVPVYLTVEVGRRRMTIKELLALASGSVVTFDRSVTEPMDLMVNGTLVARGEVV 87

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
             E     FG+R++++++ +
Sbjct: 88  SAE---GQFGLRLVDVVSPK 104


>gi|256830497|ref|YP_003159225.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
           4028]
 gi|256579673|gb|ACU90809.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
           4028]
          Length = 188

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I++IP+++   LGS  + I+ L+ L +G VI L+K  GE ++I +N + +A+GE  
Sbjct: 105 DLDFILDIPLEVSAQLGSTKLLINELLQLGQGSVIELNKLAGEPLEILVNGKLVARGEAV 164

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+ +I++
Sbjct: 165 VINE---KFGVRLTDIIS 179


>gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
 gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
          Length = 124

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T +F  I ++P++++  LG   M +  +++L  G VI LDK  GE VD+ +N+  +AKGE
Sbjct: 41  TADFKRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGE 100

Query: 126 ITIMEEDDTHFGVRV 140
           + ++   +  FGVR+
Sbjct: 101 VVVI---NDAFGVRI 112


>gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
 gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
          Length = 352

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 9/119 (7%)

Query: 33  SPTNNSEMLIQKNDVDNISEPI--SSDSNNILEKST----DNFDLIMNIPVKMQIILGSC 86
           +P   + +   K + +  S+P+  S  +   L  S     DN DLI+++P+ + ++LG  
Sbjct: 228 TPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVNDGDNLDLILDVPLDLSVVLGRS 287

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
              I ++++ + G VI L+K   E ++I +N + IA GE+ ++ E   +FGVR+  IL+
Sbjct: 288 KKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVINE---NFGVRITNILS 343


>gi|73539703|ref|YP_300070.1| Type III secretion system outer membrane O protein [Ralstonia
           eutropha JMP134]
 gi|72123040|gb|AAZ65226.1| Type III secretion system outer membrane O protein [Ralstonia
           eutropha JMP134]
          Length = 142

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + ++I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 58  DIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVV 117

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ +I+ 
Sbjct: 118 VVND---KFGIRLTDIIT 132


>gi|83647848|ref|YP_436283.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
 gi|83635891|gb|ABC31858.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
          Length = 172

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 88  DLDVILDIPVTISMEVGNTQIAIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 147

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 148 MVNE---KFGIRLTDVIS 162


>gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC2047]
          Length = 132

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D+I++IPV + + +G+  + I NL+ L+KG VI LD+  GE +D+ +N   IA GE+ +
Sbjct: 50  LDVILDIPVTVSMEVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGEVVV 109

Query: 129 MEEDDTHFGVRVIEILN 145
           + E    FG+R+ ++++
Sbjct: 110 VNE---KFGIRLTDVVS 123


>gi|116694516|ref|YP_728727.1| flagellar motor switch protein/type III secretory pathway protein
           [Ralstonia eutropha H16]
 gi|113529015|emb|CAJ95362.1| flagellar motor switch protein/type III secretory pathway protein
           [Ralstonia eutropha H16]
          Length = 149

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + ++I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 65  DIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVV 124

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ +I+ 
Sbjct: 125 VVND---KFGIRLTDIIT 139


>gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17029]
          Length = 98

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N  L+ NI V++ + +G   M I +L+ LS+G V+ LD+  G+ +D+ +N   IAKG
Sbjct: 13  GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R  +I+  +
Sbjct: 73  EVVMVGE---RFGIRFGQIIEPE 92


>gi|52842018|ref|YP_095817.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|296107382|ref|YP_003619082.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
           2300/99 Alcoy]
 gi|52629129|gb|AAU27870.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|295649283|gb|ADG25130.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
           2300/99 Alcoy]
 gi|307610491|emb|CBX00063.1| flagellar motor switch protein FliN [Legionella pneumophila 130b]
          Length = 109

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 9/97 (9%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           N   P++ D  N      +  +LI++IPV + + +G   M I NL+ L++G ++ LD+  
Sbjct: 13  NQGNPLNPDPGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 66

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           G+ +D+ +N   +A GE+ ++ +    FGVR+ +I++
Sbjct: 67  GDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVS 100


>gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
 gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
          Length = 115

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E  S +S +   K   +      +PV++ + L S  M +  L  + +GDV+ LD+ VGE 
Sbjct: 17  EFFSENSASAQPKPKKDMSFFHQLPVQVTLELASAEMSLGELTQMGEGDVVALDRMVGEP 76

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +DI +N   + +GE+    E +  +GVR++E+
Sbjct: 77  LDIRVNGALLGRGEVV---EVNGRYGVRLLEV 105


>gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Corby]
 gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Corby]
          Length = 109

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 9/97 (9%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           N   P++ D  N      +  +LI++IPV + + +G   M I NL+ L++G ++ LD+  
Sbjct: 13  NQGNPLNPDPGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 66

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           G+ +D+ +N   +A GE+ ++ +    FGVR+ +I++
Sbjct: 67  GDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVS 100


>gi|54308124|ref|YP_129144.1| flagellar motor switch protein [Photobacterium profundum SS9]
 gi|46912550|emb|CAG19342.1| putative polar flagellar switch protein FliN [Photobacterium
           profundum SS9]
          Length = 129

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 10/95 (10%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S PIS D            D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE
Sbjct: 36  STPISDDERR-------KLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGE 88

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 89  PLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|289208345|ref|YP_003460411.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
 gi|288943976|gb|ADC71675.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
          Length = 203

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++PV + + +G   + I NL+ L++G V+ LD+  GE++D+ +N   IA GE+ 
Sbjct: 120 NLQMVLDVPVTISMEIGRSRIPIRNLLQLNQGSVVELDRLAGEALDVLVNGTLIAHGEVV 179

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 180 VVNE---KFGIRLTDVIS 194


>gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans]
 gi|55977143|gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans]
 gi|133738988|emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans]
          Length = 141

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 58  SNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           S   L+  T N  D I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +
Sbjct: 46  SGGDLKTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLV 105

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 106 NGCLIAQGEVVVVND---KFGIRLTDII 130


>gi|254440105|ref|ZP_05053599.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
           307]
 gi|198255551|gb|EDY79865.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
           307]
          Length = 98

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T+    + NI V+M I +G   + IS L+ L++G V+ L++  GE +DI +N  KIAKGE
Sbjct: 14  TEKLRALENIEVEMSIEVGRTDISISELLRLNEGSVVELNRLAGEPLDILVNGTKIAKGE 73

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + ++ E    FG+R  EI++ +
Sbjct: 74  VVMVGE---RFGIRFSEIVDPE 92


>gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
 gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
 gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
 gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
          Length = 98

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N  L+ NI V++ + +G   M I +L+ LS+G V+ LD+  G+ +D+ +N   IAKG
Sbjct: 13  GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R  +I+  +
Sbjct: 73  EVVMVGE---RFGIRFGQIIEPE 92


>gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17025]
          Length = 98

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N  L+ NI V++ + +G   M I +L+ LS+G V+ LD+  G+ +D+ +N   IAKG
Sbjct: 13  GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R  +I+  +
Sbjct: 73  EVVMVGE---RFGIRFGQIIEPE 92


>gi|118581838|ref|YP_903088.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
           2379]
 gi|118504548|gb|ABL01031.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
           2379]
          Length = 99

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D I++IP+++ + LG   + + +++ L++G V+ L K  GE +DI +N++ +A+GE  
Sbjct: 16  NLDFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDIFVNSKLVARGEAV 75

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+++I++
Sbjct: 76  VVNE---KFGVRLVDIVS 90


>gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
           ATCC 12755]
          Length = 352

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           DN DLI+++P+ + ++LG     I ++++ + G VI L+K   E ++I +N + IA GE+
Sbjct: 268 DNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEV 327

Query: 127 TIMEEDDTHFGVRVIEILN 145
            ++ E   +FGVR+  IL+
Sbjct: 328 VVINE---NFGVRITNILS 343


>gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
 gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
          Length = 153

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +  ++ +LI++IPV++ + LG   + I N++ L++G V+ LD   GE +D+ +N   IA+
Sbjct: 63  QPGNDINLILDIPVQLTVELGRTRIPIKNILQLAQGSVVELDALAGEPMDVLVNGYLIAQ 122

Query: 124 GEITIMEEDDTHFGVRVIEIL 144
           GE+ ++ +    FG+R+ +I+
Sbjct: 123 GEVVVVND---KFGIRLTDIV 140


>gi|91792692|ref|YP_562343.1| flagellar motor switch protein [Shewanella denitrificans OS217]
 gi|91714694|gb|ABE54620.1| Flagellar motor switch FliN [Shewanella denitrificans OS217]
          Length = 127

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS  I ++     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +
Sbjct: 33  DSRPITKEEAAKLDSILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 92

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 93  NGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
 gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
          Length = 190

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +  DL+M+IP+++ + +GS  + +  ++ L+  +++ LDK + + VD+ +N + IAKGE+
Sbjct: 102 EKLDLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGEL 161

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
             +E+   HFG+++  I+  Q
Sbjct: 162 YTVED---HFGIKITSIITVQ 179


>gi|113969633|ref|YP_733426.1| flagellar motor switch protein [Shewanella sp. MR-4]
 gi|114046863|ref|YP_737413.1| flagellar motor switch protein [Shewanella sp. MR-7]
 gi|113884317|gb|ABI38369.1| flagellar motor switch protein FliN [Shewanella sp. MR-4]
 gi|113888305|gb|ABI42356.1| flagellar motor switch protein FliN [Shewanella sp. MR-7]
          Length = 124

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS  I +      D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +
Sbjct: 30  DSQPISKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLDVMV 89

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  NGTLIAHGEVVVVND---KFGIRLTDVIS 115


>gi|189426341|ref|YP_001953518.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
 gi|189422600|gb|ACD96998.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
          Length = 99

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E+   N + I++IP+++ + LG   + + +++ L++G V+ L K  GE +DI +N++ +A
Sbjct: 11  EQEKKNLEFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDIFVNSKLVA 70

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE  ++ E    FGVR+++I++
Sbjct: 71  RGEAVVVNE---KFGVRLVDIVS 90


>gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. campestris]
          Length = 112

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 55/84 (65%), Gaps = 4/84 (4%)

Query: 63  EKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           + +TD N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   I
Sbjct: 23  QDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLI 82

Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
           A GE+ ++ +    FG+R+ ++++
Sbjct: 83  AHGEVVVIND---RFGIRLTDVVS 103


>gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
 gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
          Length = 137

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 66/104 (63%), Gaps = 6/104 (5%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           ++++D+   P    ++  L K   N +L+M++P+++ + LGS   QI +L+ L+KG ++ 
Sbjct: 33  RDEMDHAENPFDVSTDGDLPK---NLELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVE 89

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           L+K   + ++I +N++ +A GE+ ++++     G+R+ +I++ +
Sbjct: 90  LEKEADDPLEIYVNDRLLAYGEVVMIKD---KLGIRITDIVSLK 130


>gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
 gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
 gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
 gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
 gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
 gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
          Length = 352

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           DN DLI+++P+ + ++LG     I ++++ + G VI L+K   E ++I +N + IA GE+
Sbjct: 268 DNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEV 327

Query: 127 TIMEEDDTHFGVRVIEILN 145
            ++ E   +FGVR+  IL+
Sbjct: 328 VVINE---NFGVRITNILS 343


>gi|114562368|ref|YP_749881.1| flagellar motor switch protein [Shewanella frigidimarina NCIMB 400]
 gi|114333661|gb|ABI71043.1| flagellar motor switch protein FliN [Shewanella frigidimarina NCIMB
           400]
          Length = 127

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS  I ++     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +
Sbjct: 33  DSRPITKEEAAKLDGILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 92

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 93  NGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a]
          Length = 414

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N  L+M++P+++ + +GS   +I +++  S+G +I L+++ G  VD+ +N   IA+G++
Sbjct: 328 ENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDV 387

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            ++   D +F VR+ EI+ ++
Sbjct: 388 VVI---DDNFAVRITEIVKSK 405


>gi|291613060|ref|YP_003523217.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
           ES-1]
 gi|291583172|gb|ADE10830.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
           ES-1]
          Length = 135

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++ D+I++IPVK+ + LG   M I NL+ L++G V+ L    GE +D+ IN   IA+G
Sbjct: 48  AHNDLDMILDIPVKLTVELGHTKMPIKNLLQLAQGSVVELAGLAGEPLDVLINGFLIAQG 107

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +     G+R+ +I+ 
Sbjct: 108 EVVVVND---KLGIRLTDIIT 125


>gi|120598258|ref|YP_962832.1| flagellar motor switch protein [Shewanella sp. W3-18-1]
 gi|146293664|ref|YP_001184088.1| flagellar motor switch protein [Shewanella putrefaciens CN-32]
 gi|120558351|gb|ABM24278.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
 gi|145565354|gb|ABP76289.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
 gi|319427063|gb|ADV55137.1| flagellar motor switch protein FliN [Shewanella putrefaciens 200]
          Length = 127

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS  I +      D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +
Sbjct: 33  DSQPISKADAAKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 92

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 93  NGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
           19865]
 gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
           19865]
          Length = 112

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 4/82 (4%)

Query: 65  STD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +TD N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA 
Sbjct: 25  ATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAH 84

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ ++ +    FG+R+ ++++
Sbjct: 85  GEVVVIND---RFGIRLTDVVS 103


>gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893]
 gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893]
          Length = 172

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 88  DLDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 147

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 148 MVNE---KFGIRLTDVIS 162


>gi|24374732|ref|NP_718775.1| flagellar motor switch protein [Shewanella oneidensis MR-1]
 gi|24349392|gb|AAN56219.1|AE015759_11 flagellar motor switch protein FliN [Shewanella oneidensis MR-1]
          Length = 124

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS  I +      D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +
Sbjct: 30  DSQPISKAEAAKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 89

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  NGTLIAHGEVVVVND---KFGIRLTDVIS 115


>gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
 gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
          Length = 125

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            DS ++ EK        + IP+++++++G   +++  L++L  G V+ LD  V   VDI 
Sbjct: 34  GDSQDLSEKVRR----FLEIPLELEVVIGRTTLKLGELLHLGPGSVVELDNHVESPVDIL 89

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +N + +AKGEI ++E+    FGVR+ +I+
Sbjct: 90  VNGKLVAKGEIVVVEDK---FGVRITDII 115


>gi|218672164|ref|ZP_03521833.1| flagellar motor switch protein [Rhizobium etli GR56]
          Length = 142

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 37/45 (82%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           T NF++IM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE
Sbjct: 97  TSNFEMIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGE 141


>gi|260222422|emb|CBA31970.1| Flagellar motor switch protein fliN [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 162

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 12/116 (10%)

Query: 38  SEMLIQKNDVDNISE-----PISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCM 88
           +E L+++   D   +     P+S D+        D    + +++++IPV++ + LG   +
Sbjct: 38  AEALLEQKSSDGAGDAAPGGPLSGDTPKPFTSGGDGHVNDINMVLDIPVQLSVELGRTKV 97

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            I +++ L +G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +++
Sbjct: 98  PIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVV 150


>gi|84514808|ref|ZP_01002171.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
           SKA53]
 gi|84510967|gb|EAQ07421.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
           SKA53]
          Length = 102

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           TD    + NI V+M + +G   + IS L+ L++G V+ LD+  GE +DI +N   IAKGE
Sbjct: 18  TDKLRALENIEVEMSVEVGRTEISISELLRLNEGSVVELDRLAGEPLDILVNGTLIAKGE 77

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           I ++ E    FG+R  +I++ +
Sbjct: 78  IVMVGE---RFGIRFSDIVDPE 96


>gi|94314218|ref|YP_587427.1| flagellar motor switch FliN [Cupriavidus metallidurans CH34]
 gi|93358070|gb|ABF12158.1| Flagellar motor switch FliN [Cupriavidus metallidurans CH34]
          Length = 156

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           +I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ 
Sbjct: 75  MILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVN 134

Query: 131 EDDTHFGVRVIEILN 145
           +    FG+R+ +I+ 
Sbjct: 135 D---KFGIRLTDIIT 146


>gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
 gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
          Length = 246

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           PL+ ++V +     E L+     D  + P +S +    ++     +++  + +++ + +G
Sbjct: 126 PLEGSDVVAALLVPEALLAHPADDTPALPTTSAAAPTGDRR--GIEMLHGVDMEVTVEIG 183

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              M +  L++L+ G V+ LD+  G   D+ +N + IA+GE+ +++ED   FG+R+ EI+
Sbjct: 184 RARMTVRELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDED---FGLRITEIV 240

Query: 145 N 145
            
Sbjct: 241 T 241


>gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
          Length = 118

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           D  SE   S  +N   K  +NF     +PV++ + L S  M +  L  + +GDVI LD+ 
Sbjct: 17  DIFSESAFSKPDNRKVKKNNNF--FQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRM 74

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           VGE +DI +N   + +GE+    E    +GVR++EI
Sbjct: 75  VGEPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 107


>gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium
           BAC17H8]
          Length = 110

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D+      S +N  L+ NI V + + +G   ++I +L+ L++G VI LD+  G+ +DI  
Sbjct: 17  DAETAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGSVIELDRLAGDPLDILA 76

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           N   IAKGE+ ++ E    FG+R  EI++
Sbjct: 77  NGTMIAKGEVVMVGE---RFGIRFTEIVD 102


>gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 112

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ ++++
Sbjct: 89  VVND---RFGIRLTDVVS 103


>gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 112

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ ++++
Sbjct: 89  VIND---RFGIRLTDVVS 103


>gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
 gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
          Length = 112

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ ++++
Sbjct: 89  VIND---RFGIRLTDVVS 103


>gi|288942629|ref|YP_003444869.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
           180]
 gi|288898001|gb|ADC63837.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
           180]
          Length = 148

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 4/85 (4%)

Query: 63  EKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           E ++D N ++++++PV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   I
Sbjct: 59  EPTSDVNLNMVLDVPVTISMEIGRTRIPIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLI 118

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
           A GE+ ++ E    FG+R+ ++++ 
Sbjct: 119 AHGEVVVVNE---KFGIRLTDVISP 140


>gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS155]
 gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS155]
          Length = 118

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           D  SE   S  +N   K  +NF     +PV++ + L S  M +  L  + +GDVI LD+ 
Sbjct: 17  DIFSESAFSKPDNRKVKKNNNF--FQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRM 74

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           VGE +DI +N   + +GE+    E    +GVR++EI
Sbjct: 75  VGEPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 107


>gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
           35937]
          Length = 112

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ ++++
Sbjct: 89  VIND---RFGIRLTDVVS 103


>gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 112

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ ++++
Sbjct: 89  VIND---RFGIRLTDVVS 103


>gi|269836615|ref|YP_003318843.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
           20745]
 gi|269785878|gb|ACZ38021.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
           20745]
          Length = 144

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + + ++ V++   LG+  MQI +++ L  G V+ L++  GE VDI +N   IA+GE+ 
Sbjct: 62  SIEFLRDVEVELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVV 121

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++E    F VRV+EI+  +
Sbjct: 122 VVDEK---FAVRVVEIVPPE 138


>gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 416

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N DLI ++ +++ + LG     I+ +++   G V+ LDK VGES+DI  N +KIA GE+
Sbjct: 333 ENMDLIKDVMLQITVELGKTVKPINEILDFKPGSVLELDKVVGESLDILANGKKIATGEV 392

Query: 127 TIMEEDDTHFGVRVIEIL 144
            +++E   ++G+R+ +I+
Sbjct: 393 VVIDE---NYGIRITDIV 407


>gi|170725981|ref|YP_001760007.1| flagellar motor switch protein [Shewanella woodyi ATCC 51908]
 gi|169811328|gb|ACA85912.1| flagellar motor switch protein FliN [Shewanella woodyi ATCC 51908]
          Length = 129

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E+     D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA
Sbjct: 41  EEDVAKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIA 100

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
            GE+ ++ +    FG+R+ ++++
Sbjct: 101 HGEVVVVND---KFGIRLTDVIS 120


>gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
           SRS30216]
 gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
           SRS30216]
          Length = 249

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             DL+ ++ + + + LG   M + +L+ L+ G V+ LD+  G   D+ +N Q IA+GE+ 
Sbjct: 170 TMDLLRDVQMDVTVELGRTSMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVV 229

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++ED   + +R+ EI+  +
Sbjct: 230 VVDED---YAIRITEIVTPE 246


>gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118]
 gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118]
          Length = 139

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 75/133 (56%), Gaps = 13/133 (9%)

Query: 20  MHID-NPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKS---TDNFDLI 72
           M ID  P +D  ++   + +E L+++   +  +EP   ++ D+++    S     + + +
Sbjct: 1   MAIDEKPAEDDGMA---DWAEALLEQKSSEPTAEPGGVLAGDTSHSFSSSDAPISDINRV 57

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++IPV++ + LG   + I +++ L +G V+ LD   GE +D+ +N   IA+GE+ ++ + 
Sbjct: 58  LDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND- 116

Query: 133 DTHFGVRVIEILN 145
              FG+R+ +++ 
Sbjct: 117 --KFGIRLTDVVT 127


>gi|88858100|ref|ZP_01132742.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
 gi|88819717|gb|EAR29530.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
          Length = 131

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E +S+    I ++     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE 
Sbjct: 32  EELSNQPAEITQEEKRKLDTILDIPVTISMEVGRSKISIRNLLQLNQGSVVELDRVAGEP 91

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++   +  FG+R+ ++++
Sbjct: 92  LDVLVNGTLIAHGEVVVV---NDKFGIRLTDVIS 122


>gi|254461964|ref|ZP_05075380.1| flagellar motor switch protein FliN [Rhodobacterales bacterium
           HTCC2083]
 gi|206678553|gb|EDZ43040.1| flagellar motor switch protein FliN [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 99

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D    + NI V+M I +G   + I+NL+ L++G V+ LD+  GE +DI +N   IAKGE+
Sbjct: 16  DKLRALENIEVQMSIEVGRTEITIANLLRLNEGSVVELDRLAGEPLDILVNGTMIAKGEV 75

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            ++ E    FG+R  +I++ +
Sbjct: 76  VMVGE---RFGIRFSDIVDPE 93


>gi|74317626|ref|YP_315366.1| flagellar motor switch/type III secretory pathway protein FliN
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057121|gb|AAZ97561.1| flagellar motor switch/type III secretory pathway protein FliN
           [Thiobacillus denitrificans ATCC 25259]
          Length = 132

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            ++ D I++IPV + + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE
Sbjct: 46  ANDIDFILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGE 105

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + ++ +    FGVR+ +I+ 
Sbjct: 106 VVVVND---KFGVRLTDIIT 122


>gi|71282178|ref|YP_268252.1| flagellar motor switch protein [Colwellia psychrerythraea 34H]
 gi|71147918|gb|AAZ28391.1| flagellar motor switch protein FliN [Colwellia psychrerythraea 34H]
          Length = 131

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E ++ D   I        D I++IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 32  EELTPDDAPITGDEKRKLDAILDIPVTISMEVGRSNISIRNLLQLNQGSVVELDRVAGES 91

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 92  LDVLVNGTLIAHGEVVVVND---KFGIRLTDVVS 122


>gi|285018172|ref|YP_003375883.1| flagellar motor switch/type III secretory pathway protein flin
           [Xanthomonas albilineans GPE PC73]
 gi|283473390|emb|CBA15895.1| probable flagellar motor switch/type III secretory pathway protein
           flin [Xanthomonas albilineans]
          Length = 112

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 59/100 (59%), Gaps = 6/100 (6%)

Query: 49  NISEPISSDS---NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           N +EP   +S     + E +  N D+I+++P+ + + +G   + I NL+ L++G V+ L+
Sbjct: 7   NQAEPAQFESLQQETVAETNDLNLDVILDVPITLSLEVGRSRIPIRNLLQLNQGSVVELE 66

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +  GE +D+ +N   IA GE+  + +    FGVR+ ++++
Sbjct: 67  RGAGEPLDVYVNGTLIAHGEVVTIND---RFGVRLTDVVS 103


>gi|325273550|ref|ZP_08139780.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
 gi|324101310|gb|EGB98926.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
          Length = 82

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ ++
Sbjct: 1   DVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVV 60

Query: 130 EEDDTHFGVRVIEILN 145
            E    FG+R+ ++++
Sbjct: 61  NE---KFGIRLTDVIS 73


>gi|322421723|ref|YP_004200946.1| flagellar motor switch protein FliN [Geobacter sp. M18]
 gi|320128110|gb|ADW15670.1| flagellar motor switch protein FliN [Geobacter sp. M18]
          Length = 101

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D IM+IP+++ + LG   + + +++ L++G V+ L K  GE +D+ +N++ +A+GE  
Sbjct: 18  NLDFIMDIPLQLTVELGRTKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAV 77

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+++I++
Sbjct: 78  VVND---KFGIRLLDIVS 92


>gi|197120187|ref|YP_002140614.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
 gi|253702496|ref|YP_003023685.1| flagellar motor switch protein FliN [Geobacter sp. M21]
 gi|197089547|gb|ACH40818.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
 gi|251777346|gb|ACT19927.1| flagellar motor switch protein FliN [Geobacter sp. M21]
          Length = 101

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D IM+IP+++ + LG   + + +++ L++G V+ L K  GE +D+ +N++ +A+GE  
Sbjct: 18  NLDFIMDIPLQLTVELGRSKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAV 77

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+++I++
Sbjct: 78  VVND---KFGIRLLDIVS 92


>gi|148266211|ref|YP_001232917.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
 gi|146399711|gb|ABQ28344.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
          Length = 103

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 63/98 (64%), Gaps = 7/98 (7%)

Query: 50  ISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           ++E I SD   NN LE    N + I++IP+++ + LG   + + +++ L++G V+ L K 
Sbjct: 2   VNEKIDSDELNNNSLE--VKNLEFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKL 59

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            GE +D+ +N++ +A+GE  ++ +    FG+R+++I++
Sbjct: 60  AGEPLDVFVNSKLVARGEAVVIND---KFGIRLVDIVS 94


>gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 103

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           ++D   +  K    F+ +++I V     LG+  + I  L+ L KG VI L+K  GESV++
Sbjct: 3   AADQEYVERKLLSGFENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVEL 62

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            INN+   KGE+ + E+   +  +R+ EIL+++
Sbjct: 63  YINNKIFGKGEVMVYEK---NLAIRINEILDSK 92


>gi|89068715|ref|ZP_01156101.1| Flagellar motor switch protein FliN [Oceanicola granulosus
           HTCC2516]
 gi|89045678|gb|EAR51740.1| Flagellar motor switch protein FliN [Oceanicola granulosus
           HTCC2516]
          Length = 132

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 52/77 (67%), Gaps = 2/77 (2%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + ++N+ +++ I+LG   M IS L+ LS+G +I LDKR+GE VD+ ++++ +A+G++ 
Sbjct: 51  SIEAMLNVGLEVNIVLGRSRMPISQLLKLSRGSIIELDKRIGEPVDMIVSDRLVARGDLV 110

Query: 128 IMEEDDTHFGVRVIEIL 144
            +   D   GV + EI+
Sbjct: 111 RV--GDNRVGVTLTEIV 125


>gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium
           HP15]
          Length = 163

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 79  DIDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 138

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 139 MVNE---KFGIRLTDVIS 153


>gi|332702323|ref|ZP_08422411.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552472|gb|EGJ49516.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 181

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E++  + D I++IP+++   LG   + I+ L+ L +G V+ L+K  GE ++I +N + +A
Sbjct: 93  EQTKRDLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVA 152

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE  ++ E    FG+R+ +I++
Sbjct: 153 RGEAVVINE---KFGIRLTDIIS 172


>gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 417

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +LI+++P+++ + LG     I  ++ L  G VI LD+  GE VD+ +N + IAK E+
Sbjct: 330 ENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLIAKCEV 389

Query: 127 TIMEEDDTHFGVRVIEILN 145
            ++ E    FG+R+ +I+ 
Sbjct: 390 VVINET---FGIRITDIVQ 405


>gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
 gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
          Length = 111

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
            DV +  +   +D  +    +  NFDL+  + +++ + +GS  M ++ L+ L +G VI L
Sbjct: 2   TDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIEL 61

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           D+   + +DI  N   IAKGEI  +   D  +G++V E++
Sbjct: 62  DRAATDLLDIYANGTLIAKGEIVSV---DGRYGIQVAEVV 98


>gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
 gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
          Length = 212

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 55/84 (65%), Gaps = 5/84 (5%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           EK+T   +L+ ++ + ++I LG   M + +++ L +G V+TLDK  G+ VDI +N + IA
Sbjct: 130 EKAT--LELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIA 187

Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
           +GE+ ++ +   +F VRV E+L+ 
Sbjct: 188 RGEVLVLND---NFCVRVAELLSG 208


>gi|157376190|ref|YP_001474790.1| flagellar motor switch protein [Shewanella sediminis HAW-EB3]
 gi|157318564|gb|ABV37662.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
          Length = 127

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E+     D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA
Sbjct: 39  EEDVAKLDSIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIA 98

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
            GE+ ++ +    FG+R+ ++++
Sbjct: 99  HGEVVVVND---KFGIRLTDVIS 118


>gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8]
 gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8]
          Length = 166

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 82  DIDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 141

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 142 MVNE---KFGIRLTDVIS 156


>gi|332994113|gb|AEF04168.1| flagellar motor switch protein [Alteromonas sp. SN2]
          Length = 133

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           +D   I ++     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ 
Sbjct: 38  TDDTPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 97

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 98  VNGTLIAHGEVVVVND---KFGIRLTDVIS 124


>gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter
           hydrocarbonoclasticus]
          Length = 166

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ 
Sbjct: 82  DIDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 141

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ ++++
Sbjct: 142 MVNE---KFGIRLTDVIS 156


>gi|149908449|ref|ZP_01897112.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
 gi|149808612|gb|EDM68547.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
          Length = 127

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E  S+D N    +     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE 
Sbjct: 28  EDFSNDDNAFSPEQQHKLDSILDIPVVISMEVGRSKISIRNLLQLNQGSVVELDRIAGEP 87

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 88  LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|209695732|ref|YP_002263662.1| flagellar motor switch protein [Aliivibrio salmonicida LFI1238]
 gi|208009685|emb|CAQ79984.1| polar flagellar switch protein FliN [Aliivibrio salmonicida
           LFI1238]
          Length = 127

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 11/92 (11%)

Query: 62  LEKSTDNF--------DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           LE++T  F        D I++IPV + + +G   + I NL+ L++G V+ LD+  GES+D
Sbjct: 30  LEETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGESLD 89

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51]
 gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 421

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N +LI+++P+++ + LG     I  ++ L  G VI LD+  GE VD+ +N + +AK E+
Sbjct: 334 ENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLVAKCEV 393

Query: 127 TIMEEDDTHFGVRVIEILN 145
            ++ E    FG+R+ +I+ 
Sbjct: 394 VVINET---FGIRITDIVQ 409


>gi|257095346|ref|YP_003168987.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047870|gb|ACV37058.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 145

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D+I++IPV++ + LG   + I NL+ L+ G V+ LD   GE +++ +N   IA+GE+ +
Sbjct: 62  LDMILDIPVQLAVELGRTRITIKNLLQLAHGSVVELDAMAGEPLNVFVNGTLIAQGEVVV 121

Query: 129 MEEDDTHFGVRVIEIL 144
           + +    FG+R+ +I+
Sbjct: 122 VND---KFGIRLTDIV 134


>gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
 gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
          Length = 118

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K   +      +PV++ + L S  M +  L  + +GDV+ LD+ VGE +DI +N   + +
Sbjct: 32  KPVKDISFFHQLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALLGR 91

Query: 124 GEITIMEEDDTHFGVRVIEI 143
           GE+    E +  +GVR++E+
Sbjct: 92  GEVV---EVNGRYGVRLLEV 108


>gi|262276387|ref|ZP_06054196.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
 gi|262220195|gb|EEY71511.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
          Length = 129

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IPV + + +G   + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ +
Sbjct: 47  LDAILDIPVTISMEVGRTNINIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVV 106

Query: 129 MEEDDTHFGVRVIEILN 145
           + +    FG+R+ ++++
Sbjct: 107 VND---KFGIRLTDVIS 120


>gi|298530626|ref|ZP_07018028.1| flagellar motor switch protein FliN [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510000|gb|EFI33904.1| flagellar motor switch protein FliN [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 187

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           ++ D+    E +  + D I++IP+ +   LG   + I+ L+ L +G VI L+K  GE ++
Sbjct: 90  LTEDAKKKPEGTKRDLDFILDIPLTVTAQLGGTQLLINELLQLGQGSVIELNKLAGEPME 149

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + +N + +A+GE  ++ E    FG+R+ +I++
Sbjct: 150 VLVNGKLVARGEAVVINE---KFGIRLTDIIS 178


>gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
           17241]
 gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
           17241]
          Length = 446

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DL+M + + + + +G    +I ++++  +G VI L+K+ G  VDI +N + +A+G
Sbjct: 356 SNANMDLLMGVSLDVSVEIGQTKRKIKDIIDFGQGTVIELNKQAGAPVDIVVNGRLLARG 415

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           ++ ++   D +FGVR+ EI+ 
Sbjct: 416 DVVVI---DDNFGVRITEIVG 433


>gi|124516301|gb|EAY57809.1| flagellar motor switch protein FliN [Leptospirillum rubarum]
 gi|206603144|gb|EDZ39624.1| flagellar motor switch protein FliN [Leptospirillum sp. Group II
           '5-way CG']
          Length = 125

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +  ++ D ++++P+ + + +G+  M I +L+ L +G V+ LDK  GE ++I IN++ +A+
Sbjct: 39  EPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVAR 98

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ ++ +    +GVR+ +I++
Sbjct: 99  GEVVMVND---KYGVRLTDIVS 117


>gi|117919798|ref|YP_868990.1| flagellar motor switch protein [Shewanella sp. ANA-3]
 gi|117612130|gb|ABK47584.1| flagellar motor switch protein FliN [Shewanella sp. ANA-3]
          Length = 124

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 10/95 (10%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+PIS       +      D I++IPV + + +G   + I NL+ L++G V+ LD+  GE
Sbjct: 31  SQPIS-------KAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGE 83

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 84  PLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115


>gi|147674715|ref|YP_001217647.1| flagellar motor switch protein [Vibrio cholerae O395]
 gi|146316598|gb|ABQ21137.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
 gi|227014021|gb|ACP10231.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
          Length = 138

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           ++ N + PI+ D            D IM+IPV + + +G   + I NL+ L++G V+ LD
Sbjct: 40  ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 92

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +   ES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 93  RIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 129


>gi|78224291|ref|YP_386038.1| flagellar motor switch FliN [Geobacter metallireducens GS-15]
 gi|78195546|gb|ABB33313.1| Flagellar motor switch FliN [Geobacter metallireducens GS-15]
          Length = 101

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E  T N + I++IP+++ + LG   + + +++ L++G V+ L K  GE +D+ +N++ +A
Sbjct: 13  ELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVA 72

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE  ++ E    FG+R+++I++
Sbjct: 73  RGEAVVVNE---KFGIRLVDIVS 92


>gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
 gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
          Length = 118

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K   +      +PV++ + L S  M +  L  + +GDV+ LD+ VGE +DI +N   + +
Sbjct: 32  KPVKDMSFFHQLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPLDIRVNGALLGR 91

Query: 124 GEITIMEEDDTHFGVRVIEI 143
           GE+    E +  +GVR++E+
Sbjct: 92  GEVV---EVNGRYGVRLLEV 108


>gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
 gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
          Length = 118

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S    +  K   +      +PV + + L S  M +  L  + +GDV+ LD+ VGE +DI 
Sbjct: 24  SHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPLDIR 83

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +N   + +GE+    E +  +GVR++E+
Sbjct: 84  VNGALLGRGEVV---EVNGRYGVRLLEV 108


>gi|294140211|ref|YP_003556189.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
 gi|293326680|dbj|BAJ01411.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
          Length = 127

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ +
Sbjct: 45  LDTIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVV 104

Query: 129 MEEDDTHFGVRVIEILN 145
           + +    FG+R+ ++++
Sbjct: 105 VND---KFGIRLTDVIS 118


>gi|332140590|ref|YP_004426328.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550612|gb|AEA97330.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 135

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           +D   I ++     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ 
Sbjct: 40  TDDAPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 99

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 100 VNGTLIAHGEVVVVND---KFGIRLTDVIS 126


>gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa]
 gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa]
          Length = 284

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 54/79 (68%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++ D ++++P+ + + +G+  M I +L+ L +G V+ LDK  GE ++I IN++ +A+GE+
Sbjct: 201 ESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEV 260

Query: 127 TIMEEDDTHFGVRVIEILN 145
            ++ +    +GVR+ +I++
Sbjct: 261 VMVND---KYGVRLTDIVS 276


>gi|303246796|ref|ZP_07333073.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
           JJ]
 gi|302491813|gb|EFL51693.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
           JJ]
          Length = 202

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I++IP+ +   LG   + I+ L+ L +G VI L+K  GE ++I +N + +A+GE  
Sbjct: 119 DLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEIYVNGKLVARGEAV 178

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+ +I++
Sbjct: 179 VINE---KFGVRLTDIIS 193


>gi|262167484|ref|ZP_06035190.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
 gi|262024056|gb|EEY42751.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
          Length = 136

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           ++ N + PI+ D            D IM+IPV + + +G   + I NL+ L++G V+ LD
Sbjct: 38  ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 90

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +   ES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 91  RIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|59712451|ref|YP_205227.1| flagellar motor switch protein [Vibrio fischeri ES114]
 gi|197335660|ref|YP_002156670.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
 gi|59480552|gb|AAW86339.1| flagellar motor switch component FliN [Vibrio fischeri ES114]
 gi|197317150|gb|ACH66597.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
          Length = 129

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      D I++IPV + + +G   + I NL+ L++G V+ LD+  GES+D+ +N   IA
Sbjct: 41  EDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIA 100

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
            GE+ ++ +    FG+R+ ++++
Sbjct: 101 HGEVVVVND---KFGIRLTDVIS 120


>gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter
           desulfuricans SSM1]
 gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter
           desulfuricans SSM1]
          Length = 292

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  N DL++++ + + + +GS  M + +++ L  G +I L++   E V++ +NN+ IA+G
Sbjct: 205 SGGNIDLLLDVEIPVSVKIGSTKMYLKDILELGPGKIIELEEYADEPVELLVNNKVIARG 264

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++   D +FG+R+ EI++
Sbjct: 265 EVVVV---DGYFGLRIQEIVS 282


>gi|119775424|ref|YP_928164.1| flagellar motor switch protein [Shewanella amazonensis SB2B]
 gi|119767924|gb|ABM00495.1| flagellar motor switch protein FliN [Shewanella amazonensis SB2B]
          Length = 124

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 10/95 (10%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           ++P+SS+            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE
Sbjct: 31  TKPLSSEE-------AAKLDAILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGE 83

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 84  PLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115


>gi|239909253|ref|YP_002955995.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
 gi|239799120|dbj|BAH78109.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
          Length = 186

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I++IP+ +   LG   + I+ L+ L +G VI L+K  GE ++I +N + +A+GE  
Sbjct: 103 DLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEIYVNGKLVARGEAV 162

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+ +I++
Sbjct: 163 VINE---KFGVRLTDIIS 177


>gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 390

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +LI++IP+K+ ++LG     I +++ ++ G V+ LD    E V+I +N   +A GE+ 
Sbjct: 306 NLELILDIPLKVSVVLGRTKRPIKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVV 365

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E   +FGVR+  I++
Sbjct: 366 VVNE---NFGVRITNIIS 380


>gi|332524238|ref|ZP_08400464.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
 gi|332107573|gb|EGJ08797.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
          Length = 144

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S ++ ++I++IPV++ + LG   + I +++ L++G V+ LD   GE +D+ +N   IA+G
Sbjct: 56  SGNDINMILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQG 115

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    FG+R+ +I+ 
Sbjct: 116 EVVVVND---KFGIRLTDIVT 133


>gi|239997092|ref|ZP_04717616.1| flagellar motor switch protein [Alteromonas macleodii ATCC 27126]
          Length = 135

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           +D   I ++     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ 
Sbjct: 40  TDDAPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 99

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 100 VNGTLIAHGEVVVVND---KFGIRLTDVIS 126


>gi|222053614|ref|YP_002535976.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
 gi|221562903|gb|ACM18875.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
          Length = 100

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D I++IP+++ + LG   + + +++ L++G V+ L K  GE +D+ +N++ +A+GE  
Sbjct: 17  NLDFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAGEPLDVFVNSKLVARGEAV 76

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++   +  FG+R+++I++
Sbjct: 77  VI---NDKFGIRLVDIVS 91


>gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
           51333]
 gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
           51333]
          Length = 250

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PI+  S    E+  ++  L+ ++ + +   +G   + + ++++LS G VI LD+  G + 
Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N + IA+GEI +++E+   +G+R+ EI++
Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240


>gi|283853449|ref|ZP_06370693.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
 gi|283571169|gb|EFC19185.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
          Length = 190

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I++IP+ +   LG   + I+ L+ L +G VI L+K  GE ++I +N + +A+GE  
Sbjct: 107 DLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEIYVNGKLVARGEAV 166

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+ +I++
Sbjct: 167 VINE---KFGVRLTDIIS 181


>gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65]
 gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65]
          Length = 185

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ +
Sbjct: 103 LDVILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVM 162

Query: 129 MEEDDTHFGVRVIEILN 145
           +   +  FG+R+ ++++
Sbjct: 163 V---NDKFGIRLTDVIS 176


>gi|317051534|ref|YP_004112650.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
 gi|316946618|gb|ADU66094.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
          Length = 330

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +++++I + + I +GS  + + +L+ L  G ++ LDK+ G+ V++ +N + IA+GE+ 
Sbjct: 246 NIEMLLDIDLAVIIRIGSTKIYLKDLLKLGSGSIVELDKKAGDPVELVVNKKVIARGEVV 305

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++   D +FG+R+ EIL+
Sbjct: 306 VI---DANFGLRINEILS 320


>gi|23013050|ref|ZP_00053002.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 94

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           DN + + ++ V++  +LG+  + I+ L+ L +G V+ LD++V + VD+ +N +++ + E+
Sbjct: 15  DNREAVYDVSVELSAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKRVCRAEV 74

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++E+   H  V + E+L
Sbjct: 75  VVVED---HLAVTITEVL 89


>gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 250

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PI+  S    E+  ++  L+ ++ + +   +G   + + ++++LS G VI LD+  G + 
Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N + IA+GEI +++E+   +G+R+ EI++
Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240


>gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 112

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 55  SSDSNNILEK-STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            ++S  I E+ S +N  ++ NI V + + +GS  ++I +L+ L++G VI LD+  G+ +D
Sbjct: 16  GAESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVIELDRLAGDPLD 75

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           I  N   IAKGE+ ++ E    FG+R  EI+  +
Sbjct: 76  ILANGTMIAKGEVVMVGE---RFGIRFSEIVAPE 106


>gi|331005447|ref|ZP_08328826.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
 gi|330420723|gb|EGG95010.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
          Length = 104

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 64/105 (60%), Gaps = 7/105 (6%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
           EM + K ++  +++ + S  +N+L     N D++ ++ +KMQ+ LG   +Q+  L+ + +
Sbjct: 5   EMSVSKAELKTLTQELLS-GDNLL---AGNIDVLKDLKIKMQVSLGETEIQVDKLMTMKE 60

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G V+ LD+     +DI IN + +A+G + ++++D   FGV++ EI
Sbjct: 61  GSVVKLDREANSPLDIFINGKLVARGVMVVVDDD---FGVQITEI 102


>gi|323700137|ref|ZP_08112049.1| flagellar motor switch protein FliN [Desulfovibrio sp. ND132]
 gi|323460069|gb|EGB15934.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
           ND132]
          Length = 183

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I++IP+++   LG   + I+ L+ L +G V+ L+K  GE ++I +N + +A+GE  
Sbjct: 100 DLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAV 159

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ +I++
Sbjct: 160 VINE---KFGIRLTDIIS 174


>gi|147678413|ref|YP_001212628.1| flagellar motor switch/type III secretory pathway protein
           [Pelotomaculum thermopropionicum SI]
 gi|146274510|dbj|BAF60259.1| flagellar motor switch/type III secretory pathway protein
           [Pelotomaculum thermopropionicum SI]
          Length = 126

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++ +++ + LG   M++  ++ L +G VI LDK +GE+V++ +N Q+ A+GE+ ++   +
Sbjct: 47  DVQIEISVELGQTVMKVREVLGLEQGSVIRLDKAIGEAVEVVLNEQRFARGEVVVI---N 103

Query: 134 THFGVRVIEILNAQ 147
             FGVR+  I   Q
Sbjct: 104 DSFGVRITSINRVQ 117


>gi|327254532|gb|EGE66148.1| surface presentation of antigens family protein [Escherichia coli
           STEC_7v]
          Length = 123

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 45  NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +DV  +++P  +D+    + ++ +D+  L+  IPV + + + S  + +++L+N+    VI
Sbjct: 16  DDVAPVTKPADADTLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 76  ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113


>gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 250

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PI+  S    E+  ++  L+ ++ + +   +G   + + ++++LS G VI LD+  G + 
Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N + IA+GEI +++E+   +G+R+ EI++
Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240


>gi|307824487|ref|ZP_07654712.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
           SV96]
 gi|307734471|gb|EFO05323.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
           SV96]
          Length = 126

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 43  NLDVILDVPVTISMEIGRTQINIRNLLQLNQGSVVELERFAGEPLDVLVNGTLIAHGEVV 102

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ +    FG+R+ ++++
Sbjct: 103 VIND---KFGIRLTDVIS 117


>gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
           43063]
 gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
           43063]
          Length = 250

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PI+  S    E+  ++  L+ ++ + +   +G   + + ++++LS G VI LD+  G + 
Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N + IA+GEI +++E+   +G+R+ EI++
Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240


>gi|330828807|ref|YP_004391759.1| flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
 gi|328803943|gb|AEB49142.1| Flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
          Length = 130

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PIS++            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +
Sbjct: 39  PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 91

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N   IA GE+ ++   +  FG+R+ ++++
Sbjct: 92  DVLVNGTLIAHGEVVVV---NDKFGIRLTDVIS 121


>gi|311992319|gb|ADQ26733.1| flagellar motor switch protein [Aeromonas hydrophila]
          Length = 129

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PIS++            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +
Sbjct: 38  PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 90

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 91  DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|317151985|ref|YP_004120033.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942236|gb|ADU61287.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 174

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I++IP+++   LG   + I+ L+ L +G V+ L+K  GE ++I +N + +A+GE  
Sbjct: 91  DLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAV 150

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FG+R+ +I++
Sbjct: 151 VINE---KFGIRLTDIIS 165


>gi|117618193|ref|YP_855912.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559600|gb|ABK36548.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 130

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PIS++            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +
Sbjct: 39  PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 91

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 92  DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121


>gi|242281270|ref|YP_002993399.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
           2638]
 gi|242124164|gb|ACS81860.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
           2638]
          Length = 229

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  + D I++IP+ +   LG   M I+ L+ L  G V+ L K  GE ++I +N + +A+G
Sbjct: 143 SRRDLDFILDIPLDVSAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARG 202

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E  ++ E    FG+R+ +I++
Sbjct: 203 EAVVINE---KFGIRLTDIIS 220


>gi|39995530|ref|NP_951481.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
 gi|39982293|gb|AAR33754.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
 gi|298504530|gb|ADI83253.1| flagellar motor switch protein FliN [Geobacter sulfurreducens
           KN400]
          Length = 101

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N + I++IP+++ + LG   + + +++ L++G V+ L K  GE +D+ +N++ +A+GE  
Sbjct: 18  NLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAV 77

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+++I++
Sbjct: 78  VVNE---KFGVRLVDIVS 92


>gi|308048760|ref|YP_003912326.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
 gi|307630950|gb|ADN75252.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
          Length = 129

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 57/100 (57%), Gaps = 8/100 (8%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +++    P+  DS     +     D I++IPV + + +G   + I NL+ L++G V+ LD
Sbjct: 29  ELEQFDAPMGGDS-----EQQRKLDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELD 83

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +  GE +D+ +N   +A GE+ ++ +    FG+R+ ++++
Sbjct: 84  RVAGEPLDVMVNGTLVAHGEVVVVND---KFGIRLTDVIS 120


>gi|74055042|gb|AAZ95847.1| FliN [Aeromonas hydrophila]
          Length = 130

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PIS++            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +
Sbjct: 39  PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 91

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 92  DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121


>gi|219681459|ref|YP_002467844.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682015|ref|YP_002468399.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471134|ref|ZP_05635133.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621748|gb|ACL29904.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624302|gb|ACL30457.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085823|gb|ADP65905.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086396|gb|ADP66477.1| flagellar motor switch protein FliN [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311086975|gb|ADP67055.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087552|gb|ADP67631.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 133

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           DVD    P  +  N+ L+ + D  D    I+N+PV + + LG+  ++I + +  SKG ++
Sbjct: 25  DVDKNLLPQENSKNSTLDNTIDVVDSKKTILNVPVNITVELGTSRIKIKDFLKFSKGSML 84

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++ + E ++I +N   IA GEI ++EE    +G+R+  I N+
Sbjct: 85  ILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125


>gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 148

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E   ++ +++++IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA
Sbjct: 58  EAPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 117

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
           +GE+ ++ +    FG+R+ +++
Sbjct: 118 QGEVVVVND---KFGIRLTDVV 136


>gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
 gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI]
          Length = 422

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             DLI++IP+K+ +ILG     I +++ L+ G V+ L   V E V++ +N   +A GE+ 
Sbjct: 338 RLDLILDIPLKVTVILGRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVV 397

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++ E+   FGVR+  I+  +
Sbjct: 398 VVNEN---FGVRITSIIGPE 414


>gi|163744332|ref|ZP_02151692.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
 gi|161381150|gb|EDQ05559.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
          Length = 154

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 57/94 (60%), Gaps = 6/94 (6%)

Query: 55  SSDSNNIL----EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           + DS N L    E      + ++N+ + +QI+LG   M IS L+ L++G ++ L++++G 
Sbjct: 57  TEDSRNALAPRPEAGGAGINAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGA 116

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            VD+ ++++ +A+G++  + ED    GV + +I+
Sbjct: 117 PVDLMVSDRLVARGDLVKVGED--RLGVSLTQIV 148


>gi|145298354|ref|YP_001141195.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851126|gb|ABO89447.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 121

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           PIS++            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +
Sbjct: 30  PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 82

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 83  DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 112


>gi|90406811|ref|ZP_01215003.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
 gi|90312048|gb|EAS40141.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
          Length = 129

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +ST + D IM+IPV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA 
Sbjct: 42  ESTVSIDSIMDIPVTISMEVGRSRINIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAH 101

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ ++ +    FG+R+ ++++
Sbjct: 102 GEVVVVND---KFGIRLTDVIS 120


>gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter
           carbinolicus DSM 2380]
 gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter
           carbinolicus DSM 2380]
          Length = 103

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
              +++IP+++ + +GS  M I +L+ L +G +I LDK  GE +D+ +N++ IA+GE  +
Sbjct: 21  LGFLLDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGEPLDLYVNSRLIARGEAVM 80

Query: 129 MEEDDTHFGVRVIEILNA 146
           +++    +G+R+ ++++ 
Sbjct: 81  VKD---RYGLRLTDVVSP 95


>gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
 gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
 gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
 gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
 gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
 gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
          Length = 144

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 42  IQKNDVDNISEPISSDS-NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           ++  D+ +   P++ D+  +  +    + +++++IPV++ + LG   + I  ++ L++G 
Sbjct: 32  VEGPDLSDQGGPLAGDAARSYGDVPVHDINMVLDIPVQLSVELGRTKVPIKYILQLAQGS 91

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +++
Sbjct: 92  VVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVV 132


>gi|94987083|ref|YP_595016.1| flagellar motor switch/type III secretory pathway protein [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731332|emb|CAJ54695.1| Flagellar motor switch/type III secretory pathway protein [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 164

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S    D I++IP+ +   LG   + I+ L+ L +G V+ L+K  GE +++ +N + +A
Sbjct: 76  EGSRRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVA 135

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE  ++ E    FGVR+ +I++
Sbjct: 136 RGEAVVINE---KFGVRLTDIIS 155


>gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 126

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
             L+ ++ +++ + LG     +  ++ +  G V+ LDK  GE+VD+ +N Q +A+GE+ +
Sbjct: 46  LGLLADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVV 105

Query: 129 MEEDDTHFGVRVIEILNAQ 147
           + E+   +G+R+ E++N +
Sbjct: 106 IGEN---YGIRITELINPE 121


>gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
 gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
          Length = 148

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E   ++ +++++IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA
Sbjct: 58  EAPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 117

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
           +GE+ ++ +    FG+R+ +++
Sbjct: 118 QGEVVVVND---KFGIRLTDVV 136


>gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
 gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
          Length = 124

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +   N +    +PV++ + L S  M +  L  + +GDVI LD+ VGE +DI +N   + +
Sbjct: 37  RKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGR 96

Query: 124 GEITIMEEDDTHFGVRVIEI 143
           GE+    E    +GVR++EI
Sbjct: 97  GEVV---EVAGRYGVRLLEI 113


>gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
 gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
          Length = 142

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++ ++I++IPV++ + LG   + I +++ L++G V+ LD   GE +D+ +N   IA+G
Sbjct: 53  AGNDINMILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQG 112

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++ +    FG+R+ +I+ 
Sbjct: 113 EVVVVND---KFGIRLTDIVT 130


>gi|15616703|ref|NP_239915.1| flagellar motor switch protein FliN [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386788|sp|P57183|FLIN_BUCAI RecName: Full=Flagellar motor switch protein FliN
 gi|25403545|pir||A84939 flagellar motor switch protein fliN [imported] - Buchnera sp.
           (strain APS)
 gi|10038766|dbj|BAB12801.1| flagellar motor switch protein fliN [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 133

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           DVD    P  +  N+ L+ + D  D    I+N+PV + + LG+  ++I + +  SKG ++
Sbjct: 25  DVDKNLLPQENSKNSTLDNTIDIVDSKKTILNVPVNITVELGTSRIKIKDFLKFSKGSML 84

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++ + E ++I +N   IA GEI ++EE    +G+R+  I N+
Sbjct: 85  ILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125


>gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
 gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
          Length = 128

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +   N +    +PV++ + L S  M +  L  + +GDVI LD+ VGE +DI +N   + +
Sbjct: 41  RKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGR 100

Query: 124 GEITIMEEDDTHFGVRVIEI 143
           GE+    E    +GVR++EI
Sbjct: 101 GEVV---EVAGRYGVRLLEI 117


>gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
 gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
          Length = 130

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 3/75 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++PV++ + +G   M +   + L  G ++ L++  GE VD+ +N   IA GE+ +++E
Sbjct: 29  LSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVIDE 88

Query: 132 DDTHFGVRVIEILNA 146
           +   FG+R+ ++L A
Sbjct: 89  E---FGLRITDVLGA 100


>gi|56460300|ref|YP_155581.1| flagellar motor switch protein [Idiomarina loihiensis L2TR]
 gi|56179310|gb|AAV82032.1| Flagellar motor switch [Idiomarina loihiensis L2TR]
          Length = 151

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S+   + E+     D I++IPV + + +G   + I NL+ L++G V+ L++  GE +D+ 
Sbjct: 56  SEDKPVTEEEKRKLDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERVAGEPLDVL 115

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 116 VNGTLIAHGEVVVVND---KFGIRLTDVIS 142


>gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans
           BC]
 gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           BC]
          Length = 151

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 7/97 (7%)

Query: 53  PISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           P+S +         D    + +++++IPV++ + LG   + I  ++ L++G V+ LD   
Sbjct: 47  PLSGEPARAFAGGGDAPAQDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALA 106

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           GE +D+ +N   IA+GE+ ++ +    FG+R+ +++ 
Sbjct: 107 GEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 140


>gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
 gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
          Length = 116

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DL+M++ V + + +G   + I +L+ L++G +++LD+ V E +D+ +N   IA+GE+ 
Sbjct: 33  DLDLLMDVQVTLSVEIGRTRLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 92

Query: 128 IMEEDDTHFGVRVIEILN 145
              E    FG+R+I++++
Sbjct: 93  ---ESAGQFGLRLIDVVS 107


>gi|330826723|ref|YP_004390026.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           K601]
 gi|329312095|gb|AEB86510.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           K601]
          Length = 151

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 7/97 (7%)

Query: 53  PISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           P+S +         D    + +++++IPV++ + LG   + I  ++ L++G V+ LD   
Sbjct: 47  PLSGEPARAFAGGGDAPVQDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALA 106

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           GE +D+ +N   IA+GE+ ++ +    FG+R+ +++ 
Sbjct: 107 GEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 140


>gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC3088]
 gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC3088]
          Length = 102

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +S+ N +++ NIPV + + +G   ++I +L+ L +G V+ L++  GE +D+ +NN  +A+
Sbjct: 16  ESSFNTEVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNNTVVAQ 75

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ ++ E    +GVR+  ++ ++
Sbjct: 76  GEVVLVNE---RYGVRLTNVIPSE 96


>gi|312884903|ref|ZP_07744593.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367380|gb|EFP94942.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 138

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 57/91 (62%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           +S+ +++ +      D I++IPV + + +G   + I NL+ L++G V+ L++  GES+D+
Sbjct: 42  TSEQSSLSDDERRKIDSILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERLAGESLDV 101

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 102 LVNGTLIAHGEVVVVND---KFGIRLTDVIS 129


>gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum
           ferrodiazotrophum]
          Length = 125

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D ++++P+ + + +G   M I +L+ L +G V+ LDK  GE +++ IN+Q +A+G++ 
Sbjct: 43  SLDYLLDVPLTISVRVGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVV 102

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++   +  +G+R+ +I++
Sbjct: 103 LV---NDKYGIRLTDIVS 117


>gi|119469994|ref|ZP_01612799.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
 gi|119446704|gb|EAW27977.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
          Length = 132

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +S + + I  +     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D
Sbjct: 35  LSDEKSEITGEEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLD 94

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 95  VLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123


>gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 119

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           I  P   D    LE   +N+  ++++ V  +  LGS  + +S ++   KG +I L K  G
Sbjct: 11  IQAPKQEDLARYLEGIINNYGGLLDMEVVFRSELGSTKIPLSEILQFEKGSIIDLQKPAG 70

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ESV+I IN + I KGE+ + E++     +RV EIL++
Sbjct: 71  ESVEIFINGRIIGKGEVMVYEKN---LAIRVNEILDS 104


>gi|109899344|ref|YP_662599.1| flagellar motor switch protein [Pseudoalteromonas atlantica T6c]
 gi|109701625|gb|ABG41545.1| flagellar motor switch protein FliN [Pseudoalteromonas atlantica
           T6c]
          Length = 131

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ +
Sbjct: 49  LDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 108

Query: 129 MEEDDTHFGVRVIEILN 145
           +   +  FG+R+ ++++
Sbjct: 109 V---NDKFGIRLTDVIS 122


>gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium
           SS3/4]
          Length = 445

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 57/91 (62%), Gaps = 5/91 (5%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           SS S N  E +  N +++M +P+++ + +G     + +++  ++G ++ LDK  GE  D+
Sbjct: 352 SSGSENGEESA--NQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLVVLDKMAGEQADL 409

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +N Q +A+G+I ++E+   +FG+R+ +I+ 
Sbjct: 410 YVNGQCVARGDIVVVED---NFGIRITDIVT 437


>gi|332305667|ref|YP_004433518.1| flagellar motor switch protein FliN [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172996|gb|AEE22250.1| flagellar motor switch protein FliN [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 131

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ +
Sbjct: 49  LDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 108

Query: 129 MEEDDTHFGVRVIEILN 145
           + +    FG+R+ ++++
Sbjct: 109 VND---KFGIRLTDVIS 122


>gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 111

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             DL+ ++ V + + LGS  + +  L+ L  G ++TLD+++ + VD+ +N + +A+ EI 
Sbjct: 35  RLDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIV 94

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
            +   D  FG+R++EI+  +
Sbjct: 95  AV---DDRFGIRIVEIVEER 111


>gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
           98-5491]
 gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
           98-5491]
          Length = 119

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           I  P   D    LE   +N+  ++++ V     LGS  + +  ++   KG +I L K  G
Sbjct: 11  IQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKGSIIDLQKPAG 70

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ESV+I IN + + KGE+ + E++     +RV EIL++
Sbjct: 71  ESVEIYINGRIVGKGEVMVYEKN---LAIRVNEILDS 104


>gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
 gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
          Length = 117

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DL+M++ V + + +G   + I +L+ L++G +++LD+ V E +D+ +N   IA+GE+ 
Sbjct: 34  DLDLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 93

Query: 128 IMEEDDTHFGVRVIEILN 145
              E    FG+R+I++++
Sbjct: 94  ---ESAGQFGLRLIDVVS 108


>gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
           43160]
 gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
           43160]
          Length = 249

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DL+ ++ +++ + +G   M +  L++L  G+V+ LD+      D+ +N   IA+GE+ 
Sbjct: 163 SLDLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVV 222

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++ED   FG+R+ EI+ 
Sbjct: 223 VVDED---FGLRISEIVT 237


>gi|241763647|ref|ZP_04761697.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
 gi|241367122|gb|EER61488.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
          Length = 145

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 58/94 (61%), Gaps = 5/94 (5%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
            EP+   S+    ++ ++ +++++IPV++ + LG   + I  ++ L++G V+ LD   GE
Sbjct: 45  GEPVRPFSSG--GETVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGE 102

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            +D+ +N   IA+GE+ ++ +    FG+R+ +++
Sbjct: 103 PMDVLVNGYLIAQGEVVVVND---KFGIRLTDVV 133


>gi|332531131|ref|ZP_08407045.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
 gi|332039416|gb|EGI75828.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
          Length = 122

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 35  TNNSEMLIQKNDVDNISEP--ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
            + +E L ++   D   EP  + S+S      + D  +++++IPV++ + LG   + I +
Sbjct: 2   ADWAEALQEQKPDDGAVEPGGVLSESARGDAPAAD-INMVLDIPVQLSVELGRTKVPIKH 60

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           ++ L +G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +++ 
Sbjct: 61  ILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 110


>gi|91200231|emb|CAJ73275.1| strong similar to flagellar motor switch protein FliN [Candidatus
           Kuenenia stuttgartiensis]
          Length = 120

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DLI+++ V + + LG   M I +++ LS+G ++ L+K  G  V++ +  + +A+GE+ 
Sbjct: 37  NLDLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPVELLVRGKLLARGEVV 96

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++EE    FG+++  I   Q
Sbjct: 97  VVEE---RFGLKITAICGPQ 113


>gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
 gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
          Length = 118

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++PV++ + L S  + +  L+ L +GD++ LD+ VGE +D+ +N   + +GE+    E +
Sbjct: 42  HLPVQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVV---EVN 98

Query: 134 THFGVRVIEI 143
             +GVR++E+
Sbjct: 99  GRYGVRLLEV 108


>gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
           3645]
 gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
           3645]
          Length = 212

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 51/75 (68%), Gaps = 3/75 (4%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           DL+ ++ + ++I LG   M + +++ ++KG V++LDK  G+ VDI +N + IA+GE+ ++
Sbjct: 135 DLVRDVELDVKIELGRTNMYLEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVL 194

Query: 130 EEDDTHFGVRVIEIL 144
            +   +F VR+ E++
Sbjct: 195 ND---NFCVRIAELI 206


>gi|78358624|ref|YP_390073.1| surface presentation of antigens (SPOA) protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221029|gb|ABB40378.1| Surface presentation of antigens (SPOA) protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 175

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             D I++IP+ +   LG   + I+ L+ L +G V+ L+K  GE ++I +N + +A+GE  
Sbjct: 92  ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAV 151

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+ +I++
Sbjct: 152 VINE---KFGVRLTDIIS 166


>gi|315127311|ref|YP_004069314.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
 gi|315015825|gb|ADT69163.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
          Length = 132

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ +
Sbjct: 50  LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 109

Query: 129 MEEDDTHFGVRVIEILN 145
           + +    FG+R+ ++++
Sbjct: 110 VND---KFGIRLTDVIS 123


>gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
           DG1235]
 gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
           DG1235]
          Length = 82

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           + T +  L+M++ VK+ + LGSC M +  ++ L  G VI L++   + V + IN++ IA 
Sbjct: 3   EETKDLGLLMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAY 62

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ ++E+   +FG+++ E+ N 
Sbjct: 63  GEVVVVED---NFGIKITEMANG 82


>gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
 gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY]
 gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
 gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY]
          Length = 149

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 51/82 (62%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    + +++++IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA
Sbjct: 59  EPQVHDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 118

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
           +GE+ ++ +    FG+R+ +++
Sbjct: 119 QGEVVVVND---KFGIRLTDVV 137


>gi|332533118|ref|ZP_08408987.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037400|gb|EGI73854.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 132

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ +
Sbjct: 50  LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 109

Query: 129 MEEDDTHFGVRVIEILN 145
           + +    FG+R+ ++++
Sbjct: 110 VND---KFGIRLTDVIS 123


>gi|303326579|ref|ZP_07357022.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
 gi|302864495|gb|EFL87426.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
          Length = 194

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             D I++IP+ +   LG   + I+ L+ L +G V+ L+K  GE +++ +N + +A+GE  
Sbjct: 111 ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAV 170

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+ +I++
Sbjct: 171 VINE---KFGVRLTDIIS 185


>gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus
           saanensis SP1PR4]
 gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus
           saanensis SP1PR4]
          Length = 100

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T   DL+M+I +   +  G+  MQ+  ++ LS GDVI LD+ V + VD+ I ++ +A+GE
Sbjct: 12  TPALDLLMDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVDLVIGDRIVARGE 71

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + ++   + +F + V E+   Q
Sbjct: 72  VVVL---NGYFALNVTEVAAPQ 90


>gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
           98-5489]
 gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
           98-5489]
          Length = 119

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           I  P   D    LE   +N+  ++++ V     LGS  + +  ++   KG +I L K  G
Sbjct: 11  IQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKGSIIDLQKPAG 70

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ESV+I IN + + KGE+ + E++     +RV E+L++
Sbjct: 71  ESVEIYINGRIVGKGEVMVYEKN---LAIRVNEVLDS 104


>gi|218887303|ref|YP_002436624.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758257|gb|ACL09156.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 180

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             D I++IP+ +   LG   + I+ L+ L +G V+ L+K  GE +++ +N + +A+GE  
Sbjct: 97  ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAV 156

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+ +I++
Sbjct: 157 VINE---KFGVRLTDIIS 171


>gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 93

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
            FDLIM++ V++ + LG   M++ +++ L++  V+ LD+   E +D+ +N + IA+GE+ 
Sbjct: 7   GFDLIMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGEVV 66

Query: 128 IMEEDDTHFGVRVIEILN 145
              +    FG+R++E++ 
Sbjct: 67  AQGD---RFGLRIVELVG 81


>gi|114797692|ref|YP_760111.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
           15444]
 gi|114737866|gb|ABI75991.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
           15444]
          Length = 89

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 57/94 (60%), Gaps = 9/94 (9%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           ++   N  LEK      ++M++PV++ ++LG   + +  L+ LS G+++ L+++  E VD
Sbjct: 1   MTEPKNPALEK------MLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVD 54

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           I ++ + +A+G++ +    D   GV + EI++++
Sbjct: 55  IYVSGRLVARGKLVV---TDGQLGVTLSEIIDSR 85


>gi|77359749|ref|YP_339324.1| flagellar motor switch protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874660|emb|CAI85881.1| flagellar biosynthesis; component of motor switch and energizing
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 132

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ +
Sbjct: 50  LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 109

Query: 129 MEEDDTHFGVRVIEILN 145
           + +    FG+R+ ++++
Sbjct: 110 VND---KFGIRLTDVIS 123


>gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
 gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
          Length = 155

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I+++PV++   LG   + I +L+ LS+G V+ LD   G+ +D+ IN   IA+GE+ ++ E
Sbjct: 74  ILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAGQPLDVLINGYLIAQGEVVVVNE 133

Query: 132 DDTHFGVRVIEILN 145
               +G+R+ +I+ 
Sbjct: 134 ---KYGIRLTDIVT 144


>gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
 gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
          Length = 119

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            +  IPV + + +GS  + +++LVN+ +G V+ LDK  GE +DI +N   I + E+ +  
Sbjct: 40  FLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAG 99

Query: 131 EDDTHFGVRVIEI 143
           +   ++G+RV+E+
Sbjct: 100 D---NYGLRVVEL 109


>gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
           5305]
 gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
           5305]
          Length = 227

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           N++  +     +++ ++ + ++I LG   + I  +V+L  G V+ LDK  G+ VDI +N 
Sbjct: 141 NSLGAQERAELEMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNG 200

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + IA+GE+ ++ ++   F VRV EIL  +
Sbjct: 201 RLIARGEVLVLNDN---FCVRVAEILTPK 226


>gi|220903654|ref|YP_002478966.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867953|gb|ACL48288.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 190

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IP+ +   LG   + I+ L+ L +G V+ L+K  GE +++ +N + +A+GE  +
Sbjct: 108 LDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVV 167

Query: 129 MEEDDTHFGVRVIEILN 145
           + E    FGVR+ +I++
Sbjct: 168 INE---KFGVRLTDIIS 181


>gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 572

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D  +LI+++P+ + ++LG     I +++ L+ G V+ L   V E V++ +N   +A+GE+
Sbjct: 486 DKINLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVNGTLVARGEV 545

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            ++ E+   FGVR+  ++  Q
Sbjct: 546 VVVNEN---FGVRITNVITPQ 563


>gi|160896095|ref|YP_001561677.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
 gi|160361679|gb|ABX33292.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
          Length = 143

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
            EP+   +    +   ++ +++++IPV++ + LG   + I  ++ L++G V+ LD   GE
Sbjct: 42  GEPVRPYAGGA-DVPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGE 100

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +D+ +N   IA+GE+ ++ +    FG+R+ +++ 
Sbjct: 101 PMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 132


>gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 125

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 58/99 (58%), Gaps = 4/99 (4%)

Query: 48  DNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D+IS P ++D       S   +      IPVK+ + + S  + +  L+ + +G VI LDK
Sbjct: 21  DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             GE++D+ +N + +AKGE+ ++   +  +G+R++++++
Sbjct: 81  LAGETLDVRVNGRLLAKGEVVVV---NGKYGLRLVDVID 116


>gi|46578463|ref|YP_009271.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603953|ref|YP_968353.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
 gi|46447874|gb|AAS94530.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564182|gb|ABM29926.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
 gi|311232391|gb|ADP85245.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris RCH1]
          Length = 170

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             D I++IP+ +   LG   + I+ L+ L +G V+ L+K  GE +++ +N + +A+GE  
Sbjct: 87  ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVARGEAV 146

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++ E    FGVR+ +I++
Sbjct: 147 VINE---KFGVRLTDIIS 161


>gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
           20603]
 gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
           20603]
          Length = 259

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 62/116 (53%), Gaps = 6/116 (5%)

Query: 33  SPTNNSEMLIQKNDVDNISEP-ISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQ 89
           SP  ++     +    + +EP I   +  ++   T  D   L+ ++ + + + +G   + 
Sbjct: 141 SPAASARTAQAEPSAPSPTEPEIRPFTPPMMGSGTGDDKLRLLYDVEMTLTVEIGRAKLP 200

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +  +++L+ G ++ LD+  G   D+ +N   +A+GE+ +++ED   +G+RV EI++
Sbjct: 201 VRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDED---YGLRVTEIID 253


>gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 194

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D++++IP+ + + +GS  M I  ++ L+   VI LDK + E +D+ +N   +AKGE+  
Sbjct: 107 LDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVLVAKGELYQ 166

Query: 129 MEEDDTHFGVRVIEILNAQ 147
           +   D +F +++ EIL  +
Sbjct: 167 V---DDNFAIKITEILTKE 182


>gi|85711034|ref|ZP_01042094.1| flagellar motor switch protein [Idiomarina baltica OS145]
 gi|85694947|gb|EAQ32885.1| flagellar motor switch protein [Idiomarina baltica OS145]
          Length = 140

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IPV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ +
Sbjct: 58  LDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVV 117

Query: 129 MEEDDTHFGVRVIEILN 145
           +   +  FG+R+ ++++
Sbjct: 118 V---NDKFGIRLTDVIS 131


>gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila]
          Length = 125

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 4/99 (4%)

Query: 48  DNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D+IS P ++D       S   +      IPVK+ + + S  + +  L+ + +G VI LDK
Sbjct: 21  DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             GE +D+ +N + +AKGE+ ++   +  +G+R++++++
Sbjct: 81  LAGEPLDVRVNGRLLAKGEVVVV---NGKYGLRLVDVID 116


>gi|188494288|ref|ZP_03001558.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|188489487|gb|EDU64590.1| flagellar motor switch protein FliN [Escherichia coli 53638]
          Length = 127

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 7/93 (7%)

Query: 55  SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+D+  ++ +  D+F     L+  IPV + + + S  + +++L+N+    VI LDK  GE
Sbjct: 28  SADAETLVTRLEDHFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 88  PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117


>gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
 gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
          Length = 96

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            D F LI +I V++ + LG   M++ +++ L +  VI LD+   E +D+ +N + IA+GE
Sbjct: 5   ADGFGLIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGE 64

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           +         F +RV+EI+ A
Sbjct: 65  VI---AQGNRFAIRVLEIVGA 82


>gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
           51599]
 gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
           51599]
          Length = 135

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + I++IPV++ + +G     I+N++ L+ G V+ LD + G  +D+ IN   IA+GE+ 
Sbjct: 50  DIERILDIPVQLSVEIGRTRTTINNVLQLAPGSVVELDAQAGAPMDVLINGYLIAQGEVV 109

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ +    FG+R+ +I+
Sbjct: 110 VVND---RFGIRLTDIV 123


>gi|306813324|ref|ZP_07447517.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli NC101]
 gi|305854087|gb|EFM54526.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli NC101]
          Length = 123

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)

Query: 55  SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+D+  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI LDK  GE
Sbjct: 24  SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 84  PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113


>gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
 gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
          Length = 102

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +  L+ N+ V M + +G+  + + +L+ L++G V+ LD+  G+ +DI +N   IAKGE+ 
Sbjct: 20  DLGLLANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVV 79

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++ E    FG+R  +I++ +
Sbjct: 80  VVGE---KFGIRFGDIVDPR 96


>gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
 gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
          Length = 250

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             +L+  + +++   LG   + +  L++LS G VI LD+  G   D+ +N + IA+GE+ 
Sbjct: 167 GLELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVV 226

Query: 128 IMEEDDTHFGVRVIEILN 145
           +++E+   FG+RV EI+ 
Sbjct: 227 VIDEN---FGIRVTEIIK 241


>gi|331671783|ref|ZP_08372579.1| flagellar switch protein [Escherichia coli TA280]
 gi|331070772|gb|EGI42131.1| flagellar switch protein [Escherichia coli TA280]
          Length = 127

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)

Query: 55  SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+D+  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI LDK  GE
Sbjct: 28  SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 88  PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117


>gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
 gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
          Length = 96

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NF L+ ++ VK+ + +GS  + +  L+ LS+  VI LD++  E +D+ +N   I +GE+ 
Sbjct: 17  NFRLLQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGTLIGRGEVV 76

Query: 128 IMEEDDTHFGVRVIEILN 145
            + +    FGVR+ E++N
Sbjct: 77  TVGD---RFGVRMTELVN 91


>gi|293403338|ref|ZP_06647429.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
 gi|298378949|ref|ZP_06988830.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
 gi|331640695|ref|ZP_08341842.1| flagellar switch protein [Escherichia coli H736]
 gi|331645398|ref|ZP_08346502.1| flagellar switch protein [Escherichia coli M605]
 gi|331666528|ref|ZP_08367402.1| flagellar switch protein [Escherichia coli TA271]
 gi|332281372|ref|ZP_08393785.1| lateral flagellar export/assembly protein [Shigella sp. D9]
 gi|291429191|gb|EFF02211.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
 gi|298280062|gb|EFI21566.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
 gi|331040069|gb|EGI12277.1| flagellar switch protein [Escherichia coli H736]
 gi|331045560|gb|EGI17686.1| flagellar switch protein [Escherichia coli M605]
 gi|331065752|gb|EGI37636.1| flagellar switch protein [Escherichia coli TA271]
 gi|332103724|gb|EGJ07070.1| lateral flagellar export/assembly protein [Shigella sp. D9]
          Length = 127

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)

Query: 55  SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+D+  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI LDK  GE
Sbjct: 28  SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 88  PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117


>gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
           11B]
 gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
           11B]
          Length = 123

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 8/104 (7%)

Query: 47  VDNISEPISSDS--NNILEKST---DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           V + SEP  S S  N+     T      +L+ N+ + +   LG   M +  L++L+ G V
Sbjct: 15  VGDSSEPAESVSPVNSAASAQTVRASRLELLQNVEMGVTAELGRTRMTVRELLSLAPGMV 74

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + L++  G  +D+ +N   IA+GE+ +++E+   FGVR+ EI+ 
Sbjct: 75  VELNRAAGSPIDLYVNGTLIARGEVVVIDEE---FGVRISEIVG 115


>gi|323975948|gb|EGB71042.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
          Length = 123

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)

Query: 55  SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+D+  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI LDK  GE
Sbjct: 24  SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 84  PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113


>gi|293408349|ref|ZP_06652188.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471527|gb|EFF14010.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 127

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)

Query: 55  SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+D+  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI LDK  GE
Sbjct: 28  SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 88  PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117


>gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
           EF01-2]
 gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
           EF01-2]
          Length = 163

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E+  ++ + +++IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA
Sbjct: 73  EQVINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 132

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
           +GE+ ++ +    FG+R+ +++
Sbjct: 133 QGEVVVVND---KFGIRLTDVV 151


>gi|170679793|ref|YP_001742353.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
           SMS-3-5]
 gi|300936106|ref|ZP_07151046.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           21-1]
 gi|170517511|gb|ACB15689.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
           SMS-3-5]
 gi|300458726|gb|EFK22219.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           21-1]
          Length = 123

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)

Query: 55  SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+D+  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI LDK  GE
Sbjct: 24  SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 84  PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113


>gi|259418090|ref|ZP_05742009.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
 gi|259346996|gb|EEW58810.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
          Length = 98

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           KS D  +  +++PV++ + +G     I +LVNL +  ++TLDK+V + VD+ + ++ +A+
Sbjct: 10  KSADAGNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVAR 69

Query: 124 GEITIMEEDDT-HFGVRVIEILNAQ 147
           G++  ME D      VR+ EI + Q
Sbjct: 70  GQLEEMEGDQAGQLAVRLTEIADLQ 94


>gi|170021378|ref|YP_001726332.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|218703507|ref|YP_002411026.1| lateral flagellar motor switch C ring FliN-like protein
           [Escherichia coli UMN026]
 gi|256020210|ref|ZP_05434075.1| Lateral flagellar export/assembly protein, Flagellar motor switch
           (C ring) (FliN-like) [Shigella sp. D9]
 gi|260853449|ref|YP_003227340.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli O26:H11 str. 11368]
 gi|260866395|ref|YP_003232797.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli O111:H- str. 11128]
 gi|300817290|ref|ZP_07097508.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           107-1]
 gi|300898059|ref|ZP_07116428.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           198-1]
 gi|301646792|ref|ZP_07246646.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           146-1]
 gi|307136839|ref|ZP_07496195.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli H736]
 gi|307315215|ref|ZP_07594794.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|59889763|emb|CAH19118.1| Lateral flagellar export/assembly protein (FliN-like) [Escherichia
           coli]
 gi|169756306|gb|ACA79005.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|218430604|emb|CAR11470.1| Lateral flagellar export/assembly protein, Flagellar motor switch
           (C ring) (FliN-like) [Escherichia coli UMN026]
 gi|257752098|dbj|BAI23600.1| predicted lateral flagellar motor switching and energizing
           component [Escherichia coli O26:H11 str. 11368]
 gi|257762751|dbj|BAI34246.1| predicted lateral flagellar motor switching and energizing
           component [Escherichia coli O111:H- str. 11128]
 gi|284920027|emb|CBG33083.1| lateral flagellar export/assembly protein (FliN-like) [Escherichia
           coli 042]
 gi|300358237|gb|EFJ74107.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           198-1]
 gi|300530266|gb|EFK51328.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           107-1]
 gi|301075027|gb|EFK89833.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           146-1]
 gi|306905396|gb|EFN35933.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|315059470|gb|ADT73797.1| Lateral flagellar C-ring switch protein [Escherichia coli W]
 gi|315616846|gb|EFU97463.1| flagellar motor switch family protein [Escherichia coli 3431]
 gi|323158012|gb|EFZ44113.1| surface presentation of antigens family protein [Escherichia coli
           EPECa14]
 gi|323178513|gb|EFZ64091.1| surface presentation of antigens family protein [Escherichia coli
           1180]
 gi|323181528|gb|EFZ66948.1| surface presentation of antigens family protein [Escherichia coli
           1357]
 gi|323191517|gb|EFZ76778.1| surface presentation of antigens family protein [Escherichia coli
           RN587/1]
 gi|323379972|gb|ADX52240.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           KO11]
          Length = 123

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)

Query: 55  SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+D+  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI LDK  GE
Sbjct: 24  SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 84  PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113


>gi|323171042|gb|EFZ56691.1| surface presentation of antigens family protein [Escherichia coli
           LT-68]
          Length = 123

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%)

Query: 55  SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+D+  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI LDK  GE
Sbjct: 24  SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 84  PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113


>gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
 gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
          Length = 84

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           M++ + + + LG   + I  ++ L +G +I L K  GE VD+ +N + IAKGE+ +++E 
Sbjct: 1   MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE- 59

Query: 133 DTHFGVRVIEILNA 146
              FGVRV +I+++
Sbjct: 60  --CFGVRVTDIVDS 71


>gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92]
 gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92]
          Length = 105

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           ++D +M+I V     LG+  + I+ L+    G VI L+K  GESV++ INN+   KGE+ 
Sbjct: 18  SYDELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVM 77

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           + E+   +  +R+ EIL+++
Sbjct: 78  VYEK---NLAIRINEILDSK 94


>gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 173

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D++++IP+ + + +GS  M I  ++ L+   VI LD+ + E +D+ +N   +AKGE+  
Sbjct: 86  LDILLDIPITITVEIGSKSMPIEEILKLAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQ 145

Query: 129 MEEDDTHFGVRVIEILNAQ 147
           +   D +F +++ EIL  +
Sbjct: 146 V---DDNFAIKITEILTKE 161


>gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
 gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
          Length = 149

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 67/117 (57%), Gaps = 8/117 (6%)

Query: 33  SPTNNSEML-IQKNDVDNISEPISSDSNNILEKSTDNF--DL--IMNIPVKMQIILGSCC 87
           +P N+ +++ + +  +   ++  SS  N   + +T +   DL  I++IP+ + +++G+  
Sbjct: 24  TPQNDEDLMKLWEEAIQAQAQTESSAENQQAQATTQDISKDLQRILDIPLSITVVIGTTV 83

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           + I  L+NL  G V+ LD+ +   V +  N + IAK E+ ++ E+   FG+R+ EI+
Sbjct: 84  ITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGEN---FGIRIAEII 137


>gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826]
 gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826]
          Length = 105

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           ++D +M+I V     LG+  + I+ L+    G VI L+K  GESV++ INN+   KGE+ 
Sbjct: 18  SYDELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVM 77

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           + E+   +  +R+ EIL+++
Sbjct: 78  VYEK---NLAIRINEILDSK 94


>gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
 gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
          Length = 123

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           +SEP++  +   L +   +F     IPV + + + S  + +  L+++  G VI LDK  G
Sbjct: 25  VSEPVAEQAPASLPQQDLSF--FGKIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAG 82

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           E +D+ +N    AK E+ +M   + ++G+R++E
Sbjct: 83  EPLDVKVNGALFAKAEVVVM---NGNYGLRIVE 112


>gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
           10542]
 gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
           10542]
          Length = 247

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           DN  L+ ++ + +   +G   + +  ++ L  G VI LD+  G   D+ +N + IA+GE+
Sbjct: 166 DNLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEV 225

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++ED   +G+R+ EI++
Sbjct: 226 VVIDED---YGLRITEIVD 241


>gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 192

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             +L++++P+ + + +GS  M I  +V LS   V+ LD+ + E +D+ +N   +AKGE+ 
Sbjct: 103 KLNLLLDLPITITVEIGSKVMTIEEIVKLSPSSVVDLDRFITEPIDLKVNGVLVAKGELY 162

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
            +E+    F +++ EIL  +
Sbjct: 163 QVED---QFAIKIKEILTKE 179


>gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
 gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 116

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            +  IPVK+ + +GS  + +++L  +S G V+ LDK  GE +DI +N   I + E+ +  
Sbjct: 38  FLRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSG 97

Query: 131 EDDTHFGVRVIEI 143
           +   ++G+RV+E+
Sbjct: 98  D---NYGLRVVEL 107


>gi|283784011|ref|YP_003363876.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
 gi|282947465|emb|CBG87012.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
          Length = 123

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 7/97 (7%)

Query: 51  SEPISSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           + P +S +  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI LDK
Sbjct: 20  AAPANSATEALVTRLEDRFSESMSLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDK 79

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
             GE +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 80  LAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113


>gi|116328051|ref|YP_797771.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331496|ref|YP_801214.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120795|gb|ABJ78838.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125185|gb|ABJ76456.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 174

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S P S+   +   +ST N +L+M++ + + + LG   M I ++  L++G V+ LDK VGE
Sbjct: 79  SAPRSATRQSASTQST-NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDKNVGE 137

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +DI  N   + +G++  M   D  +G+++ EI++
Sbjct: 138 DLDILANGHLVGRGKLVAM---DDFYGIQITEIVD 169


>gi|163784306|ref|ZP_02179216.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880424|gb|EDP74018.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 193

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +  +L+M+IP+++ + +G   + + +++ L+   V+ LDK + E VDI IN + +AKGE+
Sbjct: 105 EKLELLMDIPLEISVEVGGRDILLEDILKLNPNTVLELDKYINEPVDIKINGKLVAKGEL 164

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
              E    +FGV++  I+  Q
Sbjct: 165 YTAE---NNFGVKITSIVTVQ 182


>gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium
           capsulatum ATCC 51196]
          Length = 248

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N DL+++I V   +  GS  + I  L+    GDV+ LD+ + + VD+ + ++ +A+GE+ 
Sbjct: 162 NVDLLLDIEVDASLRFGSRELAIRELLETGPGDVLELDRHITDPVDLVVGDKIVARGEVV 221

Query: 128 IMEEDDTHFGVRVIEI 143
           ++   + +FG+RV E+
Sbjct: 222 LV---NGNFGLRVTEV 234


>gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740]
 gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
          Length = 117

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +  N+  P   + +N LE+   N+  ++++ V     LG+  + ++ ++   KG +I L 
Sbjct: 8   ETPNLINPRQQELSNYLEEVIRNYSGLLDMEVIFTAELGATKITLAEILKFEKGSIIDLQ 67

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  GESV+  +N + I KGE+ + E++     +R+ EIL++
Sbjct: 68  KPAGESVETFVNGRIIGKGEVMVYEKN---LAIRINEILDS 105


>gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
 gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
          Length = 113

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 54  ISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +  D  +I E ++  D   ++  IPV++ + +G   + +++L++   G  + L++  GE 
Sbjct: 17  LGDDPKSITETASPRDPMRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEP 76

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + I +N   +  GE+ +  E   H+G+R+IE+
Sbjct: 77  LVIKVNGTPVGLGEVVVSGE---HYGLRIIEL 105


>gi|51246521|ref|YP_066405.1| flagellar motor switch protein (FliN) [Desulfotalea psychrophila
           LSv54]
 gi|50877558|emb|CAG37398.1| probable flagellar motor switch protein (FliN) [Desulfotalea
           psychrophila LSv54]
          Length = 123

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 53/79 (67%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D + ++P+++ + +G   + I +L+N+ +G VI L+K  G+ +D+ +N++ IA+GE  
Sbjct: 39  SLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDLYVNSRLIARGEAV 98

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    FG+R+ ++++A
Sbjct: 99  MIGD---KFGIRLTDVVSA 114


>gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 101

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
            +D +++I V+    LG+  + +  L+ L  G VI L+K  GESV++ INN+   KGE+ 
Sbjct: 14  GYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVV 73

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           + E++     +R+ EIL+++
Sbjct: 74  VYEKN---LAIRINEILDSK 90


>gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 95

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           +DL+++  + + ++LGS  + I + ++L +GD+++LDK  G   DI +N++ I  G+I +
Sbjct: 8   YDLLVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRIIGTGDIIV 67

Query: 129 MEEDDTHFGVRV 140
           ++E      VRV
Sbjct: 68  IDE---KLAVRV 76


>gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
           SB155-2]
 gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
           SB155-2]
          Length = 83

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +F L+ +I +KM + LGS    I  +++L +GDVI L++   + +D+ +N +K+A GEI 
Sbjct: 10  DFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIV 69

Query: 128 IMEEDDTHFGVRVIEI 143
           ++   +  +GVR++++
Sbjct: 70  VI---NDKYGVRIVDL 82


>gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 101

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
            +D +++I V+    LG+  + +  L+ L  G VI L+K  GESV++ INN+   KGE+ 
Sbjct: 14  GYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVM 73

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           + E++     +R+ EIL+++
Sbjct: 74  VYEKN---LAIRINEILDSK 90


>gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
 gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
          Length = 118

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           ++D +M+I V     LG+  + +  L+ L  G VI L+K  GESV++ INN+   KGE+ 
Sbjct: 31  SYDELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVM 90

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           + E++     +R+ EIL+++
Sbjct: 91  VYEKN---LAIRINEILDSK 107


>gi|144901008|emb|CAM77872.1| Surface presentation of antigens (SPOA) protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 90

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 3/75 (4%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           + +  + V+   +LG+  + I+ L+ L +G V+ LD++V + VD+ +N + IA+ E+ ++
Sbjct: 14  EAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVVV 73

Query: 130 EEDDTHFGVRVIEIL 144
           E+   H  V V E+L
Sbjct: 74  ED---HLAVTVTEVL 85


>gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima
           DSM 10411]
 gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima
           DSM 10411]
          Length = 95

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           EK    F+   +IP+KM   L +  +++ +L+   +GD+I  +K  GE ++I I N+ + 
Sbjct: 6   EKIKKEFEKYFDIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIENKPLG 65

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
            GE+ ++   D  F +R+  I 
Sbjct: 66  MGEVIVL---DNKFAIRITNIF 84


>gi|283834475|ref|ZP_06354216.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
 gi|291070022|gb|EFE08131.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
          Length = 123

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 7/97 (7%)

Query: 51  SEPISSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           + P  S +  ++ +  D F     L+  IPV + + + S  + +++L+N+    VI +DK
Sbjct: 20  TPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVEVMLADLLNIDDDTVIEMDK 79

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
             GE +DI +NN  + K E+ ++ E    +G+RV+E 
Sbjct: 80  LAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113


>gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp.
           TM1040]
 gi|99039065|gb|ABF65677.1| Flagellar motor switch protein fliN [Ruegeria sp. TM1040]
          Length = 98

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+ +  +  +++PV++ + +G     I +LVNL +  ++TLDK+V + VD+ + ++ +A+
Sbjct: 10  KAAEASNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVAR 69

Query: 124 GEITIMEEDDT-HFGVRVIEILNAQ 147
           G++  ME D      VR+ EI + Q
Sbjct: 70  GQLEEMEGDQAGQLAVRLTEIADLQ 94


>gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
 gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
          Length = 293

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+ ++ +++ + LG   + +++++ L+ G +I L+K VGE ++I  N + IA+GE  
Sbjct: 209 NLELLADVELEIVVELGRRRLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGEAV 268

Query: 128 IMEEDDTHFGVRVIEILNA 146
           +++E    FGVR+  ++  
Sbjct: 269 VIDE---QFGVRITSLVTG 284


>gi|323186822|gb|EFZ72142.1| flagellar motor switch protein fliN domain protein [Escherichia
           coli RN587/1]
          Length = 102

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN
Sbjct: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102


>gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
           12198]
 gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
           12198]
          Length = 112

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           LE    +++ +++I       LGS  + I  ++N  +G VI L K  GESVD+ IN + +
Sbjct: 20  LEDMIQSYEGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVDVFINTRIV 79

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
            +GE+ + E++     +R+ EIL++
Sbjct: 80  GRGEVMVYEKN---LAIRLNEILDS 101


>gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 128

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I ++PV +   LG   + +  ++NLS G +I LD   GE V ++INNQK  +GE+ ++ +
Sbjct: 44  IEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVMVIND 103

Query: 132 DDTHFGVRVIEIL 144
           +   +G+R+  + 
Sbjct: 104 N---YGIRITSVF 113


>gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
 gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
          Length = 84

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D+++++ VK+ + LGS  + +  ++ LS G V+ L +   + V + +N+Q +A GE+ +
Sbjct: 6   LDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVV 65

Query: 129 MEEDDTHFGVRVIEILNAQ 147
           +E++   FG+++ E++ ++
Sbjct: 66  VEDN---FGIKITELVGSE 81


>gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
 gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
          Length = 104

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +++ I++I V     LG+  M +S L+ L  G VI L+K  GESV++ IN +   KGE+ 
Sbjct: 18  SYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVM 77

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           + E++     +R+ EIL+++
Sbjct: 78  VYEKN---LAIRINEILDSK 94


>gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
 gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
          Length = 118

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           ++D +M+I V     LG+  + +  L+ L  G VI L+K  GESV++ INN+   KGE+ 
Sbjct: 31  SYDELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVM 90

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           + E++     +R+ EIL+++
Sbjct: 91  VYEKN---LAIRINEILDSK 107


>gi|27904580|ref|NP_777706.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395830|sp|Q89AZ3|FLIN_BUCBP RecName: Full=Flagellar motor switch protein FliN
 gi|27903977|gb|AAO26811.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 134

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            IM++PV + I +G+  + I +L+ L    ++ LDK  G+ ++I +N   IA GE+ + E
Sbjct: 56  FIMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTE 115

Query: 131 EDDTHFGVRVIEILN 145
                +G+R+I I++
Sbjct: 116 ---NKYGIRIINIID 127


>gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
 gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
          Length = 104

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +++ I++I V     LG+  M +S L+ L  G VI L+K  GESV++ IN +   KGE+ 
Sbjct: 18  SYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVM 77

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           + E++     +R+ EIL+++
Sbjct: 78  VYEKN---LAIRINEILDSK 94


>gi|83594500|ref|YP_428252.1| surface presentation of antigens (SPOA) protein [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577414|gb|ABC23965.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
           rubrum ATCC 11170]
          Length = 93

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +  +PV++ ++LG   ++++ L+ L +G V+ L++++ E V+I  N+  +A+GE+ I + 
Sbjct: 15  VYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITDG 74

Query: 132 DDTHFGVRVIEILNA 146
           D    GV + E++ +
Sbjct: 75  D--KIGVTLTELVRS 87


>gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 172

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++ +++ I LG   M I +++ LS+G V+ LDK +GE +DI  N + + +G++ ++   D
Sbjct: 93  DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVL---D 149

Query: 134 THFGVRVIEILN 145
            ++GV++ +I++
Sbjct: 150 DYYGVQITQIVD 161


>gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P+  D   I +      D+ +++ V+    +GS    + ++++  +G V+ LDK+ G   
Sbjct: 227 PLQYDREQIGDDKKKLLDITLDVSVR----IGSTVCSVKDVLSFKEGQVLVLDKQAGSPA 282

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           D+  N + I +G++ +  +   HFG R+IEI+  +
Sbjct: 283 DVVANGELIGRGDVLVSGD---HFGARIIEIVGKR 314


>gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855]
 gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855]
          Length = 250

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +  F L+ ++ +++++ LG   + +++++ L+ G V+ L+K VGE + +  N + IA+GE
Sbjct: 165 SGTFKLLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGE 224

Query: 126 ITIMEEDDTHFGVRV 140
             +++E    FGVR+
Sbjct: 225 AVVIDE---QFGVRI 236


>gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
           BAA-613]
          Length = 320

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 18/134 (13%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNIS-----------EPISSDSNNILEKSTDNFDL 71
           D P Q+T   +P   +  +      + I+            PI      I E+     D+
Sbjct: 191 DMPCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKKLLDI 250

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
            +++ V+    LGS    + ++++L +G ++ LDK+ G   D+ +N + I +G++ +  +
Sbjct: 251 TLDVSVR----LGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGD 306

Query: 132 DDTHFGVRVIEILN 145
               FG R+IE++ 
Sbjct: 307 ---RFGARIIEVVG 317


>gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
 gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
          Length = 236

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 20/125 (16%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNIS-----------EPISSDSNNILEKSTDNFDLIMNI 75
           Q +  S P          ++ D +            E IS D +      +  F L+ ++
Sbjct: 107 QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGD------SGTFKLLADV 160

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            +++++ LG   + +++++ L+ G V+ L+K VGE + +  N + IA+GE  +++E    
Sbjct: 161 DLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDE---Q 217

Query: 136 FGVRV 140
           FGVR+
Sbjct: 218 FGVRI 222


>gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 178

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+M++ + + + LG   M I ++  L++G V+ LDK VGE +DI  N + + +G++ 
Sbjct: 99  NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLV 158

Query: 128 IMEEDDTHFGVRVIEILN 145
            M   D  +G+++ EI++
Sbjct: 159 AM---DDFYGIQITEIVD 173


>gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 178

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+M++ + + + LG   M I ++  L++G V+ LDK VGE +DI  N + + +G++ 
Sbjct: 99  NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLV 158

Query: 128 IMEEDDTHFGVRVIEILN 145
            M   D  +G+++ EI++
Sbjct: 159 AM---DDFYGIQITEIVD 173


>gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
           A6]
 gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
           A6]
          Length = 238

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
              LI N+ + + + +G   M + + + L  G VI LD+  G   D+ +N + IA GE+ 
Sbjct: 158 RLSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVV 217

Query: 128 IMEEDDTHFGVRVIEILN 145
           ++++D   + VR+  IL+
Sbjct: 218 VVDQD---YAVRITRILD 232


>gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 102

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           NI      +++ I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ IN +
Sbjct: 8   NIYHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              KGE+ + E++     +R+ EIL+++
Sbjct: 68  IFGKGEVMVYEKN---LAIRINEILDSK 92


>gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus
           cytotoxicus NVH 391-98]
          Length = 119

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E++  + D + +I +++ + LG   +Q+ ++ NL  GDV+ ++K +G  VD+ +++ K+ 
Sbjct: 22  EQAKAHIDTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEVEKNLGHKVDVYLSDIKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M   D  FG+ + EI
Sbjct: 82  IGEAIVM---DEQFGIIISEI 99


>gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
 gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
          Length = 269

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 59/95 (62%), Gaps = 3/95 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           +I + IS  S+ + ++     D++M++ +++++ +G   M + +++++  G ++ LD+  
Sbjct: 165 DIKDKISESSHELNKEIPSQLDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQLA 224

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            E +DI I ++KI +GE+ I+   D +FG+++  I
Sbjct: 225 NEPLDILIEDKKIGEGEVVIV---DGNFGIQITSI 256


>gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179]
 gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC
           49179]
          Length = 139

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P   +    LE+  +++  ++++ V     LGS  + +  ++   +G VI L K  GESV
Sbjct: 38  PREIELTTYLEELIEDYKGLLDMEVTFMAELGSTSIPLGEVLRFERGSVIDLQKPAGESV 97

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D  +N + I KGE+ + E+   +  +R+ E+L++
Sbjct: 98  DTFVNGRVIGKGEVMVYEK---NLAIRLNEVLDS 128


>gi|310816847|ref|YP_003964811.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
           Y25]
 gi|308755582|gb|ADO43511.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
           Y25]
          Length = 98

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            D+  +LE +      + N+P+++ I +G     +  L+ L +  V+ LD+R+ + V+I 
Sbjct: 6   PDAKPLLEGANPA---LWNVPIEVTIAVGRSRPSVRELLALEENAVLQLDRRIDDPVEIY 62

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEI 143
           I ++ IA+GE+   E++     VR+ E+
Sbjct: 63  IGDRLIARGELQESEDEPGQLAVRLTEV 90


>gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228]
 gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20]
 gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228]
 gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20]
          Length = 102

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            D + +L+   D    I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ 
Sbjct: 8   GDRHGLLQSYED----ILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELY 63

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           IN +   KGE+ + E++     +R+ EIL+++
Sbjct: 64  INKRIFGKGEVMVYEKN---LAIRINEILDSK 92


>gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           414]
          Length = 102

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           NI      +++ I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ IN +
Sbjct: 8   NIHHGLLQSYEDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              KGE+ + E++     +R+ EIL+++
Sbjct: 68  IFGKGEVMVYEKN---LAIRINEILDSK 92


>gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
           3776]
 gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
           3776]
          Length = 189

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D + ++ + ++I LG   + I  ++ L +G V+ LDK  G+ VDI +N + +A+GE+ +
Sbjct: 113 LDALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLV 172

Query: 129 MEEDDTHFGVRVIEILN 145
           +   + +F VR+ EIL 
Sbjct: 173 L---NDNFCVRIAEILT 186


>gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
 gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
          Length = 261

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           ST N +L++++ + + +  G   + +  +++L+ G V+ LD++V E V++ ++ + +A+G
Sbjct: 180 STSNLNLVLDVELNVTLRFGQRQLSLREVLDLTSGSVVELDRQVDEPVELVLDGKVVARG 239

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E  I+   D ++G+R+ ++L 
Sbjct: 240 EAVII---DGNYGMRITQVLQ 257


>gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
           aurantiaca DW4/3-1]
          Length = 441

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 19  SMHIDNP-LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
           S+ I  P  Q     SP         + D  + SE  S D+ N  E S    DL+ +IP+
Sbjct: 321 SIVIGEPAFQRAVPPSPEGEEAFTQPETDGSSESEGQSLDTMNKSEGS----DLLADIPL 376

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           ++ + L    +    +V+L  G V+ L +  GE V++++N + +A+GE+    E +   G
Sbjct: 377 QIAVELARVPVTADEVVSLRVGHVLELHRSPGEPVELSVNGKVVARGELV---EVEGQLG 433

Query: 138 VRVIEI 143
           VRV+ +
Sbjct: 434 VRVLSL 439


>gi|291532052|emb|CBK97637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
           siraeum 70/3]
          Length = 400

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 42/62 (67%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N  L+M++P+++ + +GS   +I +++  S+G +I L+++ G  VD+ +N   IA+G++
Sbjct: 339 ENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDV 398

Query: 127 TI 128
            +
Sbjct: 399 LL 400


>gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 150

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           +   ++PV + + LG+  + +  ++ L K  +I LDK  GE+  + +N + +A GE+ ++
Sbjct: 69  NFFESVPVTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVI 128

Query: 130 EEDDTHFGVRVIEI 143
              + +FG RV E+
Sbjct: 129 ---NDNFGFRVAEV 139


>gi|320354330|ref|YP_004195669.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
           2032]
 gi|320122832|gb|ADW18378.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
           2032]
          Length = 126

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T   + + ++P+++ + +G   + + +L+ + +G V+ LDK  GE +D+ +N + IA+GE
Sbjct: 41  TRELEFLFDVPLQVSVEVGRARILLKDLLQMGEGYVVELDKLAGEPLDLYVNARLIARGE 100

Query: 126 ITIMEEDDTHFGVRVIEILN 145
              + +    FG+++ E+++
Sbjct: 101 AVKVGD---KFGIKLTEVVS 117


>gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
 gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni]
 gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221]
 gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 102

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           NI      +++ I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ IN +
Sbjct: 8   NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              KGE+ + E++     +R+ EIL+++
Sbjct: 68  IFGKGEVMVYEKN---LAIRINEILDSK 92


>gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas
           ingrahamii 37]
 gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas
           ingrahamii 37]
          Length = 120

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           NDV++IS+   S S     K   +   + +IPV + + +G+  + +  L+ +    V+ L
Sbjct: 23  NDVNDISDAPPSSS----AKKAKSLSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLML 78

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            K  G+++DI +N +  A GE+ +    + H+GV++ +I+N
Sbjct: 79  TKENGKALDIKVNGKLFAYGEVVVA---NGHYGVKITDIVN 116


>gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 95

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   +++  L+N  KG ++   K  GE VD  +N + +A GEI ++   D  F VR+ E
Sbjct: 22  LGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVL---DERFAVRITE 78

Query: 143 ILNAQ 147
           IL  +
Sbjct: 79  ILEKE 83


>gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 105

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           NI      +++ I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ IN +
Sbjct: 11  NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 70

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              KGE+ + E++     +R+ EIL+++
Sbjct: 71  IFGKGEVMVYEKN---LAIRINEILDSK 95


>gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
 gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
          Length = 123

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV + + + S  + +  L+++  G VI LDK  GE +D+ +N    AK E+ +M   + 
Sbjct: 48  IPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVM---NG 104

Query: 135 HFGVRVIE 142
           ++G+R++E
Sbjct: 105 NYGLRIVE 112


>gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 124

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 77  VKMQII--LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +KM+I+  +G+  + +  L+ L +GDV+ LDK +G+ +D+ I+ ++ A GE+ ++ E   
Sbjct: 46  IKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINE--- 102

Query: 135 HFGVRV 140
            +GVR+
Sbjct: 103 MYGVRI 108


>gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
 gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
          Length = 238

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/91 (20%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +++ + + +     N  ++ ++ + +   +G   + +  +++L+ G V+ LD+  G   D
Sbjct: 141 VATPTTSQVPTPRANLRMLYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELDRTAGSPAD 200

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           + +N + +A+GE+ +++E    +G+RV EI+
Sbjct: 201 VLVNGRLVARGEVVVVDE---VYGIRVTEIV 228


>gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
 gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
          Length = 289

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           ++ N +L+ N+ +K+ + LG+  + + +++    G++I L++ V E ++I IN  KI +G
Sbjct: 202 TSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEG 261

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E  I+E     FG+++  I+N
Sbjct: 262 EAVIVE---GKFGLKIKRIIN 279


>gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630]
 gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-63q42]
 gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC
           43255]
 gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile]
          Length = 124

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E + +N   I+++ +++ +++G   M + +++NL KG +I LD    + V+I I+N+ +A
Sbjct: 36  EVNRNNIQRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLA 95

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
            G++ ++   D +FGV++  I++ +
Sbjct: 96  YGKVVVV---DLNFGVKITSIVSEE 117


>gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1]
 gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1]
          Length = 108

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V++Q++LG   + +  L+ + +G VI LD  V E V I  NN  +A+GEI I
Sbjct: 34  VEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVARGEIQI 85


>gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
 gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
          Length = 288

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           ++ N +L+ N+ +K+ + LG+  + + +++    G++I L++ V E ++I IN  KI +G
Sbjct: 201 TSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEG 260

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E  I+E     FG+++  I+N
Sbjct: 261 EAVIVE---GKFGLKIKRIIN 278


>gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio
           ammonificans HB-1]
 gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio
           ammonificans HB-1]
          Length = 83

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 43/64 (67%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T+  +   +I +K+ +++G   M  S ++ L +GD+ITLDK++ + +++T+N+Q+   GE
Sbjct: 8   TEKLERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLNDQEFGIGE 67

Query: 126 ITIM 129
           + ++
Sbjct: 68  LIVI 71


>gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
 gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
          Length = 279

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++ + +++ +GS  M + +++ +  G VI LD+   + ++I I ++KIA GE+ 
Sbjct: 196 NIGLIMDVRLPIRVRIGSKKMLLKDVLTMDIGSVIELDQLANDPLEILIGDKKIAYGEVV 255

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FGV++ EI
Sbjct: 256 IV---DGNFGVQITEI 268


>gi|146278776|ref|YP_001168935.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557017|gb|ABP71630.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 88

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +P+++ I +G     +  L+ L +  V+ LD+RV + VD+ + ++ I +GE+T +E D 
Sbjct: 11  QVPIEITISVGRARPPVRELLKLQRDAVLALDRRVDDPVDLYVGDRLIGRGELTELEGDQ 70

Query: 134 T-HFGVRVIEILN 145
                VR+ E+ N
Sbjct: 71  AGQLAVRLTEVAN 83


>gi|54307254|ref|YP_128274.1| putative flagellar motor switch protein [Photobacterium profundum
           SS9]
 gi|46911674|emb|CAG18472.1| putative flagellar motor switch protein [Photobacterium profundum
           SS9]
          Length = 117

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S+ + + I NIPV + + + S  + + +L+N+  G VI LDK  GE++D+ +N   +   
Sbjct: 30  SSQDMNFIRNIPVNLTLEVASTELMVGDLMNIGLGTVIELDKISGEAMDVKVNGTLLGHA 89

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ I+   +  +G+R++ +++
Sbjct: 90  EVVIV---NNKYGLRLVSVVD 107


>gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1]
 gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5]
 gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5]
 gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1]
          Length = 117

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P   +    LE+  +++  ++++ +     LGS  + +  ++   +G VI L K  GESV
Sbjct: 16  PRELELTTYLEELINDYKGLLDMEITFMAELGSTFIPLREVLRFERGSVIDLQKPAGESV 75

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D  +N + I KGE+ + E++     +R+ E+L++
Sbjct: 76  DTFVNGRVIGKGEVMVYEKN---LAIRLNEVLDS 106


>gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
 gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
          Length = 116

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S+++   I NIPV + + + S  +++ +L+N++ G VI LDK  GE +D+ +N   +   
Sbjct: 29  SSNDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVRVNGTLLGHA 88

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++   +  +G+R++ +++ +
Sbjct: 89  EVVVV---NNKYGLRLVNVVDEK 108


>gi|294678996|ref|YP_003579611.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
           1003]
 gi|294477816|gb|ADE87204.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
           1003]
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132
            +P+++ I +G     + +L+ + +  ++ LD+RV + V++ + ++ IA+GE+T ME D 
Sbjct: 13  QVPIEITISVGKARPLVRDLLRMKRDSILPLDRRVEDPVELYVGDKLIARGELTEMEGDS 72

Query: 133 DTHFGVRVIEILNAQ 147
           +    VR+ E+++ Q
Sbjct: 73  NGQLAVRLTEVVDLQ 87


>gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum
           kujiense DSM 16994]
          Length = 114

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  ++D ++++ V+    LG   + +  ++ L KG VI L K  GESV+  +N + I 
Sbjct: 22  ELSWMDYDGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPAGESVESYVNRRIIG 81

Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
           KGE+ + E++     +R+ E+L++
Sbjct: 82  KGEVMVYEKN---LAIRINEVLDS 102


>gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
 gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
          Length = 151

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +++ +  I  ++Q+ +G+  + +  L+   +  V+ LD+ +   VD+TI  + +A+G++ 
Sbjct: 69  DWNPLHQIKARLQVCVGAVSLSVGELLGAKEHQVLRLDREIDHPVDLTIEGKVVARGQLV 128

Query: 128 IMEEDDTHFGVRVIEI 143
            +   D HF VR+ E+
Sbjct: 129 AV---DGHFAVRITEL 141


>gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449]
 gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC
           51449]
          Length = 117

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           LE    N+  ++++       LGS  + +  ++   KG +I L K  GESV+I IN + I
Sbjct: 24  LEDMMKNYTGLLDMEALFNAELGSTKIPLGEILRFEKGSIIDLGKPAGESVEIFINGRVI 83

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
            KGE+ + E +     +R+ EIL++
Sbjct: 84  GKGEVMVYERN---LAIRINEILDS 105


>gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
 gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
          Length = 119

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH820]
 gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
 gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L]
 gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH820]
 gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
 gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 119

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDE---KFGIIISEI 99


>gi|260432139|ref|ZP_05786110.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415967|gb|EEX09226.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 95

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
           IP+++ + +G     I +L+N+ +  V+TLDKRV + VD+ + +Q +A+G +  ME E  
Sbjct: 18  IPIEVTVSVGRARPLIRDLLNMGENAVLTLDKRVEDPVDLYVGDQLVARGLLEEMEGEHA 77

Query: 134 THFGVRVIEI 143
               VR+ EI
Sbjct: 78  GQLAVRLTEI 87


>gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 127

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           LG   M +   ++L +G VI LD+  GE++D+ +N  K+A+GE+ ++
Sbjct: 58  LGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVI 104


>gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
 gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Bacillus anthracis str. A2012]
 gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0488]
 gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0442]
 gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0193]
 gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0389]
 gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0174]
 gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. CDC 684]
 gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0248]
 gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
 gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
 gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
 gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia
           94]
 gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. Ames]
 gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis
           str. Sterne]
 gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0488]
 gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0193]
 gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0442]
 gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0389]
 gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0174]
 gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. CDC 684]
 gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0248]
          Length = 119

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDE---KFGIIISEI 99


>gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0465]
 gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0465]
          Length = 119

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDE---KFGIIISEI 99


>gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
 gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
          Length = 111

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D   L+  IPV++ + +G+  + ++ L+N+ +G V+ LD+  GE + + +N   +   E+
Sbjct: 30  DPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEV 89

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +  E+   +G++VI++ N
Sbjct: 90  VVSGEN---YGLKVIDLEN 105


>gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
 gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
          Length = 226

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + N+ + + I LG   + I  ++ + +G V+ LDK  G+ VDI +N + IA+GE+ ++  
Sbjct: 153 LQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVL-- 210

Query: 132 DDTHFGVRVIEILNAQ 147
            + +F VRV EI++ +
Sbjct: 211 -NDNFCVRVAEIISPE 225


>gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB108]
 gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB102]
 gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
 gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB108]
 gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB102]
 gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
          Length = 119

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDE---KFGIIISEI 99


>gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
 gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
 gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 119

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|308273527|emb|CBX30129.1| hypothetical protein N47_D29380 [uncultured Desulfobacterium sp.]
          Length = 71

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 3/63 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   M I++L+ L +G +I L+K++G+ +DI I ++ IAKGE+ ++   D  FG+R+  
Sbjct: 3   LGQTRMLINDLLQLGQGSIIELNKQIGDPIDIFICDKLIAKGEVVVV---DDKFGIRLTN 59

Query: 143 ILN 145
           I++
Sbjct: 60  IIS 62


>gi|254511535|ref|ZP_05123602.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221535246|gb|EEE38234.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 95

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +P+++ + +G     I +L+N+ +  V+TLD+R+ + VD+ + +Q +A+G +  ME D  
Sbjct: 18  VPIEVTVSVGRARPLIRDLLNMGENAVLTLDRRIEDPVDLYVGDQLVARGLLEEMEGDQA 77

Query: 135 -HFGVRVIEILNAQ 147
               VR+ EI + Q
Sbjct: 78  GQLAVRLTEISDLQ 91


>gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
 gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN
 gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
          Length = 112

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV++++++G     +  L+ +  G VI +D+   + VDI +N + IAKGE+ I+   D
Sbjct: 41  DIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVII---D 97

Query: 134 THFGVRVIEILNAQ 147
              GV++ E++  Q
Sbjct: 98  GKIGVKIKEVVKEQ 111


>gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
 gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
          Length = 318

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 7/95 (7%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P+ +  ++I E+     D+ +++ V+   I G+ C  + +++ L KG ++TLDK+ G   
Sbjct: 230 PLDNQVDHIGEERKKLRDITLDVSVR---IGGTVC-SVKDILALQKGQILTLDKQAGSPA 285

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           D+ +N + I K ++ +    D  F  R+IEI+  +
Sbjct: 286 DVVVNGKLIGKSDVLVT---DDKFAARIIEIIGKR 317


>gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           TXDOH]
 gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           Bt4]
 gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
          Length = 115

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D   L+  IPV++ + +G+  + ++ L+N+ +G V+ LD+  GE + + +N   +   E+
Sbjct: 34  DPRHLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEV 93

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +  E+   +G+++I++ N
Sbjct: 94  VVSGEN---YGLKIIDLEN 109


>gi|260574385|ref|ZP_05842389.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
 gi|259023281|gb|EEW26573.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
          Length = 89

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +P+++ I +G    Q+ +L+ L +  V+ LD+RV + V++ + ++ IA+GE+  ++ D 
Sbjct: 12  QVPIEITISVGKARPQVRDLLKLQRDAVLPLDRRVDDPVELYVGDRLIARGELQELDGDQ 71

Query: 134 T-HFGVRVIEILN 145
                VR+ E+ N
Sbjct: 72  AGQLAVRLTEVAN 84


>gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
 gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
 gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1]
          Length = 119

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDE---KFGIIISEI 99


>gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
 gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
          Length = 119

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus
           NVH0597-99]
 gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus
           H3081.97]
 gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
 gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
 gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
 gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus
           NVH0597-99]
 gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus
           H3081.97]
 gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH187]
 gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1]
 gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
 gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
          Length = 119

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
 gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
          Length = 119

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|288960009|ref|YP_003450349.1| flagellar motor switch protein [Azospirillum sp. B510]
 gi|288912317|dbj|BAI73805.1| flagellar motor switch protein [Azospirillum sp. B510]
          Length = 100

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 41/60 (68%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I + PV++++++G+  +++ +L+ L +G V+ LD+ + +  D+ +    +A+GE+ I+++
Sbjct: 23  IGDAPVEIKVVIGTAMLRVRDLLKLGRGAVVELDRHLKDPTDVYVEGVLVARGEVAIIDD 82


>gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
 gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
          Length = 128

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           D   +  P   +  + LE    N++ ++++ V     LG+  + ++ ++   KG +I L 
Sbjct: 15  DKKQVHTPREIELASYLEDMMANYEGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQ 74

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  G SV+I +N++ + KGE+ + E +     +R+ EIL++
Sbjct: 75  KPAGASVEIFVNDRVVGKGEVMVYERN---LAIRINEILDS 112


>gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus
           G9241]
 gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus
           G9241]
          Length = 119

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 122

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IP+++ I +GS  + +  ++ L    ++ LD+ + E VDI IN + +AKG++  + E+ 
Sbjct: 44  DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIREN- 102

Query: 134 THFGVRVIEILNAQ 147
             +G+++ +I+  +
Sbjct: 103 --YGIKITQIITPE 114


>gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
 gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
          Length = 98

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +++ I++I V     LG+  M +  L+ L  G VI L+K  GESV++ +N +   KGE+ 
Sbjct: 11  SYEDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEVM 70

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           + E++     +R+ EIL+++
Sbjct: 71  VYEKN---LAIRINEILDSK 87


>gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 293

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 51  SEPISSDSNNIL-EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           S P S+  +++L ++S+ N  L+ +I +K+ + LG+    + +++    G++I L++ V 
Sbjct: 190 SLPTSNGIDSLLSDESSKNLKLLFDIKLKLSVRLGTKLFLLKDILKWDIGEIIELEQMVN 249

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           E +DI +N  KI +GE  I+E     FG+++  I N
Sbjct: 250 EPLDILVNGIKIGEGEAVIVE---GKFGLKIKNIGN 282


>gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia oklahomensis EO147]
 gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia oklahomensis C6786]
          Length = 115

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 53  PISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           P +SDS  + I     D   L+  IPV++ + +GS  + ++ L+ + +G V+ LD+  GE
Sbjct: 18  PEASDSPADAIERPRRDPMQLLAKIPVQLTLEVGSATITLAELMAIEEGSVLELDRLAGE 77

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            + I IN   +   E+ +      ++G++++++
Sbjct: 78  PLLIKINGTPVGHAEVVV---SGDNYGLKLLDL 107


>gi|229058413|ref|ZP_04196797.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
 gi|228719922|gb|EEL71512.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
          Length = 119

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    + D + +I +++ + LG   +Q+ ++  L  GDV+ ++K +G  VD+ +++ K+ 
Sbjct: 22  EAGKAHIDTVSDISIELGVKLGKSSIQLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH]
 gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH]
          Length = 270

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 58/94 (61%), Gaps = 4/94 (4%)

Query: 51  SEPISSDSNNI-LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           SE  S+ S  + L+    N +++++I +++++ +GS  M + +++ +  G ++ L++   
Sbjct: 168 SEGSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAK 227

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           E +DI I ++KI +GE+ I+   D +FG+++  I
Sbjct: 228 EPLDILIEDKKIGEGEVVIV---DGNFGIQITSI 258


>gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 127

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  L+ +IPV + + +    + +  L+NL  G V+ L+K  G+ VDI IN      GEI 
Sbjct: 49  NVSLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIV 108

Query: 128 IMEEDDTHFGVRVIEIL 144
                +  +GVR++ I+
Sbjct: 109 ---SKNGQYGVRLLSII 122


>gi|209964576|ref|YP_002297491.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|15077432|gb|AAK83160.1|AF332661_1 lateral flagellum motor switch protein FliNL [Rhodospirillum
           centenum]
 gi|209958042|gb|ACI98678.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 103

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 42/60 (70%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I +  V++ ++LG+  +++ +L+ L +G ++ LD+++ +  DI ++ + + +GE+TI+E+
Sbjct: 30  IYDTEVEVSVVLGTSTIRVRDLLKLGRGAIVELDRKIDDLSDIIVSGRMVGRGEVTIVED 89


>gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
          Length = 127

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  L+ +IPV + + +    + +  L+NL  G V+ L+K  G+ VDI IN      GEI 
Sbjct: 49  NISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIV 108

Query: 128 IMEEDDTHFGVRVIEIL 144
                +  +GVR++ I+
Sbjct: 109 ---SKNGQYGVRLLSII 122


>gi|153949693|ref|YP_001399619.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|152961188|gb|ABS48649.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
          Length = 137

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D +  SPT + + +I   ++ N  E  ++ ++    K      L   IPV + + + S  
Sbjct: 19  DESAISPTEHFDSMINSPEIINTPEKTATKTDEQKRK----MSLFSRIPVTLTLEVASVE 74

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +S L+ ++   VI LDK  GE +DI +N     + E+ ++ E    +G+R+I I
Sbjct: 75  LPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127


>gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
 gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
          Length = 119

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDE---KFGIIISEI 99


>gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
 gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
          Length = 467

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 16/97 (16%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           +D++S+P             D  DL+ ++P+++ + L    +    +V L  G V+ L++
Sbjct: 385 LDDVSKP-------------DGSDLLGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNR 431

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
             GE V++++N + +A+GE+  +E      GVR+I +
Sbjct: 432 GPGEPVELSVNGKVVARGELVELE---GQLGVRIITL 465


>gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
           13177]
          Length = 115

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D   L+  IPV++ + +G+  + ++ L+N+ +G V+ LD+  GE + + +N   +   E+
Sbjct: 34  DPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEV 93

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +  E+   +G+++I++ N
Sbjct: 94  VVSGEN---YGLKIIDLEN 109


>gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
 gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
          Length = 123

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T ++++ I + + +  S+    + +  LE+   ++  ++++ +     LGS  + +  ++
Sbjct: 4   TESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              KG VI L K  GESVD  +N + I KGE+ + E +     +R+ EIL++
Sbjct: 64  RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNEILDS 112


>gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-66c26]
 gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP
           107932]
 gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-76w55]
 gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-97b34]
 gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-37x79]
 gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
 gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-32g58]
 gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
          Length = 124

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E + +N   I+++ +++ +++G   M + +++NL KG +I L+    + V+I I+N+ +A
Sbjct: 36  EVNRNNIQRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLA 95

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
            G++ ++   D +FGV++  I++ +
Sbjct: 96  YGKVVVV---DLNFGVKITSIVSEE 117


>gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei 668]
 gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305]
 gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           DM98]
 gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia
           pseudomallei 1655]
 gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei]
 gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei 668]
 gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305]
 gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia
           pseudomallei 1655]
          Length = 115

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D   L+  IPV++ + +G+  + ++ L+N+ +G V+ LD+  GE + + +N   +   E+
Sbjct: 34  DPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEV 93

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +  E+   +G+++I++ N
Sbjct: 94  VVSGEN---YGLKIIDLEN 109


>gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
 gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
          Length = 133

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 56/92 (60%), Gaps = 5/92 (5%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++  + +EKS   F +++++P+ + + +GS  M +  ++ L+   V+ L++ + E VD+ 
Sbjct: 39  TEEEDRIEKS--KFSILLDVPLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLK 96

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +N + IAKGE+  ++    +FG+++  ++  +
Sbjct: 97  VNGKVIAKGELYTVK---NNFGLKITHVVTPE 125


>gi|114798836|ref|YP_758975.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
           ATCC 15444]
 gi|114739010|gb|ABI77135.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
           ATCC 15444]
          Length = 99

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I ++PV + + +G   + +  ++ L    VI L  +V + VD+ I+++ IAKGE  ++E 
Sbjct: 22  IYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDLFIDDKLIAKGE--LVET 79

Query: 132 DDTHFGVRVIEILN 145
           DD    V+++EI+ 
Sbjct: 80  DDGQIAVKIVEIIE 93


>gi|332559787|ref|ZP_08414109.1| FliN2 [Rhodobacter sphaeroides WS8N]
 gi|332277499|gb|EGJ22814.1| FliN2 [Rhodobacter sphaeroides WS8N]
          Length = 88

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME- 130
           +  +P+++ I +G     +  L+ L +  V+ LD+RV + V++ + ++ I +GE+T +E 
Sbjct: 9   LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDRLIGRGELTELEG 68

Query: 131 EDDTHFGVRVIEILN 145
           E      VR+ E+ N
Sbjct: 69  EQAGQLAVRLTEVAN 83


>gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36]
 gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36]
          Length = 122

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           NIP+ + + + S  + I +L+ LS G VI LDK   E +D+ +N Q +A  E+ ++   +
Sbjct: 46  NIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEVVVV---N 102

Query: 134 THFGVRVIEILN 145
             +GV++I++++
Sbjct: 103 GKYGVKLIDVVD 114


>gi|21672366|ref|NP_660433.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008469|sp|Q8KA38|FLIN_BUCAP RecName: Full=Flagellar motor switch protein FliN
 gi|21622971|gb|AAM67644.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 133

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 7/78 (8%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           FD+ MNI V+    LG   ++I +L+N SKG ++ L ++  + + +  NN+ IA GEI  
Sbjct: 55  FDIEMNITVE----LGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVF 110

Query: 129 MEEDDTHFGVRVIEILNA 146
               +  +G+R+I I N+
Sbjct: 111 ---SNNKYGIRIISINNS 125


>gi|229102363|ref|ZP_04233071.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
 gi|228681010|gb|EEL35179.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
          Length = 109

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 12  EVSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 71

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 72  IGEAIVMDE---KFGIIISEI 89


>gi|77464888|ref|YP_354392.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
 gi|126463730|ref|YP_001044844.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|77389306|gb|ABA80491.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
 gi|126105394|gb|ABN78072.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 88

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME- 130
           +  +P+++ I +G     +  L+ L +  V+ LD+RV + V++ + ++ I +GE+T +E 
Sbjct: 9   LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDKLIGRGELTELEG 68

Query: 131 EDDTHFGVRVIEILN 145
           E      VR+ E+ N
Sbjct: 69  EQAGQLAVRLTEVAN 83


>gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH1134]
 gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus
           G9842]
 gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           200]
 gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
 gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
 gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
 gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
 gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
 gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
 gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
 gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
 gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
 gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
 gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH1134]
 gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus
           B4264]
 gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus
           G9842]
 gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
 gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
 gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
 gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
 gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
 gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
 gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
 gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
 gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
 gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           200]
 gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 119

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDE---KFGIIISEI 99


>gi|238752882|ref|ZP_04614347.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
 gi|238708921|gb|EEQ01174.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
          Length = 112

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 52  EPISSDS-NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           EPI + S N+ L +      L   IPV + + + S  + +S L+ ++   VI LDK  GE
Sbjct: 13  EPIEAPSVNDSLHEQQRKISLFSRIPVTLTLEVASVDIPLSELMTVNSDSVIELDKLAGE 72

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            +DI +N     + E+ ++ E    +G+R++
Sbjct: 73  PLDIKVNGIMFGQAEVVVINE---KYGLRIV 100


>gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
 gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
          Length = 288

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N  LIM++ + +++ +G   M + +++N+  G VI L++   + +DI ++N  IA+GE+
Sbjct: 203 NNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHVIAQGEV 262

Query: 127 TIMEEDDTHFGVRVIEI 143
            I+   D +FGV++  I
Sbjct: 263 VIV---DGNFGVQITSI 276


>gi|254475007|ref|ZP_05088393.1| Surface presentation of antigens protein [Ruegeria sp. R11]
 gi|214029250|gb|EEB70085.1| Surface presentation of antigens protein [Ruegeria sp. R11]
          Length = 98

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
           G     I +LVNL +  ++TLDKRV + VD+ + ++ +A+G++  ME E      VR+ E
Sbjct: 30  GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89

Query: 143 ILNAQ 147
           I + Q
Sbjct: 90  IADLQ 94


>gi|75763361|ref|ZP_00743099.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228900346|ref|ZP_04064575.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           4222]
 gi|228938877|ref|ZP_04101477.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|229109220|ref|ZP_04238819.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
 gi|74489152|gb|EAO52630.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228674230|gb|EEL29475.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
 gi|228820726|gb|EEM66751.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228859233|gb|EEN03664.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           4222]
          Length = 109

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 12  EAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 71

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 72  IGEAIVMDE---KFGIIISEI 89


>gi|332162917|ref|YP_004299494.1| flagellar switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667147|gb|ADZ43791.1| Flagellar switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862338|emb|CBX72498.1| flagellar motor switch protein fliN [Yersinia enterocolitica
           W22703]
          Length = 129

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 13/111 (11%)

Query: 43  QKNDVDNISEPISSDS------NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
           Q+N+V   S PIS  S      +N L +      L   IPV + + + S  + +S L+++
Sbjct: 19  QENEV---SAPISVASVAAPVVDNSLHEQQRKISLFSRIPVTLTLEVASVDIPLSELMSV 75

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +   VI LDK  GE +DI IN     + E+ ++ E    +G+R+I   N+Q
Sbjct: 76  NNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVNE---KYGLRIIS-FNSQ 122


>gi|260767961|ref|ZP_05876895.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260615991|gb|EEX41176.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315179665|gb|ADT86579.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           furnissii NCTC 11218]
          Length = 122

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
              NIPV + + + S  + +  L+   +G VI LDK  GE +D+ +N   +   E+ ++ 
Sbjct: 43  FFRNIPVTVTLEVASKAIALGELMKAGEGSVIELDKLNGEPLDVKVNGALLGHAEVVVVN 102

Query: 131 EDDTHFGVRVIEILNA 146
           +    +G+R+I++L++
Sbjct: 103 D---KYGLRLIDVLDS 115


>gi|22127343|ref|NP_670766.1| flagellar switch protein [Yersinia pestis KIM 10]
 gi|45442781|ref|NP_994320.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597652|ref|YP_071843.1| flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
 gi|108809074|ref|YP_652990.1| flagellar switch protein [Yersinia pestis Antiqua]
 gi|108810733|ref|YP_646500.1| flagellar switch protein [Yersinia pestis Nepal516]
 gi|145597802|ref|YP_001161878.1| flagellar switch protein [Yersinia pestis Pestoides F]
 gi|150260264|ref|ZP_01916992.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
           CA88-4125]
 gi|165925127|ref|ZP_02220959.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939068|ref|ZP_02227620.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008730|ref|ZP_02229628.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212179|ref|ZP_02238214.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399118|ref|ZP_02304642.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419195|ref|ZP_02310948.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425214|ref|ZP_02316967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466356|ref|ZP_02331060.1| flagellar switch protein [Yersinia pestis FV-1]
 gi|170022956|ref|YP_001719461.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186896786|ref|YP_001873898.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927897|ref|YP_002345772.1| flagellar switch protein [Yersinia pestis CO92]
 gi|229837393|ref|ZP_04457556.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
 gi|229840606|ref|ZP_04460765.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842843|ref|ZP_04462995.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900930|ref|ZP_04516054.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
 gi|270487689|ref|ZP_06204763.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|294502774|ref|YP_003566836.1| flagellar switch protein [Yersinia pestis Z176003]
 gi|21960426|gb|AAM87017.1|AE013950_2 hypothetical [Yersinia pestis KIM 10]
 gi|45437647|gb|AAS63197.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590934|emb|CAH22590.1| Flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
 gi|108774381|gb|ABG16900.1| flagellar switch protein [Yersinia pestis Nepal516]
 gi|108780987|gb|ABG15045.1| flagellar switch protein [Yersinia pestis Antiqua]
 gi|115346508|emb|CAL19384.1| flagellar switch protein [Yersinia pestis CO92]
 gi|145209498|gb|ABP38905.1| flagellar switch protein [Yersinia pestis Pestoides F]
 gi|149289672|gb|EDM39749.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
           CA88-4125]
 gi|165913024|gb|EDR31649.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923327|gb|EDR40478.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992069|gb|EDR44370.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206925|gb|EDR51405.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963189|gb|EDR59210.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051622|gb|EDR63030.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055977|gb|EDR65758.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749490|gb|ACA67008.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186699812|gb|ACC90441.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682269|gb|EEO78361.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
 gi|229690110|gb|EEO82167.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696972|gb|EEO87019.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705516|gb|EEO91526.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
 gi|262360806|gb|ACY57527.1| flagellar switch protein [Yersinia pestis D106004]
 gi|262364751|gb|ACY61308.1| flagellar switch protein [Yersinia pestis D182038]
 gi|270336193|gb|EFA46970.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|294353233|gb|ADE63574.1| flagellar switch protein [Yersinia pestis Z176003]
 gi|320016726|gb|ADW00298.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D +  SPT + + +I   ++ N  E  ++ ++    K      L   IPV + + + S  
Sbjct: 19  DESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRK----MSLFSRIPVTLTLEVASVE 74

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +S L+ ++   VI LDK  GE +DI +N     + E+ ++ E    +G+R+I I
Sbjct: 75  IPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127


>gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
 gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
          Length = 119

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|162419818|ref|YP_001604860.1| flagellar switch protein [Yersinia pestis Angola]
 gi|162352633|gb|ABX86581.1| flagellar motor switch protein FliN [Yersinia pestis Angola]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D +  SPT + + +I   ++ N  E  ++ ++    K      L   IPV + + + S  
Sbjct: 19  DESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRK----MSLFSRIPVTLTLEVASVE 74

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +S L+ ++   VI LDK  GE +DI +N     + E+ ++ E    +G+R+I I
Sbjct: 75  IPLSELLTVNNDSVIELDKLAGEPLDIQVNGIMFGQAEVVVINE---KYGLRIINI 127


>gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 119

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ +++ K+ 
Sbjct: 22  EASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDE---KFGIIISEI 99


>gi|159045806|ref|YP_001534600.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
 gi|157913566|gb|ABV94999.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
          Length = 89

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           ++ +P+ + + +G     +  L+ L K  V+ LDKR+ + V++ +    IA+G   ++EE
Sbjct: 12  LVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARG---VLEE 68

Query: 132 D-DTH-FGVRVIEILNAQ 147
           D D+H   VR+ E+++ +
Sbjct: 69  DADSHRLSVRLTEVISPE 86


>gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
 gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
          Length = 104

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  ++  I+++ V+    LG   + ++ ++ L KG +I L K  GESV+  +N + + 
Sbjct: 12  ELSWMDYSGILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVESYVNGRILG 71

Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
           KGE+ + E+   +  +R+ E+L++
Sbjct: 72  KGEVMVYEK---NLAIRINEVLDS 92


>gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae
           12198]
 gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae
           12198]
          Length = 279

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 55/89 (61%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S+   N+ ++   N  +++++ + +++ +G   M + ++ ++  G VI L++   E ++I
Sbjct: 182 SAPGQNLSQEEMKNIGMLLDVKLNVKVRIGQKRMLLKDVTSMDIGSVIELNQLANEPLEI 241

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            I+++ IAKGE+ I+   D +FG++V EI
Sbjct: 242 LIDDKVIAKGEVVIV---DGNFGIQVTEI 267


>gi|315498407|ref|YP_004087211.1| surface presentation of antigens (spoa) protein [Asticcacaulis
           excentricus CB 48]
 gi|315416419|gb|ADU13060.1| surface presentation of antigens (SPOA) protein [Asticcacaulis
           excentricus CB 48]
          Length = 93

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           ++ ++LG   + +  L+ + +G VI LD R  + V I  NN  +A+GEI I EE
Sbjct: 20  EISVLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEE 73


>gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
 gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
          Length = 101

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           +EK   ++  +++  V  +  +G   M I  +++L +G +I L K  GES ++ +N + I
Sbjct: 8   VEKLIPDYSNLIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVYVNGRII 67

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
            KGE+ + E+   +  +R+ E+L+A
Sbjct: 68  GKGEVMVYEK---NLAIRLNEVLDA 89


>gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
 gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
 gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
 gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
          Length = 119

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ +++ K+ 
Sbjct: 22  EAEKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDIKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE T+M+E    FG+ + EI
Sbjct: 82  IGEATVMDEK---FGIIISEI 99


>gi|152975143|ref|YP_001374660.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023895|gb|ABS21665.1| CheC, inhibitor of MCP methylation [Bacillus cytotoxicus NVH
           391-98]
          Length = 554

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 9/104 (8%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLI-----MNIPVKMQIILGSCCMQISNLVNL 96
           I++ +V+ I EP + +   +LE  T   + I      N+ + ++ + GS    I ++++L
Sbjct: 451 IKEENVEEIPEP-AVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILSL 509

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
            + D + LD+ V E + I +NN  +A GE+  +   D  FGV+V
Sbjct: 510 HENDAVVLDEEVDEPIRIYVNNVLVAYGELVNV---DGFFGVKV 550


>gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
 gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
 gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
 gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
          Length = 95

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 44/70 (62%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           +E S   +DL+++  + + ++LGS  + +   + L++GD+I+L K  G   +I +N++ I
Sbjct: 1   MEISERVYDLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRII 60

Query: 122 AKGEITIMEE 131
             G+I +++E
Sbjct: 61  GTGDIIVIDE 70


>gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum
           JL354]
          Length = 118

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D + LI  I V++ + LG   + +  ++ L +  ++ LD+   E +DI +N + IA+GE+
Sbjct: 6   DGYGLIQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEV 65

Query: 127 TIMEEDDTHFGVRVIEILNA 146
                    F +R++E+  A
Sbjct: 66  V---AQGNRFAIRILELSGA 82


>gi|207109202|ref|ZP_03243364.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 78

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 7   LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 63

Query: 143 ILNA 146
           IL++
Sbjct: 64  ILDS 67


>gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
           11218]
          Length = 128

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LI +IPV++ + +    + +  ++++    VI LDK+ GE VDI IN      G I 
Sbjct: 49  NMGLIRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNII 108

Query: 128 IMEEDDTHFGVRVIEILN 145
           I    D  +GV+V+ ++N
Sbjct: 109 I---QDGKYGVQVLALVN 123


>gi|163738044|ref|ZP_02145460.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
 gi|163742560|ref|ZP_02149946.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
           2.10]
 gi|161384145|gb|EDQ08528.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
           2.10]
 gi|161388660|gb|EDQ13013.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
          Length = 98

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
           G     I +LVNL +  ++TLDKRV + VD+ + ++ +A+G++  ME E      VR+ E
Sbjct: 30  GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89

Query: 143 ILNAQ 147
           I + Q
Sbjct: 90  IADLQ 94


>gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180]
 gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908]
 gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24]
 gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|229132592|ref|ZP_04261440.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
 gi|228650824|gb|EEL06811.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
          Length = 119

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    + D + +I +++ + LG   +++ ++  L  GDV+ ++K +G  VD+ +++ K+ 
Sbjct: 22  EAGKAHIDTVSDISIELGVKLGKSSIKLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99]
 gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27]
 gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12]
 gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
 gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38]
 gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
 gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
 gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27]
 gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12]
 gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
 gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38]
 gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
 gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|56695120|ref|YP_165467.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
 gi|56676857|gb|AAV93523.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
          Length = 109

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI-TIMEED 132
           ++P+++ + +G     I +L+ L +  V+TLDKRV + VD+ + ++ +A+G++  +  E 
Sbjct: 31  SVPIEITVSVGRARPLIRDLIGLGENAVLTLDKRVEDPVDLYVGDRLVARGQLEELTGEQ 90

Query: 133 DTHFGVRVIEI 143
                VR+ EI
Sbjct: 91  AGQLAVRLTEI 101


>gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
 gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
          Length = 119

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    + D + +I + + + LG   + + ++  L  GDV+ ++K +G  VD+ ++N K+ 
Sbjct: 22  EAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDE---KFGIIISEI 99


>gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818]
 gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
           18818]
 gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
           18818]
          Length = 116

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           LE    N+  ++++ V     LG+  + +  ++   KG +I L K  GES++  IN + I
Sbjct: 24  LEDMMKNYTGLLDMEVIFNAELGNTKIALGEILRFEKGSIIDLGKPAGESIETFINGRVI 83

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
            KGE+ + E +     +R+ EIL++
Sbjct: 84  GKGEVMVYERN---LAIRINEILDS 105


>gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
 gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
 gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
 gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20]
 gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464]
 gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16]
 gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30]
 gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57]
 gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470]
 gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470]
 gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51]
 gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A]
 gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|329850252|ref|ZP_08265097.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
           C19]
 gi|328840567|gb|EGF90138.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
           C19]
          Length = 71

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           ++LG   + +  L+ + +G VI LD R  + V I  NN  +A+GEI I EE
Sbjct: 1   MLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEE 51


>gi|254418697|ref|ZP_05032421.1| Surface presentation of antigens protein, putative [Brevundimonas
           sp. BAL3]
 gi|196184874|gb|EDX79850.1| Surface presentation of antigens protein, putative [Brevundimonas
           sp. BAL3]
          Length = 83

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V++ ++LG   + +S L+ + +G VI LD   G+ V I  NN  +A+GEI I
Sbjct: 9   VEISVVLGRMVLPMSQLLRMGRGAVIPLDASEGDEVWILANNHPVARGEIEI 60


>gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1]
 gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695]
 gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum
           CMR15]
          Length = 132

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
            ++ + +G+  + +  L+      V+ LD +V + VD+ +  + +A+G++  ++E   HF
Sbjct: 63  AQLTVCVGTATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDE---HF 119

Query: 137 GVRVIEI 143
           GVR+ E+
Sbjct: 120 GVRITEL 126


>gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
 gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 322

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           I N PV+++ ILG   +    L++L  GD++TL +R+ E VD+ +      KG++
Sbjct: 253 IKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVEGVPKFKGKL 307


>gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E +     +R+ E
Sbjct: 52  LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108

Query: 143 ILNA 146
           IL++
Sbjct: 109 ILDS 112


>gi|260779322|ref|ZP_05888214.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605486|gb|EEX31781.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 122

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +     NIPV + + + S  + + +L+   +G VI LDK  GE +D+ +N   +   E+ 
Sbjct: 40  DLSFFKNIPVTVTLEVASKDIALGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVV 99

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ E    +G+R+I+I+++
Sbjct: 100 VVNE---KYGLRLIDIVDS 115


>gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
 gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
 gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
 gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 20/122 (16%)

Query: 39  EMLIQKNDVDNISEPISS----------------DSNNILEKS-TDNFDLIMNIPVKMQI 81
           E   +K  + NIS+PI                  D ++ LE++   N +++++I + +++
Sbjct: 162 ETFKKKEVIKNISKPIQGPAMPNIPVVQHNNDHVDGDHPLEQTEIRNINMLLDIKLNVRV 221

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            +G   M + ++V++  G V+ L++ V + ++I ++++ IAKGE+ I+   D +FG+++ 
Sbjct: 222 RIGQKKMILKDVVSMDIGSVVELNQMVNDPLEILVDDKVIAKGEVVIV---DGNFGIQIT 278

Query: 142 EI 143
           EI
Sbjct: 279 EI 280


>gi|327478783|gb|AEA82093.1| flagellar motor switch protein FliN [Pseudomonas stutzeri DSM 4166]
          Length = 123

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV + + + S  + +  L+      VI LDK  GE +D+ +N    AK E+ +M   + 
Sbjct: 48  IPVNVTLEVASAEISLKELMECDTSSVIVLDKLAGEPLDVKVNGTLFAKAEVVVM---NG 104

Query: 135 HFGVRVIEI 143
           ++G+R++E+
Sbjct: 105 NYGLRIVEL 113


>gi|149203109|ref|ZP_01880080.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
           TM1035]
 gi|149143655|gb|EDM31691.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
           TM1035]
          Length = 98

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132
           ++P+++ + +G     I +L+ L K  V+ LD+RV ++V++ +  + IA+G++  +  D 
Sbjct: 21  SVPIEITVSVGKARPLIRDLLKLGKNAVLVLDRRVDDAVELYVGERLIARGQLEELAGDQ 80

Query: 133 DTHFGVRVIEILNAQ 147
                VRV E+ N Q
Sbjct: 81  QGQIAVRVTEVANLQ 95


>gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
          Length = 502

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPVK++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D
Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKG---ILVRVD 490

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 491 DHFGIQMTELVR 502


>gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 502

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPVK++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D
Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKG---ILVRVD 490

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 491 DHFGIQMTELVR 502


>gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
 gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
 gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis
           KBAB4]
 gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
 gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
          Length = 119

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD+ +++ K+ 
Sbjct: 22  EAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE  +M+E    FG+ + EI
Sbjct: 82  IGEAIVMDEK---FGIIISEI 99


>gi|149189861|ref|ZP_01868141.1| flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148836347|gb|EDL53304.1| flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 122

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +S  +     NIPV + + + S  + + +L++  +G +I LDK  GE +D+ +N   +  
Sbjct: 36  QSERDISFFKNIPVTVTLEVASKEVALGDLMSAGEGSIIELDKLNGEPLDVKVNGSLMGH 95

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
            E+ ++ E    +G+R+I+++++
Sbjct: 96  AEVVVVNE---KYGLRLIDVVDS 115


>gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J1-175]
 gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262]
 gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816]
          Length = 99

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M   D
Sbjct: 32  NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88

Query: 134 THFGVRVIEI 143
            +FG+ + EI
Sbjct: 89  ENFGIVISEI 98


>gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes Clip81459]
 gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J1-208]
 gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes
           L99]
 gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
 gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
 gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
 gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 100

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M   D
Sbjct: 33  NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 89

Query: 134 THFGVRVIEI 143
            +FG+ + EI
Sbjct: 90  ENFGIVISEI 99


>gi|313673294|ref|YP_004051405.1| surface presentation of antigens (spoa) protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940050|gb|ADR19242.1| surface presentation of antigens (SPOA) protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 94

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D+IM++ V+    LG     I  L++  +G +I L+K  GE VD+ +NN+ +A GEI ++
Sbjct: 12  DVIMDVTVE----LGRKLCTIGELLSWEQGTIIKLNKTSGEVVDMLVNNKPLAIGEIMVL 67

Query: 130 EEDDTHFGVRVIEI 143
           +E    F  R+ +I
Sbjct: 68  DE---KFAFRLSDI 78


>gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces
           limnophilus DSM 3776]
 gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces
           limnophilus DSM 3776]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V++ + L    M ++ L+ LS G ++T  K   + +DI I N++ A+GE   + E   HF
Sbjct: 320 VQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQGEAVKIGE---HF 376

Query: 137 GVRV 140
           GV+V
Sbjct: 377 GVKV 380


>gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland
           1988]
 gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
 gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161]
 gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
 gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
 gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e]
 gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
          Length = 99

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M   D
Sbjct: 32  NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88

Query: 134 THFGVRVIEI 143
            +FG+ + EI
Sbjct: 89  ENFGIVISEI 98


>gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J2-064]
          Length = 99

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M   D
Sbjct: 32  NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88

Query: 134 THFGVRVIEI 143
            +FG+ + EI
Sbjct: 89  ENFGIVISEI 98


>gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
 gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
          Length = 99

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M  
Sbjct: 30  VENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM-- 87

Query: 132 DDTHFGVRVIEI 143
            D +FG+ + EI
Sbjct: 88  -DENFGIVISEI 98


>gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
           DSM 574]
          Length = 131

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           LG   +++  ++NL  G VI L+K  G++++I  N++K AKGE+ ++ +    F VR+
Sbjct: 60  LGETTLKLREVLNLDVGSVIDLNKSAGDAINIYFNDRKAAKGEVIVVNDS---FAVRI 114


>gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
          Length = 100

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M   D
Sbjct: 33  NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 89

Query: 134 THFGVRVIEI 143
            +FG+ + EI
Sbjct: 90  ENFGIVISEI 99


>gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 99

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M   D
Sbjct: 32  NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88

Query: 134 THFGVRVIEI 143
            +FG+ + EI
Sbjct: 89  ENFGIVISEI 98


>gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
 gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
          Length = 165

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IP+ + + +G   M +  L++L  G+ I LD R    +D+ +N  ++AKGE+  + E  
Sbjct: 98  DIPLSIILEVGRLKMSMQTLMDLQPGNTIELDIRPESGIDLVVNGSRVAKGELLQVGE-- 155

Query: 134 THFGVRVIEI 143
            + G+R++E+
Sbjct: 156 -NLGIRILEL 164


>gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 99

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M  
Sbjct: 30  VENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM-- 87

Query: 132 DDTHFGVRVIEI 143
            D +FG+ + EI
Sbjct: 88  -DENFGIVISEI 98


>gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
 gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
          Length = 122

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
              NIPV + + + S  + + +L+   +G VI LDK  GE +D+ +N   +   E+ ++ 
Sbjct: 43  FFKNIPVTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVN 102

Query: 131 EDDTHFGVRVIEILNAQ 147
           E    +G+R+I+++++ 
Sbjct: 103 E---KYGLRLIDVVDSA 116


>gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
 gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
          Length = 98

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           + T +   + NI V + + LG   M + ++  L+ GD++ ++K+ G  V+I ++ +K+  
Sbjct: 21  RDTGDLKQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFLDEKKVGI 80

Query: 124 GEITIMEEDDTHFGVRVIEI 143
           GE  +M   D +FG+ + EI
Sbjct: 81  GEAILM---DENFGIVISEI 97


>gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes
           Clip81459]
 gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
 gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816]
          Length = 515

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           + ++EP+        E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + 
Sbjct: 421 EKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKES 480

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + E + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 481 MNEPLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515


>gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
 gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
          Length = 99

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M  
Sbjct: 30  VENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM-- 87

Query: 132 DDTHFGVRVIEI 143
            D +FG+ + EI
Sbjct: 88  -DENFGIVISEI 98


>gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
          Length = 504

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           + ++EP+        E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + 
Sbjct: 410 EKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKES 469

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + E + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 470 MNEPLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 504


>gi|258404715|ref|YP_003197457.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
           5692]
 gi|257796942|gb|ACV67879.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
           5692]
          Length = 109

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +P+++   LG+  + + +L+ L +G VI L+K  GE +D+ +N++ IA+ E  ++ E   
Sbjct: 33  VPLQVSAELGTTRILVKDLLQLREGSVIELEKLAGEPLDVFVNSRLIARAEAVVVNE--- 89

Query: 135 HFGVRVIEILN 145
             G+R+ ++++
Sbjct: 90  KIGLRLTDVVS 100


>gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM
           1251]
 gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++ + +++ +G   M + +++N+  G VI L++   + +DI +++  IA+GE+ 
Sbjct: 199 NIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDDNVIAEGEVV 258

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FGV++  I
Sbjct: 259 IV---DGNFGVQITSI 271


>gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
          Length = 502

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPVK++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D
Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKG---ILVRVD 490

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 491 DHFGIQMTELVR 502


>gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 120

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 54/98 (55%), Gaps = 9/98 (9%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           +N+SEP  +    + E+   +     NIPV + + + S  + + +L+   +G VI LDK 
Sbjct: 24  ENLSEPAYTP---LPER---DLSFFKNIPVTVTLEVASKEVALGDLMKAGEGSVIELDKM 77

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            GE +D+ +N   +   E+ ++ +    +G+R+I++++
Sbjct: 78  NGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVVD 112


>gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 111

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S  ++  ++++ V+    LG   + +  ++ L KG +I L K  GESV+  +N + + 
Sbjct: 20  ELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNGRILG 79

Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
           +GE+ + E++     +R+ E+L++
Sbjct: 80  RGEVMVYEKN---LAIRINEVLDS 100


>gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
 gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
          Length = 102

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V++ + LG   M + +++ + +G V+ L++   E +D+T N + +A+GE+      D  F
Sbjct: 16  VRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVI---AQDGRF 72

Query: 137 GVRVIEILN 145
            +R++E++ 
Sbjct: 73  ALRIVELVG 81


>gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 78

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           N+ V++ ++LG   M I  L+ + +G VI L  R  E + +  NN  IA+GEI +  E
Sbjct: 6   NVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIVQGE 63


>gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH]
 gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia
           profundicola AmH]
          Length = 103

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + +  ++ L KG VI L K  GES ++ IN + I KGE+ + E+   +  +R+ E
Sbjct: 32  LGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRIIGKGEVMVYEK---NLAIRLNE 88

Query: 143 ILNA 146
           +L+A
Sbjct: 89  VLDA 92


>gi|85706152|ref|ZP_01037247.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
 gi|85669316|gb|EAQ24182.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
          Length = 100

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132
           ++P+++ + +G     I +L+ L K  V+ LD+RV + V++ +  + +A+G +  ++ D 
Sbjct: 22  SVPIEITVSVGKARPSIRDLLKLGKNAVLVLDRRVDDMVELYVGERLVARGRLEELDGDQ 81

Query: 133 DTHFGVRVIEILNAQ 147
                VRV E+ N Q
Sbjct: 82  QGQIAVRVTEVANLQ 96


>gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 276

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++ + +++ +GS  M + +++++  G VI L++   + +++ I ++++A GE+ 
Sbjct: 193 NIGLIMDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELNQLANDPLEVLIGDKQVALGEVV 252

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FGV++ EI
Sbjct: 253 IV---DGNFGVQITEI 265


>gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion
           translocase SctQ) [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 445

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 17/112 (15%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
           SSP NN+                SS +++I E +         IPV + + +G   M + 
Sbjct: 349 SSPKNNASQ--------------SSPASSITENTKTGLITPNQIPVNLTVEVGRIQMSMD 394

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +L+ L  G+++ L+ +  + VD+TIN + + +GE+  + E     GVRV+E+
Sbjct: 395 HLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEV---LGVRVLEL 443


>gi|157147124|ref|YP_001454443.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
 gi|157084329|gb|ABV14007.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
          Length = 132

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           L   IPV + + + S  + ++ L++++   V+ LDK  GE +DI +N     K E+ ++ 
Sbjct: 53  LFSRIPVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAEVVVLN 112

Query: 131 EDDTHFGVRVIEI 143
           +    +G+R+IE 
Sbjct: 113 D---KYGLRIIEF 122


>gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 101

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + +LI ++ V++ + LG   M +  L  L  GDV+ L ++V E   + ++ + +A+G + 
Sbjct: 28  DMNLIKHVVVELVVQLGHASMSVDELFALKAGDVVKLLEQVHEPASLCLDGKPVARGNLV 87

Query: 128 IMEEDDTHFGVRVIEIL 144
            +   D +FG+++ EIL
Sbjct: 88  AV---DDNFGIQLTEIL 101


>gi|325107429|ref|YP_004268497.1| surface presentation of antigens (SPOA) protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967697|gb|ADY58475.1| surface presentation of antigens (SPOA) protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 295

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +MN+ VK+ + L    +++S L+NL  G ++   K   + +D+ +NN+  A+GE   + E
Sbjct: 214 LMNLNVKVSVRLAEMKIELSTLINLCPGTLLVFPKSCDDLLDLYVNNRLYAQGEAVKIGE 273

Query: 132 DDTHFGVRVIEI 143
               FG++V EI
Sbjct: 274 ---KFGLKVNEI 282


>gi|255262994|ref|ZP_05342336.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
 gi|255105329|gb|EET48003.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
          Length = 94

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P+++ I +G     +  L++L++  ++ LDK + + VDI + ++ IA+GE+  +E+ +
Sbjct: 15  DVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDTN 74

Query: 134 -THFGVRVIEILNA 146
            +   VR+ EI++ 
Sbjct: 75  ISQLAVRLTEIIDP 88


>gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 121

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV + + + S  + +  L+   +G VI LDK  GE +D+ +N   +   E+ ++ E   
Sbjct: 46  IPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINE--- 102

Query: 135 HFGVRVIEILNA 146
            +G+R+I+++++
Sbjct: 103 KYGLRLIDVVDS 114


>gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
          Length = 515

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +EPI        E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515


>gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM
           1740]
 gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
          Length = 289

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           N+ E    N  +++++ +++++ +G   M + +++++  G V+ L++   + ++I ++++
Sbjct: 197 NLSEPEMKNIGMLLDVKLQVKVRIGQKKMLLKDVISMDIGSVVELNQLANDPLEILVDDK 256

Query: 120 KIAKGEITIMEEDDTHFGVRVIEI 143
            IAKGE+ I+   D +FG+++ EI
Sbjct: 257 VIAKGEVVIV---DGNFGIQITEI 277


>gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori
           SouthAfrica7]
          Length = 282

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 60/101 (59%), Gaps = 12/101 (11%)

Query: 52  EPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           EP S++S     K+ D         N  +++++ + +++ +G   M + ++V++  G V+
Sbjct: 173 EPESAESATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVV 232

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            LD+ V + ++I ++++ IAKGE+ I+   D +FG+++ +I
Sbjct: 233 ELDQLVNDPLEILVDDKVIAKGEVVIV---DGNFGIQITDI 270


>gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28]
 gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e]
 gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
          Length = 515

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +EPI        E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515


>gi|224498782|ref|ZP_03667131.1| flagellar motor switch protein [Listeria monocytogenes Finland
           1988]
          Length = 515

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +EPI        E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515


>gi|254830309|ref|ZP_05234964.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
          Length = 515

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +EPI        E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515


>gi|255026112|ref|ZP_05298098.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
          Length = 515

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +EPI        E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515


>gi|260429524|ref|ZP_05783501.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
 gi|260420147|gb|EEX13400.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-ED 132
           ++P+++ + +G     + +L+ L +G V+TLDKR+ + V++ + ++ I  G + ++E  +
Sbjct: 18  SVPIEITVSVGRARPLVRDLLKLGEGSVLTLDKRLEDPVELYVGDRLIGIGALEVLEGGE 77

Query: 133 DTHFGVRVIEILN 145
           +    VR+ E+++
Sbjct: 78  NGQLAVRLTEVVD 90


>gi|16799783|ref|NP_470051.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|16413160|emb|CAC95940.1| lin0708 [Listeria innocua Clip11262]
          Length = 513

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           I++++    ++P+  +    L   ++   ++ +IPV ++++ G+  +++   ++  + DV
Sbjct: 416 IKEHETKEPAQPVVMEEKETL---SEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDV 472

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I L + + E + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 473 IILKESMNEPLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 513


>gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
 gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
 gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
 gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
          Length = 287

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57]
          Length = 287

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
          Length = 514

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D
Sbjct: 446 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 502

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 503 DHFGIQMTELVR 514


>gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori
           Gambia94/24]
          Length = 285

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 201 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 260

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 261 IV---DGNFGIQITDI 273


>gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas
           mendocina NK-01]
 gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas
           mendocina NK-01]
          Length = 279

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I  +PV++  ++ S  M +S ++ L  GD++ +  R+ E  D+ IN QK+ +G   I E+
Sbjct: 209 IRQLPVRLDCVVASLQMPLSQVLALRPGDILPM--RLLERCDVQINQQKLFRG--AIFED 264

Query: 132 DDTHF 136
           D + F
Sbjct: 265 DGSLF 269


>gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908]
 gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 285

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 201 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 260

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 261 IV---DGNFGIQITDI 273


>gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826]
 gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826]
          Length = 284

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++ + M++ +GS  M + +++ +  G VI L++   + ++I I ++ IA GE+ 
Sbjct: 201 NIGLIMDVRLPMRVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILIGDKVIALGEVV 260

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 261 II---DGNFGIQITQI 273


>gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
          Length = 504

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D
Sbjct: 436 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 492

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 493 DHFGIQMTELVR 504


>gi|126738562|ref|ZP_01754267.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
 gi|126720361|gb|EBA17067.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
          Length = 98

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +S N+  K+TD  +  +++PV++ + +G     I +LV L +  ++TLDKRV + VD+ +
Sbjct: 3   ESENLNMKATDASNPFVSVPVEVVVSVGKARPLIRDLVGLGENAILTLDKRVEDPVDLYV 62

Query: 117 NNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
            ++ +A+G++  M+ E      VR+ EI + Q
Sbjct: 63  GDRLVARGQLEEMDGEQAGQLAVRLTEIADLQ 94


>gi|290893997|ref|ZP_06556972.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|290556443|gb|EFD89982.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
          Length = 504

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D
Sbjct: 436 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 492

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 493 DHFGIQMTELVR 504


>gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99]
 gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220]
 gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 515

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D
Sbjct: 447 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 503

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 504 DHFGIQMTELVR 515


>gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99]
 gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
          Length = 285

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 201 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 260

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 261 IV---DGNFGIQITDI 273


>gi|254900064|ref|ZP_05259988.1| flagellar motor switch protein [Listeria monocytogenes J0161]
 gi|254911383|ref|ZP_05261395.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
 gi|254935710|ref|ZP_05267407.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|258608293|gb|EEW20901.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|293589320|gb|EFF97654.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
          Length = 515

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +EPI        E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + + E
Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 484 PLVLALNGVMIGKG---ILVRVDDHFGIQMTELVR 515


>gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
 gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|47095266|ref|ZP_00232877.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|47016337|gb|EAL07259.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
          Length = 504

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +EPI        E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + + E
Sbjct: 413 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 472

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + + +N   I KG   I+   D HFG+++ E++ 
Sbjct: 473 PLVLALNGVMIGKG---ILVRVDDHFGIQMTELVR 504


>gi|313624702|gb|EFR94658.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D
Sbjct: 330 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 386

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 387 DHFGIQMTELVR 398


>gi|313620056|gb|EFR91570.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D
Sbjct: 330 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 386

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 387 DHFGIQMTELVR 398


>gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 286

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +LI ++ + +++ +GS  M + +++++  G VI LD+   + ++I + ++ IA GE+ 
Sbjct: 203 NIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEILVGDKVIAMGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FGV++ EI
Sbjct: 263 IV---DGNFGVQIGEI 275


>gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
 gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
          Length = 284

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 61/103 (59%), Gaps = 13/103 (12%)

Query: 51  SEPISSDSNNILEKSTDNFDL----------IMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           S+ ++ D+N   E   + F+L          ++++ +++++ +G   M + +++ +  G 
Sbjct: 174 SDNVALDANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGS 233

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           V+ L++   +S+++ ++++ IAKGE+ I+   D +FG+++ EI
Sbjct: 234 VVELNQLANDSLEVLVDDKVIAKGEVVIV---DGNFGIQITEI 273


>gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str.
           Sheeba]
 gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 199 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 258

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 259 IV---DGNFGIQITDI 271


>gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
           DSM 13965]
          Length = 321

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 31/53 (58%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           +  +P+ +Q++LG   + +  L++L+ G V+ LD R G  VDI +  +   +G
Sbjct: 233 LRQVPLPVQVVLGRAQLTVRQLLDLAPGHVLPLDTRAGSLVDILVGGRLKFRG 285


>gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 541

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           SS  + + E+     DLI +IPV++  +LG   + +  L+    G V+ L       VDI
Sbjct: 449 SSPESTLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDI 508

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
             N + +A+GE+    E    FG+++ EI+
Sbjct: 509 LANGKLVARGEVVHYNE---RFGIKITEIM 535


>gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
 gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27]
 gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38]
 gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
 gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
          Length = 288

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 204 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 263

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 264 IV---DGNFGIQITDI 276


>gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278


>gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
 gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
          Length = 99

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + V + ++LG+C M I  ++ LS+G +I LD    + V +  NN  IA G + +   D  
Sbjct: 24  VTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVKVLANNLPIANGVVLV---DRN 80

Query: 135 HFGVRVIEIL 144
              V V E+L
Sbjct: 81  RIAVEVKEML 90


>gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1]
 gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278


>gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278


>gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52]
          Length = 290

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278


>gi|254465587|ref|ZP_05078998.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
 gi|206686495|gb|EDZ46977.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
          Length = 98

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
           G     I +LV+L +  ++TLDKRV + VD+ + ++ +A+G++  +E E      VR+ E
Sbjct: 30  GKARPLIRDLVSLGENAILTLDKRVEDPVDLYVGDRLVARGQLEELEGEQAGQLAVRLTE 89

Query: 143 ILNAQ 147
           I + Q
Sbjct: 90  IADLQ 94


>gi|313610118|gb|EFR85441.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
          Length = 515

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D 
Sbjct: 448 IPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVDD 504

Query: 135 HFGVRVIEILN 145
           HFG+++ E++ 
Sbjct: 505 HFGIQMTELVR 515


>gi|238762375|ref|ZP_04623346.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
 gi|238699360|gb|EEP92106.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
          Length = 105

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           L   IPV + + + S  + +S L++++   VI LDK  GE +DI IN     + E+ ++ 
Sbjct: 26  LFSRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVN 85

Query: 131 EDDTHFGVRVIEILNAQ 147
           E    +G+R+I   N+Q
Sbjct: 86  E---KYGLRIIS-FNSQ 98


>gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7]
          Length = 290

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 266 IV---DGNFGIQITDI 278


>gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695]
 gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM
           16994]
 gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM
           16994]
          Length = 288

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    N  LIM + + +++ +G   M + +++++  G VI L++   + +DI +++  IA
Sbjct: 199 EGEMKNIGLIMGVKLPVRVRIGKKKMLLKDVLSMDIGSVIELNQLANDPLDILVDDHVIA 258

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
           +GE+ I+   D +FGV++  I
Sbjct: 259 QGEVVIV---DGNFGVQITSI 276


>gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12]
 gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
 gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+ 
Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 IV---DGNFGIQITDI 275


>gi|116872089|ref|YP_848870.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740967|emb|CAK20087.1| flagellar motor switch domain protein [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 512

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV ++++ G+  +++   ++  + DV+ L + + E + + +N   I KG   I+   D
Sbjct: 444 DIPVTLEVVFGTAKVKLEKFISWCEKDVVILKESMNEPLVLALNGVTIGKG---ILVRVD 500

Query: 134 THFGVRVIEILN 145
            HFG+++ E++ 
Sbjct: 501 DHFGIQMTELVR 512


>gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
 gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
          Length = 109

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           ++  +L+K     D++ N+ V+    LG   M +  ++ L +G ++ L K  GESVD+ +
Sbjct: 13  ENEELLKKLEWYGDIMFNLDVE----LGRIAMTLREVLELKEGSIVELKKTAGESVDVMV 68

Query: 117 NNQKIAKGEITIME 130
           N   +A  EI ++E
Sbjct: 69  NQCLLATAEIVVIE 82


>gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC30]
 gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC10]
 gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC20]
 gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC30]
 gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC10]
 gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC20]
          Length = 332

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +P++ D +  L+KS +       + + ++++LG   M +S  ++L +GDVI LDK++ E 
Sbjct: 243 QPVNQDDSRELQKSLNG------VGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKITEP 296

Query: 112 VDITINNQKIAKGE 125
           ++  I+ +   + +
Sbjct: 297 LETFIDGKPYFRAK 310


>gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
 gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
          Length = 332

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +P++ D +  L+KS +       + + ++++LG   M +S  ++L +GDVI LDK++ E 
Sbjct: 243 QPVNQDDSRELQKSLNG------VGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKITEP 296

Query: 112 VDITINNQKIAKGE 125
           ++  I+ +   + +
Sbjct: 297 LETFIDGKPYFRAK 310


>gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
           ATCC 12755]
          Length = 336

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +P++ D +  L+KS +       + + ++++LG   M +S  ++L +GDVI LDK++ E 
Sbjct: 247 QPVNQDDSRELQKSLNG------VGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKITEP 300

Query: 112 VDITINNQKIAKGE 125
           ++  I+ +   + +
Sbjct: 301 LETFIDGKPYFRAK 314


>gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4]
 gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4]
          Length = 122

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
              +IPV + + + S  + + +L+   +G VI LDK  GE +D+ +N   + + E+ ++ 
Sbjct: 43  FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVIN 102

Query: 131 EDDTHFGVRVIEI 143
           +    +G+R+IE+
Sbjct: 103 D---KYGLRLIEV 112


>gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267]
 gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267]
          Length = 277

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           ++  ++  ++++ +   N  LIM++ + + + +GS  M + +++ +  G VI L++   +
Sbjct: 177 AQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLKDVLTMDIGSVIELNQLAND 236

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            ++I I+++ +A GE+ I+   D +FG+++ +I
Sbjct: 237 PLEILISDKVVALGEVVIV---DGNFGIQITQI 266


>gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15]
 gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000]
 gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15]
 gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000]
          Length = 103

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V++ ++LG   + +  L+ + +G VI LD +  + V I  NN  IA+GEI I
Sbjct: 29  VEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQI 80


>gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula
           marina DSM 3645]
 gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula
           marina DSM 3645]
          Length = 309

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           ++ I +++ + L S  M++  +  L  G +I  DK   ES+D+ +   +IA+GE   + +
Sbjct: 224 LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGD 283

Query: 132 DDTHFGVRVIEIL 144
               FG+RV  +L
Sbjct: 284 ---KFGMRVTNVL 293


>gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31]
 gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp.
           K31]
          Length = 83

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V++ ++LG   + +  L+ + +G VI LD +  + V I  NN  IA+GEI I
Sbjct: 9   VEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60


>gi|89072283|ref|ZP_01158862.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89051815|gb|EAR57267.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 121

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV + + + S  + +  L+   +G VI LDK  GE +D+ +N   +   E+ ++ E   
Sbjct: 46  IPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINE--- 102

Query: 135 HFGVRVIEILNA 146
            +G+R+I+++ +
Sbjct: 103 KYGLRLIDVVES 114


>gi|119385378|ref|YP_916434.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
 gi|119375145|gb|ABL70738.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
          Length = 85

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 40/68 (58%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            I V++ I LG   + ++ L  L   D++TLD+ + + V+I + ++ IA+GE+   +E D
Sbjct: 12  QIQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVSGDETD 71

Query: 134 THFGVRVI 141
               VR++
Sbjct: 72  NRLCVRIL 79


>gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
 gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
          Length = 502

 Score = 41.6 bits (96), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPVK++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   + 
Sbjct: 435 IPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKG---ILVRVND 491

Query: 135 HFGVRVIEILN 145
           HFG+++ E++ 
Sbjct: 492 HFGIQMTELVR 502


>gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 462

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I +IP+ +   +G   M +  LV L  G+++ L+    + +D+ +N +++A+GE+  + +
Sbjct: 393 IDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGELLSIGD 452

Query: 132 DDTHFGVRVIEI 143
                GVRV+EI
Sbjct: 453 ---ALGVRVLEI 461


>gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
           ATCC 21756]
 gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
           ATCC 21756]
          Length = 83

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V++ ++LG   + +  L+ + +G VI LD +  + V I  NN  IA+GEI I
Sbjct: 9   VEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60


>gi|188997537|ref|YP_001931788.1| surface presentation of antigens (SPOA) protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932604|gb|ACD67234.1| surface presentation of antigens (SPOA) protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 87

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LI NI + + I L S       L+NL +GD+I L+K + + V+I   N+K+  GE+  + 
Sbjct: 16  LIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFLNEKVGFGELVNVN 75

Query: 131 EDDTHFGVRVIEIL 144
           E    +GVR+++++
Sbjct: 76  E---KYGVRLVDLI 86


>gi|315126004|ref|YP_004068007.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
 gi|315014518|gb|ADT67856.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
          Length = 110

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
              ++P+ + + + S  + +  L    +GDV+ LDK  GE++D+ +N    AK E+ ++E
Sbjct: 35  FFQDVPLLVTLEVASTEITLGELSQAKEGDVLKLDKVAGEALDVKVNGVFFAKAEVVMVE 94

Query: 131 EDDTHFGVRVIE 142
                +G++  +
Sbjct: 95  ---GQYGLKFAQ 103


>gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
 gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
          Length = 321

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +S ++ + I  +PV++  ++ S  M ++ ++ L  GD++ +  R+ E  D+ IN QK+ +
Sbjct: 243 QSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPM--RLLERCDVQINQQKLFR 300

Query: 124 GEITIMEEDDTHF 136
           G   I E+D + F
Sbjct: 301 G--AIFEDDGSLF 311


>gi|90577376|ref|ZP_01233187.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90440462|gb|EAS65642.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 121

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  +      IPV + + + S  + +  L+   +G VI LDK  GE +D+ +N   +   
Sbjct: 36  SQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHA 95

Query: 125 EITIMEEDDTHFGVRVIEILNA 146
           E+ ++ E    +G+R+I+++ +
Sbjct: 96  EVVVINE---KYGLRLIDVVES 114


>gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC
           49179]
 gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC
           49179]
          Length = 292

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 59/89 (66%), Gaps = 4/89 (4%)

Query: 56  SDSNNILEK-STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           ++S+  LE+    N +++++I + +++ +G   M + ++V++  G VI L++ V + ++I
Sbjct: 194 TESDGHLEQLEARNINMLLDIKLNVRVRIGQKKMILKDVVSMDIGSVIELNQMVNDPLEI 253

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            ++++ IAKGE+ I+   D +FG+++ +I
Sbjct: 254 LVDDKVIAKGEVVIV---DGNFGIQITDI 279


>gi|261341514|ref|ZP_05969372.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316312|gb|EFC55250.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
          Length = 133

 Score = 40.8 bits (94), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           L   IPV + + + S  + ++ L+ +    VI LDK  GE +DI +N     K E  ++ 
Sbjct: 54  LFSRIPVTLTLEVASVEVSLAELMTVGHDSVIELDKMAGEPLDIKVNGILFGKAEAVVL- 112

Query: 131 EDDTHFGVRVIEI 143
             +  +G+R++E 
Sbjct: 113 --NDKYGLRILEF 123


>gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92]
 gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein
           [Campylobacter curvus 525.92]
          Length = 286

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +LIM++ + +++ +GS  M + +++++  G VI L++   + ++I I ++ IA GE+ 
Sbjct: 203 NINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVIELNQLANDPLEILIGDKVIALGEVV 262

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 263 II---DGNFGIQITQI 275


>gi|110677671|ref|YP_680678.1| flagellar motor switch protein FliN, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453787|gb|ABG29992.1| flagellar motor switch protein FliN, putative [Roseobacter
           denitrificans OCh 114]
          Length = 97

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 5/77 (6%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P+++ + +G     I +LV L +  V++LDK V + VD+ I ++ IA+G   + E+DD
Sbjct: 20  SVPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVEDPVDLYIGDRLIARG--MLEEKDD 77

Query: 134 THFG---VRVIEILNAQ 147
              G   VR+ E+++ +
Sbjct: 78  DQSGQLIVRLTEVIDLK 94


>gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 330

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 8/74 (10%)

Query: 58  SNNILEKSTDNFDLIMN------IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           S+++ E+S D+  ++ N      +PVK  I++GS  + +  L+ L+ GDVI L++R+ E 
Sbjct: 236 SSSVKERSKDSALVLKNRIENAMVPVK--ILIGSTVITVRELLELAPGDVIPLERRLDED 293

Query: 112 VDITINNQKIAKGE 125
           +++ I  +   +G+
Sbjct: 294 LEVVIGQKPKFRGK 307


>gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 83

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           V++ ++LG   + +S L+ + +G VI LD    + V I  NN  +A+G I I E+
Sbjct: 9   VELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARGMIEIRED 63


>gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
           27750]
 gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
           27750]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPVK   +LG+  + +S+  NL  GD+I +DK+V + +++ + N K  K      E+   
Sbjct: 258 IPVKA--VLGTSKISVSDFANLQIGDIIRIDKKVDQELEVFVGNIKKFKALPGYYED--- 312

Query: 135 HFGVRVIEILNAQ 147
            + VRV E++  +
Sbjct: 313 KYAVRVTEVIRKE 325


>gi|328543417|ref|YP_004303526.1| surface presentation of antigens protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413162|gb|ADZ70225.1| Putative surface presentation of antigens protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 88

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
            FD    I V + ++LG+  M +  L+ + +G VI LD    + V I  NN  +AKG++ 
Sbjct: 3   TFD---EISVDISVVLGTTEMPVHQLLRMGRGAVIDLDVAEEDDVKIFANNTLVAKGQVV 59

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ E     GV + E+L
Sbjct: 60  LLGE---RIGVSITEVL 73


>gi|237800782|ref|ZP_04589243.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023640|gb|EGI03697.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 353

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 53  PISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           P + D N+++ + + + DL   + ++P+ +   LGS  + ++ L  ++ G ++ L     
Sbjct: 260 PYTYDRNDLMSELSTDADLDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLAH 319

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + VD+ +N +++ +GE+  + +     GVR++
Sbjct: 320 DEVDLMVNGRRVGRGELVTIGDG---LGVRLL 348


>gi|86749492|ref|YP_485988.1| hypothetical protein RPB_2372 [Rhodopseudomonas palustris HaA2]
 gi|86572520|gb|ABD07077.1| Surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris HaA2]
          Length = 80

 Score = 40.0 bits (92), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           N+ V + ++LG+  M I  ++ LS+G +I LD    + V I  NN  +A G + +   D 
Sbjct: 6   NVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPVASGVVLV---DR 62

Query: 134 THFGVRVIEILN 145
               V V ++L 
Sbjct: 63  NRIAVEVKQMLT 74


>gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
 gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
 gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
          Length = 278

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N ++I+++ + +++ +G   M + +++ +  G VI L++   + +DI ++++ IAKGE+ 
Sbjct: 194 NINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLDILVDDKVIAKGEVV 253

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 254 IV---DGNFGIQITDI 266


>gi|118591116|ref|ZP_01548515.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
 gi|118436192|gb|EAV42834.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
          Length = 88

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           I V + ++LG   M +  L+ + +G VI LD    E V I  NN  +AKG++ ++ E   
Sbjct: 7   IKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGE--- 63

Query: 135 HFGVRVIEIL 144
             G+ + E+L
Sbjct: 64  RIGISITEVL 73


>gi|149177723|ref|ZP_01856323.1| probable flagellar motor switch protein fliN [Planctomyces maris
           DSM 8797]
 gi|148843373|gb|EDL57736.1| probable flagellar motor switch protein fliN [Planctomyces maris
           DSM 8797]
          Length = 295

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I  +PV+  + L S  ++++ L+++  G +IT DK   + +++ INNQ    GE   + E
Sbjct: 214 ISKLPVQAIVKLASKKIEMNQLLSICPGSLITFDKPCEDPLELYINNQVYCLGEAVKIGE 273

Query: 132 DDTHFGVRV 140
              HFG+++
Sbjct: 274 ---HFGLKI 279


>gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
           2876]
 gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
           2876]
          Length = 329

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPVK   +LG+  + +++ +NL+ GD+I LD++V E +D+ + N  I K        DD 
Sbjct: 260 IPVKA--VLGNSTISVNDFLNLNVGDIIRLDRKVDEELDVYVGN--IHKFTALPGSADD- 314

Query: 135 HFGVRVIEILNAQ 147
           ++ VR+  +L  +
Sbjct: 315 NYAVRITNVLRGE 327


>gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01]
          Length = 122

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
              +IPV + + + S  + + +L+   +G VI LDK  GE +D+ +N   + + E+ ++ 
Sbjct: 43  FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVIN 102

Query: 131 EDDTHFGVRVIEI 143
           +    +G+R+I++
Sbjct: 103 D---KYGLRLIDV 112


>gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684]
 gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684]
          Length = 301

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D + +I V++   LG   + +    ++  G V+ LD++  + VD+ +N  + A G  T++
Sbjct: 211 DALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDRKADDPVDLYVNGLRFASG--TLV 268

Query: 130 EEDDTHFGVRVIEI 143
             DD  + +R+ E+
Sbjct: 269 LTDDGEWALRLAEV 282


>gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277]
 gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277]
          Length = 277

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  LIM++ + + + +GS  M + +++ +  G VI L++   + ++I I+++ +A GE+ 
Sbjct: 194 NIGLIMDVCLPLHVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILISDKVVALGEVV 253

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 254 IV---DGNFGIQITQI 266


>gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT
           98-5491]
 gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
 gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
          Length = 285

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/76 (22%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ +++++ +G   M + +++ +  G V+ L++   + +++ ++++ IAKGE+ 
Sbjct: 202 NMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVV 261

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ EI
Sbjct: 262 IV---DGNFGIQITEI 274


>gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
 gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
          Length = 83

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V++ ++LG   + +  L+ + +G VI LD    + V I  NN  +A+GEI I
Sbjct: 9   VEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGEIEI 60


>gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
 gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
          Length = 518

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/93 (21%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +EPI  +       +T+   +I +IP+ +++I G+  +++++ +   + D++ L +   +
Sbjct: 427 AEPIQVEKATPQISTTETEAVIDSIPITLEVIFGTAKVKLADFITWCEKDIVILKESYEQ 486

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            + +  N   I  G  T++  +D HFG+++ E+
Sbjct: 487 PLSLLANGIHIGSG--TLVRVND-HFGIKITEL 516


>gi|254470456|ref|ZP_05083860.1| putative surface presentation of antigens protein [Pseudovibrio sp.
           JE062]
 gi|211960767|gb|EEA95963.1| putative surface presentation of antigens protein [Pseudovibrio sp.
           JE062]
          Length = 88

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
            FD   +I V + ++LG   M +  L+ + +G VI LD    + V I  NN  +A+G++T
Sbjct: 3   RFD---DISVDISVVLGKSEMPVHQLLRMGRGAVIELDTHEADDVTILANNTPVAEGQVT 59

Query: 128 IM 129
           ++
Sbjct: 60  VV 61


>gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
          Length = 105

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V++ ++LG   + I   + + +G VI LD    + V I  NN  IA+GEI I
Sbjct: 31  VQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAAEHDEVWILANNHPIARGEIII 84


>gi|134300237|ref|YP_001113733.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           reducens MI-1]
 gi|134052937|gb|ABO50908.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           reducens MI-1]
          Length = 128

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I ++ V +   LG   ++   ++NL  G V+ ++K  G+++++ IN+ K A+GEI I+  
Sbjct: 49  IEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIV-- 106

Query: 132 DDTHFGVRV 140
            +  F VR+
Sbjct: 107 -NDKFAVRI 114


>gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53]
 gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisA53]
          Length = 82

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S   FD    + V + ++LG+  M +  ++ LS+G +I LD    + V I  NN  +A G
Sbjct: 2   SVPTFD---KVSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASG 58

Query: 125 EITI 128
            + +
Sbjct: 59  MVLV 62


>gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 279

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/76 (22%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N  +++++ +++++ +G   M + +++ +  G V+ L++   + +++ ++++ IAKGE+ 
Sbjct: 196 NMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVV 255

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ EI
Sbjct: 256 IV---DGNFGIQITEI 268


>gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 229

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           L   +PV +  IL    + +  L  + +G+VI L+  + E ++I  NN +IA+G++  ME
Sbjct: 154 LCAQVPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEERIEIRANNVRIARGKLLGME 213

Query: 131 EDDTHFGVRVIEILNAQ 147
             +   GV + ++  ++
Sbjct: 214 --NGALGVELTQLYQSK 228


>gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009]
 gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1]
 gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris DX-1]
 gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris
           CGA009]
 gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris TIE-1]
 gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris DX-1]
          Length = 80

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V + ++LG+  M I  ++ LS+G +I LD    + V I  NN  IA G + +   D    
Sbjct: 9   VDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV---DRNRI 65

Query: 137 GVRVIEIL 144
            V V ++L
Sbjct: 66  AVEVKQML 73


>gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
 gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
          Length = 547

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V  + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+
Sbjct: 453 VAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            + E + I +N+  +A GE+  +   D  FGV+V + L
Sbjct: 513 DIDEPIQIYVNDVLVAYGELVNV---DGFFGVKVTKTL 547


>gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           sp. 4-46]
 gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           sp. 4-46]
          Length = 101

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V + ++LG   M I  L+ + +G VI LD    + VDI  N+  IA+G+I +
Sbjct: 9   VDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVV 60


>gi|163732489|ref|ZP_02139934.1| flagellar motor switch protein FliN, putative [Roseobacter
           litoralis Och 149]
 gi|161393849|gb|EDQ18173.1| flagellar motor switch protein FliN, putative [Roseobacter
           litoralis Och 149]
          Length = 97

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P+++ + +G     I +LV L +  V++LDK V + VD+ I ++ IA+G +   E D 
Sbjct: 20  SVPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVDDPVDLYIGDRLIARGMLEEKEGDQ 79

Query: 134 T-HFGVRVIEILN 145
           +    VR+ E+++
Sbjct: 80  SGQLIVRLTEVID 92


>gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
 gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
          Length = 548

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 457 VVQPIEYKEVKQVEPVYMDASILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDID 516

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 EPIQIYVNDVLVAYGELVNV---DGFFGVKV 544


>gi|114764046|ref|ZP_01443285.1| flagellar motor switch protein FliN [Pelagibaca bermudensis
           HTCC2601]
 gi|114543404|gb|EAU46419.1| flagellar motor switch protein FliN [Roseovarius sp. HTCC2601]
          Length = 95

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
           +P+++ + +G     + +L+ L  G V+TLDKR+ + V++ + ++ I  G + +++  ++
Sbjct: 19  VPIEITVSVGRARPLVRDLLKLGAGSVLTLDKRLEDPVELYVGDRLIGIGALEVVDGGEN 78

Query: 134 THFGVRVIEILN 145
               VR+ E+++
Sbjct: 79  GQLAVRLTEVVD 90


>gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           harveyi ATCC BAA-1116]
 gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116]
          Length = 122

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
              +IPV + + + S  + + +L+   +G VI LDK  GE +D+ +N   + + E+ ++ 
Sbjct: 43  FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVIN 102

Query: 131 EDDTHFGVRVIEI 143
           +    +G+R+I +
Sbjct: 103 D---KYGLRLINV 112


>gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18]
 gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
          Length = 80

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V + ++LG+  M I  ++ LS+G +I LD    + V I  NN  IA G + +
Sbjct: 9   VDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV 60


>gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC
           51449]
 gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449]
          Length = 278

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N ++I+++ + +++ +G   M + +++ +  G VI L++   + ++I ++++ IAKGE+ 
Sbjct: 194 NINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEILVDDKVIAKGEVV 253

Query: 128 IMEEDDTHFGVRVIEI 143
           I+   D +FG+++ +I
Sbjct: 254 IV---DGNFGIQITDI 266


>gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
           B316]
 gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
           B316]
          Length = 327

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           +++PVK   ILG C + +S+ V+L  GD+I LD RV   + + + N
Sbjct: 256 VDVPVKA--ILGKCNVSVSDFVHLQAGDIIRLDNRVNTDMQVYVGN 299


>gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT]
 gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT]
          Length = 331

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 62  LEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           LE S +     MN+  + M ++LGS  + I   + LS GDVITLD      V + + N+ 
Sbjct: 243 LEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDVITLDSLTSSPVKVVVGNEP 302

Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
              G    + ++    GV++++I++
Sbjct: 303 YLLGRPGTIGKNR---GVQILDIID 324


>gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10]
 gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris
           MCS10]
          Length = 99

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           I ++ V++ ++LG   M I   + + +G VI LD    + V I  NN  IA+G++ I
Sbjct: 21  ISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVVI 77


>gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88]
 gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88]
          Length = 332

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           +LG   + +   + LS GDV+ LD ++ + + I + NQ  A G+  ++   D + G++++
Sbjct: 265 VLGGAKITVEEFLRLSLGDVLILDNQIDKPISINVENQLYAYGKPGVV---DKNMGIQIL 321

Query: 142 EILN 145
           +IL+
Sbjct: 322 DILD 325


>gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
 gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis
           KBAB4]
 gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
          Length = 548

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 457 VVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDID 516

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 EPIQIYVNDVLVAYGELVNV---DGFFGVKV 544


>gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1]
          Length = 545

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           ++PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E
Sbjct: 455 AQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDE 514

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRV 140
            + I +N+  +A GE+  +   D  FGV+V
Sbjct: 515 PIRIYVNDVLVAYGELVNV---DGFFGVKV 541


>gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5]
 gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB5]
          Length = 80

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            + V + ++LG+  M I  ++ LS+G +I LD    + V I  NN  IA G + +   D 
Sbjct: 6   KVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLV---DR 62

Query: 134 THFGVRVIEILN 145
               V V ++L 
Sbjct: 63  NRIAVEVKQMLT 74


>gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
 gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
          Length = 122

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
              +IPV + + + S  + + +L+   +G VI LDK  GE +D+ +N   + + E+ ++ 
Sbjct: 43  FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVI- 101

Query: 131 EDDTHFGVRVIEI 143
             +  +G+R+I +
Sbjct: 102 --NDKYGLRLINV 112


>gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
           DSM 12653]
          Length = 330

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           IP+ +Q  LGS  + + +L+    GDVI LDKR  E V++ I+ +   KG
Sbjct: 258 IPLTVQ--LGSTTVTVGDLLKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG 305


>gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 80

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 15/70 (21%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++ + + + +G   + ++ ++ L +GD+I  DK++ + +D+ +N QK   GE+ I+ +  
Sbjct: 13  DVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKFGIGELVIVND-- 70

Query: 134 THFGVRVIEI 143
             + +R++++
Sbjct: 71  -KYSLRLVDL 79


>gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 326

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            +S+P   D    L       ++I +I V++  +LG   + I  ++  + GDVI L +R 
Sbjct: 231 GVSKPTPDDWKTTL------MEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSRRS 284

Query: 109 GESVDITINNQKIAKG 124
            E VD+ +     AKG
Sbjct: 285 DEEVDLLVEGNLFAKG 300


>gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
 gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
          Length = 348

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            I V+++ ++G   +++S ++ L  GDVI L++RV + V + I  ++  +    I     
Sbjct: 263 KIEVELRAVMGRTRIKLSEMMTLEVGDVIVLERRVNQPVQVYIGEREKFRA---IPGRSG 319

Query: 134 THFGVRVIEIL 144
            H  +R++E++
Sbjct: 320 KHRALRILEVV 330


>gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 330

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           IP+ +Q  LGS  + + +L+    GDVI LDKR  E V++ I+ +   KG
Sbjct: 258 IPLTVQ--LGSTTVTVGDLLKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG 305


>gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
 gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
          Length = 323

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D   ++EK      ++  +PV++   +G   + + + + L  GDVITL+K VGE +++ +
Sbjct: 245 DYRTVVEK------ILAEVPVELIAYIGRTRLPVRDFIQLQVGDVITLEKTVGEDLELYV 298

Query: 117 NNQ 119
           +  
Sbjct: 299 DGH 301


>gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 318

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 227 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 286

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 287 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 314


>gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum
           BKT015925]
 gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum
           BKT015925]
          Length = 331

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 62  LEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           LE+S +     MN+  + M+ +LGS  + +   + LS GDV+TLD      V + + NQ 
Sbjct: 243 LEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDVVTLDALTSSPVKMMVGNQP 302

Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
               +   M ++    GV++++I++
Sbjct: 303 YLLAKPGTMGKNR---GVQILDIID 324


>gi|315281354|ref|ZP_07869994.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|313614993|gb|EFR88497.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|328475657|gb|EGF46406.1| flagellar motor switch domain protein [Listeria monocytogenes 220]
          Length = 54

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M+E+   FG+ + EI
Sbjct: 1   MPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDEN---FGIVISEI 53


>gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 227

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           ++++I + + + LG   + +  ++++  G VITLD+   E +++ +N       E+  + 
Sbjct: 149 VLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIG 208

Query: 131 EDDTHFGVRVIE 142
           E    +G+R++E
Sbjct: 209 E---KYGIRIVE 217


>gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
           YK9]
 gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
           YK9]
          Length = 333

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
            +P+ ++  LG   + +   +NL +GDVITL+K VGE ++I + N+
Sbjct: 258 QLPIAVE--LGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNK 301


>gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
 gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579]
 gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
          Length = 546

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
 gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
 gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
 gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
          Length = 548

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 459 QPIEYQEVKQVEPVYMDASILKNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEP 518

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 519 IQIYVNDVLVAYGELVNV---DGFFGVKV 544


>gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 308

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           +   P+ ++ +LG   M++   + L  GDVI LD RVG  + + + N+
Sbjct: 238 VQEAPLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNK 285


>gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
           4222]
 gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
           4222]
          Length = 544

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 453 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 512

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 513 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 540


>gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
 gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
          Length = 547

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 456 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543


>gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
           2396]
 gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
           2396]
          Length = 318

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P++SD+ +  E      DL  N+ +K++  LGS  + ++ L  +++G    L   +   V
Sbjct: 221 PMTSDTQHTPEPLDAPSDL-GNLELKLEFHLGSLNLTLAELSQMTEGAAFDLGLSLEAPV 279

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            + +N Q +A+ E+    E D   G RV+ +
Sbjct: 280 AMKVNGQTLARCELV---EIDGRLGARVVRL 307


>gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
 gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
 gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 545

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541


>gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
 gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
 gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 546

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
 gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
          Length = 545

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541


>gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
 gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
          Length = 546

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 544

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 453 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 512

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 513 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 540


>gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
 gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
          Length = 547

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 456 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543


>gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
 gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
 gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
 gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
 gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
 gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
 gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
 gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
          Length = 545

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541


>gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 545

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541


>gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842]
 gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842]
          Length = 545

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541


>gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264]
 gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
          Length = 546

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 546

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
 gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
          Length = 546

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
 gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
          Length = 546

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820]
 gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
 gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820]
 gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
 gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 546

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
 gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
          Length = 329

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           ++  N +LIM+I + ++I +G   M I ++++L  G +I LDK + E +DI +N
Sbjct: 241 EAPKNLNLIMDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVN 294


>gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia
           94]
          Length = 546

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
 gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation
           [Bacillus anthracis str. A2012]
 gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W]
 gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str.
           CDC 684]
 gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str.
           A0248]
 gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
 gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
 gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
 gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str.
           Ames]
 gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str.
           Sterne]
 gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L]
 gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W]
 gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str.
           CDC 684]
 gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str.
           A0248]
          Length = 546

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           stutzeri DSM 4166]
          Length = 279

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D I ++PV++  ++ +  M ++ ++ L   D++ L  R  +  ++ IN QK+ +G  TI 
Sbjct: 207 DHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML--RPLDRYEVRINQQKLFRG--TIF 262

Query: 130 EEDDTHFGVRVIEILNAQ 147
           EED   F +  +E +N Q
Sbjct: 263 EEDGALF-LTSLESVNPQ 279


>gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 547

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 518 IRIYVNDVLVAYGELVNV---DGFFGVKV 543


>gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
 gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
          Length = 546

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 546

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
 gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
          Length = 547

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 518 IRIYVNDVLVAYGELVNV---DGFFGVKV 543


>gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus
           NVH0597-99]
 gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus
           NVH0597-99]
 gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 546

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
 gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
 gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam]
 gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
 gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
          Length = 547

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 518 IRIYVNDVLVAYGELVNV---DGFFGVKV 543


>gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
 gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
 gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
 gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
          Length = 547

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 456 VVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543


>gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
 gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
          Length = 80

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           N+ V + ++LG+  M I  ++ LS+G +I LD    + V +  NN  +A G + +
Sbjct: 6   NVSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60


>gi|126730034|ref|ZP_01745846.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
 gi|126709414|gb|EBA08468.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
          Length = 95

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132
           ++P+++ + +G     +  L+ L++G V+ LDK++ + V++ +  + I  G + ++E D 
Sbjct: 18  SVPIEITVSVGKARPLVRELLQLNEGSVLALDKQLDDPVELYVGEKLIGIGVLEVVEGDG 77

Query: 133 DTHFGVRVIEILNAQ 147
                VR+ E+++ Q
Sbjct: 78  QGQLAVRLTEVVDLQ 92


>gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis
           Ellin345]
          Length = 252

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            G   M + +++ L  G V+ LD+ + + V++ ++ + IA+G + ++   D ++G+RV E
Sbjct: 189 FGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVV---DGNYGLRVAE 245

Query: 143 I 143
           +
Sbjct: 246 V 246


>gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
 gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
          Length = 320

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           + N+PV + +   S  ++ S+LV+L  GDVI L  R+ E +DI    +  A
Sbjct: 244 LQNVPVAVSVKFQSVRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFA 294


>gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae]
          Length = 325

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           + S+++N+  +S  N + I  IP++ ++  G   +++  L +LS+G +I L   V   V 
Sbjct: 212 MYSETDNLANQSLTNLEEI-QIPIRFEV--GRQYIELQALTHLSEGSLIDLAVPVNGDVR 268

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           I  N Q +  G++    E     G++V+E+ 
Sbjct: 269 IIANQQPLGTGQLV---EIQGRLGIKVVELF 296


>gi|82470759|gb|ABB77411.1| HrcQ [Pantoea stewartii subsp. stewartii]
          Length = 336

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
            S D+F L M +P+ +++  G   + +  L +L  G V+TLD       D+      IA+
Sbjct: 254 ASDDHFSLAM-LPLSLEVRCGRTRLTLGELQHLQPGSVLTLDNMTPGEADLYYGETLIAQ 312

Query: 124 GEITIME 130
           GE+  +E
Sbjct: 313 GELVDVE 319


>gi|225850265|ref|YP_002730499.1| flagellar motor switch phosphatase FliY [Persephonella marina
           EX-H1]
 gi|225646313|gb|ACO04499.1| flagellar motor switch phosphatase FliY [Persephonella marina
           EX-H1]
          Length = 79

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            + ++ VK+   +G        ++ L +GD+I LDK + + V++ + +Q  A GE+ +  
Sbjct: 9   FLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELIVAN 68

Query: 131 EDDTHFGVRVIEI 143
           E    +G+RV+++
Sbjct: 69  EK---YGIRVVDL 78


>gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
 gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
          Length = 547

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 456 VVQPIEFKEVKQIEPVYIDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV+V
Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543


>gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
 gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
          Length = 80

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           N+ V + ++LG+  M I  ++ LS+G +I LD    + V +  NN  +A G + +
Sbjct: 6   NVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60


>gi|116514990|ref|YP_802619.1| hypothetical protein BCc_047 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256844|gb|ABJ90526.1| flagellar motor switch protein, C-ring protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 134

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV + I L    + I  L+   KG ++ L+  + + ++I INN  IA GE+ +   ++ 
Sbjct: 63  IPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELVV---NND 119

Query: 135 HFGVRVIEIL 144
            +GV++ ++L
Sbjct: 120 CYGVQITKLL 129


>gi|237755392|ref|ZP_04584019.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692433|gb|EEP61414.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 87

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           +NIP+ ++  L S       L+NL +GD+I L+K + + V+I  +N+K   GE+  +   
Sbjct: 20  INIPIVIE--LASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFSNEKAGFGELVNV--- 74

Query: 133 DTHFGVRVIEIL 144
           +  +G R+++++
Sbjct: 75  NGKYGARLVDLI 86


>gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
 gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
          Length = 327

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 29/42 (69%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           V ++  LG+  M++ + ++L +GD++TLDK+V + + + IN 
Sbjct: 262 VYLEFRLGTAAMKVEDFLSLKEGDLLTLDKKVDDELPVFING 303


>gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
 gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
          Length = 548

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 459 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 518

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 519 IRIYVNDVLVAYGELVNV---DGFFGVKV 544


>gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
 gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
          Length = 546

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           sp. Ex25]
 gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
 gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           sp. Ex25]
 gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
          Length = 123

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 63  EKSTDNFDL--IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           E +T   DL    +IPV + + + S  + + +L+   +G VI L+K  GE +D+ +N   
Sbjct: 34  EPATAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSL 93

Query: 121 IAKGEITIMEEDDTHFGVRVIEI 143
           +   E+ ++   +  +G+R+I++
Sbjct: 94  MGHAEVVVV---NDKYGLRLIDV 113


>gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
          Length = 123

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
              +IPV + + + S  + + +L+   +G VI L+K  GE +D+ +N   +   E+ ++ 
Sbjct: 44  FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLLGHAEVVVVN 103

Query: 131 EDDTHFGVRVIEI 143
           +    +G+R+I++
Sbjct: 104 D---KYGLRLIDV 113


>gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241]
 gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241]
          Length = 546

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
 gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
          Length = 546

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
          Length = 546

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
 gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187]
 gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
          Length = 546

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 546

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1]
          Length = 546

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + I +N+  +A GE+  +   D  FGV+V
Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542


>gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 80

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M +  ++ LS+G +I LD    + V I +NN  IA G + +
Sbjct: 7   VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMV 60


>gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 123

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 63  EKSTDNFDL--IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           E +T   DL    +IPV + + + S  + + +L+   +G VI L+K  GE +D+ +N   
Sbjct: 34  EPATAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSL 93

Query: 121 IAKGEITIMEEDDTHFGVRVIEI 143
           +   E+ ++   +  +G+R+I++
Sbjct: 94  MGHAEVVVV---NDKYGLRLIDV 113


>gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
 gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
          Length = 548

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 457 VVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDID 516

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   D  FGV++
Sbjct: 517 EPIQIYVNDVLVAYGELVNV---DGFFGVKM 544


>gi|85058546|ref|YP_454248.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
 gi|84779066|dbj|BAE73843.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
          Length = 304

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           VDN+  P + ++    + +   FD    +PV ++ +L +    ++ L NL  G V  L +
Sbjct: 204 VDNVIAPSNEETQP--QHTLPLFDW-SRVPVTVEFVLEANSYPLAELDNLQPGTVFDLSE 260

Query: 107 RVGESVDITINNQKIAKGEITIMEED 132
            V +++ I +N Q +  GE+  +E++
Sbjct: 261 NVEKNIKIFLNQQLVGHGELVTLEDE 286


>gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
          Length = 327

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN-QKIAKGEITIM 129
           LI    + M+ +LG   + + + VNL  GD+I LD++V + +++ + N +K A   +   
Sbjct: 252 LIDRAQIPMKAVLGHSRISVGDFVNLQLGDIIRLDRKVDDELEVYVGNIKKFAA--LPGY 309

Query: 130 EEDDTHFGVRVIEILNAQ 147
            ED   + +R+ E++  +
Sbjct: 310 SED--KYAIRITEVIKEE 325


>gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans
           ISDg]
 gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans
           ISDg]
          Length = 325

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           IPVK   +LG   + ++ L+N+ KGD+I LD+++ + + + + N K
Sbjct: 258 IPVKA--VLGKSSISLNELINMQKGDIIKLDRKIDDELSVYVGNIK 301


>gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 325

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +++IP+KM   L    + +S L+ L +GDV  +  ++G+ V++ ++  +   GE+
Sbjct: 256 VLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPI--QIGDGVEVLMDEHRFYYGEM 308


>gi|289433976|ref|YP_003463848.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|315301943|ref|ZP_07872944.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|289170220|emb|CBH26760.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313629685|gb|EFR97817.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|313639060|gb|EFS04047.1| conserved domain protein [Listeria seeligeri FSL S4-171]
          Length = 78

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           NIP+++   LG     I++L+++ KG V  L+  V   V ITI+ + I  GE  I+ +D 
Sbjct: 6   NIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGE--ILTKDG 63

Query: 134 THF 136
             F
Sbjct: 64  KMF 66


>gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
 gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
          Length = 323

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 32/52 (61%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           +  ++N+ V +Q+ LG   + + +L+NL  GD + LD +V + +D+ I  ++
Sbjct: 249 YQHVLNVMVNLQVCLGHMHIPLRDLINLRVGDTLLLDTKVDKPLDVKIEKKQ 300


>gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 329

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 34/50 (68%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           D I N  V +++++G+  + + +L++  KGDVI ++KR  + +++ IN++
Sbjct: 250 DKISNTYVPLKVVIGTSKITVRDLLSFDKGDVIEINKRYKDPIEVKINDE 299


>gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814]
 gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica
           ATCC 49814]
          Length = 80

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + +++ ++LG   + +  L+ + +G VI LD    + V I  NN  IA+GE+ I
Sbjct: 4   VEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVI 57


>gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum
           ferrodiazotrophum]
          Length = 341

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 30/132 (22%)

Query: 8   ISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS-----SDSNNIL 62
           +SYI+  +        NP Q + + SPT     L  + D+D    P+      S    I 
Sbjct: 180 VSYIRSEI--------NP-QFSAIVSPTEMVIALTYRLDIDGQGRPVYICIPYSTIEPIK 230

Query: 63  EK-----STDNFDL-----------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           EK      +D +++           I ++P+K+   LG+   ++S ++    GD+ITLD+
Sbjct: 231 EKLYTGFQSDQYEVDHRWILRLRQQIDSVPIKIVAELGTTKARLSEVLAWKPGDMITLDQ 290

Query: 107 RVGESVDITINN 118
            V + + IT+  
Sbjct: 291 YVDDPIKITVEK 302


>gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110]
 gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110]
          Length = 80

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V + ++LG+  M I  ++ LS+G +I LD    + V +  NN  +A G + +
Sbjct: 9   VDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLV 60


>gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 332

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+  Q  LGS  + +   + L  GD+I LDK   E VDI I+ +   +G   I    + 
Sbjct: 260 IPLTAQ--LGSTTITVKEFLELEIGDIIMLDKHFKEPVDIIIDKKVKFRGIPGI---KNN 314

Query: 135 HFGVRVIEIL 144
            + VR+ E++
Sbjct: 315 KYSVRITEVI 324


>gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
           1873]
 gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
           1873]
          Length = 331

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 62  LEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           LE+S +     MNI  + M  +LGS  + +   + LS GDV+TLD      V + + ++ 
Sbjct: 243 LEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDVVTLDNLTSSPVKMMVGDKP 302

Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
              G+  I+ ++    GV++++I++
Sbjct: 303 YLLGKPGIIGKNR---GVQILDIID 324


>gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 344

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 59  NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           N+ + + TD  DL   +  +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ 
Sbjct: 257 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 316

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
           +N ++I +GE+  + +     GVR++
Sbjct: 317 VNGRRIGRGELVSIGDG---LGVRLL 339


>gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 328

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
            IP+K  +++G   + + +L+ LS GDVI L++ + + +DI I N+
Sbjct: 258 TIPIK--VVMGKTVITVRDLLALSVGDVIPLNRNISQELDIVIGNR 301


>gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 332

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 34/58 (58%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           I   PV++  ++G   + + +L+ L  GDV+ L +RV + +D+ +++Q   K +  ++
Sbjct: 255 IERAPVELSAVVGESEITVQDLLQLQVGDVVPLSRRVTQDLDLYVSDQLKFKAQAGVL 312


>gi|258622511|ref|ZP_05717533.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|258624666|ref|ZP_05719601.1| flagellar motor switch protein [Vibrio mimicus VM603]
 gi|262173377|ref|ZP_06041054.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
 gi|258583058|gb|EEW07872.1| flagellar motor switch protein [Vibrio mimicus VM603]
 gi|258585211|gb|EEW09938.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|261890735|gb|EEY36722.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
          Length = 123

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
               IPV + + + S  + +  L+   +G VI LDK  GE +D+ +N   +   EI I+ 
Sbjct: 43  FFKGIPVVVTLEVASKEITLGELMKAGEGTVIELDKLNGEPLDVKVNGSLMGHAEIVIVN 102

Query: 131 EDDTHFGVRVIEILNA 146
           +    +G+ + ++L++
Sbjct: 103 D---KYGLHLTDVLSS 115


>gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
           1]
 gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
           1]
          Length = 325

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V++  +LGS  +Q+ + +   +GDVI LD+RV   + + +  + + K +  + +      
Sbjct: 256 VELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKPMFKIQAGVSK------ 309

Query: 137 GVRVIEILNAQ 147
           G R ++ L+A+
Sbjct: 310 GRRAVQFLHAE 320


>gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 301

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 59  NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           N+ + + TD  DL   +  +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ 
Sbjct: 214 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 273

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
           +N ++I +GE+  + +     GVR++
Sbjct: 274 VNGRRIGRGELVSIGDG---LGVRLL 296


>gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 301

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 59  NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           N+ + + TD  DL   +  +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ 
Sbjct: 214 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 273

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
           +N ++I +GE+  + +     GVR++
Sbjct: 274 VNGRRIGRGELVSIGDG---LGVRLL 296


>gi|89069802|ref|ZP_01157137.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
 gi|89044603|gb|EAR50719.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
          Length = 96

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 34/55 (61%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +  +P+++ I++G     +  L+ L +  V+ LD+ V + V++ + ++ IA+GE+
Sbjct: 17  LRAVPIEITIVVGRARPSVGELLTLDQNAVLPLDRGVDDPVELYVGDRLIARGEL 71


>gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 351

 Score = 36.2 bits (82), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 59  NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           N+ + + TD  DL   +  +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ 
Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
           +N ++I +GE+  + +     GVR++
Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346


>gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
 gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
          Length = 333

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 63  EKSTDNFDL------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           EK TD+ D       + + PV M+++LG   M + N + L  GD+I LD +  + + +++
Sbjct: 243 EKETDHTDSGKLEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSV 302


>gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 546

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   +  FGV+V
Sbjct: 515 EPIRIYVNDVLVAYGELVNV---NGFFGVKV 542


>gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 351

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 59  NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           N+ + + TD  DL   +  +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ 
Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
           +N ++I +GE+  + +     GVR++
Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346


>gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
 gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
          Length = 545

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + 
Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           E + I +N+  +A GE+  +   +  FGV+V
Sbjct: 514 EPIRIYVNDVLVAYGELVNV---NGFFGVKV 541


>gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 351

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 59  NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           N+ + + TD  DL   +  +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ 
Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
           +N ++I +GE+  + +     GVR++
Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346


>gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 351

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 59  NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           N+ + + TD  DL   +  +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ 
Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
           +N ++I +GE+  + +     GVR++
Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346


>gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
 gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
          Length = 331

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 63  EKSTDNFDL------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           EK TD+ D       + + PV M+++LG   M + N + L  GD+I LD +  + + +++
Sbjct: 242 EKETDHTDSGKIEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLILSV 301


>gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 332

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           I  + V +++ LG   + +  L+ L KGDVI L + + E +DI +   K   G
Sbjct: 253 IERVRVPLKVFLGQTQITVRELLGLEKGDVIPLQQHIQEPLDIYVGKFKKFAG 305


>gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14]
 gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter
           hamburgensis X14]
          Length = 87

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M +  ++ LS+G +I LD    + V I  NN  +A G + +
Sbjct: 14  VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVVV 67


>gi|50121008|ref|YP_050175.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560423|gb|AAS20383.1| HrcQ [Pectobacterium atrosepticum]
 gi|49611534|emb|CAG74982.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 405

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
            VS P   +++++   + D  +   + DS+N+ E        +  +P+ + I  GS  M 
Sbjct: 279 TVSMPATATDIMLADPNSDTSAFEFTLDSDNVTES-------LPPLPITLHIRCGSLTMT 331

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           ++ L +L+ G V+TL   V     +   +  +A G++  +E
Sbjct: 332 LAELQHLASGSVLTLRDVVPGQAWLYHGDIALASGDLVDVE 372


>gi|238759390|ref|ZP_04620555.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
 gi|238702417|gb|EEP94969.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
          Length = 311

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           ++++ + E + +    + E    +FD +  + VK+  +LG   + +  L ++  G V +L
Sbjct: 207 DNIEEVEETVPTLDEVLPENLPSHFD-VTKLTVKLTFVLGHSEIPLEELAHIQPGAVYSL 265

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
                  V +  N Q +A+GE+  +  DD   G+ V  +
Sbjct: 266 GADKDREVKVYANKQLVAEGELVYI-GDDEELGLEVTRL 303


>gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
           49176]
 gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
           49176]
          Length = 326

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           IP++   +LG   + +++ VNL  GDV+ L+ +V + +D+ + N K  K 
Sbjct: 258 IPIRA--VLGKSVVSVNDFVNLQPGDVVRLNAKVDDELDVFVGNMKKFKA 305


>gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
           27405]
 gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           2360]
 gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
 gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
           27405]
 gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           2360]
 gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
 gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           1313]
          Length = 328

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           V ++ ILG   +Q+++ + L  GDVITLD  V  ++D+ + +
Sbjct: 259 VPVRAILGRATIQVADFLELQPGDVITLDSNVNGNLDVLVGD 300


>gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
 gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
 gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
 gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
 gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
 gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
 gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 332

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+  Q  LGS  + +   ++   GD+I LDK   E VDI I+ +   +G   I    + 
Sbjct: 260 IPLTAQ--LGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIIDKKVKFRGIPGI---KNN 314

Query: 135 HFGVRVIEIL 144
            + VR+ E++
Sbjct: 315 KYSVRITEVI 324


>gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
           DSM 16646]
 gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
           DSM 16646]
          Length = 331

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           N+  +++  +G   + +   ++L  GDVI LDK +   VD+ + ++   KG   IM + +
Sbjct: 256 NVNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEVDVYVYDKLKYKG---IMGKRN 312

Query: 134 THFGVRV 140
             F VR+
Sbjct: 313 GRFAVRI 319


>gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
 gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
          Length = 329

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 32/57 (56%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           +MN  V++  +LG   +   +L++L  GD + LD+   E + + +   K+ KG++ +
Sbjct: 255 LMNSTVEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEPLSVMVGENKVFKGQVGV 311


>gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
           Ice1]
 gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
           Ice1]
          Length = 331

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 58  SNNILEKSTDNFDLIMN----IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           SN   E++T+  + + N      V + ++LG   + +S L++L  GDVI LD R    ++
Sbjct: 235 SNAAKERTTEQLEALRNRLERALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSELE 294

Query: 114 ITINNQ 119
           + I  +
Sbjct: 295 VLIGQR 300


>gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
 gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
          Length = 315

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           K  +  I+E  S + +N L ++ +       IP+ +++ILG   +Q+ +L+N+  GD + 
Sbjct: 224 KEVLKGITELRSPEVSNKLLQALEE------IPLNLEVILGRQKIQLGDLLNMKVGDTMI 277

Query: 104 LDKRVGESVDITINN 118
           L K + E V++ ++ 
Sbjct: 278 LQKGLREPVEVRVSG 292


>gi|313634375|gb|EFS00970.1| conserved domain protein [Listeria seeligeri FSL N1-067]
          Length = 78

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IP+++   LG     I++L+++ KG V  L+  V   V ITI+ + I  GE  I+ +D 
Sbjct: 6   SIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGE--ILTKDG 63

Query: 134 THF 136
             F
Sbjct: 64  KMF 66


>gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
 gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
          Length = 331

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V++  ILG+  + +   +NL+ GDV+TL ++    V + + ++    G+  ++   D + 
Sbjct: 259 VELTAILGTVDVTVQEFLNLNVGDVLTLKEKTTSPVKLMVEDKVYYYGKPGVI---DKNM 315

Query: 137 GVRVIEILN 145
           GV +++IL+
Sbjct: 316 GVEILDILD 324


>gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
           14580]
 gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
           14580]
 gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2]
 gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580]
 gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2]
          Length = 332

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           KS +   L   IP+  +  LGS  + I   +NL  GD ITLDK V E + + + ++
Sbjct: 249 KSIEKRILTAQIPIVAE--LGSSELTIEEFLNLEIGDCITLDKSVAEPLTVLVGDK 302


>gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
           BON]
 gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
           BON]
          Length = 335

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 13/70 (18%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           S N L K  +N    + IP++   ILG   + I + + LS GD+I LD    ESVD   N
Sbjct: 250 SFNTLRKRIEN----VQIPIRA--ILGESTISIGDFMQLSPGDIIQLD----ESVD---N 296

Query: 118 NQKIAKGEIT 127
           + K+  G+IT
Sbjct: 297 HIKVMVGDIT 306


>gi|16799781|ref|NP_470049.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|16413158|emb|CAC95938.1| lin0706 [Listeria innocua Clip11262]
          Length = 78

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            IP+++   LG     + +L+++ KG V  L+   G  V ITI+ + I  GEI
Sbjct: 6   TIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTGNVVKITISGKCIGYGEI 58


>gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 83

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++  L+ ++ V++++ L +       L+N+ +GD+I L+K + + + + + N   A G
Sbjct: 3   TIEDLKLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIG 62

Query: 125 EITIMEEDDTHFGVRVIEIL 144
           E+T + E    +G+R+++++
Sbjct: 63  EMTNINE---KYGIRIVDLI 79


>gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255]
 gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 97

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M +  ++ LS+G +I LD    + V I  NN  +A G + +
Sbjct: 24  VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVMV 77


>gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
 gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
          Length = 334

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++   +G   + +++L+ L  GDVI LDK+  E VDI I      +G   +    + H
Sbjct: 258 PLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVDIRIGKNVKFQGVAGV---SNKH 314

Query: 136 FGVRVIEILN 145
             V++ ++++
Sbjct: 315 MAVKITDVIS 324


>gi|255018475|ref|ZP_05290601.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-515]
          Length = 64

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           ++++ G+  +++   ++  + DVI L + + E + + +N   I KG   I+   D HFG+
Sbjct: 1   LEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVDDHFGI 57

Query: 139 RVIEILN 145
           ++ E++ 
Sbjct: 58  QMTELVR 64


>gi|116626496|ref|YP_828652.1| surface presentation of antigens (SPOA) protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229658|gb|ABJ88367.1| surface presentation of antigens (SPOA) protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 82

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++PV +++ L    M   +++ L +G VI   +  GE++DI I       GEI ++E   
Sbjct: 12  DVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSGEIVVIE--- 68

Query: 134 THFGVRV 140
              GVR+
Sbjct: 69  NTLGVRI 75


>gi|116872087|ref|YP_848868.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|315281359|ref|ZP_07869999.1| conserved domain protein [Listeria marthii FSL S4-120]
 gi|116740965|emb|CAK20085.1| flagellar motor switch protein, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|313614998|gb|EFR88502.1| conserved domain protein [Listeria marthii FSL S4-120]
          Length = 78

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           NIP+++   LG     + +L+++ KG V  L+      V ITI+ + I  GEI
Sbjct: 6   NIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEI 58


>gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
 gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8]
 gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
 gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8]
          Length = 372

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSK 98
           ML Q      + + ISS +  +  +  D ++  +    V +   LG   + ++ L  L +
Sbjct: 228 MLEQMLGRSGMEQWISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQE 287

Query: 99  GDVITLDKRVGESVDITINNQK 120
           GDVI LD+   + + + +N ++
Sbjct: 288 GDVIPLDRETDDPIKVFVNGEQ 309


>gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM
           2228]
          Length = 335

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 27/44 (61%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           V++  +LGS  + + + + L  GDV+ LDK+V E+ ++ I   +
Sbjct: 259 VEVDAVLGSTEITVEDFLYLQPGDVVRLDKKVEENAELKIGRSR 302


>gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
 gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
 gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
          Length = 331

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 28/40 (70%)

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           ++ILG+  + + + +NL+ GDV+TL+++  + +++ I  +
Sbjct: 262 EVILGNASVTVEDFLNLTVGDVVTLERKFEDPLEVVIEER 301


>gi|269302491|gb|ACZ32591.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 371

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +S  + L+ G +++L       VDI ++  K+ +GEI  + +     G+RV+E+
Sbjct: 319 LAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LGIRVLEV 371


>gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
 gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
          Length = 327

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           G   + +   ++L  GDV+ LD+R GE +D+ +   K  + +  ++     H  V++
Sbjct: 265 GETRLSVQEFLDLEVGDVLVLDRRFGEDLDVYVGKIKRYRAQPGLL---GRHLAVQI 318


>gi|15618614|ref|NP_224900.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
 gi|15836236|ref|NP_300760.1| type III secretion system protein [Chlamydophila pneumoniae J138]
 gi|16752336|ref|NP_444594.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
 gi|33242062|ref|NP_877003.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
 gi|4377007|gb|AAD18843.1| Flagellar Motor Switch Domain/YscQ family [Chlamydophila pneumoniae
           CWL029]
 gi|6672034|dbj|BAA88654.1| flagellar motor switch domain/YscQ family [Chlamydophila
           pneumoniae]
 gi|8163350|gb|AAF73618.1| type III secretion translocase SctQ [Chlamydophila pneumoniae AR39]
 gi|8979076|dbj|BAA98911.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae
           J138]
 gi|33236572|gb|AAP98660.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183]
          Length = 371

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +S  + L+ G +++L       VDI ++  K+ +GEI  + +     G+RV+E+
Sbjct: 319 LAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LGIRVLEV 371


>gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
 gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
          Length = 367

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           LI    V  + ILG   + ++  +NL +GD++ LD+   +   +TI+ +++   E+ +
Sbjct: 253 LIGRAEVLYEAILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGL 310


>gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
 gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
          Length = 329

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           +Q +LG   M +  +++L  GD++TL  +V + + + + + K   GEI I++
Sbjct: 262 LQAVLGESTMTLREILDLEIGDILTLSTKVRDPMVLQVGDMKKYYGEIGIID 313


>gi|312971677|ref|ZP_07785852.1| hypothetical protein EC182770_2188 [Escherichia coli 1827-70]
 gi|310336274|gb|EFQ01474.1| hypothetical protein EC182770_2188 [Escherichia coli 1827-70]
          Length = 493

 Score = 33.9 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNI---SEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           D+P +D  +S          Q +D +++   S PI  D NN ++ +    +  + +   M
Sbjct: 274 DSPNEDNLISYVKEGLSNFSQTDDSNDLLAFSLPIKIDDNNWIDLTVAKVNTEIELTPDM 333

Query: 80  QIILGSCCMQISNLVN 95
           QII  S C+ I NL++
Sbjct: 334 QIIERSGCLSIGNLLD 349


>gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
 gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
          Length = 368

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           LI    V  + ILG   + ++  +NL +GD++ LD+   +   +TI+ +++   E+ +
Sbjct: 254 LIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGL 311


>gi|222082188|ref|YP_002541553.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Agrobacterium radiobacter K84]
 gi|221726867|gb|ACM29956.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Agrobacterium radiobacter K84]
          Length = 336

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           I +IPVK+   +    + +S L ++++G V  LD+   ++V+I    + I +GEI  ++
Sbjct: 266 IGDIPVKLVFDIARIELPLSELESIAEGHVFPLDRPKQDAVEIVTQGRIIGRGEIVTLD 324


Searching..................................................done


Results from round 2




>gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040365|gb|ACT57161.1| putative flagellar motor switch protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 147

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
           MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN
Sbjct: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK
Sbjct: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
           IAKGEITIMEEDDTHFGVRVIEILNAQ
Sbjct: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147


>gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP]
          Length = 366

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 12/156 (7%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQD-TNVSSPTNNSEMLIQKNDVDNISE-PISSDS 58
            +KK+ ++ +    +E +      P  D T+ S PT+      ++ +   ++  P+  + 
Sbjct: 207 FVKKLYELIFGTPTVEQKQASAPAPGTDQTSASKPTSFVPPTPKREEKQAVAARPVQFED 266

Query: 59  NNILEKSTDN-------FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
               ++ ++          L+ ++P+ + + LG   + +  ++ L  G +I LDK  GE 
Sbjct: 267 FGRTQQPSEKPQILDERLQLLFDVPLNVTVELGRTKLALKEIMELGVGSLIELDKLTGEP 326

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           VDI +NN+ IA+GE+ +++E   +FGVR+ EI+N +
Sbjct: 327 VDIYVNNKLIARGEVVVIDE---NFGVRITEIVNPK 359


>gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4]
          Length = 388

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 13/145 (8%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSP--TNNSEMLIQKNDVDNISEPI--------SSDSNN 60
           I++     SM    P+Q+T    P  T       Q     ++S+P+        S     
Sbjct: 238 IEEEPPKPSMATSTPVQETQSQQPFTTYQQPQAPQHFGGQHLSQPVNVQPAEFASFGQPA 297

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           + E    N +++++IP+ + + LG     +  ++ LS+G +I LDK  GE VDI +NN+ 
Sbjct: 298 LQESEARNLNMLLDIPLSVTVELGRTKRSVKEILELSQGSIIELDKLAGEPVDILVNNRL 357

Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145
           IAKGE+ +++E   +FGVR+ +I++
Sbjct: 358 IAKGEVVVIDE---NFGVRLTDIVS 379


>gi|330814982|ref|YP_004358687.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
 gi|327367375|gb|AEA58731.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
          Length = 149

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D  + D   +    N + +        + +P+S  ++N    + ++ D+I++IPVKM + 
Sbjct: 23  DEAMDDWAAALAEQNDQPIASGATGAGVFQPLSKAASN---STHNDIDMILDIPVKMTVE 79

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 80  LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 136

Query: 143 ILNA 146
           I+  
Sbjct: 137 IITP 140


>gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605]
 gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206]
 gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15]
 gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86]
 gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605]
 gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206]
          Length = 137

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDMWAEALSEQKSTSGKSAADAMFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83]
          Length = 137

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMGDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74]
          Length = 134

 Score =  131 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 1   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 61  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 118 RITDIITP 125


>gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227]
 gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227]
          Length = 137

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863]
 gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
 gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v]
          Length = 137

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   LNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
 gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
          Length = 134

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++  + + S             +  +  + DLIM+IPVK
Sbjct: 1   MNNPADDNNGAMDDLWAEALSEQKSISSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 61  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 118 RITDIITP 125


>gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
 gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
 gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
 gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
          Length = 137

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++   ++ S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTNSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G]
 gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180]
 gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357]
          Length = 134

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 1   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 61  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 118 RITDIITP 125


>gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718]
 gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718]
          Length = 137

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++  + + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSISSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
           Nor1]
 gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
           Nor1]
          Length = 376

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTD--NFDLIM 73
                +  P ++TN +     + +      + N++ +P+          +T   N +LIM
Sbjct: 239 STPQPVMAPARETNFAQAQQAAALPKTHQPLTNVTVQPVQFAPLKPTTPTTSDTNINLIM 298

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P+++ + LG     I  ++ L  G V+ LDK  GE VDI +N + IAKGE+ +++E  
Sbjct: 299 DVPLQVTVELGRTRKLIREILELGPGSVVELDKLAGEPVDILVNGKLIAKGEVVVIDE-- 356

Query: 134 THFGVRVIEILNA 146
            +FGVR+ EI++ 
Sbjct: 357 -NFGVRITEIVSP 368


>gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7
           EDL933]
 gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           Sakai]
 gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS]
 gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC869]
 gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC508]
 gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
 gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A]
 gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22]
 gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019]
 gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171]
 gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
 gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11]
 gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1]
 gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a]
 gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989]
 gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B]
 gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O103:H2 str. 12009]
 gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O26:H11 str. 11368]
 gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O111:H- str. 11128]
 gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           CB9615]
 gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088]
 gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
 gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
 gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
 gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
 gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
 gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
 gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
 gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
 gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
 gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
 gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
 gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
 gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W]
 gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
 gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143]
 gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271]
 gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280]
 gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591]
 gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299]
 gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing,
           enabling rotation and determining its direction
           [Escherichia coli O157:H7 str. EDL933]
 gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           Sakai]
 gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS]
 gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
 gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC869]
 gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC508]
 gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A]
 gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22]
 gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019]
 gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171]
 gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
 gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11]
 gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia
           coli 55989]
 gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia
           coli IAI1]
 gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia
           coli ED1a]
 gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. TW14359]
 gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O26:H11 str. 11368]
 gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O103:H2 str. 12009]
 gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O111:H- str. 11128]
 gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042]
 gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088]
 gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
 gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
 gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
 gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
 gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
 gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
 gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
 gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
 gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
 gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
 gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
 gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
 gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W]
 gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
 gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407]
 gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia
           coli W]
 gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1]
 gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC
           74-1112]
 gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B]
 gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           G5101]
 gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14]
 gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010]
 gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68]
 gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11]
 gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520]
 gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482]
 gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120]
 gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489]
 gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007]
 gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3]
 gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167]
 gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           1044]
 gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           1125]
 gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143]
 gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271]
 gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280]
 gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591]
 gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299]
 gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82]
 gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88]
          Length = 137

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185]
 gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185]
          Length = 137

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADTVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536]
 gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11]
 gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39]
 gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026]
 gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412]
 gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354]
 gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli
           FVEC1302]
 gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
 gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
 gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101]
 gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
 gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536]
 gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11]
 gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia
           coli IAI39]
 gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia
           coli UMN026]
 gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82]
 gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412]
 gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354]
 gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli
           FVEC1302]
 gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
 gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
 gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101]
 gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
 gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3]
 gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327]
 gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2]
 gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1]
          Length = 137

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
 gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1]
 gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88]
 gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
 gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
 gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
 gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1]
 gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia
           coli S88]
 gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
 gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034]
 gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
 gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146]
 gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3]
 gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252]
 gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263]
          Length = 137

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGALQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
 gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
          Length = 137

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++   +N S             +  +  + DLIM+IPVK
Sbjct: 4   LNNPADDNNGAMDDLWAEALSEQKSTNNKSAAEAMFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ L+   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. W3110]
 gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN
 gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli]
 gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia
           coli str. K12 substr. W3110]
 gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1]
 gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1]
          Length = 137

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
 gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
          Length = 137

 Score =  131 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALNEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
           Rt17-B1]
          Length = 357

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
            +KK+ ++ + K   +  +         +  S      +  +    V          +  
Sbjct: 207 FVKKMYEMIFGKTEKQTATSQTQKTPTQSVPSPSIPKEKTAVAAKPVQFEDFGKVPSAQE 266

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
             +   +   L+ +IP+ + + LG   + +  ++ L  G +I LDK  GE VDI +NN+ 
Sbjct: 267 QTQVIDERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIELDKLTGEPVDIYVNNKL 326

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
           IA+GE+ +++E   +FGVR+ EI++ +
Sbjct: 327 IARGEVVVIDE---NFGVRITEIVSPK 350


>gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
           493-89]
 gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
           H 2687]
          Length = 137

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74]
          Length = 134

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 1   MNNPADDNNGAMDDLWAEALSEQESTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 61  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 118 RITDIITP 125


>gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
 gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
          Length = 138

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNI 75
           S   ++P   TN  S    +E L Q+   ++ S    + +N   + + +   + +LIM+I
Sbjct: 2   SEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSDINLIMDI 61

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           PV++ + LG   M I  L++LS+G V++LD   GE +DI IN   IA+GE+ ++ +   +
Sbjct: 62  PVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---N 118

Query: 136 FGVRVIEILNA 146
           +G+R+ +I+  
Sbjct: 119 YGIRITDIITP 129


>gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905]
          Length = 137

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70]
 gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71]
          Length = 134

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++      S             +  +  + DLIM+IPVK
Sbjct: 1   MNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 61  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 118 RITDIITP 125


>gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
 gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
          Length = 137

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQESTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073]
 gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972]
 gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
 gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
 gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073]
 gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972]
 gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
 gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
 gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972]
 gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1]
          Length = 137

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSGKSATDAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
 gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
          Length = 138

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNI 75
           S   ++P   TN  S    +E L Q+   ++ S    +  N   +   +   + D+IM+I
Sbjct: 2   SEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFDNFDGQNPLNQLSDIDMIMDI 61

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           PV++ + LG   M I  L++LS+G V++LD   GE +DI IN   IA+GE+ ++ +   +
Sbjct: 62  PVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---N 118

Query: 136 FGVRVIEILNA 146
           +G+R+ +I+  
Sbjct: 119 YGIRITDIITP 129


>gi|206561842|ref|YP_002232607.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           J2315]
 gi|198037884|emb|CAR53828.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           J2315]
          Length = 151

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 6/121 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           + D   +    N + +        + +P+S  + +    + ++ ++I++IPVKM + LG 
Sbjct: 28  MDDWAAALAEQNQQPVAAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 84

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 85  TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 141

Query: 146 A 146
            
Sbjct: 142 P 142


>gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
 gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
           2457T]
 gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
 gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
 gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
           2457T]
 gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
 gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017]
 gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str.
           2457T]
 gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71]
 gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671]
 gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218]
 gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272]
 gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304]
 gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227]
          Length = 137

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|238025699|ref|YP_002909930.1| flagellar motor switch protein FliN [Burkholderia glumae BGR1]
 gi|237874893|gb|ACR27226.1| Flagellar motor switch protein FliN [Burkholderia glumae BGR1]
          Length = 144

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           ++ L D   +    N + +        + +P+S  ++N    + ++ D+I++IPVKM + 
Sbjct: 18  ESSLDDWAAALAEQNDQPIASGAGGAGVFQPLSKAASNA---THNDIDMILDIPVKMTVE 74

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 75  LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 131

Query: 143 ILNA 146
           I+  
Sbjct: 132 IITP 135


>gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
 gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
          Length = 432

 Score =  129 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 6/140 (4%)

Query: 9   SYIKDNLEGRSMHID-NPLQDTNVSSPTNNSEMLIQKNDVDNISEPI--SSDSNNILEKS 65
           +Y +  +   S   +  P Q+    S   +           N+      S +  ++ +  
Sbjct: 287 AYSQPVMNQASSPQNYIPAQNQAQQSGPQHFGGSYANGVQPNVQPAAFSSFEPYHMQDHE 346

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N D++++IP+++ + LG     +  ++ LS G +I LDK  GE VDI +NN+ IA+GE
Sbjct: 347 TKNLDMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNNRLIAQGE 406

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + +++E   +FGVRV +I++
Sbjct: 407 VVVIDE---NFGVRVTDIIS 423


>gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
 gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
          Length = 410

 Score =  129 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 7/137 (5%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI----SEPISSDSNNILEKSTDN 68
            + +        P+Q      P   ++          +    ++  S DSN I +    N
Sbjct: 268 PSEQPVYQQQSAPMQQPIYQEPQQFAQPARPAQPAQPVNVQQAQFASFDSNVISQSEARN 327

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            +++++IP+++ + LG     +  ++ LS G +I LDK  GE VDI +N++ IAKGE+ +
Sbjct: 328 LNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVV 387

Query: 129 MEEDDTHFGVRVIEILN 145
           ++E   +FGVR+ ++L+
Sbjct: 388 IDE---NFGVRITDVLS 401


>gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1]
 gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus
           WK1]
          Length = 383

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 71/128 (55%), Gaps = 3/128 (2%)

Query: 18  RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
           ++    +  Q T   +P +     +Q+          S +   + E  + N D++++IP+
Sbjct: 250 QTKPAPSSAQQTQKEAPQHFGTGAVQQPVNVQPVAFASFEPAPLPEAESRNLDMLLDIPL 309

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           ++ + LG     + ++++LS G +I LDK  GE VDI +NN+ IAKGE+ +++E   +FG
Sbjct: 310 QVTVELGRTKRSVQDILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NFG 366

Query: 138 VRVIEILN 145
           VRV  I++
Sbjct: 367 VRVTSIIS 374


>gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
 gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
          Length = 393

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           E  S   D P            +   IQ  D       +  D+  +      N +L+ ++
Sbjct: 264 EAASRSTDEPSAGRADKDRDGATARHIQTADF------VEFDAPPLAATEARNLELLFDV 317

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ + LG     +  ++ LS G +I LDK  GE VD+ +NN+ IAKGE+ +++E   +
Sbjct: 318 PLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDE---N 374

Query: 136 FGVRVIEILN 145
           FGVR+ +I++
Sbjct: 375 FGVRITDIIS 384


>gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs]
 gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alkaliphilus oremlandii OhILAs]
          Length = 385

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
           KD +  R M  D P  D   +     +    +  ++  + +  + D +++     +N  L
Sbjct: 247 KDTMHPREMSYDTPNYDHRANFSNEAAATRNEPVNIRPV-QFQAFDDDSVKGVMPENISL 305

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I ++P+K+ + LG    +IS ++    G +I LDK VGE +DI +N Q +A GE+ +++E
Sbjct: 306 IQDVPLKITVELGRTVKKISEILEFGPGTIIELDKLVGEPLDILVNGQYVANGEVVVIDE 365

Query: 132 DDTHFGVRVIEILNA 146
              ++G+RV +I+N 
Sbjct: 366 ---NYGIRVTDIVNP 377


>gi|170698079|ref|ZP_02889160.1| flagellar motor switch protein FliN [Burkholderia ambifaria
           IOP40-10]
 gi|170137040|gb|EDT05287.1| flagellar motor switch protein FliN [Burkholderia ambifaria
           IOP40-10]
          Length = 163

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           L D   +    N + +        + +P+S  + +    + ++ ++I++IPVKM + LG 
Sbjct: 40  LDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 96

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 97  TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153

Query: 146 A 146
            
Sbjct: 154 P 154


>gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus curdlanolyticus YK9]
 gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus curdlanolyticus YK9]
          Length = 411

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
            + M+   P+       P    ++  +  +V  + +  +      ++    N +L+++IP
Sbjct: 278 QQPMYAQQPMYAQPPQGPNTYGQVPGRNVNVQPV-QFANFQGAPYVQADDTNLNLLLDIP 336

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           +K+ + LG    QI +++ LS+G +I LDK  GE VDI +NN+ IAKGE+ +++E   +F
Sbjct: 337 LKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NF 393

Query: 137 GVRVIEILN 145
           GVRV +I++
Sbjct: 394 GVRVTDIVS 402


>gi|172059106|ref|YP_001806758.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
 gi|171991623|gb|ACB62542.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
          Length = 163

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           L D   +    N + +        + +P+S  + +    + ++ ++I++IPVKM + LG 
Sbjct: 40  LDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 96

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 97  TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153

Query: 146 A 146
            
Sbjct: 154 P 154


>gi|53723901|ref|YP_104281.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           23344]
 gi|52427324|gb|AAU47917.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           23344]
          Length = 124

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 6/121 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           + D   +    N + +        +  P+S  + +    + ++ DLI++IPVKM + LG 
Sbjct: 1   MDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVELGR 57

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 58  TKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 114

Query: 146 A 146
            
Sbjct: 115 P 115


>gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3]
 gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. C56-T3]
          Length = 393

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           E  S   D P            +   IQ  D       +  D+  +      N +L+ ++
Sbjct: 264 EAASRSTDEPPAGRADKERDGATARHIQTADF------VEFDAPPLAATEARNLELLFDV 317

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ + LG     +  ++ LS G +I LDK  GE VD+ +NN+ IAKGE+ +++E   +
Sbjct: 318 PLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDE---N 374

Query: 136 FGVRVIEILN 145
           FGVR+ +I++
Sbjct: 375 FGVRITDIIS 384


>gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
           TCF52B]
 gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
           TCF52B]
          Length = 365

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 10/154 (6%)

Query: 1   MIKKVSKISY---IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD 57
            +KK+  + +    ++ +E  +    +P+   N +  +  +   ++KN V        S 
Sbjct: 208 FVKKLYSMIFESEKQEKVESSAAGTSSPVSTQNYAEHSATTTKNVEKNPVSVSPVQFQSF 267

Query: 58  SNNILEKST----DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            +    KST    D    +++IP+ + + LG   + +  ++ LS G +I LDK  GE VD
Sbjct: 268 ESGGTVKSTGEIPDRIQALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVD 327

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           I +N + IA+GE+ +++E   +FGVR+ EI+  Q
Sbjct: 328 IIVNGKLIARGEVVVIDE---NFGVRITEIVTPQ 358


>gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
 gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
          Length = 408

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 10  YIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69
           Y +   +   M           +     +     +      +   + +   + E  T N 
Sbjct: 267 YGQGTAQYSGMETQTQRPAAQAAPQHLGAHYPGGQPPQVQPAVFSNFEPQQLQESETKNL 326

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           +++++IP+++ + LG     + +++ LS G +I LDK  GE VDI +N++ IAKGE+ ++
Sbjct: 327 NMLLDIPLQVTVELGRTKRSVKDILELSAGSIIELDKLAGEPVDILVNSRLIAKGEVVVI 386

Query: 130 EEDDTHFGVRVIEILN 145
           EE   +FGVRV +I++
Sbjct: 387 EE---NFGVRVTDIIS 399


>gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61]
 gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC52]
 gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC61]
 gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC52]
          Length = 393

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           E  S   D P            +   IQ  D       +  D+  +      N +L+ ++
Sbjct: 264 EAASRSTDEPPAGRADKERDGATARHIQTADF------VEFDAPPLAATEARNLELLFDV 317

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ + LG     +  ++ LS G +I LDK  GE VD+ +NN+ IAKGE+ +++E   +
Sbjct: 318 PLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDE---N 374

Query: 136 FGVRVIEILN 145
           FGVR+ +I++
Sbjct: 375 FGVRITDIIS 384


>gi|83721171|ref|YP_440588.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|83654996|gb|ABC39059.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
          Length = 143

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           +  + D   +    N + +        +  P+S  + +    + ++ D+I++IPVKM + 
Sbjct: 17  EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAAS---STHNDIDMILDIPVKMTVE 73

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 74  LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 130

Query: 143 ILNA 146
           I+  
Sbjct: 131 IITP 134


>gi|76810554|ref|YP_331657.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710b]
 gi|76580007|gb|ABA49482.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710b]
          Length = 143

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           +  + D   +    N + +        +  P+S  + +    + ++ DLI++IPVKM + 
Sbjct: 17  EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 73

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 74  LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 130

Query: 143 ILNA 146
           I+  
Sbjct: 131 IITP 134


>gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 415

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
           G+      P Q      P +  +   +  +V  + +  +  +    +   +N +L+M+IP
Sbjct: 282 GQQAPYGYPPQGQPYGEPHHYGQAPGRNLNVQPV-QFANLGNPAFNQVDENNLNLLMDIP 340

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           +K+ + LG    QI +++ LS+G +I LDK  GE VDI +NN+ IAKGE+ +++E   +F
Sbjct: 341 LKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NF 397

Query: 137 GVRVIEILN 145
           GVRV +I++
Sbjct: 398 GVRVTDIVS 406


>gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046]
 gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046]
          Length = 137

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   I++GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sibiricum 255-15]
 gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sibiricum 255-15]
          Length = 376

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           + P        P   +    +K  V          S    E    N  ++ ++P+ + + 
Sbjct: 249 EQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQFGQFSEVQQEGPPGNIGMLYDVPLNVTVE 308

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG     + +++ L++G +I LDK  GE VD+ +NN  IA GE+ ++EE   +FGVR+ E
Sbjct: 309 LGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLIATGEVVVIEE---NFGVRITE 365

Query: 143 ILNAQ 147
           I+N +
Sbjct: 366 IVNTK 370


>gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10]
 gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulolyticum H10]
          Length = 402

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 7/142 (4%)

Query: 9   SYIKDNLEGRSM-HIDNPLQDTNVSSPTNNS---EMLIQKNDVDNISEPISSDSNNILEK 64
           SYI+  L+      I  P+   ++ +   +    E   Q+  V+       +  + +   
Sbjct: 260 SYIEPPLQPVMQPQIPQPMMQQSMPNFGYDGVYQEPQRQRAPVNVQPAQFQAFDDGLSVT 319

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
              N  LIM++P+++ + LG     I +++    G VI LDK  GE VDI +N + IAKG
Sbjct: 320 EKKNISLIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKG 379

Query: 125 EITIMEEDDTHFGVRVIEILNA 146
           E+ +++E    FGVR+ +I++ 
Sbjct: 380 EVVVIDES---FGVRITDIIHP 398


>gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6]
          Length = 137

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI  N   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|67641903|ref|ZP_00440668.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
           4]
 gi|121599067|ref|YP_994774.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
 gi|124384349|ref|YP_001027841.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10229]
 gi|126449143|ref|YP_001082211.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10247]
 gi|167000455|ref|ZP_02266269.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
 gi|167717396|ref|ZP_02400632.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           DM98]
 gi|167736439|ref|ZP_02409213.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 14]
 gi|167813513|ref|ZP_02445193.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 91]
 gi|167822055|ref|ZP_02453526.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 9]
 gi|167843668|ref|ZP_02469176.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           B7210]
 gi|167900651|ref|ZP_02487856.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
           13177]
 gi|167908871|ref|ZP_02495962.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 112]
 gi|167916910|ref|ZP_02504001.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           BCC215]
 gi|226193338|ref|ZP_03788948.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pakistan 9]
 gi|121227877|gb|ABM50395.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
 gi|124292369|gb|ABN01638.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10229]
 gi|126242013|gb|ABO05106.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
           10247]
 gi|225934938|gb|EEH30915.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522916|gb|EEP86358.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
           4]
 gi|243063643|gb|EES45829.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
          Length = 162

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           +  + D   +    N + +        +  P+S  + +    + ++ DLI++IPVKM + 
Sbjct: 36  EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 92

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 93  LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 149

Query: 143 ILNA 146
           I+  
Sbjct: 150 IITP 153


>gi|329929333|ref|ZP_08283086.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
 gi|328936702|gb|EGG33145.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
          Length = 420

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%)

Query: 15  LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           +  +SM    P Q    + P     M  +  +V  + +  +  S    +   +N +L+M+
Sbjct: 286 IPQQSMPYGQP-QTPYQAQPQQYGGMPNRNVNVQPV-QFANLQSAPYTQVDENNLNLLMD 343

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+K+ + LG    QI +++ +S+G +I LDK  GE VDI +N++ IAKGE+ +++E   
Sbjct: 344 IPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVIDE--- 400

Query: 135 HFGVRVIEILN 145
           +FGVRV +I++
Sbjct: 401 NFGVRVTDIVS 411


>gi|115350087|ref|YP_771926.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
 gi|115280075|gb|ABI85592.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
          Length = 161

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D  L D   +    N + +        + +P+S  + +    + ++ ++I++IPVKM + 
Sbjct: 35  DQGLDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 91

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 92  LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 148

Query: 143 ILNA 146
           I+  
Sbjct: 149 IITP 152


>gi|297538202|ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
 gi|297257549|gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
          Length = 157

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 18  RSMHIDNPLQDTNVSSPTNNSE--MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
                     D   +     +     +Q  + +         + N L+ + ++ D I++I
Sbjct: 21  AEQSTAEATDDWGAAMAEQEATDTSALQSKNAEQTQVFTEFTAKNKLQDTQNDIDFILDI 80

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           PV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    
Sbjct: 81  PVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---K 137

Query: 136 FGVRVIEILNA 146
           FG+R+ +I+  
Sbjct: 138 FGIRLTDIITP 148


>gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 375

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                K T N  LIM++P+++ + LG     I ++++L  G VI LDK  GE VDI +N 
Sbjct: 283 PQRSGKDTTNLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNG 342

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + IAKGE+ +++E   +FGVR+ +I++ 
Sbjct: 343 KLIAKGEVVVIDE---NFGVRITDIVSP 367


>gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
           DSM 12885]
 gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
           DSM 12885]
          Length = 287

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
           G++     P        P   +    +       +        +    S    DL++++P
Sbjct: 154 GQAATAGEPALRWE-PGPGFTAGAAFRPFPGAEGTAAAGPAGGDGAGPSRGTLDLVLDVP 212

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           +++ + LG     +  ++ ++ G V+ LD+  GE VD+ +N + IA+GE+ +++E   +F
Sbjct: 213 LQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVIDE---NF 269

Query: 137 GVRVIEILNA 146
           G+R+ +I++ 
Sbjct: 270 GIRITDIVSP 279


>gi|53717667|ref|YP_106653.1| flagellar motor switch protein [Burkholderia pseudomallei K96243]
 gi|126440526|ref|YP_001057085.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
 gi|126454703|ref|YP_001064315.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106a]
 gi|134281531|ref|ZP_01768239.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
 gi|167892139|ref|ZP_02479541.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           7894]
 gi|217423854|ref|ZP_03455354.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
 gi|237814423|ref|YP_002898874.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           MSHR346]
 gi|242314847|ref|ZP_04813863.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106b]
 gi|254174650|ref|ZP_04881311.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           10399]
 gi|254184093|ref|ZP_04890684.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1655]
 gi|254186559|ref|ZP_04893076.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254201358|ref|ZP_04907722.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
 gi|254206700|ref|ZP_04913051.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
 gi|254260996|ref|ZP_04952050.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710a]
 gi|254298639|ref|ZP_04966090.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           406e]
 gi|254357363|ref|ZP_04973637.1| flagellar motor switch protein FliN [Burkholderia mallei
           2002721280]
 gi|52208081|emb|CAH34011.1| probable flagellar motor switch protein [Burkholderia pseudomallei
           K96243]
 gi|126220019|gb|ABN83525.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
 gi|126228345|gb|ABN91885.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106a]
 gi|134247198|gb|EBA47284.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
 gi|147747252|gb|EDK54328.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
 gi|147752242|gb|EDK59308.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
 gi|148026427|gb|EDK84512.1| flagellar motor switch protein FliN [Burkholderia mallei
           2002721280]
 gi|157808697|gb|EDO85867.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           406e]
 gi|157934244|gb|EDO89914.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160695695|gb|EDP85665.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
           10399]
 gi|184214625|gb|EDU11668.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1655]
 gi|217392917|gb|EEC32939.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
 gi|237504588|gb|ACQ96906.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           MSHR346]
 gi|242138086|gb|EES24488.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1106b]
 gi|254219685|gb|EET09069.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           1710a]
          Length = 165

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           +  + D   +    N + +        +  P+S  + +    + ++ DLI++IPVKM + 
Sbjct: 39  EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 95

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 96  LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 152

Query: 143 ILNA 146
           I+  
Sbjct: 153 IITP 156


>gi|254251032|ref|ZP_04944350.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
 gi|124893641|gb|EAY67521.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
          Length = 166

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           L D   +    N + +        + +P+S  + +    + ++ ++I++IPVKM + LG 
Sbjct: 43  LDDWAAALAEQNQQPVPAGATGAGVFQPLSKAAPS---STHNDIEMILDIPVKMTVELGR 99

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 100 TKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 156

Query: 146 A 146
            
Sbjct: 157 P 157


>gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC
           35469]
 gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia
           fergusonii ATCC 35469]
 gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253]
 gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227]
          Length = 137

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  + N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADENNGALDDLWAEALSEQQTTSSKSATDAVFQQLGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. G11MC16]
 gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. G11MC16]
          Length = 394

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
              + +E  IQ  D     +P       +      N +L+ ++P+++ + LG     +  
Sbjct: 282 EEESVAERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQE 335

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           ++ LS G +I LDK  GE VDI +NN+ IAKGE+ +++E   +FGVR+ +I++
Sbjct: 336 ILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDE---NFGVRITDIVS 385


>gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
          Length = 138

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 15  LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           +    M   N   D ++S+    ++ + ++    +      S           + D+IM+
Sbjct: 1   MRNSPMSDSNNPSDGDISADDMWADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMIMD 60

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +   
Sbjct: 61  IPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD--- 117

Query: 135 HFGVRVIEILNA 146
            +GVR+ +I+  
Sbjct: 118 KYGVRITDIITP 129


>gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 393

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
              + +E  IQ  D     +P       +      N +L+ ++P+++ + LG     +  
Sbjct: 281 EEESVAERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQE 334

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           ++ LS G +I LDK  GE VDI +NN+ IAKGE+ +++E   +FGVR+ +I++
Sbjct: 335 ILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDE---NFGVRITDIVS 384


>gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein
           [Paenibacillus polymyxa SC2]
 gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus polymyxa SC2]
          Length = 437

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
            S    +   +N +L+M+IP+++ + LG    QI +++ LS+G +I LDK  GE VDI +
Sbjct: 343 QSGGFPQVDENNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMV 402

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           NN+ IAKGE+ +++E   +FGVRV +I++
Sbjct: 403 NNKLIAKGEVVVIDE---NFGVRVTDIVS 428


>gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
 gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
          Length = 436

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
            S    +   +N +L+M+IP+++ + LG    QI +++ LS+G +I LDK  GE VDI +
Sbjct: 342 QSGAFAQVDENNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILV 401

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           NN+ IAKGE+ +++E   +FGVRV +I++
Sbjct: 402 NNKLIAKGEVVVIDE---NFGVRVTDIVS 427


>gi|171316889|ref|ZP_02906098.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
 gi|171097970|gb|EDT42788.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
          Length = 172

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           L D   +    N + +        + +P+S  + +    + ++ ++I++IPVKM + LG 
Sbjct: 49  LDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 105

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 106 TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 162

Query: 146 A 146
            
Sbjct: 163 P 163


>gi|78064700|ref|YP_367469.1| Type III secretion system outer membrane O protein [Burkholderia
           sp. 383]
 gi|77965445|gb|ABB06825.1| Type III secretion system outer membrane O protein [Burkholderia
           sp. 383]
          Length = 163

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D  + D   +    N + +        + +P+S  + +    + ++ ++I++IPVKM + 
Sbjct: 37  DPGMDDWAAALAEQNQQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 93

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 94  LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 150

Query: 143 ILNA 146
           I+  
Sbjct: 151 IITP 154


>gi|261407971|ref|YP_003244212.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. Y412MC10]
 gi|261284434|gb|ACX66405.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. Y412MC10]
          Length = 420

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%)

Query: 15  LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           +  +SM    P Q    + P     M  +  +V  + +  +  S    +   +N +L+M+
Sbjct: 286 IPQQSMPYGQP-QMPYQTQPQQYGGMPNRNVNVQPV-QFANLQSAPYTQVDENNLNLLMD 343

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+K+ + LG    QI +++ +S+G +I LDK  GE VDI +N++ IAKGE+ +++E   
Sbjct: 344 IPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVIDE--- 400

Query: 135 HFGVRVIEILN 145
           +FGVRV +I++
Sbjct: 401 NFGVRVTDIVS 411


>gi|253996307|ref|YP_003048371.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
 gi|253982986|gb|ACT47844.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
          Length = 157

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 18  RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
                +    D   +   N     +Q +  +         + N L ++ ++ D I++IPV
Sbjct: 25  EQASSETAADDWGAAM--NEQAAALQDDKAEKAQVFTEFTAKNKLHETQNDIDFILDIPV 82

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           ++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG
Sbjct: 83  QLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFG 139

Query: 138 VRVIEILNA 146
           +R+ +I+  
Sbjct: 140 IRLTDIITP 148


>gi|254194758|ref|ZP_04901189.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
 gi|169651508|gb|EDS84201.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
          Length = 165

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           +  + D   +    N + +        +  P+S  + +    + ++ DLI++IPVKM + 
Sbjct: 39  EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 95

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ IN   IA+GE+ ++ +    FG+R+ +
Sbjct: 96  LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLINGCLIAQGEVVVVND---KFGIRLTD 152

Query: 143 ILNA 146
           I+  
Sbjct: 153 IITP 156


>gi|107021593|ref|YP_619920.1| flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
 gi|116688063|ref|YP_833686.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           HI2424]
 gi|170731413|ref|YP_001763360.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
 gi|105891782|gb|ABF74947.1| Flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
 gi|116646152|gb|ABK06793.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           HI2424]
 gi|169814655|gb|ACA89238.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
          Length = 162

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D  + D   +    N + +        + +P+S  + +    + ++ ++I++IPVKM + 
Sbjct: 36  DPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 92

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 93  LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 149

Query: 143 ILNA 146
           I+  
Sbjct: 150 IITP 153


>gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2]
 gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580]
 gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2]
          Length = 377

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 28/169 (16%)

Query: 2   IKKVSKISYIKDNLEG-----------RSMHIDNPLQDTNVSSP------TNNSEMLIQK 44
           I ++  +++ KD ++            ++  +  P+Q+    +P      T   E   ++
Sbjct: 203 IMQLYPLTFAKDLIDELTNQDGGEEPVKTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKR 262

Query: 45  NDVDNISEPI--------SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
                +SEP+        S       +    N D++M+IP+ + + LG     +  ++ L
Sbjct: 263 QGTAKVSEPVQVAPAEFQSFAPQTEAQPHLQNLDMLMDIPLSVTVELGRTNRSVKEVLEL 322

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           S G +I LDK  GE VDI +N + +AKGE+ +++E   +FGVRV +IL+
Sbjct: 323 STGSIIELDKLAGEPVDILVNQRVVAKGEVVVIDE---NFGVRVTDILS 368


>gi|167579275|ref|ZP_02372149.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           TXDOH]
 gi|167617381|ref|ZP_02386012.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           Bt4]
          Length = 165

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           +  + D   +    N + +        +  P+S  + +    + ++ D+I++IPVKM + 
Sbjct: 39  EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAAS---STHNDIDMILDIPVKMTVE 95

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 96  LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 152

Query: 143 ILNA 146
           I+  
Sbjct: 153 IITP 156


>gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905]
 gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905]
          Length = 407

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDL 71
              +      +  +Q      P   ++       V+   ++  S DSN I +    N ++
Sbjct: 268 PPAQPVYQQPEATMQQPVYQEPQQFAQPARPAQPVNVQQAQFASFDSNVISQSEARNLNM 327

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +++IP+++ + LG     +  ++ LS G +I LDK  GE VDI +N++ IAKGE+ +++E
Sbjct: 328 LLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDE 387

Query: 132 DDTHFGVRVIEILN 145
              +FGVR+ ++L+
Sbjct: 388 ---NFGVRITDVLS 398


>gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804]
 gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii]
          Length = 181

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 60/98 (61%), Gaps = 7/98 (7%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++ +P++  +      + ++ DLIM++PV++ + LG   + I NL+ L +G V+ LD   
Sbjct: 80  SVFKPLADAAGG----NGNDIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLA 135

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           GE +DI +N   IA+GE+ ++EE    +G+R+ +I+  
Sbjct: 136 GEPMDIFVNGYLIAQGEVVVVEE---KYGIRLTDIITP 170


>gi|332702323|ref|ZP_08422411.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552472|gb|EGJ49516.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 181

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           ++          E L  K+ V    +      +   E++  + D I++IP+++   LG  
Sbjct: 57  EEEKNIKAEKRQEFLSSKSQVAEFKDLTHEAKSPRPEQTKRDLDFILDIPLEVSAELGRT 116

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + I+ L+ L +G V+ L+K  GE ++I +N + +A+GE  ++ E    FG+R+ +I++ 
Sbjct: 117 KLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 173


>gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetivibrio cellulolyticus CD2]
 gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetivibrio cellulolyticus CD2]
          Length = 410

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           +  ++       +  + ++     N  LIM++P+++ + LG     I +++    G +I 
Sbjct: 307 REPINVQPAQFQAFDDGMISFERKNIGLIMDVPLQVTVELGRTNRLIKDILEFGPGSIIE 366

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           LDK  GE VDI +N + IAKGE+ +++E    FGVR+ +I++ 
Sbjct: 367 LDKLAGEPVDILVNGKVIAKGEVVVIDES---FGVRITDIIHP 406


>gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
 gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
          Length = 137

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++N   D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNLADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 134

 Score =  126 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L +K    N S             +  +  + DLIM+IPVK
Sbjct: 1   MNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 60

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 61  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 118 RITDIITP 125


>gi|254246640|ref|ZP_04939961.1| Surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia PC184]
 gi|124871416|gb|EAY63132.1| Surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia PC184]
          Length = 164

 Score =  126 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D  + D   +    N + +        + +P+S  + +    + ++ ++I++IPVKM + 
Sbjct: 38  DPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 94

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 95  LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 151

Query: 143 ILNA 146
           I+  
Sbjct: 152 IITP 155


>gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13]
          Length = 410

 Score =  126 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNILEKSTDNFDLI 72
           E      + P+++   +           +       +P    S ++  + E   +N +++
Sbjct: 272 EEERSVTEAPIREHAYAGGHERPSNPAPRTQQAVNVQPAVFSSFETTTVEESEPNNLNML 331

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++IP+++ + LG     + +++ LS G +I LDK  GE VDI +NN+ IA+GE+ +++E 
Sbjct: 332 LDIPLQVTVELGRTKRSVKDILELSTGSIIELDKLAGEPVDILVNNKLIAQGEVVVIDES 391

Query: 133 DTHFGVRVIEILN 145
              FGVRV +I++
Sbjct: 392 ---FGVRVTDIVS 401


>gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
 gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus
           C3-41]
          Length = 407

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDL 71
              +      +  +Q      P   ++       V+   ++  S DSN I +    N ++
Sbjct: 268 PPAQPVYQQPEATMQQPVYQEPQQFAQPARAAQPVNVQQAQFASFDSNVISQSEARNLNM 327

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +++IP+++ + LG     +  ++ LS G +I LDK  GE VDI +N++ IAKGE+ +++E
Sbjct: 328 LLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDE 387

Query: 132 DDTHFGVRVIEILN 145
              +FGVR+ ++L+
Sbjct: 388 ---NFGVRITDVLS 398


>gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. JDR-2]
 gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. JDR-2]
          Length = 421

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
            +S   D  +Q     +  + +   +    V    +  + +    ++    N +L+++IP
Sbjct: 291 QQSAAFDIQMQPQGPQTYGHAANRNVNVQPV----QFANFNQAPYVQTDETNLNLLLDIP 346

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           +K+ + LG    QI +++ LS+G +I LDK  GE VDI +NN+ IAKGE+ +++E   +F
Sbjct: 347 LKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NF 403

Query: 137 GVRVIEILN 145
           GVRV +I++
Sbjct: 404 GVRVTDIVS 412


>gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 137

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L +K    N S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|315121855|ref|YP_004062344.1| putative flagellar motor switch protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495257|gb|ADR51856.1| putative flagellar motor switch protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 136

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 8/136 (5%)

Query: 20  MHIDNPLQDTNVSSPT--------NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
           MHID+PLQD + S             +     +ND+D+ SE ISS+SNNI EKS+DN DL
Sbjct: 1   MHIDSPLQDHDQSEECTLKNNSHIFQNTTENPQNDLDDSSEKISSNSNNIFEKSSDNIDL 60

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           IMNIPV +QIILGSCCMQISNLVNLSKGDVITLDKRVGE+VDITINNQKIAKGEITIME+
Sbjct: 61  IMNIPVNIQIILGSCCMQISNLVNLSKGDVITLDKRVGEAVDITINNQKIAKGEITIMED 120

Query: 132 DDTHFGVRVIEILNAQ 147
           DDTHFGVRVIE+LN++
Sbjct: 121 DDTHFGVRVIELLNSK 136


>gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 134

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L ++    N S             +  +  + DLIM+IPVK
Sbjct: 1   MNNPSDENTGALDDLWADALNEQKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 60

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 61  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 118 RITDIITP 125


>gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 137

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L ++    N S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENTGALDDLWADALNEQKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|91776322|ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT]
 gi|91710309|gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT]
          Length = 142

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 31  VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
            S         +Q N  +         S N L ++ ++ D I++IPV++ + LG   + I
Sbjct: 21  QSQAEQAEASALQDNKAEQAPVFTEFSSKNKLHETQNDIDFILDIPVQLTVELGRTKIAI 80

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 81  KNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 133


>gi|134294172|ref|YP_001117907.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
 gi|134137329|gb|ABO53072.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
          Length = 169

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 6/121 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           L D   +    N + ++       + +P+S  + +    + ++ ++I++IPVKM + LG 
Sbjct: 46  LDDWAAALAEQNEQPVVAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 102

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD   GE +D+ +N   +A+GE+ ++ +    FG+R+ +I+ 
Sbjct: 103 TKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLLAQGEVVVVND---KFGIRLTDIIT 159

Query: 146 A 146
            
Sbjct: 160 P 160


>gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont]
          Length = 136

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 7/128 (5%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEP----ISSDSNNILEKSTDNFDLIMNIPVK 78
           D+     ++S+    +E + ++    + ++P      S   +    S  + DLIM+IPVK
Sbjct: 3   DSKKPSDDISADDLWAEAMDEQAATSSAAKPGDNVFKSLEASAASGSLQDIDLIMDIPVK 62

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 63  LTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQGEVVVVND---KYGV 119

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 120 RITDIITP 127


>gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 137

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L ++    N S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENTGALDDLWADALNEQKATTNKSTADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|315648126|ref|ZP_07901227.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus vortex V453]
 gi|315276772|gb|EFU40115.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus vortex V453]
          Length = 419

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
            +SM    P        P     M  +  +V  + +  +  S    +   +N +L+M+IP
Sbjct: 287 PQSMPYGQPQMPYQG-HPQQYGGMPNRNVNVQPV-QFANLQSAPYTQVDENNLNLLMDIP 344

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           +K+ + LG    QI +++ +S+G +I LDK  GE VDI +N++ IAKGE+ +++E   +F
Sbjct: 345 LKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVIDE---NF 401

Query: 137 GVRVIEILN 145
           GVRV +I++
Sbjct: 402 GVRVTDIVS 410


>gi|329901243|ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549175|gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 137

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
            D   +            N            + +    + ++ D I++IPV++ + LG  
Sbjct: 12  DDWGAAIAEQEQAEKAALNAQQAAPTVFQEFAGSSKLATHNDIDFILDIPVQLTVELGRT 71

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I++ 
Sbjct: 72  KIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIISP 128


>gi|167560938|ref|ZP_02353854.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
           EO147]
 gi|167568198|ref|ZP_02361072.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
           C6786]
          Length = 162

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D  + D   +    N   +        +  P+S  +      + ++ DLI++IPVKM + 
Sbjct: 36  DAGMDDWAAALAEQNQLPIEPGATGAGVFRPLSKAAAA---STHNDIDLILDIPVKMTVE 92

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 93  LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 149

Query: 143 ILNA 146
           I+  
Sbjct: 150 IITP 153


>gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Bacillus pumilus
           ATCC 7061]
 gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Bacillus pumilus
           ATCC 7061]
          Length = 374

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 25/166 (15%)

Query: 2   IKKVSKISYIKDNLEG--RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSN 59
           I ++  I++ KD +         + P+QDT VS+P         ++     + P    + 
Sbjct: 203 IMQLYPITFAKDLIAELTDPAQEEEPVQDTQVSTPEPQQAAPQTQSAPAQQAAPPKRQAK 262

Query: 60  NILEKSTD--------------------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
                  +                    N D++M+IP+ + + LG     +  ++ LS G
Sbjct: 263 PKPAAPVNVAPVEFEAFSEPQHTTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAG 322

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +I LDK  GE VDI +N + +AKGE+ +++E   +FGVRV +IL+
Sbjct: 323 SIIELDKLAGEPVDILVNKRIVAKGEVVVIDE---NFGVRVTDILS 365


>gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
 gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
          Length = 153

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 62/109 (56%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +E+L   +     +    + S   + +  ++ +LI++IPV++ + LG   + I N++ L+
Sbjct: 37  AEVLPSPDHGAPAAFANFTSSAGSVNQPGNDINLILDIPVQLTVELGRTRIPIKNILQLA 96

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 97  QGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIVTP 142


>gi|33592494|ref|NP_880138.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
 gi|33572140|emb|CAE41683.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
 gi|332381912|gb|AEE66759.1| flagellar motor switch protein FliN [Bordetella pertussis CS]
          Length = 166

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQII 82
            P Q   +    + ++ L ++N     +           E     + DLIM++PV+M + 
Sbjct: 35  APTQADGLKPQDDWADALAEQNAAPAAAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVE 94

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ ++++    +G+R+ +
Sbjct: 95  LGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDD---KYGIRLTD 151

Query: 143 ILNA 146
           I+  
Sbjct: 152 IITP 155


>gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp.
           MED105]
 gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp.
           MED105]
          Length = 149

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           +  Q +D    S      + ++   + ++ D+I++IPV++ + LG   + I +++ L++G
Sbjct: 37  LFAQASDAKPASGLFQPFAGSVASGTQNDIDMILDIPVQLTVELGRTKIPIKHILQLAQG 96

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            VI LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 97  SVIELDGLAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 140


>gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
           6192]
 gi|306532337|gb|ADN01871.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
           6192]
 gi|315186375|gb|EFU20135.1| flagellar motor switch protein FliN [Spirochaeta thermophila DSM
           6578]
          Length = 350

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 10/152 (6%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI------- 54
           + +   + +++  +         P    + S+          +  V     P        
Sbjct: 194 VIEFFDVPFVRSLVNPSRPSPSQPANQASTSAQGATMAQSQGQPTVWGPGAPQVQQVQFP 253

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S     +  +   N  L+M++ +++ + LG     +  ++ + +G +I LDK  GE VDI
Sbjct: 254 SFPEGALGPEQQANISLLMDVYMELTVELGRTKKMVKEILAMGEGTIIELDKLAGEPVDI 313

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N++ IA+GE+ +++E   +FGVRV EI++ 
Sbjct: 314 LVNHKLIARGEVVVIDE---NFGVRVTEIISP 342


>gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
 gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
          Length = 133

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           M   N   D ++S+    ++ + ++    +     ++        S  + D+IM+IPVK+
Sbjct: 1   MSDTNKPSDDDISADDMWADAMNEQTKSPSTDGVFNTFEGGENNASLQDIDMIMDIPVKL 60

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR
Sbjct: 61  TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117

Query: 140 VIEILNA 146
           + +I+  
Sbjct: 118 ITDIITP 124


>gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
           35316]
 gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
           35316]
          Length = 137

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  + + +     ++ L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENSGALDDLWADALNEQKTTPGKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 137

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  + + +     ++ L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENSGALDDLWADALNEQKATPAKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 137

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  + + +     ++ L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENSGALDDLWADALNEQKTTPTKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium papyrosolvens DSM 2782]
 gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium papyrosolvens DSM 2782]
          Length = 400

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
            E   Q++ V        +  + +      N  LIM++P+++ + LG     I +++   
Sbjct: 291 QEPQRQRSPVSVQPVQFQAFDDGLSATEKKNISLIMDLPLQVTVELGRTQKLIKDILEFG 350

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            G VI LDK  GE VDI +N + IAKGE+ +++E    FGVR+ +I++ 
Sbjct: 351 SGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDES---FGVRITDIIHP 396


>gi|146282918|ref|YP_001173071.1| flagellar motor switch protein [Pseudomonas stutzeri A1501]
 gi|145571123|gb|ABP80229.1| flagellar motor switch protein FliN [Pseudomonas stutzeri A1501]
          Length = 193

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D+I++IPV + + +GS  + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+
Sbjct: 109 PNLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEV 168

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ E    FG+R+ ++++ 
Sbjct: 169 VVVNE---KFGIRLTDVISP 185


>gi|325981183|ref|YP_004293585.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
 gi|325530702|gb|ADZ25423.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
          Length = 180

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 18  RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
                       +++S    S   +  +   N S       +     +  + DLI++IPV
Sbjct: 46  AEQSTAEQSSTNSLASSGKESNTSVFGSQNANPSVFQEFSKDGESHGTRHDIDLILDIPV 105

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           +M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG
Sbjct: 106 QMTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFG 162

Query: 138 VRVIEILNA 146
           +R+ +I+  
Sbjct: 163 IRLTDIITP 171


>gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617]
          Length = 133

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           M   N   D ++S+    ++ + ++    +      S +         + D+IM+IPVK+
Sbjct: 1   MSDSNNPSDDDISADDMWADAMSEQTQSPSGDGVFKSLNGGEHSAGLQDIDMIMDIPVKL 60

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR
Sbjct: 61  TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117

Query: 140 VIEILNA 146
           + +I+  
Sbjct: 118 ITDIITP 124


>gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN
 gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 137

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica]
          Length = 144

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 11/137 (8%)

Query: 18  RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--------NF 69
           R+  + +  Q T+ ++  +  +M  +  +     +P S  S  I E            + 
Sbjct: 2   RNSPMSDAKQPTDTAATGSAEDMWAEALEQQAAQQPTSDSSAAIFESLEPQDALAHLSDI 61

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ ++
Sbjct: 62  DLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 121

Query: 130 EEDDTHFGVRVIEILNA 146
            +    +G+R+ +I+  
Sbjct: 122 SD---KYGIRITDIITP 135


>gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
 gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ]
          Length = 155

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-SNNILEKSTDNFDLIMNIPV 77
           +     P +D   ++        + +    N  + +      +   +   + D+IM+IPV
Sbjct: 21  AEQAATPAEDDPWAAALAEQAATLPEPATQNAGQNVFKPLGKSATAEGMRDLDMIMDIPV 80

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           K+ + LG   + I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++++    +G
Sbjct: 81  KLSVELGRTRITIKQLLELAQGSVVELDGLAGEPMDILINGYLIAQGEVVVVDD---KYG 137

Query: 138 VRVIEILNA 146
           +R+ EI+  
Sbjct: 138 IRITEIITP 146


>gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
 gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
          Length = 137

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP    + +     ++ L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDANSGALDDLWADALNEQQAPASKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|167464155|ref|ZP_02329244.1| flagellar motor switch protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382381|ref|ZP_08056288.1| flagellar motor switching and energizing phosphatase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153734|gb|EFX46109.1| flagellar motor switching and energizing phosphatase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 415

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 75/130 (57%), Gaps = 7/130 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG S ++ +P        P  +S M+ +  +V  + +  +  +    +    N +L+++I
Sbjct: 284 EGGSAYLASPAYKE---EPAASSGMMQRNVNVQPV-QFSNLQAGGYAQADETNLNLLLDI 339

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+K+ + LG     I +++ L +G ++ LDK  GE VDI +NN+ IAKGE+ +++E   +
Sbjct: 340 PLKVTVELGRTNKMIKDILELQQGSIVELDKLAGEPVDILVNNKLIAKGEVVVIDE---N 396

Query: 136 FGVRVIEILN 145
           FGVRV +I++
Sbjct: 397 FGVRVTDIVS 406


>gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
 gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
          Length = 137

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENTGALDDLWADALNEQKTTPAKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
 gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
          Length = 137

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENTGALDDLWADALNEQKTTPTKSAADAVFQQLGGGDVSGALQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1]
 gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1]
          Length = 401

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 83/148 (56%), Gaps = 8/148 (5%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQ----DTNVSSPTNNSEMLIQKNDVDNISEPISSD 57
           ++ V ++S ++ +   +  + DN  Q    +   S    N++ + Q   V   S   + +
Sbjct: 249 LEPVQRVSPVQPSYSQQDTYRDNTAQHVPQEKTQSQHFGNNKNVEQPVQVQPASF-TNFE 307

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
             ++ +  + N D++++IP+ + + LG     + +++ LS G +I LDK  GE VD+ +N
Sbjct: 308 QPSMSKPESKNLDMLLDIPLNVTVELGRTNRSVKDILELSSGSIIELDKLAGEPVDVLVN 367

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
           ++ IAKGE+ +++E   +FGVR+ +I++
Sbjct: 368 SRLIAKGEVVVIDE---NFGVRITDIVS 392


>gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
 gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
          Length = 137

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENTGALDDLWADALNEQKTTTTKSAADAVFQQLGGGDVSGALQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|167585019|ref|ZP_02377407.1| flagellar motor switch protein FliN [Burkholderia ubonensis Bu]
          Length = 163

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 7/122 (5%)

Query: 26  LQDTNVSSPTNNSEMLIQ-KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           L D   +    N +  ++       + +P+S  ++     + ++ D+I++IPVKM + LG
Sbjct: 39  LDDWAAALAEQNQQPAVEPGATGAGVFQPLSKAAST---STHNDIDMILDIPVKMTVELG 95

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 96  RTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 152

Query: 145 NA 146
             
Sbjct: 153 TP 154


>gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
 gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
          Length = 133

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           M   N   D ++S+    ++ + ++    +      S           + D+IM+IPVK+
Sbjct: 1   MSDSNNPSDGDISADDMWADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMIMDIPVKL 60

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR
Sbjct: 61  TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117

Query: 140 VIEILNA 146
           + +I+  
Sbjct: 118 ITDIITP 124


>gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
           BAA-2158]
          Length = 133

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           M   N   D ++S+    ++ + ++    +      S           + D+IM+IPVK+
Sbjct: 1   MSESNNPSDDDISADDMWADAMNEQAKSPSGDGVFKSLDGGEHAAGLQDIDMIMDIPVKL 60

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR
Sbjct: 61  TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117

Query: 140 VIEILNA 146
           + +I+  
Sbjct: 118 ITDIITP 124


>gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda]
          Length = 134

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 18  RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
           R   + +   D          E      +  +I + +  ++  +   S  + DLI++IPV
Sbjct: 1   RQQAVSDAQDDAADLWAEAMGEQQTAGQNNGDIFQNLD-ETPTLGAGSGQDIDLILDIPV 59

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           K+ + LG   M I  L+ LS+G V+ LD   GE +D+ IN   IA+GE+ ++ +    FG
Sbjct: 60  KLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVND---KFG 116

Query: 138 VRVIEILNA 146
           VR+ +I+  
Sbjct: 117 VRITDIITP 125


>gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC
           BAA-895]
 gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895]
          Length = 137

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  +   +     ++ L ++    + S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPSDENTGALDDLWADALNEQKTTTSKSAADAVFQQLGGGDVSGNLQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 121 RITDIITP 128


>gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 354

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N +L+M++ + + + LG   M I +++ L +G +I LDK  GE VD+ +N + IAKGE
Sbjct: 268 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 327

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           + +++E   +FGVRV +I++ 
Sbjct: 328 VVVIDE---NFGVRVTDIVSP 345


>gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein
           [Edwardsiella tarda EIB202]
 gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein
           [Edwardsiella tarda EIB202]
 gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60]
          Length = 137

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           ++  +   S  + DLI++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +D+ I
Sbjct: 42  ETPTLGAGSGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLI 101

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   IA+GE+ ++ +    FGVR+ +I+  
Sbjct: 102 NGYLIAQGEVVVVND---KFGVRITDIITP 128


>gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum
           GMI1000]
 gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia
           solanacearum GMI1000]
          Length = 156

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           N + ++ +P+            ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 49  NPLSSVFKPLMPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 108

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+  
Sbjct: 109 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 147


>gi|186477686|ref|YP_001859156.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
 gi|184194145|gb|ACC72110.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
          Length = 154

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 73/135 (54%), Gaps = 7/135 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE----KSTDNFDL 71
           E   ++   P   ++ +S  + +  L ++ND   +S   +     + +     + ++ D+
Sbjct: 14  EESKVNDSMPGSGSDEASLDDWASALAEQNDNTAVSASTAGVFQPLSKVEPTTTRNDIDM 73

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +
Sbjct: 74  ILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 133

Query: 132 DDTHFGVRVIEILNA 146
               FG+R+ +I+  
Sbjct: 134 ---KFGIRLTDIITP 145


>gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
 gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
          Length = 175

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 7/136 (5%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFD 70
           +++L   +M      +D   +  ++ +    Q  + D  + +P+   +++    +  + D
Sbjct: 37  EEDLWAAAMAEQQATEDEANAEASDPAPDKSQAQNADHEVFKPLDEGASST---TPRDLD 93

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LIM+IPVK+ + LG   + I  L+ L++G VI LD   GE +DI IN   IA+GE+ +++
Sbjct: 94  LIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVVD 153

Query: 131 EDDTHFGVRVIEILNA 146
           +    +G+R+ EI+  
Sbjct: 154 D---KYGIRITEIITP 166


>gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
 gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
          Length = 136

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 12/126 (9%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDS------NNILEKSTDNFDLIMNIPVKMQ 80
            D ++S+    +  +   N+    S P  S++       +    S  + DLIM+IPVK+ 
Sbjct: 8   SDDDISADDLWAAAM---NEQAATSAPEQSEAVFKSLDGSGASGSLQDIDLIMDIPVKLT 64

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR+
Sbjct: 65  VELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND---KYGVRI 121

Query: 141 IEILNA 146
            +I+  
Sbjct: 122 TDIITP 127


>gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 353

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N +L+M++ + + + LG   M I +++ L +G +I LDK  GE VD+ +N + IAKGE
Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           + +++E   +FGVRV +I++ 
Sbjct: 327 VVVIDE---NFGVRVTDIVSP 344


>gi|302878291|ref|YP_003846855.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
           ES-2]
 gi|302581080|gb|ADL55091.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
           ES-2]
          Length = 148

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 9/131 (6%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           E  +        D   +     +     K  V                 + ++ D+I++I
Sbjct: 18  EQATAEASTGTDDWAAAMAEQEAPPAAGKAHV------FEKFGAAGSAATPNDLDMILDI 71

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           PV++ + LG   M I NL+ L++G V+ L    GE +D+ IN   IA+GE+ ++ +    
Sbjct: 72  PVQLTVELGRTKMPIKNLLQLAQGSVVELSGMAGEPLDVMINGFLIAQGEVVVVND---K 128

Query: 136 FGVRVIEILNA 146
            G+R+ +I   
Sbjct: 129 LGIRLTDITTP 139


>gi|300696947|ref|YP_003747608.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum CFBP2957]
 gi|299073671|emb|CBJ53191.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum CFBP2957]
          Length = 163

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +D+ ++ +P+  D         ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 56  DDIHSVFKPLVIDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 115

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+  
Sbjct: 116 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 154


>gi|297584048|ref|YP_003699828.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           selenitireducens MLS10]
 gi|297142505|gb|ADH99262.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           selenitireducens MLS10]
          Length = 412

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 59/91 (64%), Gaps = 3/91 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S ++ ++ E    N DL+M+IP+++ + LG     I  ++ L +G ++ LDK  GE VDI
Sbjct: 316 SFETPSLNENEQRNLDLLMDIPLEVTVELGRTKRSIKEILELGQGSIVELDKLAGEPVDI 375

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +N + IAKGE+ +++E   +FGVRV +I++
Sbjct: 376 LVNQRLIAKGEVVVIDE---NFGVRVTDIVS 403


>gi|295696125|ref|YP_003589363.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           tusciae DSM 2912]
 gi|295411727|gb|ADG06219.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           tusciae DSM 2912]
          Length = 395

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 9/119 (7%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           T+ +     ++ +++  +   +  P +          TDN DL++++ + + + LG    
Sbjct: 276 TSQTEAAAGAQTVVKPVEFGPLHSPAAEAPR------TDNLDLLLDVSLTVSVELGRTHQ 329

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +  +++ S G V+ LD+  GE VDI +N + IAKGE+ +++E   +FGVRV +I++ +
Sbjct: 330 SVREVLSWSLGSVVELDRLAGEPVDIYVNQKLIAKGEVVVIDE---NFGVRVTDIVHPR 385


>gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
           27750]
 gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
           27750]
          Length = 437

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 15  LEGRSMHIDNPLQDT-NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
           ++G       P+Q       P          N      +P ++D N I +K  +N +LI 
Sbjct: 311 MQGMPYGYGMPMQGMMGQPMPMQGYAQPQDVNVAPAAFQPFATDVNPISQK--ENIELIK 368

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P+++ + LG     I +++  + G ++ L+K  GESVD+ +N + +AKGE+ ++EE  
Sbjct: 369 DVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEES- 427

Query: 134 THFGVRVIEILN 145
             FGVR+ EI+ 
Sbjct: 428 --FGVRITEIIK 437


>gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
 gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
          Length = 137

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS---SDSNNILEKSTDNFDLIMNIPVKM 79
           + P  D    +    +E + ++      S  I     +   +   +  + DLI++IPVK+
Sbjct: 5   NKPSADAQDDAADLWAEAMGEQQAASQHSGDIFQNLEEGATLGSSAGQDIDLILDIPVKL 64

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + LG   M I  L+ LS+G V++LD   GE +D+ IN   IA+GE+ ++ +    FGVR
Sbjct: 65  TVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDVLINGYLIAQGEVVVVND---KFGVR 121

Query: 140 VIEILNA 146
           + +I+  
Sbjct: 122 ITDIITP 128


>gi|226941270|ref|YP_002796344.1| FliN [Laribacter hongkongensis HLHK9]
 gi|226716197|gb|ACO75335.1| FliN [Laribacter hongkongensis HLHK9]
          Length = 141

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
             S      +  N D+I++IPV M + LG   + I NL+ L++G V+ LD   GE +D+ 
Sbjct: 45  GASAPASTGAPQNLDMILDIPVNMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVL 104

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 105 VNGCLIAQGEVVVVND---KFGIRLTDIITP 132


>gi|224826625|ref|ZP_03699726.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
 gi|224601226|gb|EEG07408.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
          Length = 143

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS-TDNFDLIMNIPVKMQIILG 84
           + D   +     S     +  V                 S   N D+I++IPV++ + LG
Sbjct: 16  MDDWAAAMAEQESVEAQAEATVQPAHALFQEFGAAAASASVPQNLDMILDIPVQLTVELG 75

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+
Sbjct: 76  RTRIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 132

Query: 145 NA 146
             
Sbjct: 133 TP 134


>gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 353

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N +L+M++ + + + LG   M I +++ L +G +I LDK  GE VD+ +N + IAKGE
Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           + +++E   +FGVRV +I++ 
Sbjct: 327 VVVIDE---NFGVRVTDIVSP 344


>gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
           4541]
 gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
           4541]
          Length = 138

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 6/122 (4%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNIPVKMQIILG 84
            TN +     +E L Q+   ++ S  + +  N   +   +   + DLIM+IPV++ + LG
Sbjct: 11  STNHNDEDLWAEALEQQKQAESASAGMQNFENVDGQNPLNQFSDVDLIMDIPVRLSVELG 70

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              M I  L++LS+G V++LD   GE +DI IN   IA+GE+ ++ +   ++G+R+ +I+
Sbjct: 71  RTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIRITDII 127

Query: 145 NA 146
             
Sbjct: 128 TP 129


>gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
 gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
          Length = 135

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 10/130 (7%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-----SNNILEKSTDNFDLIMNIP 76
            D+     ++S+    +E + ++  V + S P + D      +  +  S  + DLIM+IP
Sbjct: 2   TDSNKPSDDISADDLWAEAMNEQ--VGSSSAPQTDDVFKSFDSGNVAGSLQDIDLIMDIP 59

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           VK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +
Sbjct: 60  VKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND---KY 116

Query: 137 GVRVIEILNA 146
           GVR+ +I+  
Sbjct: 117 GVRITDIITP 126


>gi|30248479|ref|NP_840549.1| flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718]
 gi|30138365|emb|CAD84374.1| possible flagellar motor switch FliN [Nitrosomonas europaea ATCC
           19718]
          Length = 157

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           P  D +  SP  +S  L   +             N++L  + ++ D+I++IPV++ + LG
Sbjct: 30  PTTDDDNGSPPPSSAHLAGDSLTKPSPVFEQFSRNDVLNDTRNDIDMILDIPVQLTVELG 89

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ L+   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+
Sbjct: 90  RTRIAIKNLLQLAQGSVVELNGMAGEPMDVLVNGCLIAQGEVVVVNE---KFGIRLTDII 146

Query: 145 NA 146
             
Sbjct: 147 TP 148


>gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus
           silvestris StLB046]
          Length = 422

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 62/95 (65%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           ++  S +S NI +    N +++++IP+++ + LG     +  ++ LS G +I LDK  GE
Sbjct: 322 AQFASFESANITQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGE 381

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            VDI +N++ IAKGE+ +++E   +FGVR+ +IL+
Sbjct: 382 PVDILVNSRLIAKGEVVVIDE---NFGVRITDILS 413


>gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42]
 gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42]
          Length = 378

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
            +      P        P                 E  + D N   + S +N D++M+IP
Sbjct: 244 PQPEPAMQPEPQAKPELPKRQGTAKKAAPVQVAPVEFQAFDHNEAAQGSRNNLDMLMDIP 303

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + + + LG     +  ++ LS G +I LDK  GE VDI +N + +AKGE+ ++EE   +F
Sbjct: 304 LSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE---NF 360

Query: 137 GVRVIEILN 145
           GVRV +IL+
Sbjct: 361 GVRVTDILS 369


>gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 145

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 31  VSSPTNNSEMLIQKNDVDNISEPI--SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
             +    +E  + K+ V+N ++ I  + D+ + L  +  + DLI++IPVK+ + LG   M
Sbjct: 22  AMNEQQTTENTLAKSAVENSADEIFQNLDNPSPLAGNLHDIDLILDIPVKLTVELGRTKM 81

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    FGVR+ +I+  
Sbjct: 82  TIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRITDIITP 136


>gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
           DSM 13965]
          Length = 132

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            DL++++P+++ + LG     +  L+ ++ G V+ LD+  GE VD+ +N + IA+GE+ +
Sbjct: 50  LDLLLDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVV 109

Query: 129 MEEDDTHFGVRVIEILNA 146
           ++E   +FG+R+ +I++ 
Sbjct: 110 IDE---NFGIRITDIVSP 124


>gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 375

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
             I    VD      +      +  S    DLI +IPV++ + LG     I  ++N+S G
Sbjct: 263 ASISTAPVDVRPAEFAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTIGEILNMSPG 322

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            V+ L++  GE VD+ +N + IA+GE+ +++E   +FGVRV EI++
Sbjct: 323 SVVELNRMAGEPVDVLVNGKLIARGEVVVIDE---NFGVRVTEIVS 365


>gi|300311367|ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074152|gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum
           seropedicae SmR1]
          Length = 151

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 72/135 (53%), Gaps = 5/135 (3%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
           +D+  G +M      ++        + + +     +  + + +S+D  +I   + ++ D 
Sbjct: 13  EDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSAD--DIKTNTPNDIDF 70

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +
Sbjct: 71  ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 130

Query: 132 DDTHFGVRVIEILNA 146
               FG+R+ +I+  
Sbjct: 131 ---KFGIRLTDIITP 142


>gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032]
 gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032]
          Length = 374

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 25/166 (15%)

Query: 2   IKKVSKISYIKDNLEG--RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSN 59
           I ++  I++ KD +         + P+Q+  VS+P         ++     + P    + 
Sbjct: 203 IMQLYPITFAKDLIAELTDPAQEEEPVQEAQVSTPEPQQAAPQTQSAPAQQAAPPKRQAK 262

Query: 60  NILEKSTD--------------------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
                  +                    N D++M+IP+ + + LG     +  ++ LS G
Sbjct: 263 PKPAAPVNVAPVEFEAFSEPQHSTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAG 322

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +I LDK  GE VDI +N + +AKGE+ +++E   +FGVRV +IL+
Sbjct: 323 SIIELDKLAGEPVDILVNKRIVAKGEVVVIDE---NFGVRVTDILS 365


>gi|299068764|emb|CBJ40004.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum CMR15]
          Length = 158

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           N + ++ +P+            ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 51  NALSSVFKPLLPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 110

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+  
Sbjct: 111 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 149


>gi|302343740|ref|YP_003808269.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
           2075]
 gi|301640353|gb|ADK85675.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
           2075]
          Length = 117

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
            +D +  L++   N D I++IP+++ + LG   M I++L+ L +G V+ L+K  GE ++I
Sbjct: 21  QADGDGALQRPAQNIDFILDIPLEVTVELGRTSMLINDLLQLGQGSVVELNKLAGEPLEI 80

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N + IA+GE+ ++ E    FGVR+ +I++ 
Sbjct: 81  LVNRKLIARGEVVVVNE---KFGVRLTDIVSP 109


>gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli
           95/1000]
 gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli
           95/1000]
          Length = 348

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 6   SKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS 65
            ++  ++  L   S    N   +   +S  NN++       +       +S       + 
Sbjct: 204 FELPVLQAILSNASKTTSN--ANKTSASSNNNTQANDNGKQLGVQHAEFNSLMPASDVQG 261

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T N  L+M++ + M + LG   M I +++ L +G +I L K  GE VD+ +N + IAKGE
Sbjct: 262 TGNIGLLMDVTMNMTVELGRATMTIKDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGE 321

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           + +++E   +FGVRV +I++ 
Sbjct: 322 VVVIDE---NFGVRVTDIISP 339


>gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein
           [Janthinobacterium sp. Marseille]
 gi|151280202|gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein
           [Janthinobacterium sp. Marseille]
          Length = 139

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSD--SNNILEKSTDNFDLIMNIPVKMQIIL 83
           ++D   ++     +      D    S  +  D    ++   + ++ D I++IPV++ + L
Sbjct: 11  VEDDWGAAMAEQEQTEAAAIDAKPASATVFKDFAGGDLKTGTHNDIDFILDIPVQLTVEL 70

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I
Sbjct: 71  GRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDI 127

Query: 144 LNA 146
           +  
Sbjct: 128 ITP 130


>gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
 gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
          Length = 129

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 9/128 (7%)

Query: 20  MHIDNPLQDTNVSSPTN-NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
           M    P    +  S  N   E + ++   DN+         N++   +++ DLI++IPVK
Sbjct: 1   MSDTTPTSGADKQSIDNLWGEAMSEQQTADNM-----PAKENLVPNFSEDLDLILDIPVK 55

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           M + LG   M I  L+ LS+G V++L+   GE +DI IN   IA+GE+ ++ +    FG+
Sbjct: 56  MTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD---KFGI 112

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 113 RITDIITP 120


>gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermincola sp. JR]
 gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermincola potens JR]
          Length = 412

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 3/104 (2%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
             N V       +  +     K+    DLIM++P+++ + LG     I  ++NL+ G V+
Sbjct: 304 PANSVPVQPAQFAPLNMGFEPKTPSTIDLIMDVPLQITVELGKAKKTIREILNLAPGSVV 363

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            LDK  GE VD+ +N + +AKGE+ +++E   +FG+R+ +I++ 
Sbjct: 364 ELDKLAGEPVDLMVNGKLLAKGEVVVIDE---NFGIRITDIVSP 404


>gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146]
 gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella
           ictaluri 93-146]
          Length = 137

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           ++  +   S  + DLIM+IPVK+ + LG   M I  L+ LS+G V+ LD   GE +D+ I
Sbjct: 42  ETPTLSVGSGQDIDLIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLI 101

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   IA+GE+ ++ +    FGVR+ +I+  
Sbjct: 102 NGYLIAQGEVVVVND---KFGVRITDIITP 128


>gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
 gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
          Length = 136

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
            D N +     +E L ++    + S             +  +  + DLIM+IPVK+ + L
Sbjct: 8   SDENGAMDDLWAEALNEQKTTGSKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVEL 67

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G   M I  L+ L++G V++LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I
Sbjct: 68  GRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDI 124

Query: 144 LNA 146
           +  
Sbjct: 125 ITP 127


>gi|260222422|emb|CBA31970.1| Flagellar motor switch protein fliN [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 162

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 71/146 (48%), Gaps = 14/146 (9%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSP--TNNSEMLIQKNDVDNISE-----PISSDSNNILEK 64
           K   E      D P +    +     + +E L+++   D   +     P+S D+      
Sbjct: 10  KTGWENAMASEDKPDEVQGAADDGMADWAEALLEQKSSDGAGDAAPGGPLSGDTPKPFTS 69

Query: 65  STD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
             D    + +++++IPV++ + LG   + I +++ L +G V+ LD   GE +D+ +N   
Sbjct: 70  GGDGHVNDINMVLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYL 129

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146
           IA+GE+ ++ +    FG+R+ +++  
Sbjct: 130 IAQGEVVVVND---KFGIRLTDVVTP 152


>gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB]
 gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB]
          Length = 135

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 10/130 (7%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-----SNNILEKSTDNFDLIMNIP 76
            D+     ++S+    +E + ++  V + S P + D      +  +  S  + DLIM+IP
Sbjct: 2   TDSNKPSDDISADDLWAEAMNEQ--VGSSSAPQTDDVFKSFDSANVAGSLQDIDLIMDIP 59

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           VK+ + LG   M I  L+ L++G V++LD   GE +DI IN   IA+GE+ ++ +    +
Sbjct: 60  VKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND---KY 116

Query: 137 GVRVIEILNA 146
           GVR+ +I+  
Sbjct: 117 GVRITDIITP 126


>gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 375

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 3/136 (2%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
           +K+    +        Q T+  S T   +    +   +       S       +  +N +
Sbjct: 239 VKEETLKQPASQPTNKQKTSPQSYTPPPKKEQPQQVYNVSPVQFESFDEEEERRYPENIE 298

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LI+++P+++ + LG     +  ++  S G +I L+K  GE VDI +N + IAKGE+ +++
Sbjct: 299 LILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVID 358

Query: 131 EDDTHFGVRVIEILNA 146
           E   +FGVR+ +I+N 
Sbjct: 359 E---NFGVRITDIVNP 371


>gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
           2876]
 gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
           2876]
          Length = 426

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
                 P Q   +  P   +       +V+         +        +N DLIM++P++
Sbjct: 304 PQGYAMPPQGYAMP-PQGYAMPSQNYENVNVQPASFQPFTGGNALPGHENIDLIMDVPLE 362

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG     I  ++  + G ++ L+K  GE +D+ +N + +AKGE+ ++EE    FGV
Sbjct: 363 VTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEVVVIEES---FGV 419

Query: 139 RVIEILN 145
           ++ EI+ 
Sbjct: 420 KITEIVK 426


>gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
 gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
          Length = 420

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
           D         + P+ +         S M   +      +     +   +    + N  ++
Sbjct: 282 DRSHHVDQSFEQPIHERTREQQHIGSGMHGGREVDVQPAAFSHFEPQPLSNHESKNLSML 341

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++IP+++ + LG     I  ++ L +G +I LDK  GE VDI +N + IAKGE+ ++EE 
Sbjct: 342 LDIPLQVTVELGRTKRSIKEILELGQGSIIELDKLAGEPVDILVNQKLIAKGEVVVIEES 401

Query: 133 DTHFGVRVIEILNAQ 147
              FGVRV +I++ +
Sbjct: 402 ---FGVRVTDIVSQE 413


>gi|242281270|ref|YP_002993399.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
           2638]
 gi|242124164|gb|ACS81860.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
           2638]
          Length = 229

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
               E L  +    +  +  +   N   + S  + D I++IP+ +   LG   M I+ L+
Sbjct: 113 EKEQEFLRTQTRDADFKDLTNEAKNPRHDGSRRDLDFILDIPLDVSAELGRAKMLINELL 172

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L  G V+ L K  GE ++I +N + +A+GE  ++ E    FG+R+ +I++ 
Sbjct: 173 QLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 221


>gi|15615008|ref|NP_243311.1| flagellar motor switch protein [Bacillus halodurans C-125]
 gi|10175065|dbj|BAB06164.1| flagellar motor switch protein [Bacillus halodurans C-125]
          Length = 401

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
            D +  +        Q  +        +  +Q     N   P  +D+         N D+
Sbjct: 268 TDPVHMQQPTQGGYRQSMSQPPLQTRRQANVQPAAFTNFEHPELNDTE------AGNLDM 321

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +++IP+++ + LG     I ++++ ++G +I LDK  GE VDI +N + IAKGE+ +++E
Sbjct: 322 LLDIPLQVTVELGRTKRSIKDILSFTQGSIIELDKLAGEPVDILVNQKLIAKGEVVVIDE 381

Query: 132 DDTHFGVRVIEILNAQ 147
              +FGVRV EIL+ +
Sbjct: 382 ---NFGVRVTEILSQR 394


>gi|291613060|ref|YP_003523217.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
           ES-1]
 gi|291583172|gb|ADE10830.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
           ES-1]
          Length = 135

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEP------ISSDSNNILEKSTDNFDLIMNIPVKMQ 80
           + T   S  +    + ++   D +++P                 + ++ D+I++IPVK+ 
Sbjct: 4   ETTEQISADDWGAAMAEQTSADAVAQPAVQPHVFEQFGGAGGATAHNDLDMILDIPVKLT 63

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   M I NL+ L++G V+ L    GE +D+ IN   IA+GE+ ++ +     G+R+
Sbjct: 64  VELGHTKMPIKNLLQLAQGSVVELAGLAGEPLDVLINGFLIAQGEVVVVND---KLGIRL 120

Query: 141 IEILNA 146
            +I+  
Sbjct: 121 TDIITP 126


>gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
           30120]
 gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
           30120]
          Length = 138

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 8/123 (6%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKSTDNFDLIMNIPVKMQIIL 83
            TN +     +E L Q+   ++ S  + +    D  N L + + + D+IM+IPV++ + L
Sbjct: 11  STNHNEEDLWAEALEQQKQAESASAGMQNFDSLDGQNPLTQLS-DVDMIMDIPVRLSVEL 69

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G   M I  L++LS+G V++LD   GE +DI IN   IA+GE+ ++ +   ++G+R+ +I
Sbjct: 70  GRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIRITDI 126

Query: 144 LNA 146
           +  
Sbjct: 127 ITP 129


>gi|229544405|ref|ZP_04433463.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           coagulans 36D1]
 gi|229324890|gb|EEN90567.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           coagulans 36D1]
          Length = 368

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI-SSDSNNILEKSTDNFDLIMNIPVKMQI 81
           D  ++      P   ++   ++    N+   + +S         T N D++++IP+++ +
Sbjct: 239 DQNMRGHAAEKPAEPAQNAAKQEMYQNVQPAVFTSFEETAPRVETKNLDMLLDIPLEVTV 298

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            LG     +  ++ +  G ++ LDK  GE VDI IN+Q IA GE+ +++E   +FGVRV 
Sbjct: 299 ELGRTSKTVREILEMGAGSIVELDKLAGEPVDILINHQLIAIGEVVVIDE---NFGVRVT 355

Query: 142 EILNAQ 147
           +I++ +
Sbjct: 356 DIVSQK 361


>gi|253998476|ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
 gi|313200551|ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688]
 gi|253985155|gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
 gi|312439867|gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688]
          Length = 145

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
            D   +                  +   +  +   + ++ ++ D I++IPV++ + LG  
Sbjct: 20  DDWGAAMAEQQQAEDSPLQAKPAQATVFTELTGKKMSETQNDIDFILDIPVQLTVELGRT 79

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 80  KIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 136


>gi|161523222|ref|YP_001578234.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
           17616]
 gi|189348921|ref|YP_001944549.1| flagellar motor switch protein [Burkholderia multivorans ATCC
           17616]
 gi|221214538|ref|ZP_03587508.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
 gi|160340651|gb|ABX13737.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
           17616]
 gi|189332943|dbj|BAG42013.1| flagellar motor switch protein [Burkholderia multivorans ATCC
           17616]
 gi|221165428|gb|EED97904.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
          Length = 159

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 63/112 (56%), Gaps = 6/112 (5%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             N + +        + +P+S  + +    + ++ ++I++IPVKM + LG   + I NL+
Sbjct: 45  EQNHQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGRTKIAIRNLL 101

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 102 QLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 150


>gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor owensensis OL]
 gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 3/136 (2%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
           +K+    + +      Q T   S T   +    +   +       S       K  +N +
Sbjct: 240 VKEEALKQPVSQPTNKQKTLPQSHTQPPKKEQPQKVYNVSPVQFESFDEEEERKYPENIE 299

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LI+++P+++ + LG     +  ++  S G +I L+K  GE VDI +N + IAKGE+ +++
Sbjct: 300 LILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVID 359

Query: 131 EDDTHFGVRVIEILNA 146
           E   +FGVR+ +I+N 
Sbjct: 360 E---NFGVRITDIVNP 372


>gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
 gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
          Length = 179

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM++PV++ + LG   + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ 
Sbjct: 93  DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 152

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++E+    +G+R+ +I+  
Sbjct: 153 VVED---KYGIRLTDIITP 168


>gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103]
 gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103]
 gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355]
          Length = 137

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)

Query: 27  QDTNVSSPTNNSEMLIQK----NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
            D  +S+    +E + ++           +   S   +    S  + DLIM+IPVK+ + 
Sbjct: 8   SDDTISADDLWAEAMNEQVGSATTASQSDDVFKSFETSNASGSLQDIDLIMDIPVKLTVE 67

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   M I  L+ L++G V++LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +
Sbjct: 68  LGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND---KYGVRITD 124

Query: 143 ILNA 146
           I+  
Sbjct: 125 IITP 128


>gi|221201777|ref|ZP_03574814.1| flagellar motor switch protein FliN [Burkholderia multivorans
           CGD2M]
 gi|221207718|ref|ZP_03580726.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
 gi|221172564|gb|EEE05003.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
 gi|221178197|gb|EEE10607.1| flagellar motor switch protein FliN [Burkholderia multivorans
           CGD2M]
          Length = 159

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 63/112 (56%), Gaps = 6/112 (5%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             N + +        + +P+S  + +    + ++ ++I++IPVKM + LG   + I NL+
Sbjct: 45  EQNQQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGRTKIAIRNLL 101

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 102 QLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 150


>gi|83747641|ref|ZP_00944677.1| FliN [Ralstonia solanacearum UW551]
 gi|207739722|ref|YP_002258115.1| flagellar motor switch protein flin [Ralstonia solanacearum
           IPO1609]
 gi|83725693|gb|EAP72835.1| FliN [Ralstonia solanacearum UW551]
 gi|206593104|emb|CAQ60010.1| flagellar motor switch protein flin [Ralstonia solanacearum
           IPO1609]
          Length = 154

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +D+ ++ +P+  D         ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 47  DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+  
Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 145


>gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 356

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+M++ + + + LG   M I +++ L +G +I LDK  GE VD+ +N + IAKGE+ 
Sbjct: 273 NLNLLMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVV 332

Query: 128 IMEEDDTHFGVRVIEILNA 146
           +++E   +FGVRV +I++ 
Sbjct: 333 VIDE---NFGVRVTDIVSP 348


>gi|292493589|ref|YP_003529028.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
 gi|291582184|gb|ADE16641.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
          Length = 152

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 9/125 (7%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDS------NNILEKSTDNFDLIMNIPVKMQI 81
           +    S +   +    K   ++ +EP +  +      +        N DLI++IPV M +
Sbjct: 23  EQAGDSGSRQGQTAASKAQAESSAEPYAPPTLEELATDPTAAAKDINLDLILDIPVTMAM 82

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            +G   + I +L+ L++G V+ L++  GE +D+ +N   IA GE+ ++ E    FG+R+ 
Sbjct: 83  EIGRTRISIRDLLKLNRGSVVELERLAGEPLDVLVNGCLIAHGEVVVVNE---KFGIRLT 139

Query: 142 EILNA 146
           ++++ 
Sbjct: 140 DVIST 144


>gi|207728360|ref|YP_002256754.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
 gi|206591606|emb|CAQ57218.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
          Length = 154

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +D+ ++ +P+  D         ++ D+I++IPV++ + LG   + I NL+ L++G V+ L
Sbjct: 47  DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+  
Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 145


>gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation
           [Thermoanaerobacter tengcongensis MB4]
          Length = 366

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 14/147 (9%)

Query: 11  IKDNLEGRSMHIDNPLQ-------DTNVSSPTNNSEMLIQKNDVDNIS----EPISSDSN 59
           +K  L+  +     P +           S     SE  I+K +  N+S    +    +  
Sbjct: 215 VKSVLQQATTSTSPPAEVKEMKKESKGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQ 274

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
              +  + N DLI+++P+ + + LG     I +++ L++G +I LDK  GE VDI  N +
Sbjct: 275 QEAKGESKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGK 334

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
            IAKGE+ +++E   +FGVR+ +I++ 
Sbjct: 335 YIAKGEVVVIDE---NFGVRITDIVHP 358


>gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
           43970]
 gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
           43970]
          Length = 129

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 3/99 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           + ++   S   +N++   +++ DLI++IPVKM + LG   M I  L+ LS+G V++L+  
Sbjct: 25  EQLAADSSPPKDNLVPNFSEDLDLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGL 84

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            GE +DI IN   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 85  AGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIITP 120


>gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 287

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 4/120 (3%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D   S     S  ++Q+NDV++++ P      +I +    N +L++++ V + + LG   
Sbjct: 165 DAVSSEVEKTSASVMQENDVEDVTFPQLRPEGDI-QPLPRNLELLLDVKVNVSVELGRSR 223

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + I +L++L  G +ITLDK  GE VDI +N + IAKGE+ +++E    FGVR+++I+  +
Sbjct: 224 VSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDES---FGVRILDIIAPK 280


>gi|33601557|ref|NP_889117.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
 gi|33575993|emb|CAE33073.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
          Length = 172

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           QD    +    +        V   ++ +             + DLIM++PV+M + LG  
Sbjct: 45  QDDWADALAEQNAAPAAAPAVQPAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVELGRT 104

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ ++++    +G+R+ +I+  
Sbjct: 105 RLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDD---KYGIRLTDIITP 161


>gi|323490152|ref|ZP_08095372.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
 gi|323396200|gb|EGA89026.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
          Length = 351

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 3/139 (2%)

Query: 8   ISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67
           +S + +  +          +    S+    SE    +       +  S D+ ++    T+
Sbjct: 208 VSMLNEQFDEEEQGTKEAGEMPKQSASGFQSEEQSPEAPTVQNVQFSSFDNTDVASSETN 267

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N +L+++IP+++ + LG     + +++ +S+G +I LDK  GE VDI INN+ IA GE+ 
Sbjct: 268 NLNLLLDIPLQVTVELGRTKRMVKDILEISQGSIIELDKLAGEPVDILINNKLIAVGEVV 327

Query: 128 IMEEDDTHFGVRVIEILNA 146
           +++E   +FGVRV ++L+ 
Sbjct: 328 VIDE---NFGVRVTDVLST 343


>gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
 gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
 gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
 gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
 gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
 gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
          Length = 144

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 67/126 (53%), Gaps = 5/126 (3%)

Query: 23  DNPLQDTNVSSPTNNS-EMLIQKNDVDNISEPISSDS-NNILEKSTDNFDLIMNIPVKMQ 80
           D+P      +       +  ++  D+ +   P++ D+  +  +    + +++++IPV++ 
Sbjct: 12  DDPFSGWAEALEEQRQHDQAVEGPDLSDQGGPLAGDAARSYGDVPVHDINMVLDIPVQLS 71

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+
Sbjct: 72  VELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRL 128

Query: 141 IEILNA 146
            +++  
Sbjct: 129 TDVVTP 134


>gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
           12260]
 gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
           12260]
          Length = 374

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
             I    VD          +        N DLI++IPV++ + LG     I  ++ +  G
Sbjct: 262 AAISTAPVDARPAEFLPLHSGDGAALPGNIDLIVDIPVRITVELGRARKTIGEVLGMGPG 321

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            V+ L++  GE VD+ +N + +A+GE+ +++E    FG+RV EI++
Sbjct: 322 SVVELNRMAGEPVDVLVNGKLMARGEVVVIDES---FGIRVTEIVS 364


>gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208]
 gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens LL3]
          Length = 377

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 29/169 (17%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDV--DNISEPISSDSN 59
           I ++  I++ KD +    M  D P  D  VS P    E    +  +  +  ++P      
Sbjct: 204 IMQLYPITFAKDLI-AELMDTDQPEADETVSEPRETYETPQPEPAIQQEPQAKPELPKRQ 262

Query: 60  NILEK-----------------------STDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
              +K                       S +N D++M+IP+ + + LG     +  ++ L
Sbjct: 263 GTAKKAAPVQVAPVEFQAFDQNAADGHGSRNNLDMLMDIPLSVTVELGRTKRSVKEILEL 322

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           S G +I LDK  GE VDI +N + +AKGE+ ++EE   +FGVRV +IL+
Sbjct: 323 SAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE---NFGVRVTDILS 368


>gi|317151985|ref|YP_004120033.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942236|gb|ADU61287.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 174

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
              +  +     D   + + S +         + D I++IP+++   LG   + I+ L+ 
Sbjct: 59  EKEQAFLSTQTHDYEFKDMGSAAKGASSSGKRDLDFILDIPLEVSAELGRTKLLINELLQ 118

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           L +G V+ L+K  GE ++I +N + +A+GE  ++ E    FG+R+ +I++ 
Sbjct: 119 LGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 166


>gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 362

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNN-SEMLIQKNDVDNISEPISSDSN 59
           +++++  IS        +S   D  + +     P    +E   +K  V  +      ++ 
Sbjct: 213 LVRELMSISKGIPFETSKSDDTDEHILENAPPEPQKPFNEKKAEKVSVKPVELEDFGEAE 272

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
              +KS+   DLIM++P+++ + LG    +I  ++ +  G +I L+K  GE VDI +N +
Sbjct: 273 TSGKKSS--LDLIMDVPLEISVELGRTVKKIKEILEIGPGSIIELEKLAGEPVDILVNGK 330

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
            IA+GE+ +++E    FGVR+ EILN+
Sbjct: 331 LIARGEVVVIDES---FGVRITEILNS 354


>gi|187478202|ref|YP_786226.1| flagellar motor switch protein [Bordetella avium 197N]
 gi|115422788|emb|CAJ49316.1| flagellar motor switch protein [Bordetella avium 197N]
          Length = 172

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V + ++ +          +  + DL+M++PV++ + LG   + I NL+ L +G V+ LD 
Sbjct: 65  VQSAAQTVFKPLTGKDNAAGADIDLVMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDG 124

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
             GE +DI +N   IA+GE+ ++EE    +G+R+ +I+  
Sbjct: 125 LAGEPMDIFVNGYLIAQGEVVVVEE---KYGIRLTDIITP 161


>gi|119899014|ref|YP_934227.1| flagellar motor switch FliN [Azoarcus sp. BH72]
 gi|119671427|emb|CAL95340.1| flagellar motor switch FliN [Azoarcus sp. BH72]
          Length = 159

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 5/145 (3%)

Query: 4   KVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD--SNNI 61
           ++S+  +     E  S       +   V++    +    +       +  I  D  S+  
Sbjct: 9   QISEDDWAAAMQEQASAEAGMDAESARVAADLAAAAAFDESPYQAKPASQIFEDFGSSGA 68

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
              + ++FD+I++IPV++ + LG   + I NL+ L+ G V+ LD   GE +D+ +N   I
Sbjct: 69  KPGALNDFDMILDIPVQLTVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLI 128

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
           A+GE+ ++ +    FG+R+ +I+  
Sbjct: 129 AQGEVVVVND---KFGIRLTDIITP 150


>gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans]
 gi|55977143|gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans]
 gi|133738988|emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans]
          Length = 141

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
                ++   + ++ D I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+
Sbjct: 44  DFSGGDLKTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDV 103

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 104 LVNGCLIAQGEVVVVND---KFGIRLTDIITP 132


>gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427]
 gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium lentocellum DSM 5427]
          Length = 403

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D N    T +  +   + DVD  +    S  N       +N DL+M++ +++ + LG   
Sbjct: 284 DPNYYGETYHKSVNNIRADVDVQTPQFQSFDNRPKVYPKENMDLLMDVSLEVSVELGRTS 343

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +I  ++    G +I L++ VGE VD+ +N + +A GE+ +++E   +FG+R+ +I+N +
Sbjct: 344 RKIKEILEFGPGSIIELNRLVGEPVDVLVNGKFVATGEVVVIDE---NFGIRITDIINPE 400


>gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y4.1MC1]
 gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y4.1MC1]
          Length = 395

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
            P +     +  +               +    + +   +    N  L++++P+++ + L
Sbjct: 268 EPSKTAAHETANHFGANAKSGERQIQSVDFAEFEPSPSADTEVKNLSLLLDVPLQVTVEL 327

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G     +  ++ LS G +I LDK  GE VDI +NN+ IAKGE+ +++E   +FGVRV +I
Sbjct: 328 GRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NFGVRVTDI 384

Query: 144 LN 145
           ++
Sbjct: 385 IS 386


>gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 366

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 14/147 (9%)

Query: 11  IKDNLEGRSMHIDNPLQ-------DTNVSSPTNNSEMLIQKNDVDNIS----EPISSDSN 59
           +K  L+  +     P +           S     SE  I+K +  N+S    +    +  
Sbjct: 215 VKSVLQQTTTSTSPPAEVKEMKKESKGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQ 274

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
              +  + N DLI+++P+ + + LG     I +++ L++G +I LDK  GE VDI  N +
Sbjct: 275 QEAKGESKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGK 334

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
            IAKGE+ +++E   +FGVR+ +I++ 
Sbjct: 335 YIAKGEVVVIDE---NFGVRITDIVHP 358


>gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
 gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
          Length = 138

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
           + D  +      DN + D    +          K   D +   + +        S  + D
Sbjct: 1   MSDTNKPSDAGSDN-VDDLWADAFNEQQSAGGAKASTDGVFAALGAQDGT---GSLQDID 56

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           +I++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ ++ 
Sbjct: 57  MILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVA 116

Query: 131 EDDTHFGVRVIEILNA 146
           +    +GVR+ +I+  
Sbjct: 117 D---KYGVRITDIITP 129


>gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
 gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
          Length = 379

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 4/130 (3%)

Query: 17  GRSMHIDNP-LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
                +  P L+     +P    +            E  + D N   +   +N D++M+I
Sbjct: 244 PEEAVMPEPRLESQPQPTPKRQGKPKKAAPVQVAPVEFSAFDPNEAPQAHLNNLDMLMDI 303

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+ + + LG     +  ++ LS G +I LDK  GE VDI +N + +AKGE+ ++EE   +
Sbjct: 304 PLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE---N 360

Query: 136 FGVRVIEILN 145
           FGVRV +IL+
Sbjct: 361 FGVRVTDILS 370


>gi|293605020|ref|ZP_06687415.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
           ATCC 43553]
 gi|292816589|gb|EFF75675.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
           ATCC 43553]
          Length = 101

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                 S  + DLIM++PV++ + LG   + I NL+ L +G V+ LD   GE +DI +N 
Sbjct: 6   AGATAGSGTDIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNG 65

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
             IA+GE+ ++E+    +G+R+ +I+  
Sbjct: 66  YLIAQGEVVVVED---KYGIRLTDIITP 90


>gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 395

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNI 61
           V + +  + ++   ++      + +  ++    +         +   + +     + +  
Sbjct: 246 VQEAAVSQPSVTAEAIGAQPSYEPSKTAAHETANHFGANAKSGERQIQSVDFAEFEPSPS 305

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            +    N  L++++P+++ + LG     +  ++ LS G +I LDK  GE VDI +NN+ I
Sbjct: 306 ADTEVKNLSLLLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLI 365

Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
           AKGE+ +++E   +FGVRV +I++
Sbjct: 366 AKGEVVVIDE---NFGVRVTDIIS 386


>gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 398

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 3   KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNIL 62
           + V++ ++ + N + +    +            +N   L  ++     +   + ++  + 
Sbjct: 251 ETVTQQAFPQTNEQPQMDATNQHQSARQEPQFVSNGSRLPDRSAEVQPAAFSNFETPQLG 310

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
                N D++++IP+++ + LG     I +++ L++G +I LDK  GE VDI +N + IA
Sbjct: 311 NNEAKNLDMLLDIPLEVTVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIA 370

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           KGE+ +++E   +FGVRV +I++ +
Sbjct: 371 KGEVVVIDE---NFGVRVTDIVSKR 392


>gi|34498584|ref|NP_902799.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
 gi|34104438|gb|AAQ60796.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
          Length = 147

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 7/139 (5%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP----ISSDSNNILEKSTD 67
           ++ L+G +   +  +   + ++     E +  ++ V+  + P            +     
Sbjct: 3   EEELQGGAAGAEEEVSMDDWAAAMAEQETVETQHAVEAEAVPAQGLFQEIGAGAVAGGPP 62

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I++IPV++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ 
Sbjct: 63  NLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 122

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    FG+R+ +I+  
Sbjct: 123 VVND---KFGIRLTDIITP 138


>gi|170694406|ref|ZP_02885560.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
 gi|170140829|gb|EDT09003.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
          Length = 155

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 6/119 (5%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D   +    N            + +P+S  +      + ++ D+I++IPV+M + LG   
Sbjct: 34  DWASALAEQNDNTSEISATTAGVFQPLSKVAPTT---TRNDIDMILDIPVQMTVELGRTK 90

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 91  LAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 146


>gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 384

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS-TDNFDLIMNI 75
            R      P       +  +          VD      S      ++ S   N  LI +I
Sbjct: 248 QRPAQQQAPRPSGGGGAGMSQPPSGEASPPVDVRPAQFSPLQPAAVDSSLPSNIGLIADI 307

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           PV++ + LG     +  +++ + G VI LDK  GE VD+ +N + IAKGE+ +++E   +
Sbjct: 308 PVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDE---N 364

Query: 136 FGVRVIEILN 145
           FGVRV EILN
Sbjct: 365 FGVRVTEILN 374


>gi|283853449|ref|ZP_06370693.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
 gi|283571169|gb|EFC19185.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
          Length = 190

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             + + L +++                 E    + D I++IP+ +   LG   + I+ L+
Sbjct: 74  ERDQDALSRQSASAQFKNLTQEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELL 133

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L +G VI L+K  GE ++I +N + +A+GE  ++ E    FGVR+ +I++ 
Sbjct: 134 QLGQGSVIELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGVRLTDIISP 182


>gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661]
 gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
          Length = 133

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 69/127 (54%), Gaps = 3/127 (2%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           M   N   + ++S+    ++ + ++    +      S  +N +  S  + DLIM+IPVK+
Sbjct: 1   MSDTNKPSEDDISADDLWADAMNEQASTPSSEGVFKSLESNDITGSLQDIDLIMDIPVKL 60

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + LG   M I  L+ L++G V++L+   GE +DI IN   IA+GE+ ++ +    +GVR
Sbjct: 61  TVELGRTKMTIKELLRLTQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117

Query: 140 VIEILNA 146
           + +I+  
Sbjct: 118 ITDIITP 124


>gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 375

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMN 74
            +     +         P+       Q   V N+S P+  +S +  E+    +N +LI++
Sbjct: 244 PKQPSSQSTKTQKAAPQPSYTPPKKEQPQQVYNVS-PVQFESFDEEEERRYPENIELILD 302

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +P+++ + LG     +  ++  S G +I L+K  GE VDI +N + IAKGE+ +++E   
Sbjct: 303 VPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE--- 359

Query: 135 HFGVRVIEILNA 146
           +FGVR+ +I+N 
Sbjct: 360 NFGVRITDIVNP 371


>gi|323527700|ref|YP_004229853.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
 gi|323384702|gb|ADX56793.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
          Length = 155

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 6/119 (5%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D   +    N            + +P+S  +      + ++ D+I++IPV+M + LG   
Sbjct: 34  DWASALAEQNDNSSEVSASTAGVFQPLSKVAPT---STRNDIDMILDIPVQMTVELGRTK 90

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 91  LAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 146


>gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans
           BC]
 gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           BC]
          Length = 151

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEML--IQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           G     D+P      +     S     I       +S   +       +    + +++++
Sbjct: 13  GDGAAADDPFAGWAEALEEQKSADARTIDAEQGGPLSGEPARAFAGGGDAPAQDINMVLD 72

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +   
Sbjct: 73  IPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND--- 129

Query: 135 HFGVRVIEILNA 146
            FG+R+ +++  
Sbjct: 130 KFGIRLTDVVTP 141


>gi|226313057|ref|YP_002772951.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
           100599]
 gi|226096005|dbj|BAH44447.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
           100599]
          Length = 455

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 4/142 (2%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILE 63
           +   +Y +  +           Q   ++ PT         N  + +    +      +  
Sbjct: 308 MYPDAYGQQMMPPGYAPYPGMYQQPPMAPPTPQHFGGPAANQANVVPAQFAPLGGAPMYT 367

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
               N +L+ +IP+++ + LG     I  +++LS G +I LDK  GE VDI +NN+ IAK
Sbjct: 368 GDIQNLNLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAK 427

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ +++E   +FGVRV +I++
Sbjct: 428 GEVVVIDE---NFGVRVTDIIS 446


>gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
 gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
          Length = 188

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ++  + D+IM+IPV++ + LG   + I N++ L +G V+ LD   GE +DI +N   IA+
Sbjct: 98  ENNSDIDMIMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVNGYLIAQ 157

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ +++E    +G+RV +I+  
Sbjct: 158 GEVVVVDE---KYGIRVTDIITP 177


>gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 156

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 24  NPLQDTNVSSPTNNS-EMLIQKNDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQI 81
            P +  + +  +    + +I  + +D       S      + + D N D+I+++PV + +
Sbjct: 27  TPARRASPTRRSLPGLQQMINSDTLDASPATFDSLQAEQDQNAADLNLDVILDVPVTLSL 86

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ ++ +    FG+R+ 
Sbjct: 87  EVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND---RFGIRLT 143

Query: 142 EILNA 146
           ++++ 
Sbjct: 144 DVVSP 148


>gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|973195|gb|AAB00544.1| FliY [Treponema pallidum]
 gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 348

 Score =  121 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
            Q  N      N +M I        S       N        N  LIM++ +++ + LG 
Sbjct: 224 AQVGNSQMGGVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFMEVTVELGR 283

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             M I +++ + +G +I LDK  GE VDI +N++ IAKGE+ +++E   +FGVRV EIL+
Sbjct: 284 TRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDE---NFGVRVTEILS 340

Query: 146 A 146
            
Sbjct: 341 P 341


>gi|187925748|ref|YP_001897390.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
           PsJN]
 gi|187716942|gb|ACD18166.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
           PsJN]
          Length = 154

 Score =  121 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 6/117 (5%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
             S+    ++          + +P+S         + ++ D+I++IPV+M + LG   + 
Sbjct: 35  WASALAEQNDNSEVSATTAGVFQPLSKVEPTT---TRNDIDMILDIPVQMTVELGRTKIA 91

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 92  IRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 145


>gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans
           C54]
          Length = 100

 Score =  121 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DLIM++PV++ + LG   + I NL+ L +G V+ LD   GE +DI +N   IA+GE+ 
Sbjct: 14  DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 73

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++E+    +G+R+ +I+  
Sbjct: 74  VVED---KYGIRLTDIITP 89


>gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8]
          Length = 154

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
             +        E  +D  +L+++IP+K+ + LG   M +  ++ +  G +I LDK  GE 
Sbjct: 54  AELKPSETRKTEVPSDKLELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 113

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           VDI +N + IA+GE+ +++E   +FGVR+ EI++ +
Sbjct: 114 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 146


>gi|220934502|ref|YP_002513401.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995812|gb|ACL72414.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
          Length = 154

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 7/123 (5%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEP----ISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
           +T        ++    K + D + +     ++S+S     +   N D++++IPV + + +
Sbjct: 27  ETEAKPEDKPAKGKGAKAESDAVQKASFDSLASESRAPATQEDVNLDVVLDIPVTISMEI 86

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G   M I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++
Sbjct: 87  GRTRMPIRNLLQLNQGSVVELDRLAGEPLDVYVNGTLIAHGEVVVVNE---KFGIRLTDV 143

Query: 144 LNA 146
           ++ 
Sbjct: 144 ISP 146


>gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118]
 gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118]
          Length = 139

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 73/134 (54%), Gaps = 13/134 (9%)

Query: 20  MHIDN-PLQDTNVSSPTNNSEMLIQKNDVDNISEP------ISSDSNNILEKSTDNFDLI 72
           M ID  P +D  ++   + +E L+++   +  +EP       +S S +  +    + + +
Sbjct: 1   MAIDEKPAEDDGMA---DWAEALLEQKSSEPTAEPGGVLAGDTSHSFSSSDAPISDINRV 57

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++IPV++ + LG   + I +++ L +G V+ LD   GE +D+ +N   IA+GE+ ++ + 
Sbjct: 58  LDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND- 116

Query: 133 DTHFGVRVIEILNA 146
              FG+R+ +++  
Sbjct: 117 --KFGIRLTDVVTP 128


>gi|303246796|ref|ZP_07333073.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
           JJ]
 gi|302491813|gb|EFL51693.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
           JJ]
          Length = 202

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             + E L +++                 E    + D I++IP+ +   LG   + I+ L+
Sbjct: 86  ERDQETLSRQSAAAQFKNLTQEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELL 145

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L +G VI L+K  GE ++I +N + +A+GE  ++ E    FGVR+ +I++ 
Sbjct: 146 QLGQGSVIELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGVRLTDIISP 194


>gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 375

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%)

Query: 3   KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNI 61
           +K S++++ +++      + +  ++  N  SP        QK +V  +  +    DS++ 
Sbjct: 226 EKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSK 285

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            +K  +N DLI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  N + I
Sbjct: 286 GKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYI 345

Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
           AKGE+ +++E   +FGVR+I+I+
Sbjct: 346 AKGEVVVIDE---NFGVRIIDIV 365


>gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
 gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
          Length = 360

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 37  NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
           +++       +       +S       + T N  L+M++ + M + LG   M I +++ L
Sbjct: 245 DNQAFDSGPQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIRDILGL 304

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +G +I L K  GE VD+ +N + IAKGE+ +++E   +FGVRV +I+N 
Sbjct: 305 GEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE---NFGVRVTDIINP 351


>gi|71906404|ref|YP_283991.1| Type III secretion system outer membrane O protein [Dechloromonas
           aromatica RCB]
 gi|71846025|gb|AAZ45521.1| Type III secretion system outer membrane O protein [Dechloromonas
           aromatica RCB]
          Length = 147

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 11/132 (8%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI--------SSDSNNILEKSTDNFDLIMN 74
             P++D    S  + +  + ++   D  +           S   N       +  D+I++
Sbjct: 10  STPVEDDGQISEDDWAAAMSEQAISDAPAAMAAQPADIFPSFGGNAGNAGMMNELDMILD 69

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV++ + LG   + I NL+ L+ G V+ LD   GE +D+ +N   IA+GE+ ++ +   
Sbjct: 70  IPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVVND--- 126

Query: 135 HFGVRVIEILNA 146
            FG+R+ +I+  
Sbjct: 127 KFGIRLTDIITP 138


>gi|300693351|ref|YP_003749324.1| flagellar motor switching and energizing component. flin/mopa/spao
           family [Ralstonia solanacearum PSI07]
 gi|299075388|emb|CBJ34683.1| flagellar motor switching and energizing component. fliN/mopA/spaO
           family [Ralstonia solanacearum PSI07]
          Length = 169

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 4/103 (3%)

Query: 45  NDVDNISEPIS-SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           ND++++ +P+   DS        ++ D+I++IPV++ + LG   + I NL+ L++G V+ 
Sbjct: 61  NDINSVFKPLVVDDSKKPSPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVE 120

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           LD   GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+  
Sbjct: 121 LDALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 160


>gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 375

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%)

Query: 3   KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNI 61
           +K S++++ +++      + +  ++  N  SP        QK +V  +  +    DS++ 
Sbjct: 226 EKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSK 285

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            +K  +N DLI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  N + I
Sbjct: 286 GKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYI 345

Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
           AKGE+ +++E   +FGVR+I+I+
Sbjct: 346 AKGEVVVIDE---NFGVRIIDIV 365


>gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
 gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
          Length = 137

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
               + E      ++++ S+   + +       T N D+I++IPV + + +GS  + I N
Sbjct: 20  EEQADDEAKAASPELEDFSQQARAAAIG-GGPGTPNLDVILDIPVTLSMEVGSTNISIRN 78

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           L+ L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ Q
Sbjct: 79  LLQLNQGSVIELDRLAGEPLDVMVNGTLIAHGEVVVVNE---KFGIRLTDVISPQ 130


>gi|85060032|ref|YP_455734.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
 gi|84780552|dbj|BAE75329.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
          Length = 132

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
            +   D    +         +    D I  P++    N    S  + DLIM+IPVKM + 
Sbjct: 7   PSAADDLWAEALVQQGGDRERAVSTDGIFSPLAGKGGN---GSLQDIDLIMDIPVKMTVE 63

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ + +     +GVR+  
Sbjct: 64  LGRTKMTIKELLRLAQGSVVALDGLAGEPLDILINGYLIAQGEVVVAD----KYGVRITS 119

Query: 143 ILNA 146
           I+  
Sbjct: 120 IITP 123


>gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
           12563]
 gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
           12563]
          Length = 359

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 37  NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
           +++       +       +S       + T N  L+M++ + M + LG   M I +++ L
Sbjct: 244 DNQAFDSGPQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIRDILGL 303

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +G +I L K  GE VD+ +N + IAKGE+ +++E   +FGVRV +I+N 
Sbjct: 304 GEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE---NFGVRVTDIINP 350


>gi|256830497|ref|YP_003159225.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
           4028]
 gi|256579673|gb|ACU90809.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
           4028]
          Length = 188

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 13/141 (9%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD----------SNNILEKS 65
           E  S   D  L D    +  +  E  IQ           S D               E  
Sbjct: 43  EQDSGGSDQALADEWAKALADEEETKIQHEKKQKQLAAQSKDFEYKDLTAEAKAPRPEAL 102

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
             + D I++IP+++   LGS  + I+ L+ L +G VI L+K  GE ++I +N + +A+GE
Sbjct: 103 RKDLDFILDIPLEVSAQLGSTKLLINELLQLGQGSVIELNKLAGEPLEILVNGKLVARGE 162

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
             ++ E    FGVR+ +I++ 
Sbjct: 163 AVVINE---KFGVRLTDIISP 180


>gi|209522294|ref|ZP_03270921.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
 gi|209497270|gb|EDZ97498.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
          Length = 153

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D    D   S+    +           + +P+S         + ++ D+I++IPV+M + 
Sbjct: 27  DEAALDDWASALAEQNGNDEINPAAGGVFQPLSKVEPT---STHNDIDMILDIPVQMTVE 83

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +
Sbjct: 84  LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 140

Query: 143 ILNA 146
           I+  
Sbjct: 141 IITP 144


>gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 375

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%)

Query: 3   KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNI 61
           +K S++++ +++      + +  ++  N  SP        QK +V  +  +    DS++ 
Sbjct: 226 EKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSK 285

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            +K  +N DLI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  N + I
Sbjct: 286 GKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYI 345

Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
           AKGE+ +++E   +FGVR+I+I+
Sbjct: 346 AKGEVVVIDE---NFGVRIIDIV 365


>gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
 gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
          Length = 385

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 21/164 (12%)

Query: 2   IKKVSKISYIKDNLEG----------RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS 51
           I ++  IS+ K  +E            S+  ++ L +     P        +    + + 
Sbjct: 218 IMQLLSISFAKSLVEELLVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPVH 277

Query: 52  EPISSDSNNILE--------KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
            P+     +  E         ++ N D++++IP+++ + LG     +  ++ LS G +I 
Sbjct: 278 VPVDVQPASFSEFEHMSSPQGNSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIE 337

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           LDK  GE VDI IN++ IAKGE+ +++E   +FGVRV +I++ +
Sbjct: 338 LDKLAGEPVDILINSKLIAKGEVVVIDE---NFGVRVTDIISQK 378


>gi|239909253|ref|YP_002955995.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
 gi|239799120|dbj|BAH78109.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
          Length = 186

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             + E L +++      +          +    + D I++IP+ +   LG   + I+ L+
Sbjct: 70  ERDQEALSRQSAKAKFKDMTPEAKAQRPDNIRRDLDFILDIPLDVSAELGRTKLLINELL 129

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L +G VI L+K  GE ++I +N + +A+GE  ++ E    FGVR+ +I++ 
Sbjct: 130 QLGQGSVIELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGVRLTDIISP 178


>gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga sp. RQ2]
 gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga sp. RQ2]
          Length = 346

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
             +        E  +D  +L+++IP+++ + LG   M +  ++ +  G +I LDK  GE 
Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           VDI +N + IA+GE+ +++E   +FGVR+ EI++ +
Sbjct: 306 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 338


>gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 375

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 6/132 (4%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMN 74
            +     +         P        Q   V N+S P+  +S +  E+    +N +LI++
Sbjct: 244 PKQPSSQSTKTQKAAPQPFYTPPKKEQPQQVYNVS-PVQFESFDEEEERRYPENIELILD 302

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +P+++ + LG     +  ++  S G +I L+K  GE VDI +N + IAKGE+ +++E   
Sbjct: 303 VPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE--- 359

Query: 135 HFGVRVIEILNA 146
           +FGVR+ +I+N 
Sbjct: 360 NFGVRITDIVNP 371


>gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 422

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 4/136 (2%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
             ++ +     +    Q T         E    K D   +         +  +    N +
Sbjct: 283 GPESGQSPEREVSTQGQPTGQGEQQMKQEQ-QPKKDYQPVEFSPLEGHQSAAKGENSNIE 341

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LIM++P+++ + LG    +I  ++ L  G +I LDK  GE VDI +N + IAKGE+ +++
Sbjct: 342 LIMDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVID 401

Query: 131 EDDTHFGVRVIEILNA 146
           E   +FG+R+ EI++ 
Sbjct: 402 E---NFGIRITEIISP 414


>gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16]
 gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16]
          Length = 395

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 61/91 (67%), Gaps = 3/91 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           ++    E    N D++++IP+++++ LG     I  ++++++G +I LDK  GE VD+ I
Sbjct: 301 ETTKPDEAEMQNLDMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLAGEPVDVLI 360

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           N++ IAKGE+ +++E   +FGVR+ +I++ +
Sbjct: 361 NDKLIAKGEVVVIDE---NFGVRITDIVSKK 388


>gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
 gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
          Length = 138

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK----STDNFDLIMNIPVKMQ 80
           P  +   S     ++   ++   +  S         +  +    S  + DLI++IPVK+ 
Sbjct: 7   PSGEGKESVDDLWADAFNEQQSSEKTSAATEGVFKTLEAQDAIGSLQDIDLILDIPVKLT 66

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    FGVR+
Sbjct: 67  VELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRI 123

Query: 141 IEILNA 146
            +I+  
Sbjct: 124 TDIITP 129


>gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
           11-1]
          Length = 109

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           N+    ++  +  S   L  +  N D+I+++PV + + +G   M I NL+ L++G VI L
Sbjct: 3   NESAAAAQFDALQSEPGLAGNDLNLDVILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIEL 62

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++  GE +D+ +N   IA GE+ ++ +    FGVR+ ++++ 
Sbjct: 63  ERGAGEPLDVYVNGTLIAHGEVVVIND---RFGVRLTDVVSP 101


>gi|167834867|ref|ZP_02461750.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           MSMB43]
          Length = 130

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             N + +        +  P+S     +   + ++ DLI++IPVKM + LG   + I NL+
Sbjct: 16  EQNQQPIETGATGAGVFRPLS---KAVASSTHNDIDLILDIPVKMTVELGRTKIAIRNLL 72

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 73  QLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 121


>gi|237653570|ref|YP_002889884.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
 gi|237624817|gb|ACR01507.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
          Length = 155

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           +      + ++FD+I++IPV++ + LG   + I NL+ L+ G V+ LD   GE +D+ +N
Sbjct: 61  APAGKPGALNDFDMILDIPVQITVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVN 120

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 121 GTLIAQGEVVVVND---KFGIRLTDIITP 146


>gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
 gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
          Length = 157

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
               NN+L  + ++ D+I++IPV++ + LG   + I NL+ L++G VI LD   GE +D+
Sbjct: 60  QFSRNNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPMDV 119

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA+GE+ ++ E    FG+R+ +I+  
Sbjct: 120 LVNGCLIAQGEVVVVNE---KFGIRLTDIITP 148


>gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
 gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
          Length = 134

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 9/124 (7%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           + PL +T+  S  + +     + +    S      +       T++  LI++IPVKM + 
Sbjct: 11  EAPLHETDGQSLGDTACPAPSRPEFPPAS------TTEGGSPLTEDLSLILDIPVKMTVE 64

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   M I  L++LS+  V+ L+ + GE +DI IN   IA+GE+ +M E    +GVR+ +
Sbjct: 65  LGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEVVVMGE---QYGVRIAD 121

Query: 143 ILNA 146
           I+  
Sbjct: 122 IVTP 125


>gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
 gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
          Length = 138

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
            +++  S   D+       +     S         +NI +          + S  + DLI
Sbjct: 2   SDIKKPSEETDSVDDLWADAFNEQQSAEKGASGSTENIFKNFDVQD---TQGSMQDIDLI 58

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ + 
Sbjct: 59  LDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSD- 117

Query: 133 DTHFGVRVIEILNA 146
              +GVR+ +I+  
Sbjct: 118 --KYGVRITDIITP 129


>gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
 gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
          Length = 142

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 8/125 (6%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDS-----NNILEKSTDNFDLIMNIPVKMQI 81
           QD   +      E     ++V   +E ++  S           + ++ ++I++IPV++ +
Sbjct: 10  QDAMAAEWAAALEQQSPGSEVVTTAEQVAPASFANFAPTPGGGAGNDINMILDIPVQLTV 69

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            LG   + I +++ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ 
Sbjct: 70  ELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLT 126

Query: 142 EILNA 146
           +I+  
Sbjct: 127 DIVTP 131


>gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 127

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           + D N SS + +  M     +  N      S     + + ++  +LI++IPVKM + LG 
Sbjct: 1   MSDMNNSSGSEDKSMDNLWGEALNEQNAAGSTEQTAVPQFSEEMNLILDIPVKMTVELGR 60

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ ++ +    FG+R+ +I+ 
Sbjct: 61  TKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIIT 117

Query: 146 A 146
            
Sbjct: 118 P 118


>gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 378

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 5/117 (4%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
           + + P   +E   Q  +V  +     S       +  +N +LI+++P+++ + LG     
Sbjct: 263 SYTPPPQRTEQPQQVYNVSPVQ--FESFDEEEERRYPENIELILDVPLEITVELGRTQKL 320

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +  ++  S G +I L+K  GE VDI +N + IAKGE+ +++E   +FGVR+ +I+N 
Sbjct: 321 VREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVNP 374


>gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a]
          Length = 414

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 10  YIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69
           Y   N          P+Q      P  N     Q    ++   P+ S+         +N 
Sbjct: 279 YGYPNPAMNPAMYGQPVQPVMQPQPAVNYRNA-QLAQFESFEAPLGSE-------QKENL 330

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
            L+M++P+++ + +GS   +I +++  S+G +I L+++ G  VD+ +N   IA+G++ ++
Sbjct: 331 QLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVI 390

Query: 130 EEDDTHFGVRVIEILNAQ 147
           ++   +F VR+ EI+ ++
Sbjct: 391 DD---NFAVRITEIVKSK 405


>gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 376

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 5/118 (4%)

Query: 31  VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCM 88
              P+       ++        P+  +S +  E+    +N +LI+++P+++ + LG    
Sbjct: 258 APQPSYTPPPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQK 317

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +  ++  S G +I L+K  GE VDI +N + IAKGE+ +++E   +FGVR+ +I+N 
Sbjct: 318 LVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVNP 372


>gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
 gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
          Length = 138

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
            +++  S   D+       +     S      +  + I +          + S  + DLI
Sbjct: 2   SDIKKPSEETDSVDDLWADAFNEQQSAEKSASSSTEGIFKNFDVQD---TQGSMQDIDLI 58

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++IPVK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ + 
Sbjct: 59  LDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSD- 117

Query: 133 DTHFGVRVIEILNA 146
              +GVR+ +I+  
Sbjct: 118 --KYGVRITDIITP 129


>gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
 gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
          Length = 137

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 15/130 (11%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE------------KSTDNFDLIMNIP 76
           ++   P+   +  +     D  +E +++D  +  +             S  + DLI++IP
Sbjct: 2   SDPKQPSGEGKESVDDLWADAFNEQLATDKTSASDAVFKSLEPQDASGSLQDIDLILDIP 61

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           VK+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    F
Sbjct: 62  VKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVAD---KF 118

Query: 137 GVRVIEILNA 146
           GVR+ +I+  
Sbjct: 119 GVRITDIITP 128


>gi|323700137|ref|ZP_08112049.1| flagellar motor switch protein FliN [Desulfovibrio sp. ND132]
 gi|323460069|gb|EGB15934.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
           ND132]
          Length = 183

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
              +  +     D     +  D+         + D I++IP+++   LG   + I+ L+ 
Sbjct: 68  EKEQAFLSTQTHDYELPDMGPDAKAGSSSGKRDLDFILDIPLEVSAELGRTKLLINELLQ 127

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           L +G V+ L+K  GE ++I +N + +A+GE  ++ E    FG+R+ +I++ 
Sbjct: 128 LGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 175


>gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
 gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
          Length = 136

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           N  +   +    + I + +  D+ +    +  + DLI++IPVK+ + LG   M I  L+ 
Sbjct: 23  NEQQTAEKAGSAEGIFKTLDVDTAS---GTAQDIDLILDIPVKLTVELGRTKMTIKELLR 79

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I+  
Sbjct: 80  LSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITP 127


>gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Tepidanaerobacter sp. Re1]
 gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Tepidanaerobacter sp. Re1]
          Length = 376

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           Q+  ++ P        Q  +V        +         + + +LI+++P+++ + LG  
Sbjct: 252 QEAVLTMPQKEPLKSAQNAEVTVKPVEFHTFKEEPTAAQSSSLNLILDVPLEVTVELGRT 311

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              I  ++ +S G +I LDK  GE  DI +N + +AKGE+ +++E   +FGVR+ EI+N+
Sbjct: 312 EKTIKEILEISSGTIIELDKMAGEPADILVNGKLVAKGEVVVIDE---NFGVRITEIINS 368


>gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
 gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
          Length = 346

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
             +        E  +D  +L+++IP+++ + LG   M +  ++ +  G +I LDK  GE 
Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           VDI +N + IA+GE+ +++E   +FGVR+ EI++ +
Sbjct: 306 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 338


>gi|301165894|emb|CBW25467.1| flagellar motor switch protein FliN [Bacteriovorax marinus SJ]
          Length = 131

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 4/118 (3%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
            N S+P  N E  I    V  +S+ I +  + + +    N D I++IP+K+ + LG   +
Sbjct: 10  ENQSNPMANVED-INTARVSQLSDEIKAGDDALNKLKVQNLDFILDIPLKVTVELGRTEV 68

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            I +L+ L +G V+ LDK  GE ++I +N + +AKGE+ ++ E    FG+R+ +I++ 
Sbjct: 69  MIKDLLQLGQGSVLELDKLAGEPLEILVNGKLVAKGEVVVVNE---KFGIRLTDIISP 123


>gi|330826723|ref|YP_004390026.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           K601]
 gi|329312095|gb|AEB86510.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           K601]
          Length = 151

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEML--IQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           G     D+P      +     S     I       +S   +       +    + +++++
Sbjct: 13  GDGAAADDPFAGWAEALEEQKSADARTIDAEQGGPLSGEPARAFAGGGDAPVQDINMVLD 72

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +   
Sbjct: 73  IPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND--- 129

Query: 135 HFGVRVIEILNA 146
            FG+R+ +++  
Sbjct: 130 KFGIRLTDVVTP 141


>gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70]
 gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. WCH70]
          Length = 401

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
              + +   +    N  L++++P+++ + LG     +  +++LS G +I LDK  GE VD
Sbjct: 304 AEFEPSPPADAEVKNLSLLLDVPLQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVD 363

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I +NN+ IAKGE+ +++E   +FGVRV +I++
Sbjct: 364 ILVNNKLIAKGEVVVIDE---NFGVRVTDIIS 392


>gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937]
 gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937]
          Length = 138

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 22  IDNPLQDTNVS----SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
           I  P ++T+      +   N +   +K+          +      + S  + DLI++IPV
Sbjct: 4   IKKPSEETDSVDDLWADAFNEQQSAEKSAPGGTEGIFKNFDVQDTQGSMQDIDLILDIPV 63

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           K+ + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    +G
Sbjct: 64  KLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSD---KYG 120

Query: 138 VRVIEILNA 146
           VR+ +I+  
Sbjct: 121 VRITDIITP 129


>gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10]
 gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga naphthophila RKU-10]
          Length = 346

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
             +        E  +D  +L+++IP+++ + LG   M +  ++ +  G +I LDK  GE 
Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           VDI +N + IA+GE+ +++E   +FGVR+ EI++ +
Sbjct: 306 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 338


>gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 97

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
                    ST   DL++++P+++ + LG   M I +L+ L+ G VI LDK  GE +DI 
Sbjct: 2   EAQTPRNGDSTRRLDLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +N + +A+GE  ++ +    FGVR+ +I++ Q
Sbjct: 62  VNGRLVARGEAVVVND---KFGVRITDIVSPQ 90


>gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402]
          Length = 393

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 15  LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           + G  M   +P Q  N+ +  N   M                    + ++   N  LIM+
Sbjct: 258 MFGSGMPQGSPQQGGNMQAMNNMGMMPQMGMGASVQPVQFPPLQGFVSQEEQGNIGLIMD 317

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + ++M + LG     I  ++ + +G +I LDK  GE VD+ +N++ IAKGE+ ++EE   
Sbjct: 318 VYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES-- 375

Query: 135 HFGVRVIEILNA 146
            FGVR+ EIL+ 
Sbjct: 376 -FGVRITEILSP 386


>gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
 gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
          Length = 419

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 11/131 (8%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                   P+Q      P  N     Q    +N   P+ S+         +N  L+M++P
Sbjct: 291 PNPAMYGQPVQPVMQPQPAVNYRNA-QLAQFENFEAPLGSE-------QKENLQLLMDVP 342

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           +++ + +GS   +I +++  S+G +I L+++ G  VD+ +N   IA+G++ ++++   +F
Sbjct: 343 LQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDD---NF 399

Query: 137 GVRVIEILNAQ 147
            VR+ EI+ ++
Sbjct: 400 AVRITEIVKSK 410


>gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC
           35405]
 gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola]
 gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC
           35405]
          Length = 393

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 15  LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           + G  M   +P Q  N+ +  N   M                    + ++   N  LIM+
Sbjct: 258 MFGSGMPQGSPQQGGNMQAMNNMGMMPQMGMGASVQPVQFPPLQGFVSQEEQGNIGLIMD 317

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + ++M + LG     I  ++ + +G +I LDK  GE VD+ +N++ IAKGE+ ++EE   
Sbjct: 318 VYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES-- 375

Query: 135 HFGVRVIEILNA 146
            FGVR+ EIL+ 
Sbjct: 376 -FGVRITEILSP 386


>gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 377

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNF 69
              +E       +  Q T  S  +   +   +   V N+S P+  +S +  E+    +N 
Sbjct: 241 TKTIEKTVKSEQSKKQQTGASLQSFQPKKEEKSERVYNVS-PVQFESFDEEEERRYPENI 299

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           +LI+++P+++ + LG     +  ++  S G +I LDK  GE VDI +N + IAKGE+ ++
Sbjct: 300 ELILDVPLEITVELGRTQKLVREILEFSTGSIIELDKLAGEPVDILVNGKVIAKGEVVVI 359

Query: 130 EEDDTHFGVRVIEILNA 146
           +E    FGVR+ +I+N 
Sbjct: 360 DES---FGVRITDIVNP 373


>gi|319406966|emb|CBI80603.1| Flagellar motor switch protein fliY [Bartonella sp. 1-1C]
          Length = 170

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 79/123 (64%), Gaps = 4/123 (3%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
            P   TN S+P+  +E   +      I    +S++      ++ N +LIM+IPV++Q++L
Sbjct: 52  TPNLRTNPSTPSFGAEAAGKTT----IGGTGASNAPKNPSDTSSNTELIMSIPVEVQVVL 107

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           GS  M ++ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FGV + EI
Sbjct: 108 GSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGVSLTEI 167

Query: 144 LNA 146
           ++ 
Sbjct: 168 IDK 170


>gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 2360]
 gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 2360]
 gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 1313]
          Length = 406

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + D  + +     N  LIM++P+++ + LG     I +++    G +I LDK  GE VDI
Sbjct: 314 AFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDI 373

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N + IA GE+ +++E    FGVR+ +IL+ 
Sbjct: 374 LVNGKVIAIGEVVVIDES---FGVRITDILHP 402


>gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 378

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DN 68
           +K+ +  ++       Q      P        ++        P+  +S +  E+    +N
Sbjct: 240 VKEEVLRQTSSQTTKSQKKASQPPYTPPPQRKEQPQQVYNVSPVQFESFDEEEERRYPEN 299

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            +LI+++P+++ + LG     +  ++  S G +I L+K  GE VDI +N + IAKGE+ +
Sbjct: 300 IELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVV 359

Query: 129 MEEDDTHFGVRVIEILNA 146
           ++E   +FGVR+ +I+N 
Sbjct: 360 IDE---NFGVRITDIVNP 374


>gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 127

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
              + +D  +LI++IPVKM + LG   M I  L+ LS+G V++LD   GE +DI IN   
Sbjct: 36  AAPQFSDEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYL 95

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146
           IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 96  IAQGEVVVVSD---KFGIRITDIITP 118


>gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
 gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
 gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 97

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
                    ST   D+++++P+++ + LG   M I +L+ L+ G VI LDK  GE +DI 
Sbjct: 2   EAQTPRNGDSTRRLDMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +N + +A+GE  ++ +    FGVR+ +I++ Q
Sbjct: 62  VNGRLVARGEAVVVND---KFGVRITDIVSPQ 90


>gi|77165629|ref|YP_344154.1| surface presentation of antigens (SPOA) protein [Nitrosococcus
           oceani ATCC 19707]
 gi|254434523|ref|ZP_05048031.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
 gi|76883943|gb|ABA58624.1| Surface presentation of antigens (SPOA) protein [Nitrosococcus
           oceani ATCC 19707]
 gi|207090856|gb|EDZ68127.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
          Length = 143

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 6/124 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D P Q       +   E          + E + +D  N+ +    N +LI++IPV M + 
Sbjct: 18  DAPSQPQAGVD-SGQEEESTSMFHPQAVLEELEADPGNVTKDI--NLELILDIPVTMAME 74

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ +
Sbjct: 75  IGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVVNE---KFGIRLTD 131

Query: 143 ILNA 146
           +++A
Sbjct: 132 VISA 135


>gi|332531131|ref|ZP_08407045.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
 gi|332039416|gb|EGI75828.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
          Length = 122

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNI-LEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
            + +E L ++   D   EP    S +   +    + +++++IPV++ + LG   + I ++
Sbjct: 2   ADWAEALQEQKPDDGAVEPGGVLSESARGDAPAADINMVLDIPVQLSVELGRTKVPIKHI 61

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + L +G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +++  
Sbjct: 62  LQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVTP 111


>gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum JW20]
 gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum JW20]
          Length = 398

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + D  + +     N  LIM++P+++ + LG     I +++    G +I LDK  GE VDI
Sbjct: 306 AFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDI 365

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N + IA GE+ +++E    FGVR+ +IL+ 
Sbjct: 366 LVNGKVIAIGEVVVIDES---FGVRITDILHP 394


>gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC
           27405]
 gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC
           27405]
          Length = 406

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + D  + +     N  LIM++P+++ + LG     I +++    G +I LDK  GE VDI
Sbjct: 314 AFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDI 373

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N + IA GE+ +++E    FGVR+ +IL+ 
Sbjct: 374 LVNGKVIAIGEVVVIDES---FGVRITDILHP 402


>gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 366

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 10/136 (7%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD------NF 69
           E       +P+    VS     +   +   +V    E   ++   + ++  D      NF
Sbjct: 226 EQGPKETGSPV-SAKVSQVAREASGRVVGEEVSGAVEVRPAEFVPLDKQIADQDMDGHNF 284

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           DLI+++PV++ + LG     I  ++NL+ G VI LDK  G+ VDI +N + IA+GE+ ++
Sbjct: 285 DLIVDVPVRITVRLGQAAKTIGEILNLTPGSVIELDKMAGDPVDILVNGKLIARGEVVVI 344

Query: 130 EEDDTHFGVRVIEILN 145
           +E   +FGVR+ EI+N
Sbjct: 345 DE---NFGVRITEIVN 357


>gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 400

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 3/105 (2%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           ++K+++       +  +  +      N  LIM++P+ + + LG     I  +++L  G +
Sbjct: 291 VKKSEIAVQPVQFAPLTPEVRYVEPQNISLIMDVPLNVSVELGRTRKTIKEILDLGPGSI 350

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + L+K  GE VDI +N + IAKGE+ +++E   ++GVRV  I++ 
Sbjct: 351 VQLEKLAGEPVDILVNGKLIAKGEVVVIDE---NYGVRVTAIISP 392


>gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 390

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
           N++     +  +     +   S   +    N+      N +LI++IP+K+ ++LG     
Sbjct: 268 NMAETPAPTAPMPTSPGIAGFSGEETFRPQNLGSLEQRNLELILDIPLKVSVVLGRTKRP 327

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I +++ ++ G V+ LD    E V+I +N   +A GE+ ++ E   +FGVR+  I++ 
Sbjct: 328 IKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVVVVNE---NFGVRITNIISP 381


>gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 134

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           K D D +S    S + +     + N D ++++P+++ + LG   M I+ ++ L++G VI 
Sbjct: 27  KPDFDELSADAGSPAPSTASTGSQNLDFLLDVPLEVSVELGRTSMIINKMLQLTQGSVIE 86

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           LDK  GE V+I +N + + KGE+ ++ E    FG+RV EI++
Sbjct: 87  LDKAAGEPVEIFVNQKLMGKGEVVVVNE---RFGIRVTEIIS 125


>gi|46578463|ref|YP_009271.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603953|ref|YP_968353.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
 gi|46447874|gb|AAS94530.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564182|gb|ABM29926.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
 gi|311232391|gb|ADP85245.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris RCH1]
          Length = 170

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
             +          +  + +       +          +      D I++IP+ +   LG 
Sbjct: 45  ATEEQGQLRKEKEQAFLSQAQEAKFKDLTEESRAPRPDSGKRELDFILDIPLDVSAELGR 104

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I+ L+ L +G V+ L+K  GE +++ +N + +A+GE  ++ E    FGVR+ +I++
Sbjct: 105 TRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVARGEAVVINE---KFGVRLTDIIS 161

Query: 146 A 146
            
Sbjct: 162 P 162


>gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 226

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
           +  T   E    +    +  EP +    N+ ++   N D+IM+IPV + + +G   + I 
Sbjct: 108 ARETQRQENWQAERAELDELEPDAGAGRNLGDEEA-NLDVIMDIPVTLSMEIGRTQISIR 166

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +L+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++A
Sbjct: 167 HLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNE---RFGIRLTDVISA 218


>gi|220903654|ref|YP_002478966.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867953|gb|ACL48288.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 190

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K     D I++IP+ +   LG   + I+ L+ L +G V+ L+K  GE +++ +N + +A+
Sbjct: 103 KLKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVAR 162

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE  ++ E    FGVR+ +I++ 
Sbjct: 163 GEAVVINE---KFGVRLTDIISP 182


>gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
 gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
          Length = 385

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 4/129 (3%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
               + P  +      T  +E      DV + S     +  +  +  + N D++++IP++
Sbjct: 254 EKQTEPPAAEYIQHEETQQAEPGHVSVDVQSASF-AEFEHVSSPQGDSRNLDMLLDIPLQ 312

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG     +  ++ LS G +I LDK  GE VDI IN++ IAKGE+ +++E   +FGV
Sbjct: 313 VTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKLIAKGEVVVIDE---NFGV 369

Query: 139 RVIEILNAQ 147
           RV +I++ +
Sbjct: 370 RVTDIISQR 378


>gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51]
 gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 421

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
            +      P    N          +           P+        ++   N +LI+++P
Sbjct: 287 QQQQGYGGPAYGHNQGGYYTPGYGVPPTPVQPAQFVPLKPGDPLHGQE---NLELILDVP 343

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           +++ + LG     I  ++ L  G VI LD+  GE VD+ +N + +AK E+ ++ E    F
Sbjct: 344 LQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLVAKCEVVVINET---F 400

Query: 137 GVRVIEILNA 146
           G+R+ +I+  
Sbjct: 401 GIRITDIVQP 410


>gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 370

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 3/105 (2%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
             +K DV  +      D +       +N +LIM+IP+ + + LG     I +++ L++G 
Sbjct: 261 KAEKVDVKPVIFREFDDEDEPTTAEKENINLIMDIPLNVTVELGRTKKLIKDILELNEGS 320

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +I LDK  GE VDI +N + IAKGE+ +++E   +FGVR+++I+ 
Sbjct: 321 IIELDKLAGEPVDILVNGKFIAKGEVVVIDE---NFGVRILDIVK 362


>gi|187926921|ref|YP_001893266.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
 gi|241665250|ref|YP_002983609.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
 gi|187728675|gb|ACD29839.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
 gi|240867277|gb|ACS64937.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
          Length = 150

 Score =  119 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 5/128 (3%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
            M ++  +          N        +   + +P+++D   +     ++ D+I++IPV+
Sbjct: 19  EMTMEEAMALEAAQRAAANPPAATPAAESSPVFKPLTAD--GLGGAQRNDIDMILDIPVQ 76

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           + + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ E    FG+
Sbjct: 77  LTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVNE---KFGI 133

Query: 139 RVIEILNA 146
           R+ +I+  
Sbjct: 134 RLTDIITP 141


>gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           32953]
 gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           32953]
 gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
          Length = 138

 Score =  119 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----DNFDLIMNIPVKMQ 80
           P  D   S     ++   ++   +  +        ++          + DLI++IPVK+ 
Sbjct: 7   PSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLS 66

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ ++ +    +GVR+
Sbjct: 67  VELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRI 123

Query: 141 IEILNA 146
            +I+  
Sbjct: 124 TDIITP 129


>gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 154

 Score =  119 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 23/145 (15%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD-------------- 67
           I+ P  +         ++ L ++    + ++ + +D+ +  + +                
Sbjct: 4   INKPSDENAGEMDDLWADALKEQKSTGDSADDLWADALSEQKTAGKSSADSVFRALEGGD 63

Query: 68  ------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
                 + +LIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   I
Sbjct: 64  MVGALQDINLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 123

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
           A+GE+ ++ +    +GVR+ +I+  
Sbjct: 124 AQGEVVVVAD---KYGVRITDIITP 145


>gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae]
          Length = 139

 Score =  119 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           ++        DN  E   +     +E    + ++IM+IPVK+ + LG   M I  L+NL+
Sbjct: 25  AQQSKPPKPTDNGPEIFDNLEMQDIENQFSDINMIMDIPVKLTVELGRTKMTIKKLLNLT 84

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +G V++LD   GE +DI IN   IA+GE+ ++ +    +G+R+ +I+  
Sbjct: 85  QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGIRITDIITP 130


>gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
           c2]
 gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
           c2]
          Length = 139

 Score =  119 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 15  LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLI 72
           +   +   D+ + D   +          Q      +   +   S   +   ++  N +++
Sbjct: 1   MAENTEQTDDSMDDWAAAMAEQAEVESGQTKSGGTVPPLDQFESAGKSNGTENPINLEVL 60

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           M++PV + + +G   + I +L+ L++G ++ LD+  GE +D+ +N   IA+GE+ ++ E 
Sbjct: 61  MDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRLAGEPLDVLVNGTLIARGEVVVINE- 119

Query: 133 DTHFGVRVIEILNA 146
              FG+R+ ++++ 
Sbjct: 120 --KFGIRLTDVISP 131


>gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
 gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
          Length = 137

 Score =  119 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVKMQI 81
           P  +   S     ++   ++   +  S       S        S  + DLI++IPVK+ +
Sbjct: 7   PSGEGKESVDDLWADAFNEQQATEKTSATDAVFKSLEAQDAVGSLQDIDLILDIPVKLTV 66

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    FGVR+ 
Sbjct: 67  ELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRIT 123

Query: 142 EILNA 146
           +I+  
Sbjct: 124 DIITP 128


>gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 417

 Score =  119 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N +LI+++P+++ + LG     I  ++ L  G VI LD+  GE VD+ +N + IAK 
Sbjct: 328 GQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLIAKC 387

Query: 125 EITIMEEDDTHFGVRVIEILNA 146
           E+ ++ E    FG+R+ +I+  
Sbjct: 388 EVVVINET---FGIRITDIVQP 406


>gi|255021380|ref|ZP_05293428.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
 gi|254969243|gb|EET26757.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
          Length = 150

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 65/113 (57%), Gaps = 14/113 (12%)

Query: 45  NDVDNISEPISSDSNNILEKST-----------DNFDLIMNIPVKMQIILGSCCMQISNL 93
            D    +EP+++     LE+++            N D+I++IPV + + LG   +QI NL
Sbjct: 33  KDTPPSAEPVAAAPMPDLEETSPAGGAPAGGAHANLDMILDIPVNLSVELGRTKIQIRNL 92

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + L++G V+ L++  GE +D+ +N   IA+GE+ ++ +    FG+R+ +I++ 
Sbjct: 93  LQLAQGSVVELERLAGEPMDVLVNGYLIAQGEVVLVND---KFGIRLTDIISP 142


>gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus nematophila ATCC 19061]
          Length = 135

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 15  LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           +       D  L D   +            +   +I E +       +     + DLIM+
Sbjct: 1   MSDAKQPTDTSLTDDMWAEALEQQAAQQTSDGGASIFENLEPQD---VLSQLSDIDLIMD 57

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ ++ +   
Sbjct: 58  IPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD--- 114

Query: 135 HFGVRVIEILNA 146
            +G+R+ +I+  
Sbjct: 115 KYGIRITDIITP 126


>gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica
           W22703]
          Length = 138

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----DNFDLIMNIPVKMQ 80
           P  D   S     ++   ++   D  +        ++          + DLI++IPVK+ 
Sbjct: 7   PSDDGKESVDDLWADAFNEQLASDKPAATTDGVFKSLEAPDALGNLQDIDLILDIPVKLT 66

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ ++ +    +GVR+
Sbjct: 67  VELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRI 123

Query: 141 IEILNA 146
            +I+  
Sbjct: 124 TDIITP 129


>gi|296135699|ref|YP_003642941.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
 gi|295795821|gb|ADG30611.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
          Length = 144

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 4/97 (4%)

Query: 51  SEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
             P +    +    + +N  DL+M+IPV + + LG   +QI  L+ L++G V+ LD+  G
Sbjct: 43  PAPFAELRADQGGAAPNNQLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAG 102

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           E +D+ +N   IA+GE+ ++ +    FG+R+ +I++ 
Sbjct: 103 EPMDVLVNGFLIARGEVVLVND---KFGIRLTDIVSP 136


>gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
           35185]
 gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
           35185]
          Length = 398

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           S   ++ +  N  LI+++P+++ + LG     I +++ L+ G ++ LDK  GE VDI +N
Sbjct: 305 STAPVQVNDANIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVN 364

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + +AKGE+ +++E   +FGVR+ +I++ 
Sbjct: 365 GKFLAKGEVVVIDE---NFGVRITDIVSP 390


>gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032]
 gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032]
          Length = 154

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 5/122 (4%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILG 84
           + T  S+    ++ L ++      S      +    +   +  + +LIM+IPVK+ + LG
Sbjct: 27  KGTGDSAEDLWADALSEQKTAGKSSADSVFRALEGGDMIGALQDINLIMDIPVKLTVELG 86

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I+
Sbjct: 87  RTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDII 143

Query: 145 NA 146
             
Sbjct: 144 TP 145


>gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
 gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
 gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1]
          Length = 404

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           +    P  +  N + +   +N DLIM++P+++ + LG     IS +++   G +I L+K 
Sbjct: 303 NAQFTPFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKL 360

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            GE +DI +N + +AKGE+ ++EE    FGVR+ EI+N++
Sbjct: 361 AGEPIDILVNGKYVAKGEVVVIEES---FGVRITEIVNSK 397


>gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
 gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
          Length = 147

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
            + +    Q      +SE     +    + +  + D+I++IPV + + +G   + I NL+
Sbjct: 31  EDEAAANNQGAAPMELSEFDEPAAAPASQGNNPDLDVILDIPVSISMEVGRTSITIRNLL 90

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 91  QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRMTDVISP 139


>gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Selenomonas sputigena ATCC 35185]
 gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Selenomonas sputigena ATCC 35185]
          Length = 394

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           S   ++ +  N  LI+++P+++ + LG     I +++ L+ G ++ LDK  GE VDI +N
Sbjct: 301 STAPVQVNDANIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVN 360

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + +AKGE+ +++E   +FGVR+ +I++ 
Sbjct: 361 GKFLAKGEVVVIDE---NFGVRITDIVSP 386


>gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629]
          Length = 404

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           +    P  +  N + +   +N DLIM++P+++ + LG     IS +++   G +I L+K 
Sbjct: 303 NAQFTPFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKL 360

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            GE +DI +N + +AKGE+ ++EE    FGVR+ EI+N++
Sbjct: 361 AGEPIDILVNGKYVAKGEVVVIEES---FGVRITEIVNSK 397


>gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
 gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
          Length = 138

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 7/126 (5%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----DNFDLIMNIPVKMQ 80
           P  D   S     ++   ++   +  +        ++          + DLI++IPVK+ 
Sbjct: 7   PSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLS 66

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+ ++ +    +GVR+
Sbjct: 67  VELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRI 123

Query: 141 IEILNA 146
            +I+ +
Sbjct: 124 TDIITS 129


>gi|294339870|emb|CAZ88233.1| Flagellar motor switch protein fliN [Thiomonas sp. 3As]
          Length = 144

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 4/97 (4%)

Query: 51  SEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
             P +    +    + +N  DL+M+IPV + + LG   +QI  L+ L++G V+ LD+  G
Sbjct: 43  PAPFAELRADQGGGAPNNQLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAG 102

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           E +D+ +N   IA+GE+ ++ +    FG+R+ +I++ 
Sbjct: 103 EPMDVLVNGFLIARGEVVLVND---KFGIRLTDIVSP 136


>gi|295678045|ref|YP_003606569.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
 gi|295437888|gb|ADG17058.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
          Length = 154

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK-----ST 66
           + +LE         L      +  ++    + + + +    P ++     L K     + 
Sbjct: 9   ESDLEAAEQLAAGALSAAEDDAAMDDWASALAEQNGNAEVNPAAAGVFQPLSKVEPTATH 68

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++ D+I++IPV+M + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+
Sbjct: 69  NDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEV 128

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ +    FG+R+ +I+  
Sbjct: 129 VVVND---KFGIRLTDIITP 145


>gi|116694516|ref|YP_728727.1| flagellar motor switch protein/type III secretory pathway protein
           [Ralstonia eutropha H16]
 gi|113529015|emb|CAJ95362.1| flagellar motor switch protein/type III secretory pathway protein
           [Ralstonia eutropha H16]
          Length = 149

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 60/97 (61%), Gaps = 6/97 (6%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +P++ ++ +      ++ ++I++IPV++ + LG   + I NL+ L++G V+ LD   G
Sbjct: 50  VFQPLAKEAPS---GFRNDIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAG 106

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           E +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 107 EPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 140


>gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
 gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY]
 gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
 gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY]
          Length = 149

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNN--SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
                  D+P      +           I       +S   +       E    + ++++
Sbjct: 10  NSGGSAADDPFAGWAEALEEQKRVDGQTIDAEQGGPLSGEPARPYAAGGEPQVHDINMVL 69

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +  
Sbjct: 70  DIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND-- 127

Query: 134 THFGVRVIEILNA 146
             FG+R+ +++  
Sbjct: 128 -KFGIRLTDVVTP 139


>gi|302338091|ref|YP_003803297.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
           11293]
 gi|301635276|gb|ADK80703.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
           11293]
          Length = 375

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 5/111 (4%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
              + +  + +V  +  P  +    ++     N  L+M++ ++M + LG     I +++ 
Sbjct: 262 GGGQGMYNQANVQPVQFPPLN--PQMVSGEQGNIGLLMDVYMEMTVELGRTKRLIKDILG 319

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + +G +I LDK  GE VDI +N++ IAKGE+ +++E   +FGVRV EI++ 
Sbjct: 320 MGEGTIIELDKLAGEPVDILVNHKLIAKGEVVVIDE---NFGVRVTEIVSP 367


>gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
 gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus bovienii SS-2004]
          Length = 135

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCMQ 89
           +    +E L Q+          S   N   + +     + DLIM+IPVK+ + LG   M 
Sbjct: 13  TEDMWAEALEQQAAQQTSDSGASIFENLEPQDALAQLSDIDLIMDIPVKLSVELGRTKMT 72

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I  L+ LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    +G+R+ +I+  
Sbjct: 73  IKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGIRITDIITP 126


>gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 124

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            + DLI++IPVK+ + LG   M I  L+ LS+G V++LD   GE +DI IN   IA+GE+
Sbjct: 39  QDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEV 98

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ +    +GVR+ +I+  
Sbjct: 99  VVVAD---KYGVRITDIITP 115


>gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
 gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
          Length = 124

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +E    +           S        +  + DLI++IPVK+ + LG   M I  L+ LS
Sbjct: 10  NEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLRLS 69

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +G V++LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I+ +
Sbjct: 70  QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITS 115


>gi|332524238|ref|ZP_08400464.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
 gi|332107573|gb|EGJ08797.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
          Length = 144

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 4/114 (3%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
            P   SE+      V   +   +  ++     S ++ ++I++IPV++ + LG   + I +
Sbjct: 25  EPEVASEVRAPAETVAP-AAFTNFGASVPASGSGNDINMILDIPVQLTVELGRTRIPIKH 83

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 84  ILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIVTP 134


>gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514]
 gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X561]
 gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Thermoanaerobacter sp. X513]
 gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514]
 gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X561]
 gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X513]
          Length = 375

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 68/116 (58%), Gaps = 3/116 (2%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           +N+S+    ++   + N    + +    +  +  ++  +N +LI+++P+ + + LG    
Sbjct: 253 SNISTRDKVTKKKQKVNVSPVVFQSFDEEPTSKSKEDKENLELILDVPLTITVELGKTKK 312

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            I +++ LS+G +I LDK  GE VDI  N + IAKGE+ +++E   +FGVR+ +I+
Sbjct: 313 LIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDE---NFGVRITDIV 365


>gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10]
 gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
 gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
 gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1]
 gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
 gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
 gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10]
 gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
 gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
 gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
 gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
 gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004]
 gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038]
 gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 138

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +E    +           S        +  + DLI++IPVK+ + LG   M I  L+ LS
Sbjct: 24  NEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLRLS 83

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +G V++LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I+ +
Sbjct: 84  QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITS 129


>gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
 gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
          Length = 377

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
               + G +M +  P Q   +        M++   + +  S       N  +     N  
Sbjct: 242 GNPQMPGMNMQMGIPQQMNGMQQ----GGMIMPGINPNVQSVQFQPLQNVPVGTEQGNIG 297

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LIM++ +++ + LG   M I +++ + +G +I LDK  GE VDI +N++ IAKGE+ +++
Sbjct: 298 LIMDVYMEVTVELGRTRMIIKDILGMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVID 357

Query: 131 EDDTHFGVRVIEILNA 146
           E   +FGVRV EIL+ 
Sbjct: 358 E---NFGVRVTEILSP 370


>gi|218887303|ref|YP_002436624.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758257|gb|ACL09156.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 180

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 6/108 (5%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
               ++    +++E   S      +      D I++IP+ +   LG   + I+ L+ L +
Sbjct: 71  ASAAREAKFKDLTEEAKSPRP---DSGRRELDFILDIPLDVSAELGRTRLLINELLQLGQ 127

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           G V+ L+K  GE +++ +N + +A+GE  ++ E    FGVR+ +I++ 
Sbjct: 128 GSVVELNKLAGEPLEVYVNGKLVARGEAVVINE---KFGVRLTDIISP 172


>gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 137

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +E    +           S   +    +  + DLI++IPVK+ + LG   M I  L+ L+
Sbjct: 23  NEQQAAEKPAATTEGIFKSLEGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLT 82

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +G V+ LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I+  
Sbjct: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD---KYGVRITDIITP 128


>gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum
           SCRI1043]
          Length = 137

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            + DLI++IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+
Sbjct: 52  QDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ +    +GVR+ +I+  
Sbjct: 112 VVVSD---KYGVRITDIITP 128


>gi|292489154|ref|YP_003532041.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|292900272|ref|YP_003539641.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291200120|emb|CBJ47246.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291554588|emb|CBA22222.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
          Length = 124

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 37  NSEMLIQKNDVDNISEPISSDSNNILEKS--TDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           +S   +     + +SE  S      +  +  +D  +LI++IPVKM + LG   M I  L+
Sbjct: 7   SSGSAVNDLGAEAMSEQTSEGMTQAMSATHISDELNLILDIPVKMTVELGRTKMTIKELL 66

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            LS+G V+ LD   GE +DI IN   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 67  RLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIITP 115


>gi|94987083|ref|YP_595016.1| flagellar motor switch/type III secretory pathway protein [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731332|emb|CAJ54695.1| Flagellar motor switch/type III secretory pathway protein [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 164

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
                 E S    D I++IP+ +   LG   + I+ L+ L +G V+ L+K  GE +++ +
Sbjct: 70  ARTPRPEGSRRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFV 129

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N + +A+GE  ++ E    FGVR+ +I++ 
Sbjct: 130 NGKLVARGEAVVINE---KFGVRLTDIISP 156


>gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
 gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
          Length = 124

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +E    +           S        +  + DLI++IPVK+ + LG   M I  L+ LS
Sbjct: 10  NEQQATEKPAATTEGVFKSLEAPDALGNLQDIDLILDIPVKLTVELGRTKMTIKELLRLS 69

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +G V++LD   GE +DI IN   IA+GE+ ++ +    +GVR+ +I+  
Sbjct: 70  QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITP 115


>gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
 gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
          Length = 136

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 10/124 (8%)

Query: 28  DTNVSSPTNNSEMLIQK-----NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D + S+    ++ + Q+     ++  ++ E +  + + +      + +LIM+IPVK+ + 
Sbjct: 9   DNSQSAEDMWADAMEQQTGKSQDNSSDLFEHLLPEDDTL--NHLSDINLIMDIPVKLTVE 66

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   M I  L++LS+G V++LD   GE +DI IN   IA+GE+ ++ +    +G+R+ +
Sbjct: 67  LGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGIRITD 123

Query: 143 ILNA 146
           I+  
Sbjct: 124 IITP 127


>gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
           12168]
 gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
           12168]
          Length = 396

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 5/109 (4%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           + M +   +V ++  P      ++ E+   N  LIM++ ++M + LG    QI  ++ + 
Sbjct: 287 ASMGMNAPNVQSLQFPGLQSGMSVTEQG--NIGLIMDVYMEMTVELGRTKKQIKEILGMG 344

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +G +I LDK  GE VDI +N++ IAKGE+ +++E   +FGVRV EIL+ 
Sbjct: 345 EGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDE---NFGVRVTEILSP 390


>gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 398

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 17  GRSMHIDNPLQDTNVSSP-TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
                I  P Q+         +   +  +          +    + +  S  N DLIM++
Sbjct: 263 QAETAISPPPQEPIYGQAFVQSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLIMDV 322

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+ + + LG     I  ++ L++G +I LDK  GE VD+ +N + IAKGE+ +++E   +
Sbjct: 323 PLDVSVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDE---N 379

Query: 136 FGVRVIEILNA 146
           +G+R+  I++ 
Sbjct: 380 YGIRITTIISP 390


>gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 139

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           D+ +    S           + DLI++IPVK+ + LG   M I  L+ LS+G V++LD  
Sbjct: 35  DSSAAIFESLEPQDALAHLSDIDLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGL 94

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            GE +DI IN   IA+GE+ ++ +    +G+R+ +I+  
Sbjct: 95  AGEPLDILINGYLIAQGEVVVVSD---KYGIRITDIITP 130


>gi|309779461|ref|ZP_07674222.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
 gi|308921702|gb|EFP67338.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
          Length = 151

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +   + +P+++D   +     ++ D+I++IPV++ + LG   + I NL+ L++G V+ LD
Sbjct: 47  ESSPVFKPLTAD--GLGGAQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELD 104

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              GE +D+ +N   IA+GE+ ++ E    FG+R+ +I+  
Sbjct: 105 ALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 142


>gi|94314218|ref|YP_587427.1| flagellar motor switch FliN [Cupriavidus metallidurans CH34]
 gi|93358070|gb|ABF12158.1| Flagellar motor switch FliN [Cupriavidus metallidurans CH34]
          Length = 156

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            +  P++ ++        ++  +I++IPV++ + LG   + I NL+ L++G V+ LD   
Sbjct: 56  TVFPPLAQEAPP---GFHNDIGMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLA 112

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 113 GEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 147


>gi|259907614|ref|YP_002647970.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
 gi|224963236|emb|CAX54720.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
 gi|283477456|emb|CAY73372.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
 gi|310764880|gb|ADP09830.1| Flagellar motor switch protein FliN [Erwinia sp. Ejp617]
          Length = 124

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +LI++IPVKM + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE
Sbjct: 38  SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 97

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           + ++ +    FG+R+ +I+  
Sbjct: 98  VVVVSD---KFGIRITDIITP 115


>gi|319403949|emb|CBI77537.1| Flagellar motor switch protein fliY [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 170

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 4/123 (3%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
            P   TN  +P+   E   +      I    +S++      ++ N +LIM+IPV++Q++L
Sbjct: 52  TPNLRTNPGTPSFGGEAAGKTT----IGGTGASNAPKSPGDTSSNTELIMSIPVEVQVVL 107

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           GS  M ++ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FGV + EI
Sbjct: 108 GSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGVSLTEI 167

Query: 144 LNA 146
           ++ 
Sbjct: 168 IDK 170


>gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
 gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
          Length = 343

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 59/96 (61%), Gaps = 3/96 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +     + +   + +D  +L++++P+K+ + LG   M +  ++ ++ G +I LDK  GE 
Sbjct: 239 DQSQRAAVSTPSEFSDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLIELDKLTGEP 298

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           VDI +N + IAKGE+ +++E   +FGVR+ EI+  +
Sbjct: 299 VDILVNGRLIAKGEVVVVDE---NFGVRITEIVTPK 331


>gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName:
           Full=Flagellar motor switch protein MopA
          Length = 106

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            + DLI++IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+
Sbjct: 21  QDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 80

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ +    +GVR+ +I+  
Sbjct: 81  VVVSD---KYGVRITDIITP 97


>gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
           2489]
 gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
           2489]
          Length = 408

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           + ++      N +LIM++ ++M + LG     I +++ L +G +I LDK  GE VDI +N
Sbjct: 315 TQSVGGGEQGNINLIMDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVN 374

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++ IAKGE+ +++E   +FGVRV EIL A
Sbjct: 375 HKPIAKGEVVVIDE---NFGVRVTEILPA 400


>gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulovorans 743B]
 gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B]
 gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulovorans 743B]
          Length = 400

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 12/145 (8%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI--SEPISSDSNNI-------L 62
             N   + M+ +N   + +      N+     +  V N+  S+P+               
Sbjct: 251 TSNYNSQPMNYNNQQTNYDSQPVNYNAAPQAYQQPVHNVYESKPVEVSKATFQPLRTADT 310

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +   +N DLIM++P+ + ++LG     I ++++L+ G +I LDK   E V+I +N +KIA
Sbjct: 311 KSLPNNIDLIMDVPLNISVVLGKTRKSIKDILSLNNGSLIELDKLAEEPVEILVNGKKIA 370

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
            GE+ +++E   +FGVR+  I++++
Sbjct: 371 YGEVVVVDE---NFGVRITSIVSSE 392


>gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 372

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 72/133 (54%), Gaps = 5/133 (3%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
           D +   +  I N   +        +     + +    + + + +D   + EK  +N +LI
Sbjct: 237 DIINTGTAGIKNDFNEEIRHEEQISQPKSRKVDVKPVVFKELDADEQTVSEK--ENINLI 294

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           M+IP+ + + LG     I +++ L++G +I LDK  GE VDI +N + IAKGE+ +++E 
Sbjct: 295 MDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLAGEPVDILVNGKFIAKGEVVVIDE- 353

Query: 133 DTHFGVRVIEILN 145
             +FGVR+++I+ 
Sbjct: 354 --NFGVRILDIVK 364


>gi|54308124|ref|YP_129144.1| flagellar motor switch protein [Photobacterium profundum SS9]
 gi|46912550|emb|CAG19342.1| putative polar flagellar switch protein FliN [Photobacterium
           profundum SS9]
          Length = 129

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISS---DSNNILEKSTDNFDLIMNIPVKMQII 82
           +   +     + +  L ++        P+     +S  I +      D IM+IPV + + 
Sbjct: 1   MSQNDQQMADDWAAALAEQTVDGAQPAPLEELVDESTPISDDERRKLDTIMDIPVTISME 60

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ +
Sbjct: 61  VGRTQISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTD 117

Query: 143 ILN 145
           +++
Sbjct: 118 VIS 120


>gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2]
          Length = 151

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T  +E    +  ++      S  +  I      N D+I++IPV + + +G   + I NL+
Sbjct: 37  TPVAEPSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 94

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 95  QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 143


>gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320]
 gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
 gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320]
 gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
          Length = 136

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 73/132 (55%), Gaps = 10/132 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQK-----NDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           M  +N   D + S+    ++ + Q+     ++  ++ E +  + + +      + +LIM+
Sbjct: 1   MSDENRPTDNSQSAEDMWADAMEQQTGKSQDNSSDVFEHLLPEDDTL--NHLSDINLIMD 58

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPVK+ + LG   M I  L++LS+G V++LD   GE +DI IN   IA+GE+ ++ +   
Sbjct: 59  IPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD--- 115

Query: 135 HFGVRVIEILNA 146
            +G+R+ +I+  
Sbjct: 116 KYGIRITDIITP 127


>gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sp. AT1b]
 gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sp. AT1b]
          Length = 376

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 9/108 (8%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
           E+ + + +   +  P S       E +  N  L+ ++P+ + + LG     +  ++ LS+
Sbjct: 271 EVAVSQAEFMPLQSPASQ------EAAPANLGLLYDVPLNVTVELGRTKKSVREVLELSQ 324

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           G +I LDK  GE VDI +N Q+IA+GE+ ++EE   +FGVRV EI+  
Sbjct: 325 GSIIELDKLAGEPVDIYVNQQRIARGEVVVIEE---NFGVRVTEIIQP 369


>gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
           35580]
 gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
           35580]
          Length = 382

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S   S   N + E    N  LIM++ ++M + LG     I  ++++ +G +I LDK  GE
Sbjct: 283 SVQFSPLLNGVTEAEQGNIGLIMDVFMEMTVELGRTRKMIKEILSMGEGHIIELDKLAGE 342

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            VDI +N++ IAKGE+ +++E   +FGVRV EIL+ 
Sbjct: 343 PVDILVNHKPIAKGEVVVIDE---NFGVRVTEILSP 375


>gi|307731350|ref|YP_003908574.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
 gi|307585885|gb|ADN59283.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
          Length = 155

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
           +    N            + +P+S  +      + ++ D+I++IPV+M + LG   + I 
Sbjct: 38  ALAEQNDNSSEISASTAGVFQPLSKVAPTT---TRNDIDMILDIPVQMTVELGRTKLAIR 94

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 95  NLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 146


>gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
           49176]
 gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
           49176]
          Length = 370

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILG 84
            Q     +P       +    V+       +   NI      +N  LIM++P+++ + LG
Sbjct: 253 AQQPTAPAPQPMPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTVELG 312

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
                I  +++ S G +I L+K  GE++D+ +N + +AKGE+ ++E+   +FG+R+ EI+
Sbjct: 313 RTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIED---NFGIRITEIV 369

Query: 145 N 145
            
Sbjct: 370 K 370


>gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
           4359]
 gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
           4359]
          Length = 344

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            +        E   D  +L++++P+K+ + LG   M +  ++ +  G +I LDK  GE V
Sbjct: 245 ELKPSGTAKTEIPQDKLELLLDVPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPV 304

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           DI +N + IA+GE+ +++E   +FGVRV EI++ +
Sbjct: 305 DILVNGKLIARGEVVVIDE---NFGVRVTEIVSPK 336


>gi|224370776|ref|YP_002604940.1| FliN [Desulfobacterium autotrophicum HRM2]
 gi|223693493|gb|ACN16776.1| FliN [Desulfobacterium autotrophicum HRM2]
          Length = 113

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           M    ++ ++       + ++  +++    D I++IP+ + + LG   M +++L+ L +G
Sbjct: 1   MAENNSEANSSQHGSDDEFDHEGQQTGRELDFILDIPLDLSVELGRARMLVNDLLQLGQG 60

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            ++ L+K  GE +++ IN + IA+GE+ ++ E    FGVR+ +I+  
Sbjct: 61  SIVELNKLAGEPLEVYINRKLIARGEVVVVNE---KFGVRLTDIITP 104


>gi|212634375|ref|YP_002310900.1| flagellar motor switch protein [Shewanella piezotolerans WP3]
 gi|212555859|gb|ACJ28313.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
          Length = 126

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 4/118 (3%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           DT        +E  I++     + E  SSD+  + E+     D IM+IPV + + +G   
Sbjct: 4   DTGDDWAAAMAEQAIEEAQAVELDE-FSSDAAPLSEEEASKLDAIMDIPVTISMEVGRSF 62

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  INIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117


>gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
           degensii KC4]
 gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
           degensii KC4]
          Length = 360

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           SS +   L+      +LI++IP+K+ ++LG     I  ++ L  G ++ LD    E V+I
Sbjct: 259 SSPAPPPLDVDRSRLELILDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEI 318

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +N   +A+GE+ ++EE   +FGVR+  I+  Q
Sbjct: 319 LVNGVLVARGEVVVVEE---NFGVRITSIVTPQ 348


>gi|296157440|ref|ZP_06840275.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
 gi|295892212|gb|EFG71995.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
          Length = 154

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 6/112 (5%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              ++          + +P+S         + ++ D+I++IPV+M + LG   + I NL+
Sbjct: 40  AEQNDNTEVSATTAGVFQPLSKVEPT---STRNDIDMILDIPVQMTVELGRTKIAIRNLL 96

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 97  QLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 145


>gi|91785620|ref|YP_560826.1| flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
 gi|91689574|gb|ABE32774.1| Flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
          Length = 154

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 6/112 (5%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              ++          + +P+S         + ++ D+I++IPV+M + LG   + I NL+
Sbjct: 40  AEQNDNSEVSAATAGVFQPLSKVEPT---STRNDIDMILDIPVQMTVELGRTKIAIRNLL 96

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 97  QLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 145


>gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 148

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 66/137 (48%), Gaps = 4/137 (2%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTN-NSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69
             +N        D+P      +     +S+     +    ++       ++  E   ++ 
Sbjct: 5   GDNNDNDGKSAADDPFAGWAEALEEQKSSDEAPPTDQGGPLAGDPVRPFSSSNEAPVNDI 64

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           +++++IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA+GE+ ++
Sbjct: 65  NMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 124

Query: 130 EEDDTHFGVRVIEILNA 146
            +    FG+R+ +++  
Sbjct: 125 ND---KFGIRLTDVVTP 138


>gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus
           degradans 2-40]
 gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40]
          Length = 135

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGSCC 87
           S     +  + Q+   D  ++ I  D    +  +  N     D+I++IPV + + +G   
Sbjct: 12  SMADEWAAAMEQQETEDGAAQSIDLDEFQPVTGAPTNNNPDLDVILDIPVSISMEVGRTS 71

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 72  ITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRMTDVISP 127


>gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
 gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
          Length = 148

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 65/137 (47%), Gaps = 4/137 (2%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTN-NSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69
              N        D+P      +     +S+     +    ++       ++  E   ++ 
Sbjct: 5   GDSNDNDGKSAADDPFAGWAEALEEQKSSDESQPVDQGGPLAGEPVRPFSSSNEAPVNDI 64

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           +++++IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N   IA+GE+ ++
Sbjct: 65  NMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 124

Query: 130 EEDDTHFGVRVIEILNA 146
            +    FG+R+ +++  
Sbjct: 125 ND---KFGIRLTDVVTP 138


>gi|73539703|ref|YP_300070.1| Type III secretion system outer membrane O protein [Ralstonia
           eutropha JMP134]
 gi|72123040|gb|AAZ65226.1| Type III secretion system outer membrane O protein [Ralstonia
           eutropha JMP134]
          Length = 142

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQ 80
           +P+ D   +     S    +      I    +       E  +   ++ ++I++IPV++ 
Sbjct: 11  DPMDDWASALAEQTSATAAEAPVAAAIPAAATVFPPLAKEAPSGFQNDIEMILDIPVQLT 70

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+
Sbjct: 71  VELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVND---KFGIRL 127

Query: 141 IEILNA 146
            +I+  
Sbjct: 128 TDIITP 133


>gi|149908449|ref|ZP_01897112.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
 gi|149808612|gb|EDM68547.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
          Length = 127

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           + +       + +  + +++ V+    E  S+D N    +     D I++IPV + + +G
Sbjct: 1   MSEDQDQMANDWAAAMAEQSTVEAAELEDFSNDDNAFSPEQQHKLDSILDIPVVISMEVG 60

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 61  RSKISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 117

Query: 145 N 145
           +
Sbjct: 118 S 118


>gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
           WPP163]
 gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
           WPP163]
          Length = 137

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            + DLI++IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+
Sbjct: 52  QDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ +    +GVR+ +I+  
Sbjct: 112 VVVSD---KYGVRITDIMTP 128


>gi|312173312|emb|CBX81567.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
           BAA-2158]
          Length = 93

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +LI++IPVKM + LG   M I  L+ LS+G V+ LD   GE +DI IN   IA+GE
Sbjct: 7   SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 66

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           + ++ +    FG+R+ +I+  
Sbjct: 67  VVVVSD---KFGIRITDIITP 84


>gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 381

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 76/136 (55%), Gaps = 3/136 (2%)

Query: 9   SYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN 68
           S I ++ E      +N L+D N+      ++   + N    + +    + +   ++  +N
Sbjct: 239 SAIIESDEKSVETDNNILKDNNILKEEKTTKKKQKVNASPVVFQSFDEEPSIEGKEEKEN 298

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            +LI+++P+ + + LG     I +++ LS+G +I LDK  GE VDI  N + IAKGE+ +
Sbjct: 299 LELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVV 358

Query: 129 MEEDDTHFGVRVIEIL 144
           ++E   +FGVR+I+I+
Sbjct: 359 IDE---NFGVRIIDIV 371


>gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 379

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNILEKSTDNFDLI 72
           + +      P  +               K        P+   + D N   +    N D++
Sbjct: 241 QPKEPVTPEPRIEPQQQQQQPPKRQGTPKKAAPVQVSPVEFSAFDPNEASQAPIHNLDML 300

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++IP+ + + LG     +  ++ LS G +I LDK  GE VDI +N + +AKGE+ ++EE 
Sbjct: 301 LDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE- 359

Query: 133 DTHFGVRVIEILN 145
             +FGVRV +IL+
Sbjct: 360 --NFGVRVTDILS 370


>gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT]
 gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain
           [Clostridium novyi NT]
          Length = 396

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
           IK +L      ID P      + P N+    + ++ V       +    N +     N D
Sbjct: 260 IKSDLNKAPQQID-PKPAETYTQPQNS----VPQSQVSVQRANFAPLDQNPISGVPQNID 314

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LI+++P+++ ++LG     I  +++L  G +I LDK   E V+I +N +KIA GE+ +++
Sbjct: 315 LILDVPLEISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVD 374

Query: 131 EDDTHFGVRVIEILNAQ 147
           E   +FGVR++ I++ +
Sbjct: 375 E---NFGVRIVSIVSGE 388


>gi|188592198|ref|YP_001796796.1| flim: flagellar motor switching and energizing component.
           flin/mopa/spao family. [Cupriavidus taiwanensis LMG
           19424]
 gi|170938572|emb|CAP63559.1| FliM: flagellar motor switching and energizing component.
           fliN/mopA/spaO family [Cupriavidus taiwanensis LMG
           19424]
          Length = 148

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 59/97 (60%), Gaps = 6/97 (6%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           +  P++ ++ +      ++ ++I++IPV++ + LG   + I NL+ L++G V+ LD   G
Sbjct: 49  VFPPLAKEAPS---GFRNDIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAG 105

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           E +D+ +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 106 EPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 139


>gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
           SRS30216]
 gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
           SRS30216]
          Length = 249

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEP-ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           D    +       L  + D      P  +              DL+ ++ + + + LG  
Sbjct: 129 DAGGETLALIGLTLTAQPDTTPAPMPSFAPAGTPAPAGPRRTMDLLRDVQMDVTVELGRT 188

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            M + +L+ L+ G V+ LD+  G   D+ +N Q IA+GE+ +++ED   + +R+ EI+  
Sbjct: 189 SMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDED---YAIRITEIVTP 245

Query: 147 Q 147
           +
Sbjct: 246 E 246


>gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 399

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
              +P     +            P+SS    + +    N  LI+++P+++ + LG     
Sbjct: 281 GYGAPPMQPHVASNVPVQSAQFTPLSSVPVQVND---ANIGLILDVPLQVNVELGRTKKS 337

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I ++++L+KG ++ LDK  GE VDI +N + +AKGE+ +++E   +FGVR+ EI++ 
Sbjct: 338 IKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 391


>gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira
           defluvii]
 gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira
           defluvii]
          Length = 124

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
           N  +            D++          N     +  N + +++IP+++ + +GS  M 
Sbjct: 3   NGDTTAPPDASNAGAGDINVQPTSFPPVDNQNAVPANKNIEFVLDIPLQVTVQIGSTRML 62

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I  L+ L +G VI L+K  GE +++ +NN+ +A+GE+ ++ E    FG+R+ ++++ 
Sbjct: 63  IRELLQLGQGSVIELNKLAGEPMEVLVNNKLVARGEVVVVNE---KFGIRLTDVVSP 116


>gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7]
 gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7]
          Length = 157

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 5/112 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T  +E    +  ++       + + + LE    N D+I++IPV + + +G   + I NL+
Sbjct: 43  TPVAEPSTPRAPMEEFGAAPKAPTISGLEG--PNLDVILDIPVTISMEVGHTDISIRNLL 100

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 149


>gi|257095346|ref|YP_003168987.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047870|gb|ACV37058.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 145

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S           +  D+I++IPV++ + LG   + I NL+ L+ G V+ LD   GE +++
Sbjct: 48  SFGEQGNSGSLMNELDMILDIPVQLAVELGRTRITIKNLLQLAHGSVVELDAMAGEPLNV 107

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA+GE+ ++ +    FG+R+ +I+  
Sbjct: 108 FVNGTLIAQGEVVVVND---KFGIRLTDIVTP 136


>gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
 gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
          Length = 395

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
              +P     +            P+SS    + +    N  LI+++P+++ + LG     
Sbjct: 277 GYGAPPMQPHVASNVPVQSAQFTPLSSVPVQVND---ANIGLILDVPLQVNVELGRTKKS 333

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I ++++L+KG ++ LDK  GE VDI +N + +AKGE+ +++E   +FGVR+ EI++ 
Sbjct: 334 IKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 387


>gi|78485772|ref|YP_391697.1| Type III secretion system outer membrane O protein [Thiomicrospira
           crunogena XCL-2]
 gi|78364058|gb|ABB42023.1| Flagellar motor switch protein FliN [Thiomicrospira crunogena
           XCL-2]
          Length = 153

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
           +   EG     D+P      +     +E     +D  + +   + +          + D+
Sbjct: 17  QAEAEGSDAAGDDP---WGAALSEQAAETSSNNSDEIDAASFDALEKGRGDSSEKVDLDV 73

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +++IPV +Q+ +G   + I NL++ ++G VI +D+  GE +D+ +N   IA GE+ ++ +
Sbjct: 74  LLDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVIND 133

Query: 132 DDTHFGVRVIEILNAQ 147
               FGVR+ ++++ Q
Sbjct: 134 ---KFGVRLTDVVSPQ 146


>gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
 gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
          Length = 370

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 13/157 (8%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNS------EMLIQKNDVDNISEPI 54
            +KK+ ++ + ++  +        P       +  N +         IQKN V       
Sbjct: 210 FVKKLYRLLFGEEKKQASPQQQAQPSTPQQAPTTENENIQNVKMSENIQKNPVSVSPVQF 269

Query: 55  SSDSNNILEKST----DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
            S  +  + KST    +    +++IP+ + + LG   + +  ++ LS G +I LDK  GE
Sbjct: 270 QSFESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGE 329

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            VDI +N + IA+GE+ +++E   +FGVR+ EI++ Q
Sbjct: 330 PVDIIVNGKLIARGEVVVIDE---NFGVRITEIVSPQ 363


>gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
 gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
          Length = 389

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 74/135 (54%), Gaps = 6/135 (4%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
           + +++         P ++    +    +  +     V   +   + +S  + ++   N D
Sbjct: 251 VSEDINPTYQE--QPKEEWRRETNYLGNASVSSSPTVQE-AAFSNFESPTLSKQEHRNLD 307

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           +++++P+K+ + LG     IS++++LS G +I LDK  GE VDI +N + +A+GE+ ++E
Sbjct: 308 MLLDVPLKVTVELGRTKQSISDILDLSAGSIIELDKLAGEPVDILVNEKLVAEGEVVVIE 367

Query: 131 EDDTHFGVRVIEILN 145
           E   +FGVRV +I++
Sbjct: 368 E---NFGVRVTDIIS 379


>gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
           43541]
 gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
           43541]
          Length = 393

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
              +P     +            P+SS    + +    N  LI+++P+++ + LG     
Sbjct: 275 GYGAPPMQPHVASNVPVQSAQFTPLSSVPVQVND---ANIGLILDVPLQVNVELGRTKKS 331

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I ++++L+KG ++ LDK  GE VDI +N + +AKGE+ +++E   +FGVR+ EI++ 
Sbjct: 332 IKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 385


>gi|74317626|ref|YP_315366.1| flagellar motor switch/type III secretory pathway protein FliN
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057121|gb|AAZ97561.1| flagellar motor switch/type III secretory pathway protein FliN
           [Thiobacillus denitrificans ATCC 25259]
          Length = 132

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
               +       ++ D I++IPV + + LG   + I NL+ L++G V+ LD   GE +D+
Sbjct: 35  EFSGSASSTGLANDIDFILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDV 94

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA+GE+ ++ +    FGVR+ +I+  
Sbjct: 95  LVNGCLIAQGEVVVVND---KFGVRLTDIITP 123


>gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa]
 gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa]
          Length = 284

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
             +  ++ D ++++P+ + + +G+  M I +L+ L +G V+ LDK  GE ++I IN++ +
Sbjct: 196 TSEPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLV 255

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
           A+GE+ ++ +    +GVR+ +I++ 
Sbjct: 256 ARGEVVMVND---KYGVRLTDIVSP 277


>gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
           16841]
 gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
           16841]
          Length = 379

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNIL---EKSTDNFDLIM 73
           G    +  P+    +      +  + Q        +P    + N         +N  LIM
Sbjct: 251 GGQQVMGQPMMGQPMMGQPMMAPNMNQMYAQPVNVQPAQFQAFNPSIAQVAGAENIGLIM 310

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P+++ + LG     I  +++ + G +I L++  GE +DI +N + +AKGE+ ++EE  
Sbjct: 311 DVPLEVTVELGRTTKSIHEILDFAPGTIIELNRIAGEPIDILVNGKYVAKGEVVVIEES- 369

Query: 134 THFGVRVIEILN 145
             FGVR+ EI+ 
Sbjct: 370 --FGVRITEIVK 379


>gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1]
 gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58]
 gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
 gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
 gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1]
 gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
 gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN
 gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1]
 gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
 gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
 gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58]
 gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
          Length = 157

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T  +E    +  ++      S  +  I      N D+I++IPV + + +G   + I NL+
Sbjct: 43  TPVAEPSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 100

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 149


>gi|330445374|ref|ZP_08309026.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489565|dbj|GAA03523.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 129

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
            + +     + +  L ++ D    +  E ++ +S  I +      D IM+IPV + + +G
Sbjct: 3   DNNDQQMADDWAAALAEQADDVQPAPLEELTDESTPITDDERRKLDTIMDIPVTISMEVG 62

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 63  RTQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 119

Query: 145 N 145
           +
Sbjct: 120 S 120


>gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella
           australiensis 50-1 BON]
 gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella
           australiensis 50-1 BON]
          Length = 366

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 65/96 (67%), Gaps = 5/96 (5%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + + +++++  +L+ S  N +LIM+IP+++ + LG     + +++ L  G VI LD+  G
Sbjct: 268 VFQQLNNEAPEVLQGS--NMNLIMDIPLQVTVELGRTKKTVKDILELGTGSVIELDRLAG 325

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           E +DI +N + +A+GE+ +++E   +FGVR+IE+++
Sbjct: 326 EPIDILVNGKLVARGEVIVIDE---NFGVRIIEMID 358


>gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase
           [Carnobacterium sp. 17-4]
 gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase
           [Carnobacterium sp. 17-4]
          Length = 359

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 74/137 (54%), Gaps = 10/137 (7%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
           I D    ++  +  P++  + ++   + ++ IQK +   ++   S        K+  N D
Sbjct: 226 ITDRELPKAEEMTAPIEAVSQATSNADGKIGIQKPEFQELTHAGSL-------KTPRNLD 278

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LIM++P++  ++LG     I ++++L  G V+ L+K   E ++I +N + IA+GE+ ++ 
Sbjct: 279 LIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVIN 338

Query: 131 EDDTHFGVRVIEILNAQ 147
           E    FG+R+  IL+ +
Sbjct: 339 ES---FGIRITNILSKE 352


>gi|254491664|ref|ZP_05104843.1| flagellar motor switch protein FliN [Methylophaga thiooxidans
           DMS010]
 gi|224463142|gb|EEF79412.1| flagellar motor switch protein FliN [Methylophaga thiooxydans
           DMS010]
          Length = 155

 Score =  116 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
            Q  +  +     +   +         P++   ++   +   + D++M+IPV + + +G 
Sbjct: 30  AQQEDPWAEAMEEQAAAESTQQKANPAPVAQLDDDGKPRKDVDLDMVMDIPVTISMEIGR 89

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ LS+G V+ LD+  GE +D+ +N+  IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  TRISIRNLLQLSQGSVVELDRLAGEPMDVLVNDTLIAHGEVVVVND---KFGIRLTDVIS 146

Query: 146 A 146
           A
Sbjct: 147 A 147


>gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9]
 gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter italicus Ab9]
          Length = 375

 Score =  116 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 3/95 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +    + +   ++  +N +LI+++P+ + + LG     I +++ LS+G +I LDK  G
Sbjct: 274 VFQSFDEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAG 333

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           E VDI  N + IAKGE+ +++E   +FGVR+I+I+
Sbjct: 334 EPVDILANGKYIAKGEVVVIDE---NFGVRIIDIV 365


>gi|82702482|ref|YP_412048.1| surface presentation of antigens (SPOA) protein [Nitrosospira
           multiformis ATCC 25196]
 gi|82410547|gb|ABB74656.1| Surface presentation of antigens (SPOA) protein [Nitrosospira
           multiformis ATCC 25196]
          Length = 151

 Score =  116 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 18  RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
             M +     ++   +P +  E +          +      N    +  ++ DL+M+IPV
Sbjct: 19  EEMKVSVTPANSAARTPADQDETIGAGETGSG--QIFEQFQNTQKVQIQNDIDLVMDIPV 76

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           ++ + LG   + I NL+ L++G V+ LD   GE +D+ +N   IA+GE+ ++ E    FG
Sbjct: 77  QLTVQLGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVNE---KFG 133

Query: 138 VRVIEILNA 146
           +R+ +I+  
Sbjct: 134 IRLTDIITP 142


>gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4]
          Length = 392

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N DLIM++P+++ + LG     I  +++ + G +I L++  GE +D+ +N + +AKG
Sbjct: 315 QPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKG 374

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++EE    +G+R+ EI+ 
Sbjct: 375 EVVVIEES---YGIRITEIIK 392


>gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
 gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
          Length = 174

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +     +     +   N D+I++IPV + + +G   + I +L+ L++G V+ LD+  GE 
Sbjct: 75  DEFDPAATRAGGEDDQNIDVILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEP 134

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 135 LDVMVNGTLIAHGEVVVVNE---RFGIRLTDVISP 166


>gi|160896095|ref|YP_001561677.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
 gi|160361679|gb|ABX33292.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
          Length = 143

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 62/125 (49%), Gaps = 4/125 (3%)

Query: 23  DNPLQDTNVSSPTNNS-EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
           D+P      +       +  +++     ++           +   ++ +++++IPV++ +
Sbjct: 12  DDPFSGWAEALDEQRERDAKLEEEQGGPLTGEPVRPYAGGADVPVNDINMVLDIPVQLSV 71

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            LG   + I  ++ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ 
Sbjct: 72  ELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLT 128

Query: 142 EILNA 146
           +++  
Sbjct: 129 DVVTP 133


>gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName:
           Full=CheY-P phosphatase FliY; AltName: Full=Flagellar
           motor switch protein FliY
 gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis]
 gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 378

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIM 73
           + +      P  +          +   +K     +S  E  + D N  ++    N D+++
Sbjct: 241 QPKEPVTPEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPNEAVQAPIHNLDMLL 300

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IP+ + + LG     +  ++ LS G +I LDK  GE VDI +N + +AKGE+ ++EE  
Sbjct: 301 DIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE-- 358

Query: 134 THFGVRVIEILN 145
            +FGVRV +IL+
Sbjct: 359 -NFGVRVTDILS 369


>gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 368

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
           GR        +  + ++P      L    +          D+       + N  LIM++P
Sbjct: 236 GRGQATPAAGRMMDGAAPAVPG--LSWGGNAAAARTQPGQDTMYRSPAISGNLGLIMDVP 293

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + + + +G    ++ +++N + G V+ LDK+    VDI +N Q IA+GE+ ++++   +F
Sbjct: 294 LNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD---NF 350

Query: 137 GVRVIEILNAQ 147
           GVR+ EI+N +
Sbjct: 351 GVRITEIVNTR 361


>gi|288942629|ref|YP_003444869.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
           180]
 gi|288898001|gb|ADC63837.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
           180]
          Length = 148

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P           S  N ++++++PV + + +G   + I NL+ L++G V+ LD+  GE +
Sbjct: 50  PEDFSGFKPEPTSDVNLNMVLDVPVTISMEIGRTRIPIRNLLQLNQGSVVELDRLAGEPL 109

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 110 DVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 140


>gi|85859178|ref|YP_461380.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
 gi|85722269|gb|ABC77212.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
          Length = 163

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           ++  ++   V+                   + D I++IP+ + + LG C M IS L+ L 
Sbjct: 50  AQSQVKTPKVEVSPADFKEIPAGPKMDPQLDLDFILDIPLTLSVELGRCRMLISELLQLG 109

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +G +I L K  GE +D+ +N + IA+GE+ ++ E    FG+R+ +I++ 
Sbjct: 110 QGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNE---KFGIRLTDIVSP 155


>gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
           ATCC 12755]
          Length = 352

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 21  HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ 80
               P     V++PT       +  +   +S+P      +      DN DLI+++P+ + 
Sbjct: 225 ETPTPQPTAPVAAPTPEPAATSKPVE---VSKPAFQTLASSGVSDGDNLDLILDVPLDLS 281

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           ++LG     I ++++ + G VI L+K   E ++I +N + IA GE+ ++ E   +FGVR+
Sbjct: 282 VVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVINE---NFGVRI 338

Query: 141 IEILNAQ 147
             IL+ +
Sbjct: 339 TNILSQK 345


>gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
           L1-82]
 gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
           L1-82]
 gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1]
          Length = 392

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N DLIM++P+++ + LG     I  +++ + G +I L++  GE +D+ +N + +AKG
Sbjct: 315 QPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKG 374

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++EE    +G+R+ EI+ 
Sbjct: 375 EVVVIEES---YGIRITEIIK 392


>gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa]
          Length = 157

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T  +E    +  ++      S  +  I      N D+I++IPV + + +G   + I NL+
Sbjct: 43  TPVAESSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 100

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 149


>gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5]
 gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5]
          Length = 378

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIM 73
           + +      P  +          +   +K     +S  E  + D N  ++    N D+++
Sbjct: 241 QPKEPVTPEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPNEAVQAPIHNLDMLL 300

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IP+ + + LG     +  ++ LS G +I LDK  GE VDI +N + +AKGE+ ++EE  
Sbjct: 301 DIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE-- 358

Query: 134 THFGVRVIEILN 145
            +FGVRV +IL+
Sbjct: 359 -NFGVRVTDILS 369


>gi|303326579|ref|ZP_07357022.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
 gi|302864495|gb|EFL87426.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
          Length = 194

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGS 85
           +D +  S    +         D   + ++  S    + K     D I++IP+ +   LG 
Sbjct: 69  EDKSGPSTFGGAGAGGGGQTTDAHFKDMTEMSRQPRDNKLKRELDFILDIPLDVSAELGR 128

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I+ L+ L +G V+ L+K  GE +++ +N + +A+GE  ++ E    FGVR+ +I++
Sbjct: 129 TRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVVINE---KFGVRLTDIIS 185

Query: 146 A 146
            
Sbjct: 186 P 186


>gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
 gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
          Length = 352

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 7/124 (5%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDN----ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
           +T    PT        + +  +    +S+P      +      DN DLI+++P+ + ++L
Sbjct: 225 ETPTPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVNDGDNLDLILDVPLDLSVVL 284

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G     I ++++ + G VI L+K   E ++I +N + IA GE+ ++ E   +FGVR+  I
Sbjct: 285 GRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVINE---NFGVRITNI 341

Query: 144 LNAQ 147
           L+ +
Sbjct: 342 LSQK 345


>gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
           35243]
 gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
           35239]
 gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
           35243]
 gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
           35239]
          Length = 248

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
             ++  +N ++                K + ++ + P +S ++   E+  ++  L+ ++ 
Sbjct: 115 SATLEAENSVEGWLSVREIAAGAAGAPKKEGESATTPPASQASATAEQRAESMKLLYDVE 174

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + +   +G   + + ++++LS G VI LD+  G + D+ +N + IA GEI +++E+   +
Sbjct: 175 MTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEIVVVDEE---Y 231

Query: 137 GVRVIEILN 145
           G+R+ EI++
Sbjct: 232 GIRITEIVS 240


>gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
           15579]
 gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
           15579]
          Length = 390

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           +  +  ++ P Q+     P       ++        EP+S           +N DLI+++
Sbjct: 258 KKSAKAVEAPKQEIVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 313

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+ +++E   +
Sbjct: 314 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 370

Query: 136 FGVRVIEILNAQ 147
           FGVR+  I+++Q
Sbjct: 371 FGVRITNIVSSQ 382


>gi|88813209|ref|ZP_01128449.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
 gi|88789531|gb|EAR20658.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
          Length = 138

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           + + S+  N       N D+I+++PV + + LG   + I NL+ L++G V+ LD+  GE 
Sbjct: 39  DKLDSEPGNAGTDEDVNLDVILDVPVTLSMELGRTQIDIRNLLQLNQGSVVELDRLAGEP 98

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   +A GE+ ++ E    FG+R+ ++++
Sbjct: 99  LDVMVNGTLVAHGEVVVVNE---RFGIRLTDVVS 129


>gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
           43243]
          Length = 197

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 63/99 (63%), Gaps = 5/99 (5%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
              +P + D + + +K  +N DLIM++P+++ + LG     I +++  + G +I L+K  
Sbjct: 104 AAFQPFAGDLSALSQK--ENIDLIMDVPLEVTVELGRTSKTIKDILEFAPGTIIELNKIA 161

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           GESVD+ +N + +AKGE+ ++EE   +FGVR+ EI+  Q
Sbjct: 162 GESVDVLVNGKNVAKGEVVVIEE---NFGVRITEIIKEQ 197


>gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
 gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
          Length = 248

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
             ++  +N ++                K + ++ + P +S +    E+  ++  L+ ++ 
Sbjct: 115 SATLEAENSVEGWLSVREIAAGAAGAPKKEGESATTPPASQATATAEQRAESMKLLYDVE 174

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + +   +G   + + ++++LS G VI LD+  G + D+ +N + IA GEI +++E+   +
Sbjct: 175 MTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEIVVVDEE---Y 231

Query: 137 GVRVIEILN 145
           G+R+ EI++
Sbjct: 232 GIRITEIVS 240


>gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7]
 gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7]
          Length = 360

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
           ++ +SKI    +    +   +    + T   +P  N         +          ++  
Sbjct: 211 VRNISKIVLADEGEVIQDRQLPQAEEMTAPIAPAANQPTQETAGKIGIQKPEFQELTHAG 270

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
             K+  N DLIM++P++  ++LG     I ++++L  G V+ L+K   E ++I +N + I
Sbjct: 271 SLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLI 330

Query: 122 AKGEITIMEEDDTHFGVRVIEILNAQ 147
           A+GE+ ++ E    FG+R+  IL+ +
Sbjct: 331 AEGEVVVINES---FGIRITNILSKE 353


>gi|319898626|ref|YP_004158719.1| flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
 gi|319402590|emb|CBI76135.1| Flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
          Length = 171

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 74/116 (63%)

Query: 31  VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
            S P     +        NI    + +++N    ++ N +LIM+IPV++Q++LGS  M +
Sbjct: 56  GSKPGMPGSLGAGAAGKTNIGGLGAQNASNSTGDTSSNKELIMSIPVEVQVVLGSTTMPV 115

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FG+ + EI++ 
Sbjct: 116 ATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGISLTEIIDK 171


>gi|90579935|ref|ZP_01235743.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90438820|gb|EAS64003.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 129

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           + +     + +  L ++ D    +  E ++ D+  I +      D IM+IPV + + +G 
Sbjct: 4   NNDQQMADDWAAALAEQADDVQPAPLEELTDDTVAITDDERRKLDTIMDIPVTISMEVGR 63

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 64  TQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|298530626|ref|ZP_07018028.1| flagellar motor switch protein FliN [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510000|gb|EFI33904.1| flagellar motor switch protein FliN [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 187

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 11/139 (7%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEM--------LIQKNDVDNISEPISSDSNNILEKSTD 67
           E   M  D+   +   +  +   E          +     +   + ++ D+    E +  
Sbjct: 44  ESSEMSQDDLADEWAKALASEEEESFKDEQKQKSLSSQSKEAQFKDLTEDAKKKPEGTKR 103

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + D I++IP+ +   LG   + I+ L+ L +G VI L+K  GE +++ +N + +A+GE  
Sbjct: 104 DLDFILDIPLTVTAQLGGTQLLINELLQLGQGSVIELNKLAGEPMEVLVNGKLVARGEAV 163

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ E    FG+R+ +I++ 
Sbjct: 164 VINE---KFGIRLTDIISP 179


>gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
 gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657]
 gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
 gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str.
           657]
          Length = 386

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           +  +  ++ P Q+     P       ++        EP+S           +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+ +++E   +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366

Query: 136 FGVRVIEILNAQ 147
           FGVR+  I+++Q
Sbjct: 367 FGVRITSIVSSQ 378


>gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
           2916]
 gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
           2916]
          Length = 386

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           +  +  ++ P Q+     P       ++        EP+S           +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+ +++E   +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366

Query: 136 FGVRVIEILNAQ 147
           FGVR+  I+++Q
Sbjct: 367 FGVRITSIVSSQ 378


>gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1]
 gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1]
          Length = 154

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S   N  +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+
Sbjct: 58  SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 117

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 118 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 146


>gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 386

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 72/132 (54%), Gaps = 7/132 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           +  +  ++ P Q+     P       ++        EP+S   +       +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLSIRESATT--MPNNIDLILDV 309

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+ +++E   +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366

Query: 136 FGVRVIEILNAQ 147
           FGVR+  I+++Q
Sbjct: 367 FGVRITSIVSSQ 378


>gi|160880834|ref|YP_001559802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium phytofermentans ISDg]
 gi|160429500|gb|ABX43063.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium phytofermentans ISDg]
          Length = 401

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
            +S       M+   N      +P  +  + +L+  T+N DL++++P+++ + LG     
Sbjct: 291 GMSMQQVPQGMVQNVNIAPAQFQPFVNTGSPLLQ--TENIDLLLDVPLEVTVELGRTSKS 348

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I  +++ + G ++ L++  GE +D+ +N + +AKGE+ ++EE    FG+RV +I+ 
Sbjct: 349 IREILDFAPGTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEA---FGIRVTDIIK 401


>gi|83647848|ref|YP_436283.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
 gi|83635891|gb|ABC31858.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
          Length = 172

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +D+   S     ++         + D+I++IPV + + +G+  + I NL+ L++G VI L
Sbjct: 65  DDIRAASFETFDETMPTSAPGAPDLDVILDIPVTISMEVGNTQIAIRNLLQLNQGSVIEL 124

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 125 DRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 163


>gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
           20603]
 gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
           20603]
          Length = 259

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCM 88
            SP  ++     +    + +EP        +  S    D   L+ ++ + + + +G   +
Sbjct: 140 PSPAASARTAQAEPSAPSPTEPEIRPFTPPMMGSGTGDDKLRLLYDVEMTLTVEIGRAKL 199

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +  +++L+ G ++ LD+  G   D+ +N   +A+GE+ +++ED   +G+RV EI++ 
Sbjct: 200 PVRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDED---YGLRVTEIIDT 254


>gi|90411031|ref|ZP_01219045.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
 gi|90328244|gb|EAS44555.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
          Length = 129

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 6/123 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISS---DSNNILEKSTDNFDLIMNIPVKMQII 82
           +   +     + +  L ++        P+     +S  I +      D IM+IPV + + 
Sbjct: 1   MSQNDQQMADDWAAALAEQTVDGAQPAPLEELVDESTPISDDERRKLDTIMDIPVTISME 60

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           +G   + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +
Sbjct: 61  VGRTQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTD 117

Query: 143 ILN 145
           +++
Sbjct: 118 VIS 120


>gi|218778862|ref|YP_002430180.1| flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760246|gb|ACL02712.1| Flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
           AK-01]
          Length = 119

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            D I++IP+ + + LG   M+I +L+ L +G V+ L K  GE ++I +N +  A+GE+ +
Sbjct: 37  LDFILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVV 96

Query: 129 MEEDDTHFGVRVIEILNAQ 147
           + E    FGVR+ +I++ Q
Sbjct: 97  VNE---KFGVRLTDIVSPQ 112


>gi|157961197|ref|YP_001501231.1| flagellar motor switch protein [Shewanella pealeana ATCC 700345]
 gi|157846197|gb|ABV86696.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
          Length = 126

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 4/118 (3%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D+        +E  I++     + E  +SD   + E+     D IM+IPV + + +G   
Sbjct: 4   DSGDDWAAAMAEQAIEEAKAVELDE-FNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSF 62

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  INIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117


>gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
           43531]
 gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
           43531]
          Length = 396

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 3/103 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
            ++V   S   +  S   ++ +  N  LI+++P+++ + LG     I  +++L+KG ++ 
Sbjct: 289 ASNVPVQSAQFTPLSTVPVQVNDANIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVE 348

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           LDK  GE VDI +N + +AKGE+ +++E   +FGVR+ EI++ 
Sbjct: 349 LDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 388


>gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra]
 gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str.
           Okra]
          Length = 386

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           +  +  ++ P Q+     P       ++        EP+S           +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEIVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+ +++E   +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366

Query: 136 FGVRVIEILNAQ 147
           FGVR+  I+++Q
Sbjct: 367 FGVRITSIVSSQ 378


>gi|330808226|ref|YP_004352688.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376334|gb|AEA67684.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 152

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 8/116 (6%)

Query: 31  VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
            +    ++   +Q  +  ++ +     S+  +     N D+I++IPV + + +GS  + I
Sbjct: 37  AADTGAHASSRLQMEEFGSVPK-----SHEPVTLDGPNLDVILDIPVSISMEVGSTDINI 91

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            NL+ L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 92  RNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 144


>gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter
           hydrocarbonoclasticus]
          Length = 166

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             + +   ++ DV                  + + D+I++IPV + + +G+  + I NL+
Sbjct: 49  GGDDQPEAERQDVRTAPMEEFGADQGAGGGESPDIDVILDIPVTISMEVGNTQIPIRNLL 108

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 109 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 157


>gi|167623387|ref|YP_001673681.1| flagellar motor switch protein [Shewanella halifaxensis HAW-EB4]
 gi|167353409|gb|ABZ76022.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
          Length = 125

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 10/126 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           M  D     + ++    +    ++ ++  N S P+S D            D IM+IPV +
Sbjct: 1   MSTDTDDWASAMAEQAIDEAKAVEFDEFSNESAPLSEDE-------VSKLDAIMDIPVTI 53

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R
Sbjct: 54  SMEVGRSFINIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIR 110

Query: 140 VIEILN 145
           + ++++
Sbjct: 111 LTDVIS 116


>gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall]
 gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           Hall]
 gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
           Kyoto]
          Length = 386

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           +  +  ++ P Q+     P       ++        EP+S           +N DLI+++
Sbjct: 254 KKPTKAVEAPKQEIVYEKPIEREAPKVEIKQAS--FEPLS--VRESATTMPNNIDLILDV 309

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+ +++E   +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366

Query: 136 FGVRVIEILNAQ 147
           FGVR+  I+++Q
Sbjct: 367 FGVRITSIVSSQ 378


>gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
 gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI]
          Length = 422

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS--------TDNFDLIMNIPV 77
            +D +   P   +E L      +    P +  +     +             DLI++IP+
Sbjct: 288 FEDFSRPEPGKEAERLQGPPAWEQEIRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPL 347

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           K+ +ILG     I +++ L+ G V+ L   V E V++ +N   +A GE+ ++ E   +FG
Sbjct: 348 KVTVILGRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNE---NFG 404

Query: 138 VRVIEILNAQ 147
           VR+  I+  +
Sbjct: 405 VRITSIIGPE 414


>gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str.
           Langeland]
 gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
           Langeland]
 gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
           230613]
          Length = 386

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           +  +  ++ P Q+     P       ++        EP+S           +N DLI+++
Sbjct: 254 KKPAKAVEAPKQEMIYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+ +++E   +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366

Query: 136 FGVRVIEILNAQ 147
           FGVR+  I+++Q
Sbjct: 367 FGVRITSIVSSQ 378


>gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297]
 gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297]
          Length = 165

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 70/127 (55%), Gaps = 5/127 (3%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQ 80
           D  L D   ++   + +     +D   ++  E   S + +   +   N D+I++IPV + 
Sbjct: 35  DQALADEWAAAMEESGDADSDDSDDPQVAPLEQFDSTAGSEFNEDNPNLDVILDIPVTIS 94

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + +G+  + I NL+ L++G VI LD+  GE +D+ +N + IA GE+ ++ E    FG+R+
Sbjct: 95  MEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVVMVNE---KFGIRL 151

Query: 141 IEILNAQ 147
            ++++ Q
Sbjct: 152 TDVVSQQ 158


>gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8]
 gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8]
          Length = 166

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             + +   ++ DV                  + + D+I++IPV + + +G+  + I NL+
Sbjct: 49  GGDDQPEAERQDVRTAPMEEFGADQGPGGGESPDIDVILDIPVTISMEVGNTQIPIRNLL 108

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 109 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 157


>gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 408

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P      ++ + D+   +    + +  ++    +N D+++++ +++ + LG    +I  +
Sbjct: 295 PGMPPSSVVFQPDMQIATPQFQNFNQIVVPTGAENIDILLDVALEVSVELGRTKKKIREI 354

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++ S+G +I LDK VGE +DI +N + IA GE+ +++E   +FGVR+  I+  +
Sbjct: 355 LDFSEGSIIELDKLVGEPIDILVNGKFIASGEVVVIDE---NFGVRIKSIIKPE 405


>gi|78358624|ref|YP_390073.1| surface presentation of antigens (SPOA) protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221029|gb|ABB40378.1| Surface presentation of antigens (SPOA) protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 175

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
                +   +      D I++IP+ +   LG   + I+ L+ L +G V+ L+K  GE ++
Sbjct: 78  TEEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLE 137

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I +N + +A+GE  ++ E    FGVR+ +I++ 
Sbjct: 138 IYVNGKLVARGEAVVINE---KFGVRLTDIISP 167


>gi|42524696|ref|NP_970076.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
           HD100]
 gi|39576906|emb|CAE78135.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
           HD100]
          Length = 122

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
            S+ +      N  LI++IP+K+ + LG   M +S L+NL++G VI L K  GE +++ +
Sbjct: 28  ASSEMPTHKDRNLSLILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYV 87

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N++ IA+GE  ++ E    FGVR+ +I++ 
Sbjct: 88  NDKLIARGEAVVVNE---KFGVRLTDIISP 114


>gi|330961231|gb|EGH61491.1| flagellar motor switch protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 153

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
             S   +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ 
Sbjct: 58  PKSTGPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 117

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 118 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 145


>gi|237799246|ref|ZP_04587707.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022101|gb|EGI02158.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 153

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+
Sbjct: 69  PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 128

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ E    FG+R+ ++++ 
Sbjct: 129 VVVNE---KFGIRLTDVISP 145


>gi|89075521|ref|ZP_01161932.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89048793|gb|EAR54364.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 129

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           + +     + +  L ++ D    +  E ++ ++  I +      D IM+IPV + + +G 
Sbjct: 4   NNDQQMADDWAAALAEQADDVQPAPLEELTDETVPITDDERRKLDTIMDIPVTISMEVGR 63

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 64  TQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402
           065]
          Length = 386

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           +  +  ++ P Q+     P       ++        EP+S           +N DLI+++
Sbjct: 254 KKPAKVVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ ++LG   M + +++NL  G +I LDK   E V+I +N +K+A GE+ +++E   +
Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366

Query: 136 FGVRVIEILNAQ 147
           FGVR+  I+++Q
Sbjct: 367 FGVRITSIVSSQ 378


>gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct]
          Length = 158

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T  +E    +  ++      S  +  I      N D+I++IPV + + +G   + I NL+
Sbjct: 43  TPVAEPSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 100

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G VI LD+  GE +D+ +N   IA GE+  + E    FG+R+ ++++ 
Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVAVNE---KFGIRLTDVISP 149


>gi|127512305|ref|YP_001093502.1| flagellar motor switch protein [Shewanella loihica PV-4]
 gi|126637600|gb|ABO23243.1| flagellar motor switch protein FliN [Shewanella loihica PV-4]
          Length = 127

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +DT        +E  +++     + E ++  S  + E+     D IM+IPV + + +G  
Sbjct: 4   EDTGDDWAAAMAEQALEEAQAVELDE-LADSSKPLTEEEAAKLDTIMDIPVTISMEVGRS 62

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  FINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
           35937]
          Length = 112

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    FG+R+ ++++ 
Sbjct: 89  VIND---RFGIRLTDVVSP 104


>gi|302185373|ref|ZP_07262046.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
           642]
          Length = 152

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
             S+  +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ 
Sbjct: 57  PKSSGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144


>gi|218288307|ref|ZP_03492606.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241666|gb|EED08839.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 381

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
            Q  N         + +++    +  E     +     +   N  L+ ++P+ + + LG 
Sbjct: 260 AQAANRGREDEGPSVAVRRPAFPDFDE----GATPRDARPVANLSLLYDVPLNVTVELGR 315

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
               I  ++ L+ G ++ LDK  GE VDI +N +KIA GE+ +++E   +FGVRV +I+ 
Sbjct: 316 AKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAIGEVVVIDE---NFGVRVTDIVQ 372

Query: 146 A 146
           A
Sbjct: 373 A 373


>gi|28869174|ref|NP_791793.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967549|ref|ZP_03395697.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato T1]
 gi|301382886|ref|ZP_07231304.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061096|ref|ZP_07252637.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302131288|ref|ZP_07257278.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28852414|gb|AAO55488.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927850|gb|EEB61397.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           tomato T1]
 gi|330876027|gb|EGH10176.1| flagellar motor switch protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964685|gb|EGH64945.1| flagellar motor switch protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 152

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
             S   +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ 
Sbjct: 57  PKSAGPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144


>gi|330953759|gb|EGH54019.1| flagellar motor switch protein [Pseudomonas syringae Cit 7]
          Length = 152

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
             S   +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ 
Sbjct: 57  PKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144


>gi|66046675|ref|YP_236516.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|289678974|ref|ZP_06499864.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
           FF5]
 gi|63257382|gb|AAY38478.1| Surface presentation of antigens (SPOA) protein [Pseudomonas
           syringae pv. syringae B728a]
 gi|330899438|gb|EGH30857.1| flagellar motor switch protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330940698|gb|EGH43709.1| flagellar motor switch protein [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330976006|gb|EGH76072.1| flagellar motor switch protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 152

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
             S   +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ 
Sbjct: 57  PKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144


>gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium
           HP15]
          Length = 163

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 5/122 (4%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVD--NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           +D   ++     E    ++DV    + E  +    ++      + D+I++IPV + + +G
Sbjct: 36  EDEWAAAMAEAGETGEAEDDVQAAPMEEFETGSEPSMGGGPAPDIDVILDIPVTISMEVG 95

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ +++
Sbjct: 96  NTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVI 152

Query: 145 NA 146
           + 
Sbjct: 153 SP 154


>gi|300113611|ref|YP_003760186.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
 gi|299539548|gb|ADJ27865.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
          Length = 153

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 10/131 (7%)

Query: 23  DNPLQDTNVSSPTNNSEML---IQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNI 75
           D P Q       +   E +   ++K +V ++S P +     +++        N +LI++I
Sbjct: 18  DAPSQSQVGELDSGQEEKVTSEVKKEEVASMSGPQAVLEELEADPGNVTKDINLELILDI 77

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           PV M + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ E    
Sbjct: 78  PVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVVNE---K 134

Query: 136 FGVRVIEILNA 146
           FG+R+ ++++A
Sbjct: 135 FGIRLTDVISA 145


>gi|26991046|ref|NP_746471.1| flagellar motor switch protein [Pseudomonas putida KT2440]
 gi|24986078|gb|AAN69935.1|AE016632_6 flagellar motor switch protein FliN [Pseudomonas putida KT2440]
          Length = 161

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S   N  +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+
Sbjct: 65  SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 124

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 125 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 153


>gi|330972447|gb|EGH72513.1| flagellar motor switch protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 152

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
             S   +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ 
Sbjct: 57  PKSTGPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144


>gi|71733965|ref|YP_275530.1| flagellar motor switch protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484905|ref|ZP_05638946.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289629022|ref|ZP_06461976.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289651612|ref|ZP_06482955.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487823|ref|ZP_07005863.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554518|gb|AAZ33729.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157548|gb|EFH98628.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325125|gb|EFW81194.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329384|gb|EFW85377.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866456|gb|EGH01165.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330889049|gb|EGH21710.1| flagellar motor switch protein [Pseudomonas syringae pv. mori str.
           301020]
 gi|330986500|gb|EGH84603.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331011075|gb|EGH91131.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 152

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
             S   +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ 
Sbjct: 57  PKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144


>gi|5921671|gb|AAD56295.1| FliN [Pseudomonas putida]
 gi|313497807|gb|ADR59173.1| FliN [Pseudomonas putida BIRD-1]
          Length = 160

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S   N  +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+
Sbjct: 64  SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 123

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 124 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 152


>gi|331016993|gb|EGH97049.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 152

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+
Sbjct: 68  PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 127

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ E    FG+R+ ++++ 
Sbjct: 128 VVVNE---KFGIRLTDVISP 144


>gi|289208345|ref|YP_003460411.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
 gi|288943976|gb|ADC71675.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
          Length = 203

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
           D L  ++    +  +  +        E   + +      +P    ++  +     N  ++
Sbjct: 65  DELLNQAQASSSGSESADALMGAEKRERKHKPDPEAEPLKPEELAASAGMSAEDINLQMV 124

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           +++PV + + +G   + I NL+ L++G V+ LD+  GE++D+ +N   IA GE+ ++ E 
Sbjct: 125 LDVPVTISMEIGRSRIPIRNLLQLNQGSVVELDRLAGEALDVLVNGTLIAHGEVVVVNE- 183

Query: 133 DTHFGVRVIEILNA 146
              FG+R+ ++++ 
Sbjct: 184 --KFGIRLTDVISP 195


>gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
 gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
          Length = 254

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 61/103 (59%), Gaps = 3/103 (2%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
            K + ++ + P +S +    E+  ++  L+ ++ + +   +G   + + ++++LS G VI
Sbjct: 147 PKKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVI 206

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            LD+  G + D+ +N + IA GEI +++E+   +G+R+ EI++
Sbjct: 207 ELDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 246


>gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
           EF01-2]
 gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
           EF01-2]
          Length = 163

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           N  E+  ++ + +++IPV++ + LG   + I  ++ L++G V+ LD   GE +D+ +N  
Sbjct: 70  NGGEQVINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGY 129

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
            IA+GE+ ++ +    FG+R+ +++  
Sbjct: 130 LIAQGEVVVVND---KFGIRLTDVVTP 153


>gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
           8271]
          Length = 373

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            +N DLI ++P+++ + LG     I +++ L  G V+ LD+  GE VD+ +N + IAK E
Sbjct: 288 PNNLDLIFDVPLQVSVELGKANKTIKDILELGPGSVVELDRIAGEPVDMIVNGKLIAKCE 347

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           + ++ E    FG+R+ EI+N
Sbjct: 348 VVVINET---FGIRITEIIN 364


>gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens
           16/4]
          Length = 394

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + +N DLI+++P+ + + LG     I ++++ + G +I L+K  GE +D+ +N + +AKG
Sbjct: 316 AQENIDLILDVPLDVTVELGRTNKTIQDILDFAPGTIIELNKIAGEPIDVLVNGKYVAKG 375

Query: 125 EITIMEEDDTHFGVRVIEILNA 146
           E+ ++EE    FGVR+ EI+  
Sbjct: 376 EVVVIEES---FGVRITEIIKE 394


>gi|241763647|ref|ZP_04761697.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
 gi|241367122|gb|EER61488.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
          Length = 145

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 12/121 (9%)

Query: 35  TNNSEMLIQKNDVDNISE------PISSDS---NNILEKSTDNFDLIMNIPVKMQIILGS 85
              +E L ++   D+         P+S +     +   ++ ++ +++++IPV++ + LG 
Sbjct: 18  AGWAEALEEQKRSDDAPADAEQGGPLSGEPVRPFSSGGETVNDINMVLDIPVQLSVELGR 77

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I  ++ L++G V+ LD   GE +D+ +N   IA+GE+ ++ +    FG+R+ +++ 
Sbjct: 78  TKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 134

Query: 146 A 146
            
Sbjct: 135 P 135


>gi|327481258|gb|AEA84568.1| flagellar motor switch protein [Pseudomonas stutzeri DSM 4166]
          Length = 160

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D+I++IPV + + +GS  + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+
Sbjct: 76  PNLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEV 135

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ E    FG+R+ ++++ 
Sbjct: 136 VVVNE---KFGIRLTDVISP 152


>gi|313905142|ref|ZP_07838511.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Eubacterium cellulosolvens 6]
 gi|313470045|gb|EFR65378.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Eubacterium cellulosolvens 6]
          Length = 578

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 3/111 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           N +    Q N + ++  P  +D  +  E+  DN +++M +P+++ + +G     I +++ 
Sbjct: 464 NQARAAKQNNTIRSLKSPQYTDVPDGGEEVDDNREMLMKVPMEISVEVGRTRKPIKDILE 523

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           L++G ++ LDK  GE  D+ +N + IA G+I ++E+   +FG+R+ EILN 
Sbjct: 524 LTQGSLVVLDKMAGEQADLYVNGECIAHGDIVVVED---NFGIRITEILNK 571


>gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
 gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
          Length = 375

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
              T      + + +   + +VD       S  N        N +LI ++P+++ + LG 
Sbjct: 251 ASTTGQPVSGSANRVSAGEENVDVKRAQFPSFDNGNTAPLPQNMELIQDVPLEVTVRLGK 310

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             M I  +++L +G ++ L+K  GE VD+ +N + IAKGE+ +++E   +FG RV +I++
Sbjct: 311 TRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVVVIDE---NFGFRVKDIIS 367

Query: 146 A 146
            
Sbjct: 368 P 368


>gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 112

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    FG+R+ ++++ 
Sbjct: 89  VIND---RFGIRLTDVVSP 104


>gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 112

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    FG+R+ ++++ 
Sbjct: 89  VVND---RFGIRLTDVVSP 104


>gi|167034914|ref|YP_001670145.1| flagellar motor switch protein [Pseudomonas putida GB-1]
 gi|166861402|gb|ABY99809.1| flagellar motor switch protein FliN [Pseudomonas putida GB-1]
          Length = 154

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S   N  +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+
Sbjct: 58  SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 117

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 118 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 146


>gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P
           phosphatase fliY) (Flagellar motor switch protein fliY)
           [NC10 bacterium 'Dutch sediment']
          Length = 324

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQ---KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           L +T+ + P N++ +  +        +   P    +        +  D+++++ +++ + 
Sbjct: 196 LPETDKAQPHNDTLVAKEDTVSATSASAQAPFVPLTGGERVGPNNGIDMLLDVNLQVSVE 255

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   +QI +++ L  G ++ LDK+ G++VDI +N++ IAKGE+ I++E   +FGVR+  
Sbjct: 256 LGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEVIIIDE---NFGVRLTS 312

Query: 143 ILN 145
           I +
Sbjct: 313 ITS 315


>gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetohalobium arabaticum DSM 5501]
 gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetohalobium arabaticum DSM 5501]
          Length = 408

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           S  + ++  VD  S   S       E+     DLI ++P+++ + LG   M I +++ L 
Sbjct: 296 SGAVSREESVDVQSVEFSQLGEGQTEQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELG 355

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            G VI LDK  GESVD+ +N + IAKGE+ +++E   +FG RV +I++ 
Sbjct: 356 NGSVIELDKLAGESVDLLVNGKLIAKGEVVVIDE---NFGFRVTDIVSP 401


>gi|258511385|ref|YP_003184819.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478111|gb|ACV58430.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 381

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
            Q  N         + +++    +  E ++        +   N  L+ ++P+ + + LG 
Sbjct: 260 AQAANRGREDEGPSVAVRRPAFPDFDEGVT----PRDARPVANLSLLYDVPLNVTVELGR 315

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
               I  ++ L+ G ++ LDK  GE VDI +N +KIA GE+ +++E   +FGVRV +I+ 
Sbjct: 316 AKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAIGEVVVIDE---NFGVRVTDIVQ 372

Query: 146 A 146
           A
Sbjct: 373 A 373


>gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 83

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++
Sbjct: 1   DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 60

Query: 130 EEDDTHFGVRVIEILNA 146
            +    +GVR+ +I+  
Sbjct: 61  AD---KYGVRITDIITP 74


>gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
 gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
          Length = 153

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
            +     + +  V+ +     ++ +        + DLIM+IPV + + LG+  + I NL+
Sbjct: 37  EDEWAAAMSEQKVEPVKLETLTNPSVPSGGVGSDLDLIMDIPVVLSMELGNTEIAIRNLM 96

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    +G+R+ ++++ 
Sbjct: 97  QLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVVVVND---KYGIRLTDVVSP 145


>gi|319405390|emb|CBI79009.1| Flagellar motor switch protein fliY [Bartonella sp. AR 15-3]
          Length = 170

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 3/133 (2%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIM 73
             S     PL      +P                +   SS ++ + + + D   N +LIM
Sbjct: 38  PGSFGAGAPLSGAATPTPGAKPGAPAFGAGAAGKTTIGSSGASKVPQNAGDTSSNTELIM 97

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV++Q++LGS  M +S L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D 
Sbjct: 98  SIPVEVQVVLGSTTMPVSTLMDLGRGAVITLDKQIGDPIDIVVNGRVIARGEVIVLEDDP 157

Query: 134 THFGVRVIEILNA 146
           + FGV + EI++ 
Sbjct: 158 SRFGVSLTEIIDK 170


>gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 112

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ 
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 128 IMEEDDTHFGVRVIEILNA 146
           ++ +    FG+R+ ++++ 
Sbjct: 89  VIND---RFGIRLTDVVSP 104


>gi|120598258|ref|YP_962832.1| flagellar motor switch protein [Shewanella sp. W3-18-1]
 gi|146293664|ref|YP_001184088.1| flagellar motor switch protein [Shewanella putrefaciens CN-32]
 gi|120558351|gb|ABM24278.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
 gi|145565354|gb|ABP76289.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
 gi|319427063|gb|ADV55137.1| flagellar motor switch protein FliN [Shewanella putrefaciens 200]
          Length = 127

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +DT        +E  +++ +   + E +  DS  I +      D I++IPV + + +G  
Sbjct: 4   EDTGDDWAAAMAEQALEEANAVALDE-LVDDSQPISKADAAKLDTILDIPVTISMEVGRS 62

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121]
 gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121]
          Length = 150

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 5/112 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              +  + +++      E ++         +    DLIM+IPV + + LGS  + I NL+
Sbjct: 36  DEWAAAMSEQDAKPVELEELTPSLGAP--DAPAGMDLIMDIPVTLSMELGSTSIAIRNLL 93

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    +G+R+ ++++ 
Sbjct: 94  QLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVVND---KYGIRLTDVVSP 142


>gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. campestris]
          Length = 112

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S  +    + +  N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+
Sbjct: 16  SLHAERDQDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDV 75

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA GE+ ++ +    FG+R+ ++++ 
Sbjct: 76  YVNGTLIAHGEVVVIND---RFGIRLTDVVSP 104


>gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
 gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
          Length = 106

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
             + +      +    E  ++  DLI++IPV + + +G   M I NL+ L++G ++ LD+
Sbjct: 2   AQDSAMEQPKQTTLPQEADSEKMDLILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDR 61

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
             G+ +D+ +N   +A GE+ ++ +    FGVR+ +I++ 
Sbjct: 62  LAGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 98


>gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
 gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
          Length = 112

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 6/99 (6%)

Query: 51  SEPISSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           + P + DS    +       N D+I+++PV + + +G   + I NL+ L++G V+ L++ 
Sbjct: 9   ASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERG 68

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            GE +D+ +N   IA GE+ ++ +    FG+R+ ++++ 
Sbjct: 69  AGEPLDVYVNGTLIAHGEVVVIND---RFGIRLTDVVSP 104


>gi|54294678|ref|YP_127093.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Lens]
 gi|53754510|emb|CAH15994.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
           Lens]
          Length = 109

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           +N +E ++  +    +   +  +LI++IPV + + +G   M I NL+ L++G ++ LD+ 
Sbjct: 6   ENTTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 65

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            G+ +D+ +N   +A GE+ ++ +    FGVR+ +I++ 
Sbjct: 66  AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 101


>gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
           19865]
 gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
           19865]
          Length = 112

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S      L  +  N D+I+++PV + + +G   + I NL+ L++G V+ L++  GE +D+
Sbjct: 16  SLQPERDLNATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDV 75

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA GE+ ++ +    FG+R+ ++++ 
Sbjct: 76  YVNGTLIAHGEVVVIND---RFGIRLTDVVSP 104


>gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 109

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 61/91 (67%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            ++    + +  N D I+ IPV +Q++LGS  M +SNL+ L +G VI LD RVGE VDI 
Sbjct: 14  GETTTAKDLNNRNLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVIPLDHRVGEPVDIV 73

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N + IA+GE+ ++E+D++ FGV + EI+  
Sbjct: 74  VNGRVIARGEVVVVEDDNSRFGVSLTEIVGP 104


>gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis]
 gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis]
          Length = 150

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
            S       + + D+I++IPV++ + +G+  + I NL+ L++G VI LD+  GE +D+ +
Sbjct: 56  ASARHQRNGSPDLDVILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLV 115

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 116 NGTLIAHGEVVVVNE---KFGIRMTDVISP 142


>gi|170748132|ref|YP_001754392.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654654|gb|ACB23709.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
          Length = 130

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 2/125 (1%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
           + +P +  +  S             ++  +E        +   S  N D I+ IPV MQ+
Sbjct: 1   MSSPSEQPSTESGQGGGHSESLFTRIEAQAEGQRVHDERL--GSGRNLDSILRIPVLMQV 58

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           +LGS  M +SNL+ L +G ++ LD RVGE VD+ +N + IA+GE+ ++E+D++ FGV + 
Sbjct: 59  VLGSATMPVSNLMKLGRGAIVPLDHRVGEPVDVVVNGRVIARGEVVVVEDDNSRFGVSLT 118

Query: 142 EILNA 146
           EI+  
Sbjct: 119 EIVGP 123


>gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum
           BKT015925]
 gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum
           BKT015925]
          Length = 417

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 7/136 (5%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
              +E + +   +  Q T        +     +  V+      +      +  +  N DL
Sbjct: 281 SPKVEPKPVETYSQPQYTTAPQMQYTA----PQPQVNIQKASFAPLQEANINGAPQNIDL 336

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I+++P+++ ++LG     I +++ L  G +I LDK   E V+I +N +KIA GE+ +++E
Sbjct: 337 ILDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDE 396

Query: 132 DDTHFGVRVIEILNAQ 147
              +FGVR++ I++ +
Sbjct: 397 ---NFGVRIVNIVSGE 409


>gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107]
 gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107]
          Length = 133

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
                  S  + D+I++IPV + + +G   + I NL+ L++G VI LD+  GE +D+ +N
Sbjct: 40  PEPGKRNSNPDLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVN 99

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 100 GTLIAHGEVVVVNE---KFGIRMTDVISP 125


>gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 572

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 6   SKISYIKDNLEGRSMH----IDNPLQDTNVSS--PTNNSEMLIQ--KNDVDNISEPISSD 57
            ++  +   LE  +      ++ P+  T   +  P  N   +    +N     S P    
Sbjct: 417 YEVGLLLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQSVPEERV 476

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           S    + + D  +LI+++P+ + ++LG     I +++ L+ G V+ L   V E V++ +N
Sbjct: 477 SQTPADVNWDKINLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVN 536

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              +A+GE+ ++ E   +FGVR+  ++  Q
Sbjct: 537 GTLVARGEVVVVNE---NFGVRITNVITPQ 563


>gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17]
 gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17]
          Length = 172

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           N  +   +KN+V        S  +    K + + D+IM+IPV + + +G+  + I NL+ 
Sbjct: 56  NRDKKSDKKNNVRAAPMEEFSSDSVNTSKGSPDLDVIMDIPVTISMEVGNTMIPIRNLLQ 115

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           L++G VI LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++ 
Sbjct: 116 LNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVND---KFGIRLTDVMSP 163


>gi|319409197|emb|CBI82841.1| Flagellar motor switch protein fliY [Bartonella schoenbuchensis R1]
          Length = 165

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
           G       P   T  +  T +S      +    +    ++++     +   N +LIM+IP
Sbjct: 38  GAGASAQKPGMSTPGA--TASSGPAFTASAGKTVGSMGATNAQKNTNEVHSNPELIMSIP 95

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V++QI+LGS  M ++NL++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + F
Sbjct: 96  VEVQIVLGSTTMPVANLMDLGRGSVITLDKQIGDPIDIIVNGRIIARGEVIVLEDDPSRF 155

Query: 137 GVRVIEILNA 146
           GV + E++  
Sbjct: 156 GVSLTEVMGK 165


>gi|86356303|ref|YP_468195.1| flagellar motor switch protein [Rhizobium etli CFN 42]
 gi|86280405|gb|ABC89468.1| flagellar motor switch protein [Rhizobium etli CFN 42]
          Length = 214

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/97 (46%), Positives = 73/97 (75%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S    + S  +    T NF+LIM+IP+ +QI+LG+  MQ+S+L+NL++G  I LDK++GE
Sbjct: 116 SSSFEASSAPLGSALTSNFELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGE 175

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 176 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 212


>gi|77457774|ref|YP_347279.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
 gi|77381777|gb|ABA73290.1| putative flagellar motor switch protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 152

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 12/136 (8%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
           +++  E     ID  L     +S +N    + +   V   ++P++ D          N D
Sbjct: 21  LEETGEAGQADIDALLAADAGTSSSNRL-PMEEFGSVPKNNDPVTLDGP--------NLD 71

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           +I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ ++ 
Sbjct: 72  VILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVN 131

Query: 131 EDDTHFGVRVIEILNA 146
           E    FG+R+ ++++ 
Sbjct: 132 E---KFGIRLTDVISP 144


>gi|88858100|ref|ZP_01132742.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
 gi|88819717|gb|EAR29530.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
          Length = 131

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           M  D    D   ++     E+  Q  +V  + E +S+    I ++     D I++IPV +
Sbjct: 1   MSDDQDTMDEWAAALAEADEVENQDVEVAEL-EELSNQPAEITQEEKRKLDTILDIPVTI 59

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R
Sbjct: 60  SMEVGRSKISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIR 116

Query: 140 VIEILN 145
           + ++++
Sbjct: 117 LTDVIS 122


>gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
 gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
          Length = 155

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + +P+ + +      S  + + I+++PV++   LG   + I +L+ LS+G V+ LD   G
Sbjct: 54  VFQPLQAMATGA--GSPVDVERILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAG 111

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + +D+ IN   IA+GE+ ++ E    +G+R+ +I+  
Sbjct: 112 QPLDVLINGYLIAQGEVVVVNE---KYGIRLTDIVTP 145


>gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1]
 gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
          Length = 411

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
            ++      N DLI++IP+K+ +ILG     I +++ ++ G V+ LD    E VDI +N 
Sbjct: 316 TSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILVNG 375

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
             +A GE+ ++ E   +FG+R+  I++ 
Sbjct: 376 TLVATGEVVVVNE---NFGIRITNIISP 400


>gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea
           MMB-1]
 gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea
           MMB-1]
          Length = 150

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 12/140 (8%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKND-------VDNISEPISSDSNNILEKST-- 66
              +  +D+ L D   ++ + + +   +  D        +   +P+  D           
Sbjct: 6   NPDAAGMDSELADEWAAAMSESGDEATEDVDDVWAEAMSEQEVKPVQFDELPATTDGAIS 65

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            + DLIM+IPV + + LG   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+
Sbjct: 66  SDLDLIMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEV 125

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ +    +G+R+ ++++ 
Sbjct: 126 VVVND---KYGIRLTDVVSP 142


>gi|85711034|ref|ZP_01042094.1| flagellar motor switch protein [Idiomarina baltica OS145]
 gi|85694947|gb|EAQ32885.1| flagellar motor switch protein [Idiomarina baltica OS145]
          Length = 140

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           +  + +   S    + +   ++++    +E    ++ ++ +      D I++IPV + + 
Sbjct: 12  EAAMAEQAASEEGESGDNADKQSEGVRTAELEELNAESLDDGDKRKLDAILDIPVTISME 71

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           +G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ ++ +    FG+R+ +
Sbjct: 72  VGRSQISIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTD 128

Query: 143 ILN 145
           +++
Sbjct: 129 VIS 131


>gi|114562368|ref|YP_749881.1| flagellar motor switch protein [Shewanella frigidimarina NCIMB 400]
 gi|114333661|gb|ABI71043.1| flagellar motor switch protein FliN [Shewanella frigidimarina NCIMB
           400]
          Length = 127

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +DT        +E  +++ +   + E +  DS  I ++     D I++IPV + + +G  
Sbjct: 4   EDTGDDWAAAMAEQALEEAEHVELDE-LVDDSRPITKEEAAKLDGILDIPVTISMEVGRS 62

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC1989]
 gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC1989]
          Length = 150

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
           ++      +  D+           + ++    + + D++      +     +  +   DL
Sbjct: 11  ENTENTEDVSADDDWAAAMQEQEVSENQESENQENADSLGFEEFDNDPTAGKAISPELDL 70

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I++IPV + + +GS  + I NL+ L++G VI LD+  GE +++ +N   IA GE+ ++ E
Sbjct: 71  ILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPLNVLVNGTLIAHGEVVVVNE 130

Query: 132 DDTHFGVRVIEILNA 146
               FG+R+ ++++ 
Sbjct: 131 ---KFGIRMTDVISP 142


>gi|170741400|ref|YP_001770055.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
 gi|168195674|gb|ACA17621.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
          Length = 125

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 62/107 (57%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
                  +   +  ++         +  N D ++ IPV +Q++LGS  M ++NL+ L +G
Sbjct: 13  SASHAEALFGTAATMAPPRAEETVGAGRNLDSVLRIPVLIQVVLGSATMPVANLMKLGRG 72

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            ++ LD RVGE VDI +N + IA+GE+ ++EED++ FGV + EI+  
Sbjct: 73  AIVPLDHRVGEPVDIMVNGRVIARGEVVVVEEDNSRFGVSLTEIVGP 119


>gi|307824487|ref|ZP_07654712.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
           SV96]
 gi|307734471|gb|EFO05323.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
           SV96]
          Length = 126

 Score =  113 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +       +       ++       N D+I+++PV + + +G   + I NL+ L++G V+
Sbjct: 18  EAAAFQEFNNQFEDKKSSSSVGDEVNLDVILDVPVTISMEIGRTQINIRNLLQLNQGSVV 77

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L++  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++ 
Sbjct: 78  ELERFAGEPLDVLVNGTLIAHGEVVVIND---KFGIRLTDVISP 118


>gi|285018172|ref|YP_003375883.1| flagellar motor switch/type III secretory pathway protein flin
           [Xanthomonas albilineans GPE PC73]
 gi|283473390|emb|CBA15895.1| probable flagellar motor switch/type III secretory pathway protein
           flin [Xanthomonas albilineans]
          Length = 112

 Score =  113 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           M   + +    ++  S     + E +  N D+I+++P+ + + +G   + I NL+ L++G
Sbjct: 1   MSQNETNQAEPAQFESLQQETVAETNDLNLDVILDVPITLSLEVGRSRIPIRNLLQLNQG 60

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            V+ L++  GE +D+ +N   IA GE+  + +    FGVR+ ++++ 
Sbjct: 61  SVVELERGAGEPLDVYVNGTLIAHGEVVTIND---RFGVRLTDVVSP 104


>gi|256158145|ref|ZP_05456061.1| Flagellar motor switch FliN protein [Brucella ceti M490/95/1]
 gi|256252904|ref|ZP_05458440.1| Flagellar motor switch FliN protein [Brucella ceti B1/94]
 gi|261219992|ref|ZP_05934273.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
 gi|265996663|ref|ZP_06109220.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
 gi|260918576|gb|EEX85229.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
 gi|262550960|gb|EEZ07121.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
          Length = 98

 Score =  113 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 61/91 (67%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S +      S  N DLIM IPV +Q++LG   M +S+L+ L +G VITLDK++G+ VDI 
Sbjct: 8   SHAARKKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIV 67

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N + IA+GE+ ++E+D + FGV + EI+  
Sbjct: 68  VNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 98


>gi|269961628|ref|ZP_06175990.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833669|gb|EEZ87766.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 136

 Score =  113 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
             +   +   + S   I  +++     E +   S  I E      D IM+IPV + + +G
Sbjct: 10  ADEWAAALGEDPSAPSIDVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893]
 gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893]
          Length = 172

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
              + E     + +       + D+I++IPV + + +G+  + I NL+ L++G VI LD+
Sbjct: 67  AAPMEEFPEGSNFSQGTGPAPDLDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDR 126

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
             GE +D+ +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 127 LAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 163


>gi|170722846|ref|YP_001750534.1| flagellar motor switch protein [Pseudomonas putida W619]
 gi|169760849|gb|ACA74165.1| flagellar motor switch protein FliN [Pseudomonas putida W619]
          Length = 154

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+
Sbjct: 70  PNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 129

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ E    FG+R+ ++++ 
Sbjct: 130 VVVNE---KFGIRLTDVISP 146


>gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 401

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 14/136 (10%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
           +  +E R+   + P++      P   S             +P+S   +   E    N DL
Sbjct: 272 QSQMEQRTPVYEKPIETNVNKQPVEVSRAS---------FQPLSGSQDT--EVVPKNIDL 320

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I+++P+++ ++LG     I +++NL  G +I LDK   E V+I +N +K+A GE+ +++E
Sbjct: 321 ILDVPLEISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVIDE 380

Query: 132 DDTHFGVRVIEILNAQ 147
              +FGVR+  I++ +
Sbjct: 381 ---NFGVRITGIVSNE 393


>gi|24374732|ref|NP_718775.1| flagellar motor switch protein [Shewanella oneidensis MR-1]
 gi|24349392|gb|AAN56219.1|AE015759_11 flagellar motor switch protein FliN [Shewanella oneidensis MR-1]
          Length = 124

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 64/117 (54%), Gaps = 6/117 (5%)

Query: 32  SSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           S+  + +  + ++   +  +   + +  DS  I +      D I++IPV + + +G   +
Sbjct: 2   STDDDWAAAMAEQALEEANAVGLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSFI 61

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 62  SIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115


>gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Halanaerobium praevalens DSM 2228]
          Length = 417

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
            +  VD  S           +   +N +LI ++P+++ + LG   M+I ++++L  G +I
Sbjct: 310 SEEKVDVQSAQFPEFDQTATQPLPNNMELIKDVPLEVTVRLGKTVMKIRDILDLGDGSII 369

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            LDK  GE VD+ +N + +AKGE+ +++E   +FG RV +I++ 
Sbjct: 370 ELDKLAGEPVDLLVNGKLVAKGEVVVIDE---NFGFRVKDIISP 410


>gi|262393596|ref|YP_003285450.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
 gi|262337190|gb|ACY50985.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
          Length = 136

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
             +   +   + S   +  ++V     E +   S+ I E      D IM+IPV + + +G
Sbjct: 10  ADEWAAALGEDPSAPSVDVDEVLAAPLEELKDTSSPITEDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|91223553|ref|ZP_01258818.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269965695|ref|ZP_06179808.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91191639|gb|EAS77903.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269829763|gb|EEZ83999.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 136

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
             +   +   + S   +  ++V     E +   S+ I E      D IM+IPV + + +G
Sbjct: 10  ADEWAAALGEDPSAPSVDVDEVLAAPLEELKDTSSPISEDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|91792692|ref|YP_562343.1| flagellar motor switch protein [Shewanella denitrificans OS217]
 gi|91714694|gb|ABE54620.1| Flagellar motor switch FliN [Shewanella denitrificans OS217]
          Length = 127

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +DT        +E  I++     + E +  DS  I ++     D I++IPV + + +G  
Sbjct: 4   EDTGDDWAAAMAEQAIEEAQQIELDE-LVDDSRPITKEEAAKLDSILDIPVTISMEVGRS 62

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|113969633|ref|YP_733426.1| flagellar motor switch protein [Shewanella sp. MR-4]
 gi|114046863|ref|YP_737413.1| flagellar motor switch protein [Shewanella sp. MR-7]
 gi|113884317|gb|ABI38369.1| flagellar motor switch protein FliN [Shewanella sp. MR-4]
 gi|113888305|gb|ABI42356.1| flagellar motor switch protein FliN [Shewanella sp. MR-7]
          Length = 124

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 64/117 (54%), Gaps = 6/117 (5%)

Query: 32  SSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           S+  + +  + ++   +  +   + +  DS  I +      D I++IPV + + +G   +
Sbjct: 2   STDDDWAAAMAEQALEEANAIDLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSYI 61

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 62  SIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115


>gi|269103168|ref|ZP_06155865.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163066|gb|EEZ41562.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 128

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E ++ DS  + +      D I++IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 29  EELTDDSAPVSDDERRKLDSILDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRVAGES 88

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 89  LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 119


>gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 383

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 7   KISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
           K+   K  ++  +   +   +++  + P   +  + Q  +V   +    +       +  
Sbjct: 241 KVVEEKPVVKATTQKAEAEKRESIQAKPIVEAPRVQQPIEVHEAA--FETLVPGDTAQVP 298

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N DLI+++P+ + ++LG     I +++NLS G +I LDK   E V+I +N +KIA GE+
Sbjct: 299 KNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEV 358

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E   +FGVR+  I++
Sbjct: 359 VVVDE---NFGVRITSIVS 374


>gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Corby]
 gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Corby]
          Length = 109

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           +  +E ++  +    +   +  +LI++IPV + + +G   M I NL+ L++G ++ LD+ 
Sbjct: 6   ETSAEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 65

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            G+ +D+ +N   +A GE+ ++ +    FGVR+ +I++ 
Sbjct: 66  AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 101


>gi|312962265|ref|ZP_07776757.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
           WH6]
 gi|311283602|gb|EFQ62191.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
           WH6]
          Length = 155

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+
Sbjct: 71  PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ E    FG+R+ ++++ 
Sbjct: 131 VVVNE---KFGIRLTDVISP 147


>gi|86146128|ref|ZP_01064454.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|148976421|ref|ZP_01813127.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|218708831|ref|YP_002416452.1| flagellar motor switch protein [Vibrio splendidus LGP32]
 gi|85836075|gb|EAQ54207.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|145964244|gb|EDK29500.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|218321850|emb|CAV17825.1| Flagellar motor switch protein fliN [Vibrio splendidus LGP32]
          Length = 136

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
             +   +   + S   I  +DV     + ++  S+ I E      D IM+IPV + + +G
Sbjct: 10  ADEWAAALGEDPSAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|254503358|ref|ZP_05115509.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
 gi|222439429|gb|EEE46108.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
          Length = 130

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIIL 83
           + D  V +    +   I+  D  N +   + D  N  +   D  N D I+ IPV +Q++L
Sbjct: 1   MSDKIVENVDVETGATIKTADAANFARVEAPDKKNAGDTMGDDRNLDTILGIPVNIQVVL 60

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           GS  M +SNL+ L +G VI L+ RVGE +DI +N + IA+GE+ ++E+D++ FGV + EI
Sbjct: 61  GSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVVEDDNSRFGVSLTEI 120

Query: 144 LNAQ 147
           +++Q
Sbjct: 121 ISSQ 124


>gi|126175120|ref|YP_001051269.1| flagellar motor switch protein [Shewanella baltica OS155]
 gi|153001444|ref|YP_001367125.1| flagellar motor switch protein [Shewanella baltica OS185]
 gi|160876169|ref|YP_001555485.1| flagellar motor switch protein [Shewanella baltica OS195]
 gi|217972624|ref|YP_002357375.1| flagellar motor switch protein [Shewanella baltica OS223]
 gi|304409951|ref|ZP_07391570.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|307302336|ref|ZP_07582094.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|125998325|gb|ABN62400.1| flagellar motor switch protein FliN [Shewanella baltica OS155]
 gi|151366062|gb|ABS09062.1| flagellar motor switch protein FliN [Shewanella baltica OS185]
 gi|160861691|gb|ABX50225.1| flagellar motor switch protein FliN [Shewanella baltica OS195]
 gi|217497759|gb|ACK45952.1| flagellar motor switch protein FliN [Shewanella baltica OS223]
 gi|304351360|gb|EFM15759.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|306914374|gb|EFN44795.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|315268365|gb|ADT95218.1| flagellar motor switch protein FliN [Shewanella baltica OS678]
          Length = 126

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
            DT+  +     + L + N ++   + +  DS  I +      D I++IPV + + +G  
Sbjct: 4   DDTDDWAAAMAEQALEEANAIE--LDELVDDSRPITKAEAAKLDTILDIPVTISMEVGRS 61

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 62  YISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117


>gi|332305667|ref|YP_004433518.1| flagellar motor switch protein FliN [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172996|gb|AEE22250.1| flagellar motor switch protein FliN [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 131

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           M  +  L D   +      E            + +  D + I        D I++IPV +
Sbjct: 1   MSEEEGLDDWAAAMAEQADEENKDAAATVADFDELEEDKD-ITPAEKRKLDTILDIPVTI 59

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R
Sbjct: 60  SMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIR 116

Query: 140 VIEILN 145
           + ++++
Sbjct: 117 LTDVIS 122


>gi|28899015|ref|NP_798620.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836941|ref|ZP_01989608.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|260365239|ref|ZP_05777796.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
 gi|260878789|ref|ZP_05891144.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AN-5034]
 gi|260897384|ref|ZP_05905880.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           Peru-466]
 gi|260899943|ref|ZP_05908338.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AQ4037]
 gi|4322005|gb|AAD15908.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus]
 gi|28807234|dbj|BAC60504.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749714|gb|EDM60459.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|308088279|gb|EFO37974.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           Peru-466]
 gi|308094260|gb|EFO43955.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AN-5034]
 gi|308107230|gb|EFO44770.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
           AQ4037]
 gi|308115407|gb|EFO52947.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
 gi|328474448|gb|EGF45253.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
          Length = 136

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
             +   +   + S   I  ++V     E +   S  I +      D IM+IPV + + +G
Sbjct: 10  ADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSRPITDDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|52842018|ref|YP_095817.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|296107382|ref|YP_003619082.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
           2300/99 Alcoy]
 gi|52629129|gb|AAU27870.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|295649283|gb|ADG25130.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
           2300/99 Alcoy]
 gi|307610491|emb|CBX00063.1| flagellar motor switch protein FliN [Legionella pneumophila 130b]
          Length = 109

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           +  +E ++  +    +   +  +LI++IPV + + +G   M I NL+ L++G ++ LD+ 
Sbjct: 6   ETSTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 65

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            G+ +D+ +N   +A GE+ ++ +    FGVR+ +I++ 
Sbjct: 66  AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 101


>gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein
 gi|71042011|pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein
          Length = 87

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +D  +L+++IP+K+ + LG   M +  ++ +  G +I LDK  GE VDI +N + IA+GE
Sbjct: 1   SDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGE 60

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + +++E   +FGVR+ EI++ +
Sbjct: 61  VVVIDE---NFGVRITEIVSPK 79


>gi|153834118|ref|ZP_01986785.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|156975422|ref|YP_001446329.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116]
 gi|148869488|gb|EDL68486.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|156527016|gb|ABU72102.1| hypothetical protein VIBHAR_03153 [Vibrio harveyi ATCC BAA-1116]
          Length = 136

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
             +   +   + S   I  ++V     E +   S+ I +      D IM+IPV + + +G
Sbjct: 10  ADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSSPITDDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|121602197|ref|YP_989410.1| flagellar motor switch protein fliY [Bartonella bacilliformis
           KC583]
 gi|120614374|gb|ABM44975.1| flagellar motor switch protein fliY [Bartonella bacilliformis
           KC583]
          Length = 139

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 69/92 (75%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           SS +      +++N +L+M+IPV++QI+LGS  M ++NL+NL +G VITL+K++G+ +DI
Sbjct: 48  SSKTQENTNDASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDI 107

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N + IA+GE+ ++E+D + FGV + E+++ 
Sbjct: 108 VVNGRIIARGEVIVLEDDSSRFGVSLTEVIDK 139


>gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Ethanoligenens harbinense YUAN-3]
 gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Ethanoligenens harbinense YUAN-3]
          Length = 374

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P  +    +  +  +NF+LI  +P+ + + +G     +  +++ + G +I LDK+ G+ V
Sbjct: 280 PQFAPQPVLSHEEQNNFELIQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPV 339

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           DI +N Q IA+GE+ +++E   +FGVR+ EI+  Q
Sbjct: 340 DIIVNGQLIAQGEVVVIDE---NFGVRITEIIGKQ 371


>gi|70729041|ref|YP_258775.1| flagellar motor switch protein [Pseudomonas fluorescens Pf-5]
 gi|68343340|gb|AAY90946.1| flagellar motor switch protein FliN [Pseudomonas fluorescens Pf-5]
          Length = 153

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+
Sbjct: 69  PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 128

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ E    FG+R+ ++++ 
Sbjct: 129 VVVNE---KFGIRLTDVISP 145


>gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
 gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
          Length = 246

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           PL+ ++V +     E L+     D  + P +S +    ++     +++  + +++ + +G
Sbjct: 126 PLEGSDVVAALLVPEALLAHPADDTPALPTTSAAAPTGDR--RGIEMLHGVDMEVTVEIG 183

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              M +  L++L+ G V+ LD+  G   D+ +N + IA+GE+ +++ED   FG+R+ EI+
Sbjct: 184 RARMTVRELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDED---FGLRITEIV 240

Query: 145 N 145
            
Sbjct: 241 T 241


>gi|117618193|ref|YP_855912.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559600|gb|ABK36548.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 130

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
              +  L ++   +    P+    D   I  +     D I++IPV + + +G   + I N
Sbjct: 12  DAWAAALEEQVTAEAKPAPLEELKDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 71

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           L+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 72  LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121


>gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88]
 gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88]
          Length = 416

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 9   SYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD--SNNILEKST 66
               + L    + +          SPT + E    +     + E I       +  E+  
Sbjct: 270 ITGGEELSKTQVEMQREQATYTNESPTYHRETPRVQEKPIEVQEAIFQPLQQTSKGEELP 329

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N DLIM++P+ + ++LG   + I  ++NL  G +I LDK   E V+I +N + +A GE+
Sbjct: 330 RNIDLIMDVPLDISVVLGRTKLNIKEILNLGTGSLIELDKLAEEPVEILVNGKPVAFGEV 389

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E   +FGVR+ +I+N
Sbjct: 390 VVIDE---NFGVRITDIVN 405


>gi|157376190|ref|YP_001474790.1| flagellar motor switch protein [Shewanella sediminis HAW-EB3]
 gi|157318564|gb|ABV37662.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
          Length = 127

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +DT        +E  I++     + E ++  +  + E+     D IM+IPV + + +G  
Sbjct: 4   EDTGDDWAEAMAEQAIEEAQAVELDE-LTDTAAALSEEDVAKLDSIMDIPVTISMEVGRS 62

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|104782810|ref|YP_609308.1| flagellar motor switch protein [Pseudomonas entomophila L48]
 gi|95111797|emb|CAK16521.1| flagellar motor switch protein FliN [Pseudomonas entomophila L48]
          Length = 154

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S   N  +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+
Sbjct: 58  SPKLNENVSLEGPNLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 117

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N   IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 118 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 146


>gi|109899344|ref|YP_662599.1| flagellar motor switch protein [Pseudoalteromonas atlantica T6c]
 gi|109701625|gb|ABG41545.1| flagellar motor switch protein FliN [Pseudoalteromonas atlantica
           T6c]
          Length = 131

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           M  +  L D   +      E     N      + +  D   I        D I++IPV +
Sbjct: 1   MSEEEGLDDWAAAMAEQADEESKDGNATVAEYDELEEDKE-ISPAEKRKLDTILDIPVTI 59

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            + +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R
Sbjct: 60  SMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIR 116

Query: 140 VIEILN 145
           + ++++
Sbjct: 117 LTDVIS 122


>gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
           str. Eklund]
 gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
           str. Eklund]
          Length = 388

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           P      S P  +S     +  V+      +    + +  +  N DLI+++P+++ ++LG
Sbjct: 265 PKPVETYSQPQVSS----PQPQVNIQKATFAPLGESPINGAPQNIDLILDVPLEISVVLG 320

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
                I  ++ L  G +I LDK   E V+I +N +KIA GE+ +++E   +FGVR++ I+
Sbjct: 321 KTKKSIKEVLELGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDE---NFGVRIMNIV 377

Query: 145 NAQ 147
           + +
Sbjct: 378 SGE 380


>gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp]
 gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
          Length = 155

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+
Sbjct: 71  PNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ E    FG+R+ ++++ 
Sbjct: 131 VVVNE---KFGIRLTDVISP 147


>gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Paris]
 gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
           Paris]
          Length = 111

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 9/99 (9%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            N   P++ DS N      +  +LI++IPV + + +G   M I NL+ L++G ++ LD+ 
Sbjct: 14  QNQGNPLNPDSGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 67

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            G+ +D+ +N   +A GE+ ++ +    FGVR+ +I++ 
Sbjct: 68  AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 103


>gi|119775424|ref|YP_928164.1| flagellar motor switch protein [Shewanella amazonensis SB2B]
 gi|119767924|gb|ABM00495.1| flagellar motor switch protein FliN [Shewanella amazonensis SB2B]
          Length = 124

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +  ++  +  +     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE +D
Sbjct: 27  LKDETKPLSSEEAAKLDAILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLD 86

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 87  VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115


>gi|311992319|gb|ADQ26733.1| flagellar motor switch protein [Aeromonas hydrophila]
          Length = 129

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
              +  L ++   +    P+    D   I  +     D I++IPV + + +G   + I N
Sbjct: 11  DAWAAALEEQVTAEAKPAPLEELKDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 70

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           L+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 71  LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|330828807|ref|YP_004391759.1| flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
 gi|328803943|gb|AEB49142.1| Flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
          Length = 130

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
              +  L ++   +    P+    D   I  +     D I++IPV + + +G   + I N
Sbjct: 12  DAWAAALEEQVTAEAKPAPLEELKDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 71

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           L+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 72  LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121


>gi|27365288|ref|NP_760816.1| flagellar motor switch protein [Vibrio vulnificus CMCP6]
 gi|37680657|ref|NP_935266.1| flagellar motor switch protein [Vibrio vulnificus YJ016]
 gi|320155672|ref|YP_004188051.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
 gi|27361435|gb|AAO10343.1| Flagellar motor switch protein fliN [Vibrio vulnificus CMCP6]
 gi|37199406|dbj|BAC95237.1| polar flagellar switch protein FliN [Vibrio vulnificus YJ016]
 gi|319930984|gb|ADV85848.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
          Length = 136

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 35  TNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
               +    + DVD +     E +   S  I        D IM+IPV + + +G   + I
Sbjct: 16  ALGEDPAAPEIDVDEVLAAPLEELKDTSAPITADERRKLDTIMDIPVTISMEVGRSQISI 75

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 76  RNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
           str. 1873]
 gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
           str. 1873]
          Length = 394

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
              +   P         +  V+      +    + +  +  N DLI+++P+++ ++LG  
Sbjct: 269 SSNSQVEPKPVETYTKSQPQVNIQKASFAPLQESNINGAPQNIDLILDVPLEISVVLGKT 328

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              I +++ L  G +I LDK   E V+I +N +KIA GE+ +++E   +FGVR++ I++ 
Sbjct: 329 KKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDE---NFGVRIVNIVSG 385

Query: 147 Q 147
           +
Sbjct: 386 E 386


>gi|117919798|ref|YP_868990.1| flagellar motor switch protein [Shewanella sp. ANA-3]
 gi|117612130|gb|ABK47584.1| flagellar motor switch protein FliN [Shewanella sp. ANA-3]
          Length = 124

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 64/117 (54%), Gaps = 6/117 (5%)

Query: 32  SSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           S+  + +  + ++   +  +   + +  +S  I +      D I++IPV + + +G   +
Sbjct: 2   STDDDWAAAMAEQALEEANAIDLDELVDESQPISKAEAAKLDTILDIPVTISMEVGRSYI 61

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 62  SIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115


>gi|229591842|ref|YP_002873961.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
 gi|229363708|emb|CAY51093.1| probable flagellar motor switch protein [Pseudomonas fluorescens
           SBW25]
          Length = 155

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           N+ +     N D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N 
Sbjct: 63  NDPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNG 122

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
             IA GE+ ++ E    FG+R+ ++++ 
Sbjct: 123 TLIAHGEVVVVNE---KFGIRLTDVISP 147


>gi|163801853|ref|ZP_02195750.1| flagellar motor switch protein [Vibrio sp. AND4]
 gi|159174361|gb|EDP59165.1| flagellar motor switch protein [Vibrio sp. AND4]
          Length = 136

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
             +   +   + S   I  ++V     E +   S+ I +      D IM+IPV + + +G
Sbjct: 10  ADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSSPITDDERRKLDSIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas
           maltophilia K279a]
 gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14]
 gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas
           maltophilia K279a]
 gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14]
          Length = 111

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           + ++      SS   +       N D+I+++PV + + +G   + I NL+ L++G V+ L
Sbjct: 5   DALEPTPAQFSSLQADEANGPDLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGSVVEL 64

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++  GES+D+ +N   IA GE+ ++ +    FGVR+ ++++ 
Sbjct: 65  ERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVSP 103


>gi|332994113|gb|AEF04168.1| flagellar motor switch protein [Alteromonas sp. SN2]
          Length = 133

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
           +   ++     + +DV        +D   I ++     D I++IPV + + +G   + I 
Sbjct: 14  AEQADSEADDQENDDVQVAELDELTDDTPITQEEKKKLDTILDIPVTISMEVGRSQISIR 73

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 74  NLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 124


>gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 397

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
            ++V   S   +  S   ++ +  N  LI+++P+++ + LG     I  +++L+KG ++ 
Sbjct: 290 ASNVPVQSAQFTPLSTVPVQVNDANIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVE 349

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           LDK  GE+VDI +N + +AKGE+ +++E   +FGVR+ EI++ 
Sbjct: 350 LDKLAGETVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 389


>gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium
           sticklandii DSM 519]
 gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium
           sticklandii]
          Length = 383

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
             N       +N DLI ++ +K+ + LG     I +++  + G ++ LD+ VGE +DI +
Sbjct: 290 SPNKRTGNVPENIDLIKDVLLKVTVELGRTTKPIDDILQFTPGSILELDRLVGEPLDIMV 349

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           N +K+AKGE+ +++E   ++G+R+ +I+ A+
Sbjct: 350 NGKKVAKGEVVVIDE---NYGIRITDIIKAE 377


>gi|163750542|ref|ZP_02157780.1| flagellar motor switch protein [Shewanella benthica KT99]
 gi|161329697|gb|EDQ00686.1| flagellar motor switch protein [Shewanella benthica KT99]
          Length = 127

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +DT        +E  I++     + E ++ +S          FD IM+IPV + + +G  
Sbjct: 4   EDTGDDWAAAMAEQAIEEAQAVELDE-LTDESQVFPADEAVKFDTIMDIPVTISMEVGRS 62

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  FISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|84388119|ref|ZP_00991015.1| flagellar motor switch protein [Vibrio splendidus 12B01]
 gi|84377186|gb|EAP94056.1| flagellar motor switch protein [Vibrio splendidus 12B01]
          Length = 136

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 10/129 (7%)

Query: 24  NPLQDTNVS---SPTNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIP 76
            P +D  ++   +     + L    DVD++     + ++  S+ I E      D IM+IP
Sbjct: 2   EPSEDQKLADEWAAALGEDPLAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIP 61

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V + + +G   + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    F
Sbjct: 62  VTISMEVGRSQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KF 118

Query: 137 GVRVIEILN 145
           G+R+ ++++
Sbjct: 119 GIRLTDVIS 127


>gi|269836615|ref|YP_003318843.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
           20745]
 gi|269785878|gb|ACZ38021.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
           20745]
          Length = 144

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 20  MHIDNPLQDTNVSSPTNNS---EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
              D P      ++P   +      +       +S+   S           + + + ++ 
Sbjct: 18  QSFDRPEGTGETAAPGEQAGGEAASVHPAAFMALSQETQS-------GGPQSIEFLRDVE 70

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V++   LG+  MQI +++ L  G V+ L++  GE VDI +N   IA+GE+ +++E    F
Sbjct: 71  VELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDE---KF 127

Query: 137 GVRVIEILNAQ 147
            VRV+EI+  +
Sbjct: 128 AVRVVEIVPPE 138


>gi|15642124|ref|NP_231756.1| flagellar motor switch protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121727203|ref|ZP_01680370.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
 gi|153213272|ref|ZP_01948684.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
 gi|153803022|ref|ZP_01957608.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
 gi|153818985|ref|ZP_01971652.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
 gi|153822883|ref|ZP_01975550.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|153828628|ref|ZP_01981295.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
 gi|227082250|ref|YP_002810801.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
 gi|254291361|ref|ZP_04962154.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
 gi|254849210|ref|ZP_05238560.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
 gi|297582023|ref|ZP_06943942.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
 gi|298497853|ref|ZP_07007660.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
 gi|9656675|gb|AAF95270.1| flagellar motor switch protein FliN [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121630448|gb|EAX62841.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
 gi|124116072|gb|EAY34892.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
 gi|124121420|gb|EAY40163.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
 gi|126510480|gb|EAZ73074.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
 gi|126519579|gb|EAZ76802.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|148875899|gb|EDL74034.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
 gi|150422691|gb|EDN14645.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
 gi|227010138|gb|ACP06350.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
 gi|254844915|gb|EET23329.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
 gi|297533718|gb|EFH72560.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
 gi|297542186|gb|EFH78236.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
          Length = 138

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
            ++   +   + +   I  +++     E + + +  I +      D IM+IPV + + +G
Sbjct: 12  AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 71

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 72  RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 128

Query: 145 N 145
           +
Sbjct: 129 S 129


>gi|294140211|ref|YP_003556189.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
 gi|293326680|dbj|BAJ01411.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
          Length = 127

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +DT        +E  I++       E ++ +   +  + +   D IM+IPV + + +G  
Sbjct: 4   EDTGDDWADAMAEQAIEEAQAVEFDE-LNDEGQALNAEDSVKLDTIMDIPVTISMEVGRS 62

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|149188093|ref|ZP_01866388.1| flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148838081|gb|EDL55023.1| flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 136

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 7/115 (6%)

Query: 35  TNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
               + +  + DVD +     + +      I E      D IM+IPV + + +G   + I
Sbjct: 16  ALGEDPMAPEIDVDEVLAAPLDELQDSPAPISEDERRKLDTIMDIPVTISMEVGRSQISI 75

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 76  RNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
           mobilis SJ95]
 gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
           mobilis SJ95]
          Length = 372

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 81/149 (54%), Gaps = 8/149 (5%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
             +K+ ++    +   G++   +   +++N    +N++ +  +K  V  +          
Sbjct: 223 FAQKIRELV---EKTFGKTTEDEESSKNSNTQKRSNSNVIKEKKVKVQPVEFGEFEKKEE 279

Query: 61  ILEKSTD--NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
            +  + D    +L++++P+++++ LGS  + +  ++ L +G +I L+K  GE +DI  N 
Sbjct: 280 PISPNIDLSKLELLLDVPLELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANG 339

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + IA+GE+ +++E   +FG+RV EI++ +
Sbjct: 340 RLIARGEVVVIDE---NFGIRVTEIVSLR 365


>gi|121586780|ref|ZP_01676562.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
 gi|153825567|ref|ZP_01978234.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
 gi|229507790|ref|ZP_04397295.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
 gi|229511973|ref|ZP_04401452.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|229513776|ref|ZP_04403238.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
 gi|229519109|ref|ZP_04408552.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
 gi|229522078|ref|ZP_04411495.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
 gi|229524127|ref|ZP_04413532.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
           VL426]
 gi|229528863|ref|ZP_04418253.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
 gi|229607335|ref|YP_002877983.1| flagellar motor switch protein [Vibrio cholerae MJ-1236]
 gi|255745136|ref|ZP_05419085.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
 gi|262153474|ref|ZP_06028604.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
 gi|262191374|ref|ZP_06049564.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
 gi|121548947|gb|EAX58986.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
 gi|149740718|gb|EDM54817.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
 gi|229332637|gb|EEN98123.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
 gi|229337708|gb|EEO02725.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
           VL426]
 gi|229341003|gb|EEO06008.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
 gi|229343798|gb|EEO08773.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
 gi|229348957|gb|EEO13914.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
 gi|229351938|gb|EEO16879.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
 gi|229355295|gb|EEO20216.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
 gi|229369990|gb|ACQ60413.1| flagellar motor switch protein FliN [Vibrio cholerae MJ-1236]
 gi|255736966|gb|EET92362.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
 gi|262030711|gb|EEY49345.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
 gi|262032749|gb|EEY51297.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
 gi|327484653|gb|AEA79060.1| Flagellar motor switch protein FliN [Vibrio cholerae LMA3894-4]
          Length = 136

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
            ++   +   + +   I  +++     E + + +  I +      D IM+IPV + + +G
Sbjct: 10  AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|150395475|ref|YP_001325942.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
 gi|150026990|gb|ABR59107.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
          Length = 215

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 66/93 (70%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           ++         + N DLIM+IP+ +QI+LG+  MQ+S+L+NL++G  I LD+++GE V+I
Sbjct: 122 AAAEPTPGSGMSANLDLIMDIPIDIQIVLGTSRMQVSSLMNLTEGATIALDRKIGEPVEI 181

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +N + I +GEIT++E D T FGV+++EI  ++
Sbjct: 182 MVNGRVIGRGEITVLEGDVTRFGVKLLEIKGSR 214


>gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65]
 gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65]
          Length = 185

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 70/139 (50%), Gaps = 7/139 (5%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKST 66
           +   ++  S   +  L D   ++     E   Q+ +      P+      ++    +  +
Sbjct: 41  VASGVDEASGESEEDLADEWAAAMEEAGEDPNQEGEGGVKPAPMEEFGEGENQPKSDGKS 100

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
              D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+
Sbjct: 101 PELDVILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 160

Query: 127 TIMEEDDTHFGVRVIEILN 145
            ++ +    FG+R+ ++++
Sbjct: 161 VMVND---KFGIRLTDVIS 176


>gi|262404471|ref|ZP_06081026.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
 gi|262349503|gb|EEY98641.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
          Length = 136

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
            ++   +   + S   I  +++     E + + +  I +      D IM+IPV + + +G
Sbjct: 10  AEEWAAALGEDPSAPDIDVDEILAAPLEELKNTAPAISDDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|258621112|ref|ZP_05716146.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
 gi|261209861|ref|ZP_05924162.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
 gi|262166226|ref|ZP_06033963.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
 gi|262170888|ref|ZP_06038566.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
 gi|258586500|gb|EEW11215.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
 gi|260841047|gb|EEX67572.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
 gi|261891964|gb|EEY37950.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
 gi|262025942|gb|EEY44610.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
          Length = 136

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
            ++   +   + +   I  +++     E + + +  I +      D IM+IPV + + +G
Sbjct: 10  AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPISDDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
 gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
          Length = 155

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D+I++IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+
Sbjct: 71  PNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++ E    FG+R+ ++++ 
Sbjct: 131 VVVNE---KFGIRLTDVISP 147


>gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter
           carbinolicus DSM 2380]
 gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter
           carbinolicus DSM 2380]
          Length = 103

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 56/96 (58%), Gaps = 3/96 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           ++  +       +        +++IP+++ + +GS  M I +L+ L +G +I LDK  GE
Sbjct: 3   TDENTPPKTPPTQNEIRELGFLLDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGE 62

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +D+ +N++ IA+GE  ++++    +G+R+ ++++ 
Sbjct: 63  PLDLYVNSRLIARGEAVMVKD---RYGLRLTDVVSP 95


>gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC2047]
          Length = 132

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQI 81
           D    D  ++     +E L Q  +    +       +   E   +   D+I++IPV + +
Sbjct: 3   DENNPDQAIAEEFQQAEQLNQAPNSGVEAAGFEQLQDEGGEVNLSPELDVILDIPVTVSM 62

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            +G+  + I NL+ L+KG VI LD+  GE +D+ +N   IA GE+ ++ E    FG+R+ 
Sbjct: 63  EVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLT 119

Query: 142 EILNA 146
           ++++ 
Sbjct: 120 DVVSP 124


>gi|145298354|ref|YP_001141195.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851126|gb|ABO89447.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 121

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
              +  L ++   +    P+    D   I  +     D I++IPV + + +G   + I N
Sbjct: 3   DAWAAALEEQVIAEAKPAPLEELTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 62

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           L+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 63  LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 112


>gi|262276387|ref|ZP_06054196.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
 gi|262220195|gb|EEY71511.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
          Length = 129

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           ++D   ++    +E+    +      + +  ++  I        D I++IPV + + +G 
Sbjct: 4   VEDDWAAALAEQAEVEGGDDVQTAPLDELVDETPPINADEARKLDAILDIPVTISMEVGR 63

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 64  TNINIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|260772331|ref|ZP_05881247.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
           69.14]
 gi|260611470|gb|EEX36673.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
           69.14]
          Length = 136

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 10/119 (8%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +D N      +  +    +++ + S PI+ D            D IM+IPV + + +G  
Sbjct: 19  EDPNAPDVDVDEILAAPLDELKDTSPPITEDE-------RRKLDTIMDIPVTISMEVGRS 71

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 72  KISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|332140590|ref|YP_004426328.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550612|gb|AEA97330.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 135

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISS-----DSNNILEKSTDNFDLIMNIPVKMQII 82
           D   ++    +E    +   DN    ++      D   I ++     D I++IPV + + 
Sbjct: 7   DDWAAAMAEQAESEADQEAGDNEDVQVAELDELTDDAPITQEEKKKLDTILDIPVTISME 66

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           +G   + I NL+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ +
Sbjct: 67  VGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTD 123

Query: 143 ILN 145
           +++
Sbjct: 124 VIS 126


>gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
 gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
          Length = 370

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 3/111 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              +   I +  V+         S  ++ +S  N DLI+++P+++ ++LG     I +++
Sbjct: 254 EERAVKNIVEKPVEVHGATFEPLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDIL 313

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +LS G +I LDK   E V++ IN +KIA GE+ +++E   +FGVR+  I++
Sbjct: 314 DLSTGSLIELDKLAEEPVEVLINGKKIAYGEVVVVDE---NFGVRITSIVS 361


>gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2143]
          Length = 152

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 68/134 (50%), Gaps = 11/134 (8%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
           D       + D  +   +  + T +    ++ +++ +   P  +           + D+I
Sbjct: 22  DEQNQSGQNNDKGVDPLSARAQTIDGAKAVEMDELTSDVSPSGN--------GAPDLDVI 73

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           M+IPV + + +G+  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ ++ E 
Sbjct: 74  MDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE- 132

Query: 133 DTHFGVRVIEILNA 146
              FG+R+ ++++ 
Sbjct: 133 --KFGIRMTDVISP 144


>gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC
           824]
 gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain
           [Clostridium acetobutylicum ATCC 824]
          Length = 413

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           +  V+           + +  +  N DLI+++P+++ ++LG     I +++NL  G +I 
Sbjct: 305 QPQVEVNRASFQPLEASDVYGAPKNIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIE 364

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           LDK   E V+I +N +K+A GE+ +++E   +FGVR+  I+N++
Sbjct: 365 LDKLAEEPVEILVNGKKVAYGEVVVVDE---NFGVRITSIVNSE 405


>gi|261252330|ref|ZP_05944903.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
 gi|260935721|gb|EEX91710.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
          Length = 136

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
             +   +   + S   I  ++V N   + +   S+ I E      D I++IPV + + +G
Sbjct: 10  ADEWAAALGEDPSAPSIDVDEVMNAQLDELEDTSSPISEDERRKLDTILDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ L++  GES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSQISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
 gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
 gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
 gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
 gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
 gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
          Length = 352

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            +S+P      +      DN DLI+++P+ + ++LG     I ++++ + G VI L+K  
Sbjct: 250 EVSKPAFQTLASSGVSDGDNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLT 309

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            E ++I +N + IA GE+ ++ E   +FGVR+  IL+ +
Sbjct: 310 DEPLEILLNGKLIATGEVVVINE---NFGVRITNILSQK 345


>gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str.
           Eklund 17B]
          Length = 385

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 7   KISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
           K+   K  ++  +  ++   Q           E    +  ++       +       +  
Sbjct: 241 KVVEEKPRVQATNQKVNVHEQVQTTIKAKPIVEAPKVQEPIEVHEAAFETLVPGDTSQVP 300

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N DLI+++P+ + ++LG     I +++NLS G +I LDK   E V+I +N +KIA GE+
Sbjct: 301 KNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEV 360

Query: 127 TIMEEDDTHFGVRVIEILN 145
            +++E   +FGVR+  I++
Sbjct: 361 VVVDE---NFGVRITSIVS 376


>gi|222147562|ref|YP_002548519.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
 gi|221734550|gb|ACM35513.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
          Length = 220

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 66/94 (70%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            +            N DLIM+IP+ +QI+LGS  M +S L+NL +G +I LDK++GE V+
Sbjct: 125 AAPAHQAPGSALDSNLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVE 184

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           I +N ++IA+GEIT++E DDT FGV++IE+++ +
Sbjct: 185 IMVNGRRIARGEITVLENDDTRFGVKLIEVMSTK 218


>gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018]
          Length = 395

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           +  V+           + +  +  N DLI+++P+++ ++LG     I +++NL  G +I 
Sbjct: 287 QPQVEVNRASFQPLEASDVYGAPKNIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIE 346

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           LDK   E V+I +N +K+A GE+ +++E   +FGVR+  I+N++
Sbjct: 347 LDKLAEEPVEILVNGKKVAYGEVVVVDE---NFGVRITSIVNSE 387


>gi|56460300|ref|YP_155581.1| flagellar motor switch protein [Idiomarina loihiensis L2TR]
 gi|56179310|gb|AAV82032.1| Flagellar motor switch [Idiomarina loihiensis L2TR]
          Length = 151

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           ++V        S+   + E+     D I++IPV + + +G   + I NL+ L++G V+ L
Sbjct: 45  DNVQTAELEELSEDKPVTEEEKRKLDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVEL 104

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           ++  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 105 ERVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 142


>gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
           25644]
 gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
           25644]
          Length = 409

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 58/97 (59%), Gaps = 3/97 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            +S+P     +   +   DN DL+M+IP+ + ++LG+    +  +++ + G VI L+K  
Sbjct: 307 EVSQPSFQTLDGHAQVEGDNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLT 366

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            E +DI +N + IA+GE+ ++ +   +FGVR+  IL+
Sbjct: 367 DEPLDILLNGKLIAQGEVVVIND---NFGVRITNILS 400


>gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016]
 gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 396

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILEKSTDNF 69
           +K            P  + + +      E  I K  V+       S D+         N 
Sbjct: 255 VKTENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNI 314

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           DLI+++P+++ ++LG     I +++NL  G ++ LDK   E V+I +N +K+A GE+ ++
Sbjct: 315 DLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVI 374

Query: 130 EEDDTHFGVRVIEILNAQ 147
           +E   +FGVR+  I++++
Sbjct: 375 DE---NFGVRIKSIISSE 389


>gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium carboxidivorans P7]
 gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
           P7]
 gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium carboxidivorans P7]
 gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
           P7]
          Length = 406

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +   N DLI+++P+ + ++LG     I +++NL  G +I LDK   E V+I +N +++A 
Sbjct: 319 EMPKNIDLILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAY 378

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ +++E   +FGVR+  I++++
Sbjct: 379 GEVVVVDE---NFGVRITSIISSE 399


>gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
 gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
          Length = 354

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
            + +  ++    ++++                N  LIM++P+ + + +G    ++ +++N
Sbjct: 239 ESLQSGMESRTANSVTADTGHAVYQASPSINGNLGLIMDVPLNVSVEIGKTRRRLKDVLN 298

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + G V+ LDK+    VDI +N Q IA+GE+ ++++   +FGVR+ EI+NA+
Sbjct: 299 FNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD---NFGVRISEIVNAR 347


>gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
           R551-3]
 gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
           R551-3]
          Length = 111

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           + ++       +        +  N D+I+++PV + + +G   + I NL+ L++G V+ L
Sbjct: 5   DALEPTPAQFGTLQAEEGAGADLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGSVVEL 64

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++  GES+D+ +N   IA GE+ ++ +    FGVR+ ++++ 
Sbjct: 65  ERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVSP 103


>gi|74055042|gb|AAZ95847.1| FliN [Aeromonas hydrophila]
          Length = 130

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
              +  L ++   +    P+    D   I  +     D I++IPV + + +G   + I N
Sbjct: 12  DAWAAALEEQVIAEAKPAPLEELTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 71

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           L+ L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 72  LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121


>gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides]
 gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides]
          Length = 152

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N  L+ NI V++ + +G   M I +L+ LS+G V+ LD+  G+ +D+ +N   IAKG
Sbjct: 67  GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 126

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R  +I+  +
Sbjct: 127 EVVMVGE---RFGIRFGQIIEPE 146


>gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
           sp. MED92]
 gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
           sp. MED92]
          Length = 144

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           +++   +  + + + L+    V   S  +    +     S    D+I++IPV + + +G 
Sbjct: 19  MEEQGDTEESVDPDELLAATGVTGDSVELDELQDEGTPVSDPKLDVILDIPVTLSMEVGQ 78

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + ISNL+ L++G VI LD+  GE +D+ +N   IA GE+ ++ +    +G+R+ ++++
Sbjct: 79  TDIPISNLLQLNQGSVIELDRVAGEPLDVMVNGTLIAHGEVVVVND---RYGIRLTDVIS 135

Query: 146 AQ 147
            Q
Sbjct: 136 PQ 137


>gi|308048760|ref|YP_003912326.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
 gi|307630950|gb|ADN75252.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
          Length = 129

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           L D   ++    +E +    +++    P+  DS           D I++IPV + + +G 
Sbjct: 13  LADDWAAALEEQAETV----ELEQFDAPMGGDSEQ-----QRKLDAILDIPVTISMEVGR 63

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             + I NL+ L++G V+ LD+  GE +D+ +N   +A GE+ ++ +    FG+R+ ++++
Sbjct: 64  SQISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLVAHGEVVVVND---KFGIRLTDVIS 120


>gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
           B316]
 gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
           B316]
          Length = 412

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +N  +I ++P+++ + LG     I+++++ + G +I LDK  GE VD+ +N + +AKGE+
Sbjct: 337 ENIGIIKDVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEV 396

Query: 127 TIMEEDDTHFGVRVIEIL 144
            ++EE    FGVRV EI+
Sbjct: 397 VVIEES---FGVRVTEIV 411


>gi|118589948|ref|ZP_01547352.1| probable flagellar motor switch protein [Stappia aggregata IAM
           12614]
 gi|118437445|gb|EAV44082.1| probable flagellar motor switch protein [Stappia aggregata IAM
           12614]
          Length = 130

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 2/124 (1%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIIL 83
           + +T V           +  D  + ++  + + N+  +   D  N D I+ IPV +Q++L
Sbjct: 1   MSETIVDHIEAEKGPKTRPADAASFAKVETPERNSGSDTIGDDRNLDTILGIPVNIQVVL 60

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           GS  M +SNL+ L +G VI L+ RVGE +DI +N + IA+GE+ ++E+D++ FGV + EI
Sbjct: 61  GSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVVEDDNSRFGVSLTEI 120

Query: 144 LNAQ 147
           ++AQ
Sbjct: 121 ISAQ 124


>gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 126

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
               Q       +     +     +       L+ ++ +++ + LG     +  ++ +  
Sbjct: 16  AQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVELGQSRRSLREILAMGP 75

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           G V+ LDK  GE+VD+ +N Q +A+GE+ ++ E   ++G+R+ E++N +
Sbjct: 76  GSVLELDKHAGEAVDLLVNGQLVARGEVVVIGE---NYGIRITELINPE 121


>gi|27381990|ref|NP_773519.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
 gi|27355160|dbj|BAC52144.1| fliN [Bradyrhizobium japonicum USDA 110]
          Length = 124

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%)

Query: 31  VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQ 89
             S    S    ++ +   +       +    E     N D I+ IPV MQ++LGS  + 
Sbjct: 2   AQSFDYESASASEETETSPLERLAEIAARTAEESGKFANVDAILRIPVTMQVVLGSATIP 61

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++NL+ L +G V+ LD RVGE VD+ +N + +A+GE+ ++EED++ FGV + EI+  
Sbjct: 62  VANLMKLGRGAVVPLDHRVGEPVDVVVNGRIVARGEVVVVEEDNSRFGVSLTEIVGP 118


>gi|260767698|ref|ZP_05876633.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260617207|gb|EEX42391.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315179470|gb|ADT86384.1| flagellar motor switch protein [Vibrio furnissii NCTC 11218]
          Length = 136

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 10/119 (8%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +D +      +  +    +++ + + PIS D            D IM+IPV + + +G  
Sbjct: 19  EDPSAPDIDVDEVLAAPLDELKDTTSPISDDE-------RRKLDTIMDIPVTISMEVGRS 71

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ LD+  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 72  KISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
           BAA-613]
          Length = 368

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +    N  LIM++P+ + + +G    ++ +++N S G V+ LDK+    VDI +N Q IA
Sbjct: 280 QSMNGNLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIA 339

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ ++++   +FGVR+ EI+N +
Sbjct: 340 RGEVVVIDD---NFGVRISEIVNTR 361


>gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF]
 gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens
           QYMF]
          Length = 393

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
           K N +      D P+Q     S  N+         ++       S          +N  L
Sbjct: 263 KSNQQPHLSDHDAPVQQRQQPSLENS--------KINVQPVQFQSFDQQSNRGLPENIAL 314

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I ++P+ + + LG    +IS ++    G +I L+K VGE +DI +N Q +AKGE+ +++E
Sbjct: 315 IQDVPLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDE 374

Query: 132 DDTHFGVRVIEILNA 146
              ++G+R+ +I+  
Sbjct: 375 ---NYGIRITDIVAP 386


>gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555]
 gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555]
          Length = 392

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILEKSTDNF 69
           +K            P  + + +      E  I K  V+       S D+         N 
Sbjct: 251 VKTENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNI 310

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           DLI+++P+++ ++LG     I +++NL  G ++ LDK   E V+I +N +K+A GE+ ++
Sbjct: 311 DLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVI 370

Query: 130 EEDDTHFGVRVIEILNAQ 147
           +E   +FGVR+  I++++
Sbjct: 371 DE---NFGVRIKSIISSE 385


>gi|209695732|ref|YP_002263662.1| flagellar motor switch protein [Aliivibrio salmonicida LFI1238]
 gi|208009685|emb|CAQ79984.1| polar flagellar switch protein FliN [Aliivibrio salmonicida
           LFI1238]
          Length = 127

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E +   +    E      D I++IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 28  EDLEETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGES 87

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 88  LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118


>gi|239997092|ref|ZP_04717616.1| flagellar motor switch protein [Alteromonas macleodii ATCC 27126]
          Length = 135

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
            DV        +D   I ++     D I++IPV + + +G   + I NL+ L++G V+ L
Sbjct: 29  EDVQVAELDELTDDAPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVEL 88

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           D+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 89  DRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 126


>gi|322421723|ref|YP_004200946.1| flagellar motor switch protein FliN [Geobacter sp. M18]
 gi|320128110|gb|ADW15670.1| flagellar motor switch protein FliN [Geobacter sp. M18]
          Length = 101

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 61/97 (62%), Gaps = 4/97 (4%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           +SE ++ D    + +   N D IM+IP+++ + LG   + + +++ L++G V+ L K  G
Sbjct: 1   MSEKLALDEQREVPQ-PKNLDFIMDIPLQLTVELGRTKLLVRDVLQLNQGSVVELTKLAG 59

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           E +D+ +N++ +A+GE  ++ +    FG+R+++I++ 
Sbjct: 60  EPLDVFVNSKLVARGEAVVVND---KFGIRLLDIVSP 93


>gi|59712451|ref|YP_205227.1| flagellar motor switch protein [Vibrio fischeri ES114]
 gi|197335660|ref|YP_002156670.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
 gi|59480552|gb|AAW86339.1| flagellar motor switch component FliN [Vibrio fischeri ES114]
 gi|197317150|gb|ACH66597.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
          Length = 129

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E +   +    E      D I++IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 30  EDLEEKAPEFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGES 89

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 90  LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
           17241]
 gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
           17241]
          Length = 446

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
                   +  +V N   P  +        S  N DL+M + + + + +G    +I +++
Sbjct: 326 QEPQPATQKPINVQNTQFPQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDII 385

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  +G VI L+K+ G  VDI +N + +A+G++ ++++   +FGVR+ EI+  +
Sbjct: 386 DFGQGTVIELNKQAGAPVDIVVNGRLLARGDVVVIDD---NFGVRITEIVGTK 435


>gi|225569964|ref|ZP_03778989.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
           15053]
 gi|225161434|gb|EEG74053.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
           15053]
          Length = 460

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 64/111 (57%), Gaps = 3/111 (2%)

Query: 37  NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
                 +K  V+ +S+P    S    E    N +LIM +P+++ + +G     + +++ L
Sbjct: 348 TQAAGPKKIKVNPVSQPNLEQSAEETELQESNLELIMGVPLEVSVEIGRTKKLVKDVLEL 407

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +KG ++ LDK  GE VD+ +N Q IA+G++ ++++   +FG+R+ EIL  +
Sbjct: 408 NKGSLVVLDKLAGEQVDLFVNGQCIAQGDVVVVDD---NFGIRITEILADE 455


>gi|147674715|ref|YP_001217647.1| flagellar motor switch protein [Vibrio cholerae O395]
 gi|146316598|gb|ABQ21137.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
 gi|227014021|gb|ACP10231.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
          Length = 138

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
            ++   +   + +   I  +++     E + + +  I +      D IM+IPV + + +G
Sbjct: 12  AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 71

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+   ES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 72  RSKISIRNLLQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 128

Query: 145 N 145
           +
Sbjct: 129 S 129


>gi|254506934|ref|ZP_05119073.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
           16]
 gi|323491453|ref|ZP_08096637.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
 gi|323496547|ref|ZP_08101601.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
 gi|219550219|gb|EED27205.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
           16]
 gi|323314322|gb|EGA67402.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
 gi|323318391|gb|EGA71348.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
          Length = 136

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 10/119 (8%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +D +      +  M  Q +++++ S PIS D            D I++IPV + + +G  
Sbjct: 19  EDPSAPEIDVDEVMSAQLDELEDTSSPISDDE-------RRKLDTILDIPVTISMEVGRS 71

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ L++  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 72  QISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|332533118|ref|ZP_08408987.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037400|gb|EGI73854.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 132

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 9/112 (8%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P ++ E  + + D       +S   + +        D I++IPV + + +G   + I NL
Sbjct: 21  PDDSGEAHVAELD------ELSDSKHEMSGDEKRKLDTILDIPVTISMEVGRSKINIRNL 74

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + L++G V+ LD+  GE +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 75  LQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123


>gi|170725981|ref|YP_001760007.1| flagellar motor switch protein [Shewanella woodyi ATCC 51908]
 gi|169811328|gb|ACA85912.1| flagellar motor switch protein FliN [Shewanella woodyi ATCC 51908]
          Length = 129

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           + ++ E+     D IM+IPV + + +G   + I NL+ L++G V+ LD+  GE +D+ +N
Sbjct: 36  AADLSEEDVAKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVN 95

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
              IA GE+ ++ +    FG+R+ ++++
Sbjct: 96  GTLIAHGEVVVVND---KFGIRLTDVIS 120


>gi|241203097|ref|YP_002974193.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856987|gb|ACS54654.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 194

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 1/125 (0%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           ++P    +       S       D  + S         +      NFDLIM+IP+ +QI+
Sbjct: 69  ESPFGGDDFGGDFGGSASSAAGMDFGS-SPSFEESPAPLGSALNSNFDLIMDIPIDVQIM 127

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE
Sbjct: 128 LGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIE 187

Query: 143 ILNAQ 147
           +L+ +
Sbjct: 188 VLSTK 192


>gi|77359749|ref|YP_339324.1| flagellar motor switch protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874660|emb|CAI85881.1| flagellar biosynthesis; component of motor switch and energizing
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 132

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           + +S   + I        D I++IPV + + +G   + I NL+ L++G V+ LD+  GE 
Sbjct: 33  DELSDAKHEISGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEP 92

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 93  LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123


>gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
           5521]
 gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
           5521]
 gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 412

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 30  NVSSPTNNSEMLIQK--NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
             S P        Q+    V+         +         N DLIM++P+ + ++LG   
Sbjct: 289 GYSQPQMYGGGQAQQYVQPVEVHQAAFEPLTPQNSVPPIKNIDLIMDVPLDISVVLGRTK 348

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             I +++NL  G +I LDK   E V+I +N ++IA GE+ +++E   +FGVR+  I++
Sbjct: 349 KSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALGEVVVVDE---NFGVRITNIVS 403


>gi|118581838|ref|YP_903088.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
           2379]
 gi|118504548|gb|ABL01031.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
           2379]
          Length = 99

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
               +N  E    N D I++IP+++ + LG   + + +++ L++G V+ L K  GE +DI
Sbjct: 3   DKPESNETEIDRKNLDFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDI 62

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N++ +A+GE  ++ E    FGVR+++I++ 
Sbjct: 63  FVNSKLVARGEAVVVNE---KFGVRLVDIVSP 91


>gi|262167484|ref|ZP_06035190.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
 gi|262024056|gb|EEY42751.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
          Length = 136

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
            ++   +   + +   I  +++     E + + +  I +      D IM+IPV + + +G
Sbjct: 10  AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 69

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              + I NL+ L++G V+ LD+   ES+D+ +N   IA GE+ ++ +    FG+R+ +++
Sbjct: 70  RSKISIRNLLQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126

Query: 145 N 145
           +
Sbjct: 127 S 127


>gi|206890622|ref|YP_002249867.1| flagellar motor switch protein FliN [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742560|gb|ACI21617.1| flagellar motor switch protein FliN [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 139

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 66/118 (55%), Gaps = 5/118 (4%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
           +++      + +  K +V   S  I   +    +  T + D I++IP+++ +++G   + 
Sbjct: 20  DMAKALEMEKAMKAKEEVQ--SPHIDEFTVTEEKPKTRDIDFILDIPLELVVVIGRTRIL 77

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  L+ L++G V+ LDK  GE +++ +N + + +GE+ ++ E    FG+R+ +I++ Q
Sbjct: 78  VQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNE---KFGIRITDIISPQ 132


>gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
 gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
          Length = 238

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S  +++ + + +     N  ++ ++ + +   +G   + +  +++L+ G V+ LD+  G 
Sbjct: 138 SPKVATPTTSQVPTPRANLRMLYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELDRTAGS 197

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
             D+ +N + +A+GE+ +++E    +G+RV EI+
Sbjct: 198 PADVLVNGRLVARGEVVVVDEV---YGIRVTEIV 228


>gi|153011535|ref|YP_001372749.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
           49188]
 gi|151563423|gb|ABS16920.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
           49188]
          Length = 115

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 44  KNDVDNISEPISSDSNNILEK--STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           + ++D   E +  +     +K  S  N +LIM IPV +Q++LG   M ++NL+ L +G V
Sbjct: 11  QQELDEAIEELREEKPRGTQKGASKPNLELIMGIPVDVQVVLGGTTMPVANLMKLGRGAV 70

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+  
Sbjct: 71  ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115


>gi|119469994|ref|ZP_01612799.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
 gi|119446704|gb|EAW27977.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
          Length = 132

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           + +S + + I  +     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE 
Sbjct: 33  DELSDEKSEITGEEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEP 92

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 93  LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123


>gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative
           Flagelar Motor Switch Protein Flin (Tm0680) From
           Thermotoga Maritima At 1.85 A Resolution
 gi|39654325|pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative
           Flagelar Motor Switch Protein Flin (Tm0680) From
           Thermotoga Maritima At 1.85 A Resolution
          Length = 96

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
                 E  +D  +L+++IP+K+ + LG     +  ++    G +I LDK  GE VDI +
Sbjct: 1   SETRKTEVPSDKLELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILV 60

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           N + IA+GE+ +++E   +FGVR+ EI++ +
Sbjct: 61  NGKLIARGEVVVIDE---NFGVRITEIVSPK 88


>gi|189426341|ref|YP_001953518.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
 gi|189422600|gb|ACD96998.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
          Length = 99

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            E+   N + I++IP+++ + LG   + + +++ L++G V+ L K  GE +DI +N++ +
Sbjct: 10  AEQEKKNLEFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDIFVNSKLV 69

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
           A+GE  ++ E    FGVR+++I++ 
Sbjct: 70  ARGEAVVVNE---KFGVRLVDIVSP 91


>gi|260776476|ref|ZP_05885371.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607699|gb|EEX33964.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 136

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 10/119 (8%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +D +      +  M  Q +++ +   PIS D            D I++IPV + + +G  
Sbjct: 19  EDPDAPEVDVDEVMAAQLDELQDTGSPISEDE-------RRKLDTILDIPVTISMEVGRS 71

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ L++  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 72  QISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127


>gi|190890354|ref|YP_001976896.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
 gi|190695633|gb|ACE89718.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
          Length = 195

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 75/125 (60%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D+P    +                    S    +    +    T NF+LIM+IP+ +QI+
Sbjct: 69  DSPFGGDDFGGDFGAGNASPAAGMNFGDSSSFETSPAPLGSALTSNFELIMDIPIDVQIM 128

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE
Sbjct: 129 LGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIE 188

Query: 143 ILNAQ 147
           +L+ +
Sbjct: 189 VLSTK 193


>gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 195

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/97 (45%), Positives = 70/97 (72%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S    +    +      NFDLIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE
Sbjct: 97  SPSFEASPAPLGSALNSNFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGE 156

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 157 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 193


>gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
           51333]
 gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
           51333]
          Length = 250

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
            ++    ++  D  ++      P   +       +     E   + S    E+  ++  L
Sbjct: 110 SEDWTKVTLVADGTVEGWLAVRPAPAAPKSAPAEEAKTAPEGPITQSTATPEQRAESMKL 169

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++ + +   +G   + + ++++LS G VI LD+  G + D+ +N + IA+GEI +++E
Sbjct: 170 LYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIARGEIVVVDE 229

Query: 132 DDTHFGVRVIEILN 145
           +   +G+R+ EI++
Sbjct: 230 E---YGIRITEIVS 240


>gi|218508216|ref|ZP_03506094.1| flagellar motor switch protein [Rhizobium etli Brasil 5]
          Length = 195

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 75/125 (60%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D+P    +                    S    +    +    T NF+LIM+IP+ +QI+
Sbjct: 69  DSPFGGDDFGGDFGAGNASPAAGMDFGDSSSFETSPAPLGSALTSNFELIMDIPIDVQIM 128

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE
Sbjct: 129 LGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIE 188

Query: 143 ILNAQ 147
           +L+ +
Sbjct: 189 VLSTK 193


>gi|239834453|ref|ZP_04682781.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
           3301]
 gi|239822516|gb|EEQ94085.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
           3301]
          Length = 115

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 71/114 (62%), Gaps = 2/114 (1%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEK--STDNFDLIMNIPVKMQIILGSCCMQISN 92
           +  +E    + ++D   E +  +     +K  S  N +LIM IPV +Q++LG   M ++N
Sbjct: 2   SKETEDKNMQQELDEAIEELREEKPRSAQKGPSKPNLELIMGIPVDVQVVLGGTTMPVAN 61

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           L+ L +G VITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+  
Sbjct: 62  LMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115


>gi|189022343|ref|YP_001932084.1| Flagellar motor switch FliN protein [Brucella abortus S19]
 gi|225628599|ref|ZP_03786633.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
 gi|237816638|ref|ZP_04595630.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
 gi|254691435|ref|ZP_05154689.1| Flagellar motor switch FliN protein [Brucella abortus bv. 6 str.
           870]
 gi|254695266|ref|ZP_05157094.1| Flagellar motor switch FliN protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698365|ref|ZP_05160193.1| Flagellar motor switch FliN protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699434|ref|ZP_05161262.1| Flagellar motor switch FliN protein [Brucella suis bv. 5 str. 513]
 gi|254706319|ref|ZP_05168147.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
           M163/99/10]
 gi|254711389|ref|ZP_05173200.1| Flagellar motor switch FliN protein [Brucella pinnipedialis B2/94]
 gi|254711988|ref|ZP_05173799.1| Flagellar motor switch FliN protein [Brucella ceti M644/93/1]
 gi|254715058|ref|ZP_05176869.1| Flagellar motor switch FliN protein [Brucella ceti M13/05/1]
 gi|254720634|ref|ZP_05182445.1| Flagellar motor switch FliN protein [Brucella sp. 83/13]
 gi|256029981|ref|ZP_05443595.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
           M292/94/1]
 gi|256043046|ref|ZP_05445991.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111968|ref|ZP_05452919.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256621|ref|ZP_05462157.1| Flagellar motor switch FliN protein [Brucella abortus bv. 9 str.
           C68]
 gi|256262890|ref|ZP_05465422.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544316|ref|ZP_05820137.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
 gi|260564278|ref|ZP_05834763.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260568541|ref|ZP_05839010.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
 gi|260757054|ref|ZP_05869402.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
           870]
 gi|260759575|ref|ZP_05871923.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
           292]
 gi|260762819|ref|ZP_05875151.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882864|ref|ZP_05894478.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
           C68]
 gi|261215631|ref|ZP_05929912.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
           Tulya]
 gi|261216765|ref|ZP_05931046.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
 gi|261313766|ref|ZP_05952963.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M163/99/10]
 gi|261318995|ref|ZP_05958192.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
 gi|261319632|ref|ZP_05958829.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
 gi|261749885|ref|ZP_05993594.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
 gi|265985678|ref|ZP_06098413.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
 gi|265987002|ref|ZP_06099559.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M292/94/1]
 gi|265989484|ref|ZP_06102041.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993417|ref|ZP_06105974.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
           Ether]
 gi|294853147|ref|ZP_06793819.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
           07-0026]
 gi|297249978|ref|ZP_06933679.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
           str. B3196]
 gi|306837358|ref|ZP_07470237.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
 gi|306841072|ref|ZP_07473795.1| flagellar motor switch protein FliN [Brucella sp. BO2]
 gi|306846303|ref|ZP_07478864.1| flagellar motor switch protein FliN [Brucella sp. BO1]
 gi|189020917|gb|ACD73638.1| Flagellar motor switch FliN protein [Brucella abortus S19]
 gi|225616445|gb|EEH13493.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
 gi|237787451|gb|EEP61667.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
 gi|260097587|gb|EEW81461.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
 gi|260151921|gb|EEW87014.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155206|gb|EEW90287.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
 gi|260669893|gb|EEX56833.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
           292]
 gi|260673240|gb|EEX60061.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260677162|gb|EEX63983.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
           870]
 gi|260872392|gb|EEX79461.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
           C68]
 gi|260917238|gb|EEX84099.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
           Tulya]
 gi|260921854|gb|EEX88422.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
 gi|261292322|gb|EEX95818.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
 gi|261298218|gb|EEY01715.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
 gi|261302792|gb|EEY06289.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M163/99/10]
 gi|261739638|gb|EEY27564.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
 gi|262764287|gb|EEZ10319.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000153|gb|EEZ12843.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092727|gb|EEZ16936.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264659199|gb|EEZ29460.1| flagellar motor switch protein FliN [Brucella pinnipedialis
           M292/94/1]
 gi|264664270|gb|EEZ34531.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
 gi|294818802|gb|EFG35802.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
           07-0026]
 gi|297173847|gb|EFH33211.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
           str. B3196]
 gi|306273298|gb|EFM55167.1| flagellar motor switch protein FliN [Brucella sp. BO1]
 gi|306288910|gb|EFM60213.1| flagellar motor switch protein FliN [Brucella sp. BO2]
 gi|306407550|gb|EFM63750.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
 gi|326410310|gb|ADZ67374.1| Flagellar motor switch FliN protein [Brucella melitensis M28]
 gi|326553603|gb|ADZ88242.1| Flagellar motor switch FliN protein [Brucella melitensis M5-90]
          Length = 115

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 44  KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           + +++   E +  +     +KS    N DLIM IPV +Q++LG   M +S+L+ L +G V
Sbjct: 11  QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 70

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+  
Sbjct: 71  ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115


>gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
           51599]
 gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
           51599]
          Length = 135

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 18  RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
              +  NP     V S    +   +  +     + P          +   + + I++IPV
Sbjct: 2   SEQNTVNPESGEIVQSADAPASSAV--DPSVTGALPGVMARLGQGTEGGADIERILDIPV 59

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           ++ + +G     I+N++ L+ G V+ LD + G  +D+ IN   IA+GE+ ++ +    FG
Sbjct: 60  QLSVEIGRTRTTINNVLQLAPGSVVELDAQAGAPMDVLINGYLIAQGEVVVVND---RFG 116

Query: 138 VRVIEILNA 146
           +R+ +I+  
Sbjct: 117 IRLTDIVTP 125


>gi|222084856|ref|YP_002543385.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
 gi|221722304|gb|ACM25460.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
          Length = 179

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 1/125 (0%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS-SDSNNILEKSTDNFDLIMNIPVKMQII 82
            P    +        +         +   P + +++       + N DLIM+IP+ +QI+
Sbjct: 53  EPATGLSAFGDEFGGDDAGSAFGAGDFGGPSAFAETAAPGSALSANLDLIMDIPIDVQIV 112

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LGS  MQ+S L+NL++G +I LDKR+GE V+IT+N + I +GEIT++E DDT FG+++IE
Sbjct: 113 LGSSRMQVSGLMNLTEGAIIALDKRIGEPVEITVNGRCIGRGEITVLEHDDTRFGIKLIE 172

Query: 143 ILNAQ 147
           + N +
Sbjct: 173 LSNNK 177


>gi|222053614|ref|YP_002535976.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
 gi|221562903|gb|ACM18875.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
          Length = 100

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +          N D I++IP+++ + LG   + + +++ L++G V+ L K  GE +D+
Sbjct: 4   TGELEEQKNAEMKNLDFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAGEPLDV 63

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N++ +A+GE  ++ +    FG+R+++I++ 
Sbjct: 64  FVNSKLVARGEAVVIND---KFGIRLVDIVSP 92


>gi|94264048|ref|ZP_01287848.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
 gi|94266366|ref|ZP_01290065.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
 gi|93453018|gb|EAT03506.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
 gi|93455559|gb|EAT05746.1| Surface presentation of antigens (SPOA) protein [delta
           proteobacterium MLMS-1]
          Length = 136

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           E ++   +    D + +   +  +      +++      +         ST N D ++++
Sbjct: 4   EEKNQATEEAGDDWSAAL-ADQGKDSPAFEELEASGA--AGGGGAAPSASTQNLDFLLDV 60

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+++ + LG   M I+ L+ L++G V+ LDK  G SV+I +N + + KGE+ ++ E    
Sbjct: 61  PLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEVVVVNE---R 117

Query: 136 FGVRVIEILN 145
           FG+RV EI++
Sbjct: 118 FGIRVTEIIS 127


>gi|254473327|ref|ZP_05086724.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
 gi|211957443|gb|EEA92646.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
          Length = 138

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 60/85 (70%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E    N D ++ IPV MQ++LGS  M +++L+ L +G VI LD RVGE VDI +N + +A
Sbjct: 50  ENVDRNLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVA 109

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GEI ++E+D++ FGV + EI+ A+
Sbjct: 110 RGEIVVVEDDNSRFGVSLTEIVGAK 134


>gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 347

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
           + P   +  +++     NI + +       +  + +  +LI++IP+K++++LG     I 
Sbjct: 229 TEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVVLGRTRRPIK 288

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +++   G +I LD+ V E V++ +N   +AKGEI ++ E   +FG+++ +IL+ +
Sbjct: 289 EILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGE---NFGIKINQILSPK 341


>gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 250

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
           ++  D  ++      P   +       +     E   + S    E+  ++  L+ ++ + 
Sbjct: 117 TLVADGTVEGWLAVRPAPATPKSAPAEEAKAAPEGPITQSTATPEQRAESMKLLYDVEMT 176

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           +   +G   + + ++++LS G VI LD+  G + D+ +N + IA+GEI +++E+   +G+
Sbjct: 177 LTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIARGEIVVVDEE---YGI 233

Query: 139 RVIEILN 145
           R+ EI++
Sbjct: 234 RITEIVS 240


>gi|39995530|ref|NP_951481.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
 gi|39982293|gb|AAR33754.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
 gi|298504530|gb|ADI83253.1| flagellar motor switch protein FliN [Geobacter sulfurreducens
           KN400]
          Length = 101

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            + +     E    N + I++IP+++ + LG   + + +++ L++G V+ L K  GE +D
Sbjct: 4   FTKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLD 63

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + +N++ +A+GE  ++ E    FGVR+++I++ 
Sbjct: 64  VFVNSKLVARGEAVVVNE---KFGVRLVDIVSP 93


>gi|148558477|ref|YP_001257190.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
           25840]
 gi|148369762|gb|ABQ62634.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
           25840]
          Length = 115

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 44  KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           + +++   E +  +     +KS    N DLIM IPV +Q++LG   M +S+L+ L +G V
Sbjct: 11  QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 70

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+  
Sbjct: 71  ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115


>gi|71282178|ref|YP_268252.1| flagellar motor switch protein [Colwellia psychrerythraea 34H]
 gi|71147918|gb|AAZ28391.1| flagellar motor switch protein FliN [Colwellia psychrerythraea 34H]
          Length = 131

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E ++ D   I        D I++IPV + + +G   + I NL+ L++G V+ LD+  GES
Sbjct: 32  EELTPDDAPITGDEKRKLDAILDIPVTISMEVGRSNISIRNLLQLNQGSVVELDRVAGES 91

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 92  LDVLVNGTLIAHGEVVVVND---KFGIRLTDVVS 122


>gi|325291949|ref|YP_004277813.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
 gi|45479284|gb|AAS66686.1| FliN [Agrobacterium sp. H13-3]
 gi|325059802|gb|ADY63493.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
          Length = 179

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 71/99 (71%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
             +  ++     +    +DN DLIM+IP+ +QI+LG+  M +S L++L +G  I LD+++
Sbjct: 79  AATPQVAGIKAPLGSGLSDNMDLIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKI 138

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           GE V+I +N ++IA+GEIT++E+DDT FGV++IE+++ +
Sbjct: 139 GEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIEVMSTR 177


>gi|124516301|gb|EAY57809.1| flagellar motor switch protein FliN [Leptospirillum rubarum]
 gi|206603144|gb|EDZ39624.1| flagellar motor switch protein FliN [Leptospirillum sp. Group II
           '5-way CG']
          Length = 125

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
             +  ++ D ++++P+ + + +G+  M I +L+ L +G V+ LDK  GE ++I IN++ +
Sbjct: 37  TSEPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLV 96

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
           A+GE+ ++ +    +GVR+ +I++ 
Sbjct: 97  ARGEVVMVND---KYGVRLTDIVSP 118


>gi|17989457|ref|NP_542090.1| flagellar motor switch protein FLIN [Brucella melitensis bv. 1 str.
           16M]
 gi|62317076|ref|YP_222929.1| flagellar motor switch protein FliN [Brucella abortus bv. 1 str.
           9-941]
 gi|83269069|ref|YP_418360.1| flagellar motor switch FliN [Brucella melitensis biovar Abortus
           2308]
 gi|161620209|ref|YP_001594095.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
 gi|225685984|ref|YP_002733956.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
           23457]
 gi|254731810|ref|ZP_05190388.1| Flagellar motor switch FliN protein [Brucella abortus bv. 4 str.
           292]
 gi|256014913|ref|YP_003104922.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
 gi|17985336|gb|AAL54354.1| flagellar motor switch protein flin [Brucella melitensis bv. 1 str.
           16M]
 gi|62197269|gb|AAX75568.1| flagellar motor switch protein FliN, hypothetical [Brucella abortus
           bv. 1 str. 9-941]
 gi|82939343|emb|CAJ12288.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Brucella melitensis biovar
           Abortus 2308]
 gi|161337020|gb|ABX63324.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
 gi|225642089|gb|ACO02002.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
           23457]
 gi|255997573|gb|ACU49260.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
          Length = 106

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 44  KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           + +++   E +  +     +KS    N DLIM IPV +Q++LG   M +S+L+ L +G V
Sbjct: 2   QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 61

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+  
Sbjct: 62  ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 106


>gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB
           8052]
          Length = 398

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           +  V+  +                N DLI+++P+ + ++LG     I +++NL  G +I 
Sbjct: 291 QQPVEVHAATFEPLMPQNSVPPIKNIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIE 350

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           LDK   E V+I +N ++IA GE+ +++E   +FG+R+  I+++
Sbjct: 351 LDKLAEEPVEILVNGKQIALGEVVVVDE---NFGIRITNIVSS 390


>gi|256059634|ref|ZP_05449831.1| Flagellar motor switch FliN protein [Brucella neotomae 5K33]
 gi|261323604|ref|ZP_05962801.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
 gi|261299584|gb|EEY03081.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
          Length = 115

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 44  KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           + +++   E +  +     +KS    N DLIM IPV +Q++LG   M +S+L+ L +G V
Sbjct: 11  QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQMVLGGTTMPVSSLMKLGRGAV 70

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+  
Sbjct: 71  ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115


>gi|148266211|ref|YP_001232917.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
 gi|146399711|gb|ABQ28344.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
          Length = 103

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 60/97 (61%), Gaps = 3/97 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           ++E I SD  N       N + I++IP+++ + LG   + + +++ L++G V+ L K  G
Sbjct: 2   VNEKIDSDELNNNSLEVKNLEFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAG 61

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           E +D+ +N++ +A+GE  ++ +    FG+R+++I++ 
Sbjct: 62  EPLDVFVNSKLVARGEAVVIND---KFGIRLVDIVSP 95


>gi|163850081|ref|YP_001638124.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218528684|ref|YP_002419500.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240137214|ref|YP_002961683.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           AM1]
 gi|254559226|ref|YP_003066321.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           DM4]
 gi|163661686|gb|ABY29053.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218520987|gb|ACK81572.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240007180|gb|ACS38406.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           AM1]
 gi|254266504|emb|CAX22268.1| flagellar motor switch protein fliN [Methylobacterium extorquens
           DM4]
          Length = 108

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 57/80 (71%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D I+ IPV MQ++LGS  M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI
Sbjct: 22  RNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEI 81

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            I+EED++ FGV + E++  
Sbjct: 82  VIVEEDNSRFGVSLTEVVGP 101


>gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571]
 gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571]
          Length = 120

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 62/104 (59%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
              D    S+ +  +       +    + +M IPV +Q++LGS  M ++NL+ L +G ++
Sbjct: 11  TAQDEALFSKALKDNGKEETIGTGQGLESVMRIPVLLQVVLGSASMPVANLMKLGRGAIV 70

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            LD RVGE VD+ +N + IA+GE+ ++EED++ FGV + EI+  
Sbjct: 71  PLDHRVGEPVDVVVNGRIIARGEVMVVEEDNSRFGVTLTEIVGP 114


>gi|188579886|ref|YP_001923331.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
 gi|179343384|gb|ACB78796.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
          Length = 108

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 57/80 (71%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N D I+ IPV MQ++LGS  M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI
Sbjct: 22  RNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEI 81

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            I+EED++ FGV + E++  
Sbjct: 82  VIVEEDNSRFGVSLTEVVGP 101


>gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
 gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
          Length = 132

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSC 86
           +T++S+          K +  +  +     +    E S   N + I+ IPV +Q++LGS 
Sbjct: 6   ETDLSNAAAEHASEPFKPEAASFGKLADLAARAAEETSRLTNLEPILRIPVTVQVLLGSA 65

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            M +++L+ L +G VI LD RVGE V++ +N + +A+G + ++E++++ FGV + EI+ 
Sbjct: 66  TMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDENSRFGVSLTEIVG 124


>gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Thermomicrobium
           roseum DSM 5159]
 gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Thermomicrobium
           roseum DSM 5159]
          Length = 128

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
            +  +       D + ++ V++   LGS  M+I +++ L  G V+ LD+  GE V++TIN
Sbjct: 33  RDQPIGNGRQGIDFLRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTIN 92

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              IA+GE+ +++E    F VR+ EI++ +
Sbjct: 93  KTLIARGEVVVVDE---KFAVRITEIVSPE 119


>gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
           10542]
 gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
           10542]
          Length = 247

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +    +   +      DN  L+ ++ + +   +G   + +  ++ L  G VI LD+  G 
Sbjct: 150 AAQAGAAGTSKGASVGDNLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGS 209

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             D+ +N + IA+GE+ +++ED   +G+R+ EI++
Sbjct: 210 PADLMVNGRLIARGEVVVIDED---YGLRITEIVD 241


>gi|23499886|ref|NP_699326.1| flagellar motor switch protein FliN [Brucella suis 1330]
 gi|23463461|gb|AAN33331.1| flagellar motor switch protein FliN, putative [Brucella suis 1330]
          Length = 106

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 44  KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           + +++   E +  +     +KS    N DLIM IPV +Q++LG   M +S+L+ L  G V
Sbjct: 2   QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGCGAV 61

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+  
Sbjct: 62  ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 106


>gi|110632666|ref|YP_672874.1| flagellar motor switch protein FliN [Mesorhizobium sp. BNC1]
 gi|110283650|gb|ABG61709.1| flagellar motor switch protein FliN [Chelativorans sp. BNC1]
          Length = 121

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 71/111 (63%), Gaps = 5/111 (4%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQIILGSCCMQISN 92
           +   + K++   + + I    + + E++  N D      +++IPV++QI+LGS  M +S 
Sbjct: 4   TPSAVHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSE 63

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           L+ L +G  ++LD+R+GE V+I +N + IA+GEITI+E D + FGVR+ EI
Sbjct: 64  LMALQRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114


>gi|209547919|ref|YP_002279836.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533675|gb|ACI53610.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 195

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 70/97 (72%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +    +    +      NF+LIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE
Sbjct: 97  TPAFDASPAPLGSALNSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGE 156

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 157 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 193


>gi|315127311|ref|YP_004069314.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
 gi|315015825|gb|ADT69163.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
          Length = 132

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           + +    + +  +     D I++IPV + + +G   + I NL+ L++G V+ LD+  GE 
Sbjct: 33  DELDDSKHELSGEEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEP 92

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 93  LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123


>gi|197120187|ref|YP_002140614.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
 gi|253702496|ref|YP_003023685.1| flagellar motor switch protein FliN [Geobacter sp. M21]
 gi|197089547|gb|ACH40818.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
 gi|251777346|gb|ACT19927.1| flagellar motor switch protein FliN [Geobacter sp. M21]
          Length = 101

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
               N D IM+IP+++ + LG   + + +++ L++G V+ L K  GE +D+ +N++ +A+
Sbjct: 14  PQPKNLDFIMDIPLQLTVELGRSKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVAR 73

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE  ++ +    FG+R+++I++ 
Sbjct: 74  GEAVVVND---KFGIRLLDIVSP 93


>gi|90406811|ref|ZP_01215003.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
 gi|90312048|gb|EAS40141.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
          Length = 129

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 7/122 (5%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
            +        +  L +  D D+ +    E      +    +ST + D IM+IPV + + +
Sbjct: 2   SSEQDMADEWAAALDESGDTDSSTVNNVELDDFQESGSDGESTVSIDSIMDIPVTISMEV 61

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G   + I NL+ L++G V+ L++  GE +D+ +N   IA GE+ ++ +    FG+R+ ++
Sbjct: 62  GRSRINIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDV 118

Query: 144 LN 145
           ++
Sbjct: 119 IS 120


>gi|159184368|ref|NP_353589.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
           C58]
 gi|3913685|sp|Q57259|FLIN_AGRT5 RecName: Full=Flagellar motor switch protein FliN
 gi|39092|emb|CAA46543.1| FliN homologue [Agrobacterium tumefaciens]
 gi|1480839|gb|AAC45323.1| FliN [Agrobacterium tumefaciens]
 gi|2459704|gb|AAB71780.1| FliN [Agrobacterium tumefaciens]
 gi|159139682|gb|AAK86374.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
           C58]
          Length = 179

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 71/99 (71%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
             +  ++     +    ++N ++IM+IP+ +QI+LG+  M +S L++L +G  I LD+++
Sbjct: 79  AAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKI 138

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           GE V+I +N ++IA+GEIT++E+DDT FGV++IE+L+ +
Sbjct: 139 GEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIEVLSTR 177


>gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
 gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
          Length = 130

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           +  + ++     P +++ ++  +   ++   + ++PV++ + +G   M +   + L  G 
Sbjct: 1   MSHEMELPAFDRPTAANGSHTGQ---NDLGRLSDVPVELAVEIGRTRMTVGETLELRPGS 57

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++ L++  GE VD+ +N   IA GE+ +++E+   FG+R+ ++L A
Sbjct: 58  IVVLNRMAGEPVDLLVNGTPIAHGEVVVIDEE---FGLRITDVLGA 100


>gi|78224291|ref|YP_386038.1| flagellar motor switch FliN [Geobacter metallireducens GS-15]
 gi|78195546|gb|ABB33313.1| Flagellar motor switch FliN [Geobacter metallireducens GS-15]
          Length = 101

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 59/93 (63%), Gaps = 3/93 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           + +++    E  T N + I++IP+++ + LG   + + +++ L++G V+ L K  GE +D
Sbjct: 4   LDNENLKDGELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLD 63

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + +N++ +A+GE  ++ E    FG+R+++I++ 
Sbjct: 64  VFVNSKLVARGEAVVVNE---KFGIRLVDIVSP 93


>gi|51246521|ref|YP_066405.1| flagellar motor switch protein (FliN) [Desulfotalea psychrophila
           LSv54]
 gi|50877558|emb|CAG37398.1| probable flagellar motor switch protein (FliN) [Desulfotalea
           psychrophila LSv54]
          Length = 123

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E    +   +      + D + ++P+++ + +G   + I +L+N+ +G VI L+K  G+ 
Sbjct: 23  ENTEQEHTTLENNEARSLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDP 82

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +D+ +N++ IA+GE  ++ +    FG+R+ ++++A
Sbjct: 83  LDLYVNSRLIARGEAVMIGD---KFGIRLTDVVSA 114


>gi|312884903|ref|ZP_07744593.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367380|gb|EFP94942.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 138

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 67/119 (56%), Gaps = 8/119 (6%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           +D +      +  M  Q +++++ SE      +++ +      D I++IPV + + +G  
Sbjct: 19  EDPDAPEIDVDEVMSAQLDELEDTSE-----QSSLSDDERRKIDSILDIPVTISMEVGRS 73

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + I NL+ L++G V+ L++  GES+D+ +N   IA GE+ ++ +    FG+R+ ++++
Sbjct: 74  QISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 129


>gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
 gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
          Length = 131

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSC 86
           ++N+++    +E    K+D  +  +     +  + E +   N + I+ IPV +Q++LGS 
Sbjct: 6   ESNLNNVAAANEAEPPKSDPASFGKLADLAARAVEETNRLTNLEPILRIPVTVQVLLGSA 65

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            M +++L+ L +G VI LD RVGE V++ +N + +A+G + ++E++++ FGV + EI+ 
Sbjct: 66  TMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDENSRFGVSLTEIVG 124


>gi|325273550|ref|ZP_08139780.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
 gi|324101310|gb|EGB98926.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
          Length = 82

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D+I++IPV + + +GS  + I NL+ L++G VI LD+  GE +D+ +N   IA GE+ ++
Sbjct: 1   DVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVV 60

Query: 130 EEDDTHFGVRVIEILNA 146
            E    FG+R+ ++++ 
Sbjct: 61  NE---KFGIRLTDVISP 74


>gi|162147463|ref|YP_001601924.1| flagellar motor switch protein fliN [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545572|ref|YP_002277801.1| flagellar motor switch protein FliN [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786040|emb|CAP55622.1| putative flagellar motor switch protein fliN [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533249|gb|ACI53186.1| flagellar motor switch protein FliN [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 125

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 6/121 (4%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGS 85
           + + P    E           +EP  S +    ++   +     + + +IPVK+  ++GS
Sbjct: 2   STNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQKNGDGSGQMEAVYDIPVKITAVIGS 61

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             M +S L+ L +G V+ LD+++GE+VDI  NN+ IA+GE+ +++++  H GV + EI++
Sbjct: 62  ATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVVVDDN--HIGVTMTEIIS 119

Query: 146 A 146
           +
Sbjct: 120 S 120


>gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr]
 gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04]
 gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr]
 gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04]
          Length = 113

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 65/105 (61%), Gaps = 4/105 (3%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +K ++  +  P   D+       + NF L+M++ +++ + LG    +I +++ +S+G +I
Sbjct: 11  EKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTII 69

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           TLDK  GE VDI +N + +A+GE+ +++E   +FGVR+ EI+  +
Sbjct: 70  TLDKLAGEPVDILVNGKIVARGEVVVIDE---NFGVRITEIIKTK 111


>gi|296447444|ref|ZP_06889369.1| flagellar motor switch protein FliN [Methylosinus trichosporium
           OB3b]
 gi|296255064|gb|EFH02166.1| flagellar motor switch protein FliN [Methylosinus trichosporium
           OB3b]
          Length = 123

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 63/94 (67%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            S +    ++  +   + I+ IPV MQ+I+GS  M +SNL+ L +G ++ LD+++GE VD
Sbjct: 24  ASEEPRAGMDVDSRKLESILRIPVVMQVIVGSVTMPVSNLMKLGRGAIVPLDQKIGEPVD 83

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + +N + IA+GE+ ++E+D+T FGV + EI+  +
Sbjct: 84  VVVNGRLIARGEVVVVEDDNTRFGVSLTEIIEPR 117


>gi|218679322|ref|ZP_03527219.1| putative flagellar motor switch protein [Rhizobium etli CIAT 894]
          Length = 178

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 70/97 (72%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S    +    +      NF+LIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE
Sbjct: 80  SSSFEASPAPLGSALNSNFELIMDIPIDVQIMLGTNRMQVSGLMNLNEGATIALDKKIGE 139

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 140 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 176


>gi|320354330|ref|YP_004195669.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
           2032]
 gi|320122832|gb|ADW18378.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
           2032]
          Length = 126

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 58/116 (50%), Gaps = 3/116 (2%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
           +V  P  ++ +  ++       E             T   + + ++P+++ + +G   + 
Sbjct: 5   DVLEPQRSNTLNTEETAELLKEEQPQPAGRGDHAPLTRELEFLFDVPLQVSVEVGRARIL 64

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + +L+ + +G V+ LDK  GE +D+ +N + IA+GE   + +    FG+++ E+++
Sbjct: 65  LKDLLQMGEGYVVELDKLAGEPLDLYVNARLIARGEAVKVGD---KFGIKLTEVVS 117


>gi|163844318|ref|YP_001621973.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
 gi|163675041|gb|ABY39151.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
          Length = 106

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 44  KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           + +++   E +  +     +KS    N DLIM IPV +Q++LG   M +S+L+ L  G V
Sbjct: 2   QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAV 61

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ITLDK++G+ VDI +N + IA+GE+ ++E+D   FGV + EI+  
Sbjct: 62  ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSPRFGVSLTEIIGK 106


>gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
 gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
          Length = 113

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
            +K ++  +  P   D+       + NF L+M++ +++ + LG    +I +++ +S+G +
Sbjct: 10  AEKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTI 68

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ITLDK  GE VDI +N + +A+GE+ +++E   +FGVR+ EI+  +
Sbjct: 69  ITLDKLAGEPVDILVNGKIVARGEVVVIDE---NFGVRITEIIKTK 111


>gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
 gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
 gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
 gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
          Length = 113

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 66/106 (62%), Gaps = 4/106 (3%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           ++K ++  +  P   D+       + NF L+M++ +++ + LG    +I +++ +S+G +
Sbjct: 10  VEKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTI 68

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ITLDK  GE VDI +N + +A+GE+ +++E   +FGVR+ EI+  +
Sbjct: 69  ITLDKLAGEPVDILVNGKIVARGEVVVIDE---NFGVRITEIIKTK 111


>gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 250

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           + S    E+  ++  L+ ++ + +   +G   + + ++++LS G VI LD+  G + D+ 
Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +N + IA+GEI +++E+   +G+R+ EI++
Sbjct: 214 VNGRLIARGEIVVVDEE---YGIRITEIVS 240


>gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
           43063]
 gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
           43063]
          Length = 250

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           + S    E+  ++  L+ ++ + +   +G   + + ++++LS G VI LD+  G + D+ 
Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +N + IA+GEI +++E+   +G+R+ EI++
Sbjct: 214 VNGRLIARGEIVVVDEE---YGIRITEIVS 240


>gi|227820848|ref|YP_002824818.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
           NGR234]
 gi|227339847|gb|ACP24065.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
           NGR234]
          Length = 210

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 61/90 (67%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
                     N DLIM+IP+ +QI+LG+  MQ+S L+ L++G  I LD+++GE V+I +N
Sbjct: 120 ETAPGSGMAANMDLIMDIPIDVQIVLGTSRMQVSGLMGLTEGATIALDRKIGEPVEIMVN 179

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + I +GEIT++E D T FGV++IEI  ++
Sbjct: 180 GRVIGRGEITVLEGDVTRFGVKLIEIKGSR 209


>gi|83591881|ref|YP_425633.1| flagellar motor switch protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574795|gb|ABC21346.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
           rubrum ATCC 11170]
          Length = 115

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 62/100 (62%), Gaps = 3/100 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
            D +S+  S        +S  + + + +IPV++  +LG   MQ++ L+ L +G V+ LD+
Sbjct: 16  ADGMSDDFSPPEIPDKPRSAADLEAVYDIPVQVSAVLGKAHMQVNQLLKLGRGAVVELDR 75

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +VGE++DI +NN+ +A+GE+ ++++     GV + EI+ +
Sbjct: 76  KVGEAIDIYVNNRLVARGEVVVVDD---RLGVTMTEIIKS 112


>gi|58038896|ref|YP_190860.1| flagellar motor switch protein [Gluconobacter oxydans 621H]
 gi|58001310|gb|AAW60204.1| Flagellar motor switch protein FliN [Gluconobacter oxydans 621H]
          Length = 105

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 62/103 (60%), Gaps = 2/103 (1%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
            D  ++ +   S      +K+ ++   I +IPV +  +LG   M I+ L+ L +G V+ L
Sbjct: 4   KDDFSVEKEQFSKEEISGDKTPNDLQAIYDIPVTLSAVLGRATMPINQLLKLGRGAVVEL 63

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           D+++G+ +DI +NN+ IA+GE+ +++E  T  GV + EI+ ++
Sbjct: 64  DRKIGDPIDILVNNRLIARGEVVMVDE--TRLGVTMTEIVKSE 104


>gi|2916786|emb|CAA11953.1| flagellar C-ring protein [Sinorhizobium meliloti]
          Length = 198

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           + PI+ ++       T N DLIM+IP+ +QI+LG+  MQ+S L+ L++G  I LD+++GE
Sbjct: 102 AAPIAGETAP-GSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGE 160

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            V+I +N + I +GEIT++E D T FGV+++EI  ++
Sbjct: 161 PVEIMVNGRVIGRGEITVLEGDVTRFGVKLLEIKGSK 197


>gi|217976218|ref|YP_002360365.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
 gi|217501594|gb|ACK49003.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
          Length = 110

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 59/91 (64%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            +        + N + I+ IPV +Q++LGS  M +S+L+ L +G VI LD RVGE VD+ 
Sbjct: 15  GEEPPGRANVSRNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVV 74

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N + IA+GEI ++E+D++ FGV + EI+  
Sbjct: 75  VNGRIIARGEIVVVEDDNSRFGVSLTEIVGP 105


>gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a]
 gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
 gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
 gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1]
          Length = 113

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 4/105 (3%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +K ++  +  P   D+       + NF L+M++ +++ + LG    +I +++ +S+G +I
Sbjct: 11  EKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTII 69

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           TLDK  GE VDI +N + +AKGE+ +++E   +FGVR+ EI+  +
Sbjct: 70  TLDKLAGEPVDILVNGKIVAKGEVVVIDE---NFGVRITEIIKTK 111


>gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 386

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
               +  + N + ++NIP+++ + LG+  M + +++ L  G VI L+K  GE++++ IN+
Sbjct: 295 QPSPQGDSINIENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMIND 354

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + IA+GE+ +++E   +FG+R+ EI++ +
Sbjct: 355 ELIARGEVVVIDE---NFGIRITEIISPR 380


>gi|15964405|ref|NP_384758.1| flagellar motor switch protein [Sinorhizobium meliloti 1021]
 gi|15073582|emb|CAC45224.1| Flagellar motor switch protein [Sinorhizobium meliloti 1021]
          Length = 210

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           + PI  ++       T N DLIM+IP+ +QI+LG+  MQ+S L+ L++G  I LD+++GE
Sbjct: 114 AAPIVGETAP-GSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGE 172

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            V+I +N + I +GEIT++E D T FGV+++EI   +
Sbjct: 173 PVEIMVNGRVIGRGEITVLEGDVTRFGVKLLEIKGTK 209


>gi|302387781|ref|YP_003823603.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1]
 gi|302198409|gb|ADL05980.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium saccharolyticum WM1]
          Length = 456

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +V  I +    +     E+  +N +LIM +P+++ + +G     +  ++  +KG ++ LD
Sbjct: 356 NVKPIPQNSLREGEANYEEQEENRELIMGVPLEVSVEIGRTRKLVKEILEFTKGSLVILD 415

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           K  GE VD+ +N + IAKG++ ++++   +FG+R+ EI
Sbjct: 416 KLAGEQVDLYVNGRCIAKGDVVVVDD---NFGIRITEI 450


>gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
 gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
 gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
 gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
 gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
 gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
 gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
 gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
 gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
 gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1]
 gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
 gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN
 gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi]
 gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi]
 gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
 gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
 gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
 gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
 gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
 gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
 gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
 gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
 gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
 gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1]
 gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
 gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40]
          Length = 113

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 4/105 (3%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +K ++  +  P   D+       + NF L+M++ +++ + LG    +I +++ +S+G +I
Sbjct: 11  EKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTII 69

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           TLDK  GE VDI +N + +AKGE+ +++E   +FGVR+ EI+  +
Sbjct: 70  TLDKLAGEPVDILVNGKIVAKGEVVVIDE---NFGVRITEIIKTK 111


>gi|115522993|ref|YP_779904.1| flagellar motor switch protein [Rhodopseudomonas palustris BisA53]
 gi|115516940|gb|ABJ04924.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
          Length = 116

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 10/120 (8%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           DT V  P  NS  +    DVD   E  +S       +   + + + ++PV++  +LG   
Sbjct: 5   DTKVPLPDLNSGDVPAMTDVDYNDEEHAS-------RVAADLEAVFDVPVQVSAVLGRSK 57

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           M +  L+ L  G V+ LD++VGE++DI +NN+ IA+GE+ ++E+     GV + EI+ A+
Sbjct: 58  MDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLIARGEVVLVED---KLGVTMTEIIAAE 114


>gi|299131951|ref|ZP_07025146.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
 gi|298592088|gb|EFI52288.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
          Length = 119

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
             + + +   + +   S+      +   + + + ++PV++  +LG   M +S+L+ L  G
Sbjct: 13  PDLNETEAPPLDQAAYSEEEERSARIASDLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPG 72

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            V+ LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A+
Sbjct: 73  TVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 117


>gi|203284198|ref|YP_002221938.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|203287737|ref|YP_002222752.1| flagellar motor switch protein [Borrelia recurrentis A1]
 gi|201083641|gb|ACH93232.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|201084957|gb|ACH94531.1| flagellar motor switch protein [Borrelia recurrentis A1]
          Length = 114

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 68/113 (60%), Gaps = 4/113 (3%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
            + ++   +K ++  +  P   DS       + NF L+M++ +++ + LG    +I +++
Sbjct: 4   DDKNDFSEEKPEIKGVKLPDLIDSLPEGVDPS-NFGLLMDVSMQVTVELGRTERKIKDIL 62

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +S+G +ITLDK  GE VDI +N + +AKGE+ +++E   +FGVR+ EI+  +
Sbjct: 63  AMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE---NFGVRITEIIKIK 112


>gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum
           ferrodiazotrophum]
          Length = 125

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D PL +  ++      ++     + +   EP    +     ++  + D ++++P+ + + 
Sbjct: 3   DEPLDEEALAR-AWEEDLAKGAAEEEKAPEP----ALPRTHEAPLSLDYLLDVPLTISVR 57

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           +G   M I +L+ L +G V+ LDK  GE +++ IN+Q +A+G++ ++ +    +G+R+ +
Sbjct: 58  VGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVVLVND---KYGIRLTD 114

Query: 143 ILNA 146
           I++ 
Sbjct: 115 IVSP 118


>gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
 gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
          Length = 116

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
            + E   +        E  S+ + +       + DL+M++ V + + +G   + I +L+ 
Sbjct: 1   MSDEETTEAVAAQPPEELHSTAAPSPSAGGKIDLDLLMDVQVTLSVEIGRTRLPIKDLLA 60

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           L++G +++LD+ V E +D+ +N   IA+GE+    E    FG+R+I++++ 
Sbjct: 61  LNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV---ESAGQFGLRLIDVVSP 108


>gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855]
 gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855]
          Length = 250

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-----FDLIMNIPVKMQI 81
           Q +  S P          ++ D +    ++ S    E+ + +     F L+ ++ +++++
Sbjct: 121 QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFKLLADVDLEVRV 180

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            LG   + +++++ L+ G V+ L+K VGE + +  N + IA+GE  +++E    FGVR+ 
Sbjct: 181 ELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDE---QFGVRIT 237

Query: 142 EILNA 146
            + + 
Sbjct: 238 NLASE 242


>gi|86748400|ref|YP_484896.1| flagellar motor switch protein [Rhodopseudomonas palustris HaA2]
 gi|86571428|gb|ABD05985.1| Flagellar motor switch FliN [Rhodopseudomonas palustris HaA2]
          Length = 116

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D  V  P  N        DV    E  +S       +   + + + ++PV++  +LG   
Sbjct: 5   DGQVPLPDLNGADAPPLADVGYHEEEQTS-------RVAADLEAVFDVPVQVSAVLGRSK 57

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A+
Sbjct: 58  MDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114


>gi|296534812|ref|ZP_06897160.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
 gi|296264860|gb|EFH11137.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
          Length = 110

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P + ++         + + + +IPV++  +LG   MQ+S L+ L +G V+ LD+++GE+V
Sbjct: 15  PEAPEAEPRRTGGVGDLNAVYDIPVQVSAVLGRATMQVSQLLKLGRGAVVELDRKLGEAV 74

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           DI +NN+ +A+GE+ ++ E+    GV + EI+  
Sbjct: 75  DIYVNNRLVARGEVVMVGEN--RLGVTMTEIVKT 106


>gi|119953076|ref|YP_945285.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
 gi|119861847|gb|AAX17615.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
          Length = 114

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 69/113 (61%), Gaps = 4/113 (3%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
            + S++  +K ++  +  P   D+       + NF L+M++ +++ + LG    +I +++
Sbjct: 4   DDKSDIGEEKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQVTVELGRTERKIKDIL 62

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +S+G +ITLDK  GE VDI +N + IAKGE+ +++E   +FGVR+ EI+  +
Sbjct: 63  GMSEGTIITLDKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITEIIKIK 112


>gi|91978306|ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5]
 gi|91684762|gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5]
          Length = 116

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 7/116 (6%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQIS 91
             ++  +   D+++   P+ +D     E+ T     + + + ++PV++  +LG   M + 
Sbjct: 2   GENDGQVPLPDLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVG 61

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A+
Sbjct: 62  ELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114


>gi|319781691|ref|YP_004141167.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167579|gb|ADV11117.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 128

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 1/117 (0%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           + ++  P    +  I++     + E            S+ N  +IMNIPV +QIILGS  
Sbjct: 7   EADLDQPDEQLDRAIEELRG-VLHEEEQRPDAAFRAASSANSSVIMNIPVDIQIILGSTE 65

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           M +S+L+ L KG  + L++R+GE VD+ +N +KIA+GEIT++E D + FG+R+ EI+
Sbjct: 66  MPVSDLMALQKGSTVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122


>gi|148260473|ref|YP_001234600.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
 gi|146402154|gb|ABQ30681.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
          Length = 132

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           T  +   N +  ++    +  +S   + D     ++ + + + + ++PV +  +LG   M
Sbjct: 14  TTPTGEPNGNGQVLSDLPLAPVSRRTAGDGPE-TQRPSRDLEAVYDVPVLVSAVLGRSTM 72

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           Q+S L+ L +G V+ LD++ G+ +DI +NN+ IA+GE+ +++E  T  G+ + EI+ +
Sbjct: 73  QVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIARGEVVMLDE--TKLGITMTEIVKS 128


>gi|114706763|ref|ZP_01439663.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
 gi|114537711|gb|EAU40835.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
          Length = 131

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 64/117 (54%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
           + + P  +      +  +D           +       + DL++++ V MQ++LGS  M 
Sbjct: 3   DPNDPHGSEIEHSGQPYMDEEGGEEDDRRPDFRGADKMDLDLVLDVSVTMQVVLGSARMS 62

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +S L+ L++G ++ LD +VG+ +D+ +N + IA+GEI ++++DD  FGV + E+   
Sbjct: 63  VSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIVVLDQDDQQFGVTLTEVATP 119


>gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
 gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
          Length = 236

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-----FDLIMNIPVKMQI 81
           Q +  S P          ++ D +    ++ S    E+ + +     F L+ ++ +++++
Sbjct: 107 QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFKLLADVDLEVRV 166

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            LG   + +++++ L+ G V+ L+K VGE + +  N + IA+GE  +++E    FGVR+ 
Sbjct: 167 ELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDE---QFGVRIT 223

Query: 142 EILNA 146
            + + 
Sbjct: 224 NLASE 228


>gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
 gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
 gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
 gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
          Length = 98

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N  L+ NI V++ + +G   M I +L+ LS+G V+ LD+  G+ +D+ +N   IAKG
Sbjct: 13  GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R  +I+  +
Sbjct: 73  EVVMVGE---RFGIRFGQIIEPE 92


>gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17029]
          Length = 98

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N  L+ NI V++ + +G   M I +L+ LS+G V+ LD+  G+ +D+ +N   IAKG
Sbjct: 13  GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R  +I+  +
Sbjct: 73  EVVMVGE---RFGIRFGQIIEPE 92


>gi|209884355|ref|YP_002288212.1| flagellar motor switch phosphatase FliY [Oligotropha
           carboxidovorans OM5]
 gi|209872551|gb|ACI92347.1| flagellar motor switch phosphatase FliY [Oligotropha
           carboxidovorans OM5]
          Length = 119

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 67/118 (56%), Gaps = 8/118 (6%)

Query: 35  TNNSEMLIQKNDVDNISEP-----ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
            N+ +  +   D++ I  P       +D      +   + + + ++PV++  +LG   M 
Sbjct: 3   ENDGQDQVPLPDLNAIEAPPLDQAAYADDEERSARIASDLEAVFDVPVQVSAVLGRSKMD 62

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +S+L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A+
Sbjct: 63  VSDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 117


>gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium
           BAC17H8]
          Length = 110

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           + ++ ++   +   + D+      S +N  L+ NI V + + +G   ++I +L+ L++G 
Sbjct: 1   MSEETELAEDAATETMDAETAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGS 60

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           VI LD+  G+ +DI  N   IAKGE+ ++ E    FG+R  EI++ 
Sbjct: 61  VIELDRLAGDPLDILANGTMIAKGEVVMVGE---RFGIRFTEIVDP 103


>gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
           11B]
 gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
           11B]
          Length = 123

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 8/105 (7%)

Query: 47  VDNISEPISS-----DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           V + SEP  S      + +         +L+ N+ + +   LG   M +  L++L+ G V
Sbjct: 15  VGDSSEPAESVSPVNSAASAQTVRASRLELLQNVEMGVTAELGRTRMTVRELLSLAPGMV 74

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + L++  G  +D+ +N   IA+GE+ +++E+   FGVR+ EI+  
Sbjct: 75  VELNRAAGSPIDLYVNGTLIARGEVVVIDEE---FGVRISEIVGP 116


>gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17025]
          Length = 98

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +N  L+ NI V++ + +G   M I +L+ LS+G V+ LD+  G+ +D+ +N   IAKG
Sbjct: 13  GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++ E    FG+R  +I+  +
Sbjct: 73  EVVMVGE---RFGIRFGQIIEPE 92


>gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
 gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
          Length = 250

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            +L+  + +++   LG   + +  L++LS G VI LD+  G   D+ +N + IA+GE+ +
Sbjct: 168 LELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVV 227

Query: 129 MEEDDTHFGVRVIEILNA 146
           ++E   +FG+RV EI+  
Sbjct: 228 IDE---NFGIRVTEIIKP 242


>gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
          Length = 110

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                K+  + + + ++PV +  +LGS  M I +L+ L+ G V+ LD++VGE++D+ +NN
Sbjct: 25  APTTPKTAADLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNN 84

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + +A+GE+ ++E+     GV + EI+  +
Sbjct: 85  RLVARGEVVLVED---RLGVTMTEIVKGE 110


>gi|326403666|ref|YP_004283748.1| flagellar motor switch protein FliN [Acidiphilium multivorum
           AIU301]
 gi|325050528|dbj|BAJ80866.1| flagellar motor switch protein FliN [Acidiphilium multivorum
           AIU301]
          Length = 106

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            ++      ++ + + + + ++PV +  +LG   MQ+S L+ L +G V+ LD++ G+ +D
Sbjct: 12  RTAGDGPETQRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPID 71

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I +NN+ IA+GE+ +++E  T  G+ + EI+ +
Sbjct: 72  IFVNNRLIARGEVVMLDE--TKLGITMTEIVKS 102


>gi|307311547|ref|ZP_07591188.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
 gi|307318902|ref|ZP_07598333.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
 gi|17380371|sp|O54245|FLIN_RHIME RecName: Full=Flagellar motor switch protein FliN
 gi|306895316|gb|EFN26071.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
 gi|306899564|gb|EFN30193.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
          Length = 198

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           + PI  ++       T N DLIM+IP+ +QI+LG+  MQ+S L+ L++G  I LD+++GE
Sbjct: 102 AAPIVGETAP-GSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGE 160

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            V+I +N + I +GEIT++E D T FGV+++EI   +
Sbjct: 161 PVEIMVNGRVIGRGEITVLEGDVTRFGVKLLEIKGTK 197


>gi|23015636|ref|ZP_00055406.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 108

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           ND     E         + +S  + + + +IPV++  +LG   MQ++ L+ L +G V+ L
Sbjct: 7   NDFKPDGEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVEL 66

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D++VGE++DI +NN+ +A+GE+ ++E+     GV + EI+  
Sbjct: 67  DRKVGEAIDIYVNNRLVARGEVVVVED---RLGVTMTEIIKT 105


>gi|187918151|ref|YP_001883714.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
 gi|119860999|gb|AAX16794.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
          Length = 114

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 68/113 (60%), Gaps = 4/113 (3%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
            + +++  +K ++  +  P   D+       + N  L+M++ +++ + LG    +I +++
Sbjct: 4   DDKNDVGEEKPEIKGVKLPDLIDTLPEGVDPS-NLGLLMDVSMQVTVELGRTERKIKDIL 62

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +S+G +ITLDK  GE VDI +N + +AKGE+ +++E   +FGVR+ EI+  +
Sbjct: 63  GMSEGTIITLDKLAGEPVDILVNGKVVAKGEVVVIDE---NFGVRITEIIKIK 112


>gi|144233|gb|AAA23038.1| putative [Caulobacter crescentus CB15]
          Length = 101

 Score =  103 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            S     + +K+  +   + ++PV +  +LG   M ++ L+ L +G ++ LD++VGE++D
Sbjct: 8   ASEAPIELSDKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAID 67

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I +NN+ +A+GE+ +++E     GV + EI+ 
Sbjct: 68  IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 96


>gi|148253397|ref|YP_001237982.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
 gi|146405570|gb|ABQ34076.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
          Length = 115

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
             +   D   +S+ +  +      +   + + + ++PV++  +LG   M +  L+ L  G
Sbjct: 9   PDLNSADAPPLSDDVGYNEEEHASRIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPG 68

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            V+ LD++VGE++DI +NN+ +A+GE+ ++E+     GV + EI+ +
Sbjct: 69  TVLELDRKVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKS 112


>gi|315497631|ref|YP_004086435.1| flagellar motor switch protein flin [Asticcacaulis excentricus CB
           48]
 gi|315415643|gb|ADU12284.1| flagellar motor switch protein FliN [Asticcacaulis excentricus CB
           48]
          Length = 110

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 59/96 (61%), Gaps = 3/96 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           + +    ++   K+  +   + ++PV +  +LG   M +S L+ L +G V+ LD++VGE+
Sbjct: 14  QAMVPGGDDEGTKAAADLAPVFDVPVNISAVLGKAYMSVSQLLKLGQGSVLELDRKVGEA 73

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +DI +NN+ +A+GE+ +++E     GV + EI+ ++
Sbjct: 74  IDIYVNNRLVARGEVVVVDE---RLGVTMTEIIKSE 106


>gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
 gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
          Length = 112

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           I  ++++  + P   D      +   + + + ++PV++  +LGS  M +S+L+ L+ G V
Sbjct: 9   IPLDELEVPAAPSEEDGATGATQGAGDLEAVFDVPVRISAVLGSSKMHVSDLLKLASGTV 68

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + LD++VGE++DI +N++ +A+GE+ ++E+     GV + EI+  
Sbjct: 69  LELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIKT 110


>gi|16125160|ref|NP_419724.1| flagellar motor switch protein [Caulobacter crescentus CB15]
 gi|221233890|ref|YP_002516326.1| flagellar motor switch protein [Caulobacter crescentus NA1000]
 gi|462113|sp|Q03593|FLIN_CAUCR RecName: Full=Flagellar motor switch protein FliN
 gi|144250|gb|AAA66328.1| flagellar switch protein [Caulobacter crescentus CB15]
 gi|13422174|gb|AAK22892.1| flagellar motor switch protein FliN [Caulobacter crescentus CB15]
 gi|220963062|gb|ACL94418.1| flagellar motor switch protein FliN [Caulobacter crescentus NA1000]
          Length = 110

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            S     + +K+  +   + ++PV +  +LG   M ++ L+ L +G ++ LD++VGE++D
Sbjct: 17  ASEAPIELSDKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAID 76

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I +NN+ +A+GE+ +++E     GV + EI+ 
Sbjct: 77  IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 105


>gi|116626505|ref|YP_828661.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229667|gb|ABJ88376.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 282

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 8   ISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67
           +S+ +  L    +    PL    +S   + +    +    D   EP +   N++      
Sbjct: 147 LSFGETTLVPLWIGFSAPL----ISVICSPAAGQPEAAPEDAGGEPHTVKRNDM----PP 198

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             +L++++ + + I  G   + + +++ L+ G ++ L++ V E V++ +N+  IA+GE+ 
Sbjct: 199 TMELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELNRGVNEPVEVLVNHCLIARGEVV 258

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++E    ++GVR+ +I+N Q
Sbjct: 259 VVE---GNYGVRIQQIVNRQ 275


>gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
 gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
          Length = 293

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
             N +L+ ++ +++ + LG   + +++++ L+ G +I L+K VGE ++I  N + IA+GE
Sbjct: 207 KGNLELLADVELEIVVELGRRRLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGE 266

Query: 126 ITIMEEDDTHFGVRVIEILN 145
             +++E    FGVR+  ++ 
Sbjct: 267 AVVIDE---QFGVRITSLVT 283


>gi|90422463|ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18]
 gi|90104477|gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18]
          Length = 116

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 10/120 (8%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D+ V  P  NS       DV    +   S       +   + + + ++PV++  +LG   
Sbjct: 5   DSQVPLPDLNSADAPPLGDVGYSDDEQVS-------RIAADLEAVFDVPVQVSAVLGRSK 57

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           M +  L+ L  G V+ LD++VGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A+
Sbjct: 58  MDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114


>gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter
           desulfuricans SSM1]
 gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter
           desulfuricans SSM1]
          Length = 292

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
                + +DV +          N    S  N DL++++ + + + +GS  M + +++ L 
Sbjct: 178 ETSSEKTDDVPDFVPFEEGFEQNSSYDSGGNIDLLLDVEIPVSVKIGSTKMYLKDILELG 237

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            G +I L++   E V++ +NN+ IA+GE+ +++    +FG+R+ EI++ 
Sbjct: 238 PGKIIELEEYADEPVELLVNNKVIARGEVVVVD---GYFGLRIQEIVSK 283


>gi|295690737|ref|YP_003594430.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
 gi|295432640|gb|ADG11812.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
          Length = 110

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            S     I +K+  +   + ++PV +  +LG   M ++ L+ L +G ++ LD++VGE++D
Sbjct: 17  ASEMPVEIADKTASDLAPVFDVPVNISAVLGRAHMSVAQLLQLGQGSILELDRKVGEAID 76

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I +NN+ +A+GE+ +++E     GV + EI+ 
Sbjct: 77  IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 105


>gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 416

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 4/114 (3%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISN 92
           P    +M  Q++     ++  S DS  +   +  +N DLI ++ +++ + LG     I+ 
Sbjct: 299 PMQYEQMPSQQSVRVQQAQFSSFDSLAMSNIQVPENMDLIKDVMLQITVELGKTVKPINE 358

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +++   G V+ LDK VGES+DI  N +KIA GE+ +++E   ++G+R+ +I+  
Sbjct: 359 ILDFKPGSVLELDKVVGESLDILANGKKIATGEVVVIDE---NYGIRITDIVKP 409


>gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
 gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
          Length = 84

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           M++ + + + LG   + I  ++ L +G +I L K  GE VD+ +N + IAKGE+ +++E 
Sbjct: 1   MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEC 60

Query: 133 DTHFGVRVIEILNA 146
              FGVRV +I+++
Sbjct: 61  ---FGVRVTDIVDS 71


>gi|75674794|ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255]
 gi|74419664|gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 116

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 10/120 (8%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           DT V  P  N+      +DV           +  + +   + + + ++PV++  +LG   
Sbjct: 5   DTQVPLPDLNAADAPSIDDVG-------YSEDEQVSRVASDLEAVFDVPVQVSAVLGRSR 57

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A+
Sbjct: 58  MDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114


>gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
          Length = 112

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           + ++ +    + P       +      + DL+M++PV + + +G   M I  L+ L+ G 
Sbjct: 1   MAEEQEDMTTATPPELSEGAVEGTGEIDLDLLMDVPVYLTVEVGRRRMTIKELLALASGS 60

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           V+T D+ V E +D+ +N   +A+GE+      +  FG+R++++++ +
Sbjct: 61  VVTFDRSVTEPMDLMVNGTLVARGEVV---SAEGQFGLRLVDVVSPK 104


>gi|288960027|ref|YP_003450367.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
 gi|288912335|dbj|BAI73823.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
          Length = 105

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                    + + + +IPV++  +LG   MQ++ L+ L +G V+ LD++VGE++DI +NN
Sbjct: 18  EYTSPGIAKDLEAVYDIPVQISAVLGKSTMQVAQLLKLGRGAVVELDRKVGEAIDIYVNN 77

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + +A+GE+ ++E+     G+ + EI+ +
Sbjct: 78  RLVARGEVVVVED---RLGITMTEIIKS 102


>gi|146342732|ref|YP_001207780.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
 gi|146195538|emb|CAL79565.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
          Length = 115

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
             +   D   I+            +   + + + ++PV++  +LG   M +  L+ L  G
Sbjct: 9   PDLNSADAPPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPG 68

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            V+ LD++VGE++DI +NN+ +A+GE+ ++E+     GV + EI+ +
Sbjct: 69  TVLELDRKVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKS 112


>gi|85713558|ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85699462|gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 116

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 10/120 (8%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           DT V  P  N+      +DV           +  + +   + + + ++PV++  +LG   
Sbjct: 5   DTQVPLPDLNAADAPTIDDVG-------YSEDEQVSRVASDLEAVFDVPVQVSAVLGRSR 57

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A+
Sbjct: 58  MDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114


>gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
          Length = 164

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
             +   +   ++        T   D +M+IP+ +++++G   +QI  L+NL  G V+ LD
Sbjct: 51  PAEAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELD 110

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +   E VDI +N + IAKGE+ ++ E    FGVR+ EI + +
Sbjct: 111 RETTEPVDIKVNGKLIAKGELVVVGE---KFGVRITEIYSEE 149


>gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
 gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
          Length = 115

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P S        K+  + + + ++PV +  +LGS  M I +L+ L  G V+ LD++VGE++
Sbjct: 23  PGSVRDAPTSPKNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAI 82

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           DI +NN+ +A+GE+ +++E     GV + EI+ 
Sbjct: 83  DIFVNNRLVARGEVVLVDE---RLGVTMTEIIK 112


>gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073]
 gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC
           39073]
          Length = 395

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 56/83 (67%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
            S+ N DLI+++P+ +++ILG+   +I ++++L+ G ++ LD+ V E V IT+N   IA+
Sbjct: 307 ASSRNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQ 366

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ I+ E   +FGVR+  IL  
Sbjct: 367 GEVVIVNE---NFGVRITHILEP 386


>gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
           3776]
 gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
           3776]
          Length = 189

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 5/134 (3%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
           + +L      +   L +     P N   +   +       E   +             D 
Sbjct: 58  EQSLRQAEQQLAAALSEELP--PRNMRGLPPGEAPARFEFEEFGTPFPTRAAAPVFPLDA 115

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++ + ++I LG   + I  ++ L +G V+ LDK  G+ VDI +N + +A+GE+ ++ +
Sbjct: 116 LQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVLND 175

Query: 132 DDTHFGVRVIEILN 145
              +F VR+ EIL 
Sbjct: 176 ---NFCVRIAEILT 186


>gi|83309599|ref|YP_419863.1| flagellar motor switch protein [Magnetospirillum magneticum AMB-1]
 gi|82944440|dbj|BAE49304.1| Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magneticum AMB-1]
          Length = 108

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           ND     E         + +S  + + + +IPV++  +LG   MQ++ L+ L +G V+ L
Sbjct: 7   NDFKPEVEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVEL 66

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D++VGE++DI +NN+ +A+GE+ ++E+     GV + EI+  
Sbjct: 67  DRKVGEAIDIYVNNRLVARGEVVVVED---RLGVTMTEIIKT 105


>gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium
           SS3/4]
          Length = 445

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           +   + P    S +   + + N +++M +P+++ + +G     + +++  ++G ++ LDK
Sbjct: 342 IRPANAPGLESSGSENGEESANQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLVVLDK 401

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             GE  D+ +N Q +A+G+I ++E+   +FG+R+ +I+ 
Sbjct: 402 MAGEQADLYVNGQCVARGDIVVVED---NFGIRITDIVT 437


>gi|56384263|gb|AAV85781.1| FliN [Azospirillum brasilense]
          Length = 109

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
               + + + +IPV++  +LG   MQ+S L+ L +G V+ LD++VGE++DI +NN+ +A+
Sbjct: 27  GPAKDLEAVYDIPVQISAVLGKSTMQVSQLLKLGRGAVVELDRKVGEAIDIYVNNRLVAR 86

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ ++E+     G+ + EI+ +
Sbjct: 87  GEVVVVED---RLGITMTEIIKS 106


>gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
 gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
 gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
 gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
          Length = 115

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P S        K+  + + + ++PV +  +LGS  M I +L+ L  G V+ LD++VGE++
Sbjct: 23  PGSVRDAPTSPKNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAI 82

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           DI +NN+ +A+GE+ ++EE     GV + EI+ 
Sbjct: 83  DIFVNNRLVARGEVVLVEE---RLGVTMTEIIK 112


>gi|92116306|ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14]
 gi|91799200|gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14]
          Length = 116

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           DT V  P  N+      +D+           +  + +   + + + ++PV++  +LG   
Sbjct: 5   DTQVPLPDLNAADTPAIDDIG-------YSEDEQVSRIASDLEAVFDVPVQVSAVLGRSK 57

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A+
Sbjct: 58  MDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114


>gi|27382113|ref|NP_773642.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
 gi|27355283|dbj|BAC52267.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
          Length = 116

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 10/120 (8%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D  V  P  N  M     DV         + +    ++  + + + ++PV++  +LG   
Sbjct: 5   DGQVPLPDLNGPMPPTGTDVG-------YNEDEYAARAAADLEAVFDVPVQVSAVLGRSK 57

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+  +
Sbjct: 58  MDVGELLKLGPGTVLELDRRVGEAIDIYVNNKLVARGEVVLVED---KLGVTMTEIIKTE 114


>gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 109

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           +   +KS  +   + ++PV +  +LG   M ++ L+ L++G V+ LD++VGE++DI +NN
Sbjct: 20  DEAGDKSAADLATVFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNN 79

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + +A+GE+ ++E+     GV + EI+  +
Sbjct: 80  RLVARGEVVVVED---RLGVTMTEIIKTE 105


>gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
           baltica SH 1]
 gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
           baltica SH 1]
 gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula
           baltica WH47]
          Length = 141

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 5/119 (4%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSD--SNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           N +S +  +    +++   ++  P +    S N L ++  + DL+  + + ++I LG   
Sbjct: 24  NEASQSLAAATGDKESTERDVPRPFALGDLSPNSLGEAAHDVDLLGEVEMDLRIELGRTQ 83

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           M++  ++ L  G V+ LDK  G+ VDI +N + IA+GE+ +M +   +F VRV E++ A
Sbjct: 84  MRLEEVLRLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVMND---NFCVRVTELVGA 139


>gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
           A6]
 gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
           A6]
          Length = 238

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
                LI N+ + + + +G   M + + + L  G VI LD+  G   D+ +N + IA GE
Sbjct: 156 PARLSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGE 215

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           + ++++D   + VR+  IL+ 
Sbjct: 216 VVVVDQD---YAVRITRILDT 233


>gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
           1]
 gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
           1]
          Length = 141

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 3/90 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           + N   +S  N + I++IP+++ + LG     I ++V+L+ G ++  D+ VGE VDIT+N
Sbjct: 48  AANAGMQSHPNLERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLN 107

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + IA+GE+ ++ E   HFGVR+ +I+  Q
Sbjct: 108 GKLIARGEVVVVGE---HFGVRISQIITPQ 134


>gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
 gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
          Length = 171

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 74/133 (55%), Gaps = 5/133 (3%)

Query: 19  SMHIDNPLQD-TNVSSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIM 73
           +  +D P ++ T  +SP         + D D +++ ++    + S + +    D  + + 
Sbjct: 2   TSELDGPAEEVTQTTSPEIEGAPATPRYDFDKVADALADVSPAASRSPVSPKRDATNSLW 61

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IP+ + ++LG   + +S+L+NLS GD ++LD+R+G+ V+I  N   IA G++  ++E  
Sbjct: 62  SIPLDVDVVLGHARLPVSDLMNLSIGDTLSLDRRIGDPVEIVANGTTIAWGQLCAVDESG 121

Query: 134 THFGVRVIEILNA 146
             FGVR+ ++  A
Sbjct: 122 ERFGVRLTKLSGA 134


>gi|84514808|ref|ZP_01002171.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
           SKA53]
 gi|84510967|gb|EAQ07421.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
           SKA53]
          Length = 102

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
            + + +   +     TD    + NI V+M + +G   + IS L+ L++G V+ LD+  GE
Sbjct: 3   EQKMENQDKDPKGPETDKLRALENIEVEMSVEVGRTEISISELLRLNEGSVVELDRLAGE 62

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +DI +N   IAKGEI ++ E    FG+R  +I++ +
Sbjct: 63  PLDILVNGTLIAKGEIVMVGE---RFGIRFSDIVDPE 96


>gi|39934342|ref|NP_946618.1| flagellar motor switch protein [Rhodopseudomonas palustris CGA009]
 gi|192289870|ref|YP_001990475.1| flagellar motor switch protein [Rhodopseudomonas palustris TIE-1]
 gi|316935485|ref|YP_004110467.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           DX-1]
 gi|39648190|emb|CAE26710.1| putative flagellar motor switch protein [Rhodopseudomonas palustris
           CGA009]
 gi|192283619|gb|ACE99999.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           TIE-1]
 gi|315603199|gb|ADU45734.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           DX-1]
          Length = 115

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D  V  P  N        DV           +  + +   + + + ++PV++  +LG   
Sbjct: 5   DGQVPLPDLNGADAPPLADVG-------YQEDEQISRVAADLEAVFDVPVQVSAVLGRSK 57

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           M +  L+ L  G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+     GV + EI+ A
Sbjct: 58  MDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKA 113


>gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
 gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
          Length = 111

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
            DV +  +   +D  +    +  NFDL+  + +++ + +GS  M ++ L+ L +G VI L
Sbjct: 2   TDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIEL 61

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           D+   + +DI  N   IAKGEI  ++     +G++V E++  
Sbjct: 62  DRAATDLLDIYANGTLIAKGEIVSVD---GRYGIQVAEVVAP 100


>gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
 gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
          Length = 116

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                KS  + + + ++PV +  +LG+  M + +L+ L  G V+ LD++VGE++DI +NN
Sbjct: 30  GPPAPKSAADLEQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNN 89

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + +A+GE+ ++EE     GV + EI+ +
Sbjct: 90  RLVARGEVVLVEE---RLGVTMTEIVKS 114


>gi|144897407|emb|CAM74271.1| flagellar motor switch protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 107

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
             +S  + + + +IPV++  +LG   MQ++ L+ L +G V+ LD++VGE++DI +NN+ +
Sbjct: 23  GPRSARDLEAVYDIPVQVSAVLGKANMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLV 82

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
           A+GE+ ++E+     GV + EI+  
Sbjct: 83  ARGEVVVVED---RLGVTMTEIIKT 104


>gi|209963529|ref|YP_002296444.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|209956995|gb|ACI97631.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 119

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +  D    I N+PV +Q++LG   M +S L+ L +G V+ L+++VGE+VD+ +N++ IA+
Sbjct: 34  QDRDELRAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIAR 93

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           GE+ I+++     GV + EI+ A+
Sbjct: 94  GEVVIVDD--GRLGVTMTEIVKAE 115


>gi|317051534|ref|YP_004112650.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
 gi|316946618|gb|ADU66094.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
          Length = 330

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 57/87 (65%), Gaps = 3/87 (3%)

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           + ++   N +++++I + + I +GS  + + +L+ L  G ++ LDK+ G+ V++ +N + 
Sbjct: 239 LNKEQMRNIEMLLDIDLAVIIRIGSTKIYLKDLLKLGSGSIVELDKKAGDPVELVVNKKV 298

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
           IA+GE+ +++    +FG+R+ EIL+ +
Sbjct: 299 IARGEVVVID---ANFGLRINEILSKR 322


>gi|167644980|ref|YP_001682643.1| flagellar motor switch protein [Caulobacter sp. K31]
 gi|167347410|gb|ABZ70145.1| flagellar motor switch protein FliN [Caulobacter sp. K31]
          Length = 111

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            S     + +K   +   + ++PV +  +LG   M ++ L+ LS G ++ LD++VGE++D
Sbjct: 17  ASEMPIELSDKIASDLAPVFDVPVNISAVLGRAHMSVAQLLQLSAGSILELDRKVGEAID 76

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I +NN+ +A+GE+ +++E     GV + EI+ 
Sbjct: 77  IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 105


>gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
 gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
          Length = 212

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           +           +L+ ++ + ++I LG   M + +++ L +G V+TLDK  G+ VDI +N
Sbjct: 123 AAAPPSGEKATLELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVN 182

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + IA+GE+ ++ +   +F VRV E+L+
Sbjct: 183 GRLIARGEVLVLND---NFCVRVAELLS 207


>gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
 gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
          Length = 125

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 62/113 (54%), Gaps = 7/113 (6%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           +   + L ++ + +        DS ++ EK        + IP+++++++G   +++  L+
Sbjct: 13  SMWEQALKEQQEAEGRHGEGQGDSQDLSEKVRR----FLEIPLELEVVIGRTTLKLGELL 68

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +L  G V+ LD  V   VDI +N + +AKGEI ++E+    FGVR+ +I+  +
Sbjct: 69  HLGPGSVVELDNHVESPVDILVNGKLVAKGEIVVVED---KFGVRITDIIARE 118


>gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
           2060]
 gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
           2060]
          Length = 116

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                KS  + + + ++PV +  +LG+  M I +L+ L  G V+ LD++VGE++DI +NN
Sbjct: 30  GPPSPKSAADLEQVFDVPVVVSAVLGASRMPIGDLLRLGPGTVLELDRKVGEAIDIYVNN 89

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + +A+GE+ ++EE     GV + EI+ +
Sbjct: 90  RLVARGEVVLVEE---RLGVTMTEIVKS 114


>gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
           43160]
 gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
           43160]
          Length = 249

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
                   + DL+ ++ +++ + +G   M +  L++L  G+V+ LD+      D+ +N  
Sbjct: 155 PQARTQRGSLDLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGT 214

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILN 145
            IA+GE+ +++ED   FG+R+ EI+ 
Sbjct: 215 LIARGEVVVVDED---FGLRISEIVT 237


>gi|91200231|emb|CAJ73275.1| strong similar to flagellar motor switch protein FliN [Candidatus
           Kuenenia stuttgartiensis]
          Length = 120

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P   DS    E    N DLI+++ V + + LG   M I +++ LS+G ++ L+K  G  V
Sbjct: 23  PEEMDSQKGGEG-MPNLDLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPV 81

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++ +  + +A+GE+ ++EE    FG+++  I   Q
Sbjct: 82  ELLVRGKLLARGEVVVVEE---RFGLKITAICGPQ 113


>gi|32490801|ref|NP_871055.1| hypothetical protein WGLp052 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166007|dbj|BAC24198.1| fliN [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 135

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 76/122 (62%), Gaps = 5/122 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           +++ +V    N+ E+   K + + I E  SS   N  +K +++ +LI++IP+KM I LG 
Sbjct: 11  IKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKN--KKLSEDINLILDIPIKMTIELGR 68

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             M I +L+ L +  ++TLD  +GE +DI IN+  +A+GE+ +M+E    +G+++++I+ 
Sbjct: 69  TKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKE---RYGIKILDIIT 125

Query: 146 AQ 147
            +
Sbjct: 126 PE 127


>gi|255022052|ref|ZP_05294058.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
 gi|254968538|gb|EET26094.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
           51756]
          Length = 120

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
              +  +L   + + DL++N+P+++ + LG   M   N++ LS+G VI L++ VGE + I
Sbjct: 21  DETNEKLLTPGSPSVDLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPLTI 80

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            IN +  A GE  ++ ++   FGVR+  ++N +
Sbjct: 81  YINGEIFAYGEAVLVNQE--RFGVRLTALVNKE 111


>gi|254461964|ref|ZP_05075380.1| flagellar motor switch protein FliN [Rhodobacterales bacterium
           HTCC2083]
 gi|206678553|gb|EDZ43040.1| flagellar motor switch protein FliN [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 99

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           +        D    + NI V+M I +G   + I+NL+ L++G V+ LD+  GE +DI +N
Sbjct: 7   ATPAQGSEKDKLRALENIEVQMSIEVGRTEITIANLLRLNEGSVVELDRLAGEPLDILVN 66

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              IAKGE+ ++ E    FG+R  +I++ +
Sbjct: 67  GTMIAKGEVVMVGE---RFGIRFSDIVDPE 93


>gi|254702551|ref|ZP_05164379.1| Flagellar motor switch FliN protein [Brucella suis bv. 3 str. 686]
 gi|261753129|ref|ZP_05996838.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
 gi|261742882|gb|EEY30808.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
          Length = 107

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 64/97 (65%), Gaps = 2/97 (2%)

Query: 44  KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           + +++   E +  +     +KS    N DLIM IPV +Q++LG   M +S+L+ L +G V
Sbjct: 11  QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 70

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV
Sbjct: 71  ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGV 107


>gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
           5305]
 gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
           5305]
          Length = 227

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           N++  +     +++ ++ + ++I LG   + I  +V+L  G V+ LDK  G+ VDI +N 
Sbjct: 141 NSLGAQERAELEMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNG 200

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + IA+GE+ ++ +   +F VRV EIL  +
Sbjct: 201 RLIARGEVLVLND---NFCVRVAEILTPK 226


>gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
           BAA-613]
          Length = 320

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 18/136 (13%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNIS-----------EPISSDSNNILEKSTDNFDL 71
           D P Q+T   +P   +  +      + I+            PI      I E+       
Sbjct: 191 DMPCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKK---- 246

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +++I + + + LGS    + ++++L +G ++ LDK+ G   D+ +N + I +G++ +  +
Sbjct: 247 LLDITLDVSVRLGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGD 306

Query: 132 DDTHFGVRVIEILNAQ 147
               FG R+IE++  +
Sbjct: 307 ---RFGARIIEVVGKR 319


>gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila]
          Length = 125

 Score =   99 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 4/100 (4%)

Query: 48  DNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D+IS P ++D       S   +      IPVK+ + + S  + +  L+ + +G VI LDK
Sbjct: 21  DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
             GE +D+ +N + +AKGE+ ++      +G+R++++++ 
Sbjct: 81  LAGEPLDVRVNGRLLAKGEVVVVN---GKYGLRLVDVIDT 117


>gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
 gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
          Length = 137

 Score =   99 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 66/104 (63%), Gaps = 6/104 (5%)

Query: 44  KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           ++++D+   P    ++  L K   N +L+M++P+++ + LGS   QI +L+ L+KG ++ 
Sbjct: 33  RDEMDHAENPFDVSTDGDLPK---NLELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVE 89

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           L+K   + ++I +N++ +A GE+ ++++     G+R+ +I++ +
Sbjct: 90  LEKEADDPLEIYVNDRLLAYGEVVMIKD---KLGIRITDIVSLK 130


>gi|329888111|ref|ZP_08266709.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
 gi|328846667|gb|EGF96229.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
          Length = 110

 Score =   99 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 3/90 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           ++   EKS  +   + ++PV +  +LG   M ++ L+ L+KG V+ LD++VGE++DI +N
Sbjct: 20  ADEGGEKSAVDLAPVFDVPVNISAVLGKANMSVAQLLKLNKGSVLELDRKVGEAIDIFVN 79

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           N+ +A+GE+ ++E+     GV + EI+  +
Sbjct: 80  NRLVARGEVVVVED---RLGVTMTEIIKTE 106


>gi|227873537|ref|ZP_03991782.1| possible flagellar motor switch protein FliY [Oribacterium sinus
           F0268]
 gi|227840627|gb|EEJ51012.1| possible flagellar motor switch protein FliY [Oribacterium sinus
           F0268]
          Length = 472

 Score =   99 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            +      ++ DN +++M +P+++ + +G     + ++++ ++G ++ LDK  GE  D+ 
Sbjct: 378 ENEGGGAGENPDNREMLMKVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQADLY 437

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N + IAKG+I ++EE   +FG+R+ EIL  
Sbjct: 438 VNGECIAKGDIVVVEE---NFGIRITEILKK 465


>gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 103

 Score =   99 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 59/97 (60%), Gaps = 3/97 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
            E  +  S +     T +  L+ +IPVKM + +GS  + ++ L++L++G V+ LD++  E
Sbjct: 3   DESTAKGSKSAKSNRTKDLGLLSDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANE 62

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +D+ +N + IAKGE+  +      FGVR++++++ +
Sbjct: 63  LLDVVVNGKLIAKGEVVTVN---GRFGVRIVDVVSNE 96


>gi|116328051|ref|YP_797771.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331496|ref|YP_801214.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120795|gb|ABJ78838.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125185|gb|ABJ76456.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 174

 Score =   99 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +++          S P S+   +   +ST N +L+M++ + + + LG   M I ++  L+
Sbjct: 66  ADISAALGPSPTPSAPRSATRQSASTQST-NLNLLMDVNLALTVELGRTNMFIKDVNGLN 124

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +G V+ LDK VGE +DI  N   + +G++  M++    +G+++ EI++
Sbjct: 125 EGIVVELDKNVGEDLDILANGHLVGRGKLVAMDDF---YGIQITEIVD 169


>gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
           12809]
          Length = 299

 Score =   99 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 6/114 (5%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
             P   S     ++D +  +             S  N DL+++I V + + +GS  M + 
Sbjct: 182 EEPDFGSAFTFPEDDDEPAT---GGFGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLK 238

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +++ +  G++I LD+   E V++ INN+ IA+GE+ I++    +FG R+ EI++
Sbjct: 239 DILTMGSGNIIELDESADEPVELVINNKVIARGEVVIVD---GYFGFRIKEIVS 289


>gi|163758005|ref|ZP_02165093.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
 gi|162284294|gb|EDQ34577.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
          Length = 241

 Score = 99.5 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 59/79 (74%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
             DL+M IPV +QIILGS  M +S+L+ LS+G  I LD+++GE V+I +N + I +GEIT
Sbjct: 157 RVDLVMGIPVDVQIILGSSRMAVSSLMELSEGATIALDRKIGEPVEIMVNGKMIGRGEIT 216

Query: 128 IMEEDDTHFGVRVIEILNA 146
           +++ DDT F VR+IE++ A
Sbjct: 217 VLDSDDTKFAVRIIEVIGA 235


>gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
 gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
          Length = 96

 Score = 99.5 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
            +      NF L+ ++ VK+ + +GS  + +  L+ LS+  VI LD++  E +D+ +N  
Sbjct: 9   PVDTSVAANFRLLQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGT 68

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
            I +GE+  + +    FGVR+ E++N 
Sbjct: 69  LIGRGEVVTVGD---RFGVRMTELVNP 92


>gi|300024613|ref|YP_003757224.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526434|gb|ADJ24903.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 140

 Score = 99.5 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 7/130 (5%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK--STDNFDLIM 73
           E      D P      ++   + E      D+     P  S++  I E     DN  +I 
Sbjct: 9   EPAVQDFDQPFAGM-AATGFGDGESSSGFPDI----MPADSEAGGIEEPQIEADNSAMIA 63

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV M+++LGS  M ++ L  L+KG V+ LDK VG+ VDI +N   IA+GE+ I+ E  
Sbjct: 64  GLPVMMKVVLGSAKMPVATLAKLAKGSVVKLDKMVGDPVDILVNGHLIARGEVVILNEAS 123

Query: 134 THFGVRVIEI 143
           + FGV + ++
Sbjct: 124 SRFGVVLTQV 133


>gi|260466629|ref|ZP_05812817.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
           WSM2075]
 gi|259029635|gb|EEW30923.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
           WSM2075]
          Length = 128

 Score = 99.5 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 62/95 (65%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + E            +  N  +IMNIPV +QIILGS  M +S+L+ L KG  + L++R+G
Sbjct: 28  LHEEEQRPDAAFRAAAGANSSVIMNIPVDVQIILGSTEMAVSDLMALQKGSTVALNRRIG 87

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           E VD+ +N +KIA+GEIT++E D + FG+R+ EI+
Sbjct: 88  EPVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122


>gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
 gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
          Length = 117

 Score = 99.5 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + DL+M++ V + + +G   + I +L+ L++G +++LD+ V E +D+ +N   IA+GE+ 
Sbjct: 34  DLDLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 93

Query: 128 IMEEDDTHFGVRVIEILNA 146
              E    FG+R+I++++ 
Sbjct: 94  ---ESAGQFGLRLIDVVSP 109


>gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum
           SL003B-26A1]
 gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum
           SL003B-26A1]
          Length = 112

 Score = 99.2 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 66/112 (58%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           +N  E  I  +++++           +  +S  + + + ++PV++  +LG   M +S+L+
Sbjct: 2   SNEIENSIPLDELESPGRRSDDGEEGVHVQSAADLEAVFDVPVRISAVLGHSRMHVSDLL 61

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            L+ G V+ LD++VGE++DI +N++ +A+GE+ ++E+     GV + EI+  
Sbjct: 62  KLAAGTVLELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIKT 110


>gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
 gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
          Length = 102

 Score = 99.2 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +  L+ N+ V M + +G+  + + +L+ L++G V+ LD+  G+ +DI +N   IAKGE+ 
Sbjct: 20  DLGLLANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVV 79

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           ++ E    FG+R  +I++ +
Sbjct: 80  VVGE---KFGIRFGDIVDPR 96


>gi|118593639|ref|ZP_01551015.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
 gi|118433750|gb|EAV40411.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
          Length = 111

 Score = 98.8 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 59/90 (65%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS   + +S  + + + ++PV++  +LG   M +S+L+ L+ G V+ LD++VGE++DI +
Sbjct: 23  DSETHVPQSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLASGTVLELDRKVGEAIDIYV 82

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N++ +A+GE+ ++E+     GV + EI+  
Sbjct: 83  NDRLVARGEVVLVED---KLGVTMTEIIKT 109


>gi|13472566|ref|NP_104133.1| flagellar motor switch protein FliN [Mesorhizobium loti MAFF303099]
 gi|14023312|dbj|BAB49919.1| flagellar motor switch protein; FliN [Mesorhizobium loti
           MAFF303099]
          Length = 128

 Score = 98.8 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 63/95 (66%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           + E            +  N ++IMNIPV +QIILGS  M +++L+ L KG  + L++R+G
Sbjct: 28  LHEEEQRPDAAFRAAAGANSNVIMNIPVDVQIILGSTEMAVADLMALQKGSTVALNRRIG 87

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           E VD+ +N +KIA+GEIT++E D + FG+R+ EI+
Sbjct: 88  EPVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122


>gi|254417867|ref|ZP_05031591.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
 gi|196184044|gb|EDX79020.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
          Length = 110

 Score = 98.8 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           ++  +K+  +   +  +PV +  +LG   M ++ L+ L+KG V+ LD++VGE++DI +NN
Sbjct: 21  DDHGDKTAADLATVFEVPVNISAVLGKSHMSVAQLLKLNKGSVLELDRKVGEAIDIFVNN 80

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + IA+GE+ ++++     GV + EI+  +
Sbjct: 81  RLIARGEVVVVDD---RLGVTMTEIIKTE 106


>gi|95929862|ref|ZP_01312603.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684]
 gi|95134158|gb|EAT15816.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684]
          Length = 107

 Score = 98.8 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           ++   N +L+++IP+ + + +G   + +  L+ + +G VI L K   E +D+ +N++ IA
Sbjct: 19  DEDLKNLELLLDIPLDVSVEVGRTKILVRELLQMDEGYVIELGKNANEPLDVYVNSRLIA 78

Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
           +GE+ ++++     G+R+ ++++ 
Sbjct: 79  RGEVVLVDD---KLGLRLTDVISP 99


>gi|313672896|ref|YP_004051007.1| flagellar motor switch protein flin [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939652|gb|ADR18844.1| flagellar motor switch protein FliN [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 289

 Score = 98.8 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
             + +D D   E  + +     +K+T    N DL++++ V + I +GS  M + ++V+LS
Sbjct: 174 SAEDDDFDFSPEVTAVNPMPKQQKTTYGGKNIDLLLDVEVPVSIRIGSTKMFLKDIVSLS 233

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            G+++ LD+   E V + +NN+ IAKGE+ I++    +FGVR+ EI++ +
Sbjct: 234 PGNIVELDEYAEEPVVVMVNNKPIAKGEVVIVD---GYFGVRIKEIISKE 280


>gi|209964122|ref|YP_002297037.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|7025357|gb|AAF35847.1|AF220003_1 polar flagellar motor switch protein FpiN [Rhodospirillum centenum]
 gi|209957588|gb|ACI98224.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 108

 Score = 98.8 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 57/80 (71%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            + + + +IPV++  +LG C MQ+S+L+ L +G V+ LD++VGE++DI +NN+ +A+GE+
Sbjct: 29  KDLESVYDIPVQISAVLGKCTMQVSSLMKLGRGAVVELDRKVGEAIDIYVNNRLVARGEV 88

Query: 127 TIMEEDDTHFGVRVIEILNA 146
            ++E+     GV + EI+ +
Sbjct: 89  VVVED---RLGVTMTEIIKS 105


>gi|323139659|ref|ZP_08074701.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
 gi|322395091|gb|EFX97650.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
          Length = 124

 Score = 98.4 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D    S  +    L  +  + + + P+ +D + +        D I+ IPV +Q+++GS  
Sbjct: 5   DMGTESFESEGARLPDEAMLGSGAPPVDTDKSQL-----RRIDSILRIPVVVQVVVGSAT 59

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + +S+L+ L +G VI LD RVG+ VDI +N + IA+GE+ ++EED   FGV + EI   Q
Sbjct: 60  LPVSSLLKLGRGAVIPLDHRVGDPVDIVVNGRTIARGEVVVVEEDGARFGVSLTEICEPQ 119


>gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
           3645]
 gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
           3645]
          Length = 212

 Score = 98.4 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
           N +     S     +   D     +          +    DL+ ++ + ++I LG   M 
Sbjct: 95  NQAQAALASLDSPAEMASDAQLFQLRDFGGAPASTNKTTIDLVRDVELDVKIELGRTNMY 154

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           + +++ ++KG V++LDK  G+ VDI +N + IA+GE+ ++ +   +F VR+ E++
Sbjct: 155 LEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVLND---NFCVRIAELI 206


>gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
 gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
          Length = 107

 Score = 98.4 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
              DN  L+ +IP+++ + +GS  ++++ L++L+ G V+ LD++  E +DI +N   +AK
Sbjct: 17  AGRDNLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAK 76

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+  +      FG+RV++I+ A
Sbjct: 77  GEVVTVN---GKFGIRVVDIVAA 96


>gi|197104325|ref|YP_002129702.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
           HLK1]
 gi|196477745|gb|ACG77273.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
           HLK1]
          Length = 111

 Score = 98.4 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 57/90 (63%), Gaps = 3/90 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            + +   +K+  +   + ++PV +  +LG   + ++ L+ L++G V+ LD++VGE++DI 
Sbjct: 19  PEPSPDEDKTAGDLAPVFDVPVSISAVLGRSTLSVAQLLQLAQGSVLELDRKVGEAIDIY 78

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +NN+ +A+GE+ I++E     GV + EI+ 
Sbjct: 79  VNNRLVARGEVVIVDE---RLGVTMTEIIK 105


>gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 95

 Score = 98.4 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
             + ++  N  ++ N+ +++ + LG   M +  L+ L+ GDVI LD+     VD+ +N  
Sbjct: 2   PEVPETAANLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGT 61

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
            +AKGE+ +++++   FGVR++EI+++
Sbjct: 62  LVAKGEVVVVDDE---FGVRILEIISS 85


>gi|329849953|ref|ZP_08264799.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
           C19]
 gi|328841864|gb|EGF91434.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
           C19]
          Length = 108

 Score = 98.0 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++PV +  +LG   M +S L+ L  G V+ LD++VGE++DI +NN+ +A+GE+ ++++
Sbjct: 32  VFDVPVNISAVLGKSYMSVSQLLKLGAGSVLELDRKVGEAIDIYVNNRLVARGEVVVVDD 91

Query: 132 DDTHFGVRVIEILNAQ 147
                GV + EI+ ++
Sbjct: 92  ---RLGVTMTEIIKSE 104


>gi|254294568|ref|YP_003060591.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
 gi|254043099|gb|ACT59894.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
          Length = 115

 Score = 97.6 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 64/103 (62%), Gaps = 4/103 (3%)

Query: 44  KNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +     +++PIS++       K   +   + ++PV +Q ++G   M++S L++L +G V+
Sbjct: 12  EATGKVLAKPISAEEEAERREKFAADLAPMFDVPVSVQAVIGRTTMEVSELMHLGEGSVL 71

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            LD+RVGE++DI +N++ +A+GEI ++++     GV + EI+ 
Sbjct: 72  ELDRRVGEAIDIYVNSRLVARGEIVVVDD---RLGVTMTEIIK 111


>gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
 gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
          Length = 190

 Score = 97.6 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +  DL+M+IP+++ + +GS  + +  ++ L+  +++ LDK + + VD+ +N + IAKG
Sbjct: 100 EQEKLDLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKG 159

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+  +E+   HFG+++  I+  Q
Sbjct: 160 ELYTVED---HFGIKITSIITVQ 179


>gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium
           capsulatum ATCC 51196]
          Length = 248

 Score = 97.6 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 38  SEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           SE   +  +      P SS   S      S  N DL+++I V   +  GS  + I  L+ 
Sbjct: 130 SEKAAKAPETAARPAPASSGQPSAAASPASAANVDLLLDIEVDASLRFGSRELAIRELLE 189

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              GDV+ LD+ + + VD+ + ++ +A+GE+ ++     +FG+RV E+   +
Sbjct: 190 TGPGDVLELDRHITDPVDLVVGDKIVARGEVVLVN---GNFGLRVTEVAEPK 238


>gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
 gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
          Length = 96

 Score = 97.6 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            D F LI +I V++ + LG   M++ +++ L +  VI LD+   E +D+ +N + IA+GE
Sbjct: 5   ADGFGLIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGE 64

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           +         F +RV+EI+ A
Sbjct: 65  VIA---QGNRFAIRVLEIVGA 82


>gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 112

 Score = 97.6 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
            +N V+    P +  +      S +N  ++ NI V + + +GS  ++I +L+ L++G VI
Sbjct: 5   AENVVEEAKIPGAESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVI 64

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            LD+  G+ +DI  N   IAKGE+ ++ E    FG+R  EI+  +
Sbjct: 65  ELDRLAGDPLDILANGTMIAKGEVVMVGE---RFGIRFSEIVAPE 106


>gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 194

 Score = 97.6 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
           ++ + S++       EG    +     +      + + +    +  +    +  S     
Sbjct: 39  LLAQWSEMLNESGKKEGSQEDLAAQWSEMLHEEKSESVDANTHQTPLKESEKKESFTKEE 98

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
              +  +  D++++IP+ + + +GS  M I  ++ L+   VI LDK + E +D+ +N   
Sbjct: 99  FSPEILNKLDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVL 158

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +AKGE+  +++   +F +++ EIL  +
Sbjct: 159 VAKGELYQVDD---NFAIKITEILTKE 182


>gi|291532052|emb|CBK97637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
           siraeum 70/3]
          Length = 400

 Score = 97.2 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 10  YIKDNLEGR--SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67
           Y    +           P+Q      P  N     Q    ++   P+ S+         +
Sbjct: 288 YPNPAMNPAMNPAMYGQPVQPVMQPQPAVNYRNA-QLAQFESFEAPLGSE-------QKE 339

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           N  L+M++P+++ + +GS   +I +++  S+G +I L+++ G  VD+ +N   IA+G++
Sbjct: 340 NLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDV 398


>gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 178

 Score = 97.2 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                  + N +L+M++ + + + LG   M I ++  L++G V+ LDK VGE +DI  N 
Sbjct: 90  RQSSPSQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANG 149

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145
           + + +G++  M++    +G+++ EI++
Sbjct: 150 RLVGRGKLVAMDDF---YGIQITEIVD 173


>gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae
           12198]
 gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae
           12198]
          Length = 279

 Score = 97.2 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             N     ++       E  S+   N+ ++   N  +++++ + +++ +G   M + ++ 
Sbjct: 162 EENFSGKKEEASSPQTEEIDSAPGQNLSQEEMKNIGMLLDVKLNVKVRIGQKRMLLKDVT 221

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++  G VI L++   E ++I I+++ IAKGE+ I++    +FG++V EI   +
Sbjct: 222 SMDIGSVIELNQLANEPLEILIDDKVIAKGEVVIVD---GNFGIQVTEIGTKR 271


>gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium
           HTCC2207]
 gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium
           HTCC2207]
          Length = 108

 Score = 97.2 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D++ NIPV + + +G   ++I +L+ L++G V+ LD+  GE +D+ +NN  +A+GE+ 
Sbjct: 26  NADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVVELDRIAGEPLDLLVNNTLVAQGEVV 85

Query: 128 IMEEDDTHFGVRVIEIL 144
           ++ E    +GVR+  ++
Sbjct: 86  LVNE---RYGVRLTSVI 99


>gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 178

 Score = 97.2 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                  + N +L+M++ + + + LG   M I ++  L++G V+ LDK VGE +DI  N 
Sbjct: 90  RQSSPSQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANG 149

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145
           + + +G++  M++    +G+++ EI++
Sbjct: 150 RLVGRGKLVAMDDF---YGIQITEIVD 173


>gi|154252628|ref|YP_001413452.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
           DS-1]
 gi|154156578|gb|ABS63795.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
           DS-1]
          Length = 117

 Score = 97.2 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 67/113 (59%), Gaps = 5/113 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEK--STDNFDLIMNIPVKMQIILGSCCMQISN 92
            +    L    ++D++    +  S +  E+  +  + + + ++PV +  +LG   +++SN
Sbjct: 4   QDEEVALPDLANIDSLPPAEAGPSEHEEEQVRTAQDLEAVFDVPVNVSAVLGKTHIEVSN 63

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           L+ L +G ++ LD++VGE++DI +N++ +A+GE+ ++++     GV + EI+ 
Sbjct: 64  LLKLGRGAIVELDRKVGEAIDIYVNDRLVARGEVVVVDD---RLGVTMTEIVK 113


>gi|57241941|ref|ZP_00369881.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
 gi|57017133|gb|EAL53914.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
          Length = 279

 Score = 97.2 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 14  NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
            ++G    I   + D    + T + +   Q+ +    S     ++  +L +   N +LIM
Sbjct: 146 KIDGLEEQISLAMDDKLYKTLTKSGDAKAQQKEGAISS----GEAMMMLGEGLKNINLIM 201

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++ + +++ +G+  M + +++ +  G V+ L++   + ++I I +++IA GE+ I++   
Sbjct: 202 DVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVD--- 258

Query: 134 THFGVRVIEILNAQ 147
            +FGV++ EI   +
Sbjct: 259 GNFGVQITEIGTKK 272


>gi|83859386|ref|ZP_00952907.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852833|gb|EAP90686.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
          Length = 125

 Score = 96.9 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 70/123 (56%), Gaps = 6/123 (4%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNIPVKMQII 82
           + D +++ P  +        D + + EP +  +  ++++      +   + ++PV +  +
Sbjct: 1   MSDDDLNLPDLSDGPQGVNPDPEPMGEPANGAAQALIDEEVRTAVDLAPVFDVPVNISAV 60

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG   + +++L+ L+ G V+ LD++VGE++DI +N++ +A+GE+ ++++     GV + E
Sbjct: 61  LGKAHVDVNSLLRLTSGSVLELDRKVGEAIDIYVNSRLVARGEVVVVDD---RLGVTMTE 117

Query: 143 ILN 145
           I+ 
Sbjct: 118 IIK 120


>gi|254502033|ref|ZP_05114184.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
 gi|222438104|gb|EEE44783.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
          Length = 111

 Score = 96.9 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
            + + + P +  E   +  + + I  P          +S  + + + ++PV++  +LG  
Sbjct: 3   DEQDTNIPLDELEAPDRAGEQEEIPHP----------QSAADLEAVFDVPVRISAVLGHS 52

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            M +S+L+ L+ G V+ LD++VGE++DI +N++ +A+GE+ ++E+     GV + EI+  
Sbjct: 53  KMHVSDLLKLASGTVLELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIKT 109


>gi|254470176|ref|ZP_05083580.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
 gi|211960487|gb|EEA95683.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
          Length = 111

 Score = 96.9 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 59/83 (71%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           K+ ++ + + ++PV++  +LG   M++S+L++L  G V+ LD++VGE++D+ +NN+ IA+
Sbjct: 30  KAAEDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIAR 89

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           GE+ ++E+     GV + EI+ A
Sbjct: 90  GEVVLVED---KLGVTMTEIIKA 109


>gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 125

 Score = 96.9 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 4/100 (4%)

Query: 48  DNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D+IS P ++D       S   +      IPVK+ + + S  + +  L+ + +G VI LDK
Sbjct: 21  DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
             GE++D+ +N + +AKGE+ ++      +G+R++++++ 
Sbjct: 81  LAGETLDVRVNGRLLAKGEVVVVN---GKYGLRLVDVIDT 117


>gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
           98-5489]
 gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
           98-5489]
          Length = 119

 Score = 96.9 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           M   +  +  I  P   D    LE   +N+  ++++ V     LGS  + +  ++   KG
Sbjct: 1   MPADEFTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKG 60

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +I L K  GESV+I IN + + KGE+ + E+   +  +RV E+L++
Sbjct: 61  SIIDLQKPAGESVEIYINGRIVGKGEVMVYEK---NLAIRVNEVLDS 104


>gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740]
 gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
          Length = 117

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +  N+  P   + +N LE+   N+  ++++ V     LG+  + ++ ++   KG +I L 
Sbjct: 8   ETPNLINPRQQELSNYLEEVIRNYSGLLDMEVIFTAELGATKITLAEILKFEKGSIIDLQ 67

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  GESV+  +N + I KGE+ + E+   +  +R+ EIL++
Sbjct: 68  KPAGESVETFVNGRIIGKGEVMVYEK---NLAIRINEILDS 105


>gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC3088]
 gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC3088]
          Length = 102

 Score = 96.5 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
             +  +S+ N +++ NIPV + + +G   ++I +L+ L +G V+ L++  GE +D+ +NN
Sbjct: 11  EPVDRESSFNTEVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNN 70

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
             +A+GE+ ++ E    +GVR+  ++ ++
Sbjct: 71  TVVAQGEVVLVNE---RYGVRLTNVIPSE 96


>gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
 gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
          Length = 101

 Score = 96.1 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 55/93 (59%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S     + E      DL++++ V++ + LGSC + +  ++ LS G ++ L +R  + V +
Sbjct: 10  SGSETKVSENDRKALDLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLAQRATDPVGL 69

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +N++ +A GE+ ++EE   +FG+++ EI+  Q
Sbjct: 70  FVNDKLVAYGEVVVVEE---NFGIKITEIVGGQ 99


>gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 173

 Score = 96.1 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
            + +  I +  +    +  S        +  +  D++++IP+ + + +GS  M I  ++ 
Sbjct: 53  ESVDADIHQTLLKKSEKKESFTKEEFSPEILNKLDILLDIPITITVEIGSKSMPIEEILK 112

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           L+   VI LD+ + E +D+ +N   +AKGE+  +++   +F +++ EIL  +
Sbjct: 113 LAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQVDD---NFAIKITEILTKE 161


>gi|254440105|ref|ZP_05053599.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
           307]
 gi|198255551|gb|EDY79865.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
           307]
          Length = 98

 Score = 95.7 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T+    + NI V+M I +G   + IS L+ L++G V+ L++  GE +DI +N  KIAKGE
Sbjct: 14  TEKLRALENIEVEMSIEVGRTDISISELLRLNEGSVVELNRLAGEPLDILVNGTKIAKGE 73

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + ++ E    FG+R  EI++ +
Sbjct: 74  VVMVGE---RFGIRFSEIVDPE 92


>gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58]
 gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58]
          Length = 111

 Score = 95.7 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 60/102 (58%), Gaps = 5/102 (4%)

Query: 48  DNISEPISSDSNNILEKSTDN--FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           D    P      + + K T+N  F L+ +IPV+M + +GS  ++++ +++L++G ++ LD
Sbjct: 3   DMSEAPRMERPEDPVSKMTNNRQFKLLADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELD 62

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++  + +DI +N   IAKGE+  +      +G+R+++I   +
Sbjct: 63  RQADDLLDIMVNGALIAKGEVVTVN---GRYGIRIVDIAATE 101


>gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
 gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
          Length = 226

 Score = 95.7 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
            +       + N+ + + I LG   + I  ++ + +G V+ LDK  G+ VDI +N + IA
Sbjct: 144 PEEAMKLSSLQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIA 203

Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147
           +GE+ ++ +   +F VRV EI++ +
Sbjct: 204 RGEVLVLND---NFCVRVAEIISPE 225


>gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
 gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
          Length = 115

 Score = 95.7 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
            + ++Q  D     E  S +S +   K   +      +PV++ + L S  M +  L  + 
Sbjct: 3   EQNILQDEDFLLDDEFFSENSASAQPKPKKDMSFFHQLPVQVTLELASAEMSLGELTQMG 62

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +GDV+ LD+ VGE +DI +N   + +GE+  +      +GVR++E+
Sbjct: 63  EGDVVALDRMVGEPLDIRVNGALLGRGEVVEVN---GRYGVRLLEV 105


>gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
 gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
          Length = 133

 Score = 95.3 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 67/126 (53%), Gaps = 8/126 (6%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQI 81
           ++TN S    NSE   + +  + +++  + +S     +  D  +     +++++P+ + +
Sbjct: 3   EETNPSPEEQNSEEQPELSPDELMAQQFAQESYGSETEEEDRIEKSKFSILLDVPLDVIV 62

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            +GS  M +  ++ L+   V+ L++ + E VD+ +N + IAKGE+  +     +FG+++ 
Sbjct: 63  EIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTV---KNNFGLKIT 119

Query: 142 EILNAQ 147
            ++  +
Sbjct: 120 HVVTPE 125


>gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 119

 Score = 95.3 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           M   +  +  I  P   D    LE   +N+  ++++ V  +  LGS  + +S ++   KG
Sbjct: 1   MPADEFTLAKIQAPKQEDLARYLEGIINNYGGLLDMEVVFRSELGSTKIPLSEILQFEKG 60

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +I L K  GESV+I IN + I KGE+ + E+   +  +RV EIL++
Sbjct: 61  SIIDLQKPAGESVEIFINGRIIGKGEVMVYEK---NLAIRVNEILDS 104


>gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
 gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
          Length = 124

 Score = 95.3 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                  T +F  I ++P++++  LG   M +  +++L  G VI LDK  GE VD+ +N+
Sbjct: 34  PAPAPGVTADFKRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVND 93

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
             +AKGE+ ++ +    FGVR+  +   +
Sbjct: 94  IPLAKGEVVVINDA---FGVRINSLAAVE 119


>gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
 gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
 gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
          Length = 278

 Score = 95.3 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
               V +     +  ++ +      N ++I+++ + +++ +G   M + +++ +  G VI
Sbjct: 169 AATPVAHAESGSTPVAHALSPTEFKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVI 228

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            L++   + +DI ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 229 ELNQLANDPLDILVDDKVIAKGEVVIVD---GNFGIQITDIGTKR 270


>gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
           aurantiaca DW4/3-1]
          Length = 441

 Score = 95.3 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 19  SMHIDNP-LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77
           S+ I  P  Q     SP         + D  + SE  S D+ N  E S    DL+ +IP+
Sbjct: 321 SIVIGEPAFQRAVPPSPEGEEAFTQPETDGSSESEGQSLDTMNKSEGS----DLLADIPL 376

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           ++ + L    +    +V+L  G V+ L +  GE V++++N + +A+GE+  +E      G
Sbjct: 377 QIAVELARVPVTADEVVSLRVGHVLELHRSPGEPVELSVNGKVVARGELVEVE---GQLG 433

Query: 138 VRVIEILN 145
           VRV+ +  
Sbjct: 434 VRVLSLAG 441


>gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
           98-5491]
 gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
           98-5491]
          Length = 119

 Score = 95.3 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           M   +  +  I  P   D    LE   +N+  ++++ V     LGS  + +  ++   KG
Sbjct: 1   MPADEFTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKG 60

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +I L K  GESV+I IN + + KGE+ + E+   +  +RV EIL++
Sbjct: 61  SIIDLQKPAGESVEIYINGRIVGKGEVMVYEK---NLAIRVNEILDS 104


>gi|150388449|ref|YP_001318498.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
           QYMF]
 gi|149948311|gb|ABR46839.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
           QYMF]
          Length = 143

 Score = 95.3 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           +  +   +++ V        +      +   +N   I ++P+ + + LG    +IS ++ 
Sbjct: 29  DEVQPSTKQSKVSVQPIQFQAFEQVSSKGVPENISTIQDVPLSVTVELGRTVKKISEVLE 88

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
              G +I ++K VGE VDI +N Q +AKGE+ +++E   ++G R+ EI
Sbjct: 89  FGPGTIIEVEKLVGEHVDILVNGQYVAKGEVVVIDE---NYGTRITEI 133


>gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC
           49179]
 gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC
           49179]
          Length = 292

 Score = 95.3 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 31  VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
               T+         ++  +    +    ++ +    N +++++I + +++ +G   M +
Sbjct: 170 APQNTSKPRNAPSMPNLPVVPTERTESDGHLEQLEARNINMLLDIKLNVRVRIGQKKMIL 229

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            ++V++  G VI L++ V + ++I ++++ IAKGE+ I++    +FG+++ +I + +
Sbjct: 230 KDVVSMDIGSVIELNQMVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGSKR 283


>gi|114569234|ref|YP_755914.1| flagellar motor switch protein [Maricaulis maris MCS10]
 gi|114339696|gb|ABI64976.1| flagellar motor switch protein FliN [Maricaulis maris MCS10]
          Length = 118

 Score = 94.9 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           EKS  +   + ++PV +  +LG   + +++L+ L+ G V+ LD+++GE++DI +NN+ +A
Sbjct: 34  EKSAADLAPVFDVPVNISAVLGKAHIDVNSLLKLTSGSVVELDRKIGEAIDIYVNNRLVA 93

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
           +GE+ ++++     GV + EI+ 
Sbjct: 94  RGEVVVVDD---RLGVTMTEIIK 113


>gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
           L-1]
 gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
           L-1]
          Length = 112

 Score = 94.9 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
             F L+ +IPV+M + +GS  ++++ +++L++G V+ LD++  + +DI +N   IAKGE+
Sbjct: 25  RQFRLLADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEV 84

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
             +      +G+R++EI  A+
Sbjct: 85  VTVN---GRYGIRIVEIAAAE 102


>gi|226225726|ref|YP_002759832.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
 gi|226088917|dbj|BAH37362.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
          Length = 141

 Score = 94.9 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
             +++++ + + I LG   M +  ++ L +G VI LD+  GE +DI + +++ A+GE+ +
Sbjct: 57  IGMLLDLTLPVSIELGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVV 116

Query: 129 MEEDDTHFGVRVIEIL 144
           + E   HFGVR+  +L
Sbjct: 117 LGE---HFGVRITRVL 129


>gi|288962690|ref|YP_003452984.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
 gi|288914956|dbj|BAI76440.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
          Length = 112

 Score = 94.9 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 62/102 (60%), Gaps = 3/102 (2%)

Query: 47  VDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +D+ S+      + I +K  D   + I N+PV +Q++LG   M ++ L+ L +G V+ L+
Sbjct: 9   LDDDSKQAEKAPDRIGDKPYDGPMNAIYNVPVDVQVVLGRTSMLVAQLLKLGRGAVLELE 68

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++V E V++ +N++ +A+GE+ I+E+     GV + EI+  +
Sbjct: 69  RKVDEPVEVLVNHRLVARGEVVIVEDQ--RLGVTLTEIVRTE 108


>gi|323186822|gb|EFZ72142.1| flagellar motor switch protein fliN domain protein [Escherichia
           coli RN587/1]
          Length = 102

 Score = 94.9 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78
           ++NP  D N +     +E L ++      S             +  +  + DLIM+IPVK
Sbjct: 4   MNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGTFQDIDLIMDIPVK 63

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           + + LG   M I  L+ L++G V+ LD   GE +DI IN
Sbjct: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102


>gi|315638333|ref|ZP_07893513.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
 gi|315481600|gb|EFU72224.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
          Length = 281

 Score = 94.9 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 75/147 (51%), Gaps = 9/147 (6%)

Query: 1   MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60
            +K  +    I+D  E  S+ +D+    T   S  + +    ++  V       S ++  
Sbjct: 137 FVKLYNYDIKIEDLEEQISLVMDDKFYKTLTKSGDDEATTQQKEGAVS------SGEAMM 190

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
            L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I I +++
Sbjct: 191 TLGEGLKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKR 250

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
           IA GE+ I++    +FGV++ EI   +
Sbjct: 251 IAYGEVVIVD---GNFGVQITEIGTKK 274


>gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
 gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
          Length = 261

 Score = 94.9 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
             +   ST N +L++++ + + +  G   + +  +++L+ G V+ LD++V E V++ ++ 
Sbjct: 174 PEVTGTSTSNLNLVLDVELNVTLRFGQRQLSLREVLDLTSGSVVELDRQVDEPVELVLDG 233

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEIL 144
           + +A+GE  I++    ++G+R+ ++L
Sbjct: 234 KVVARGEAVIID---GNYGMRITQVL 256


>gi|153949693|ref|YP_001399619.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|152961188|gb|ABS48649.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
          Length = 137

 Score = 94.9 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D +  SPT + + +I   ++ N  E  ++ +    ++      L   IPV + + + S  
Sbjct: 19  DESAISPTEHFDSMINSPEIINTPEKTATKT----DEQKRKMSLFSRIPVTLTLEVASVE 74

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +S L+ ++   VI LDK  GE +DI +N     + E+ ++ E    +G+R+I I
Sbjct: 75  LPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127


>gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 541

 Score = 94.9 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           SS  + + E+     DLI +IPV++  +LG   + +  L+    G V+ L       VDI
Sbjct: 449 SSPESTLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDI 508

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
             N + +A+GE+    E    FG+++ EI+
Sbjct: 509 LANGKLVARGEVVHYNE---RFGIKITEIM 535


>gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM
           1740]
 gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
          Length = 289

 Score = 94.5 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           N+ E    N  +++++ +++++ +G   M + +++++  G V+ L++   + ++I ++++
Sbjct: 197 NLSEPEMKNIGMLLDVKLQVKVRIGQKKMLLKDVISMDIGSVVELNQLANDPLEILVDDK 256

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            IAKGE+ I++    +FG+++ EI   +
Sbjct: 257 VIAKGEVVIVD---GNFGIQITEIGTKR 281


>gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM
           16994]
 gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM
           16994]
          Length = 288

 Score = 94.5 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           N +     +      N  +    P SS  +  + E    N  LIM + + +++ +G   M
Sbjct: 165 NEALTGEKAAPAPASNSSNIFDAPSSSVPAVKLDEGEMKNIGLIMGVKLPVRVRIGKKKM 224

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + +++++  G VI L++   + +DI +++  IA+GE+ I++    +FGV++  I   +
Sbjct: 225 LLKDVLSMDIGSVIELNQLANDPLDILVDDHVIAQGEVVIVD---GNFGVQITSIGTKR 280


>gi|237751753|ref|ZP_04582233.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
 gi|229373119|gb|EEO23510.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
          Length = 283

 Score = 94.5 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           + K+     S    +   ++ +K   N  ++++I + +++ +G   M + +++++  G V
Sbjct: 173 VPKDLKAPASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSV 232

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + L++   + ++I +N++ I KGE+ +++    +F +++ EI   +
Sbjct: 233 VELNQLASDPLEILVNDKIIGKGEVVVVD---GNFAIQITEIGTKK 275


>gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
           UT26S]
 gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
           UT26S]
          Length = 112

 Score = 94.5 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
             F L+ +IPV+M + +GS  ++++ +++LS+G V+ LD++  + +DI +N   IAKGE+
Sbjct: 25  RQFRLLADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEV 84

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
             +      +G+R++EI  A+
Sbjct: 85  VTVN---GRYGIRIVEIAAAE 102


>gi|296283237|ref|ZP_06861235.1| flagellar motor switch protein [Citromicrobium bathyomarinum JL354]
          Length = 126

 Score = 94.5 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 5/121 (4%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIILGS 85
           D   +    NSE  +    +   + P   +   + E        D +  +PVKMQ +LG 
Sbjct: 7   DIAAAPIEQNSEAFVDLPSLGETAAPEPLEDLAVYEGDGGALGLDAVHEVPVKMQAVLGR 66

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             M +S L++++ G V+ LD++VGE VDI ++N+ IA+GE+ ++++     GV + EI++
Sbjct: 67  ARMTVSELMSIAPGRVVELDRKVGEPVDIFVSNRLIARGEVVLIDKA---LGVTLTEIVH 123

Query: 146 A 146
            
Sbjct: 124 E 124


>gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92]
 gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein
           [Campylobacter curvus 525.92]
          Length = 286

 Score = 94.2 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +++   ++   + ++      +    +   N +LIM++ + +++ +GS  M + ++++
Sbjct: 171 EPTKVGESESQSGDQAKATHGSRSEFSAEEMRNINLIMDVRLPIRVRIGSKRMLLKDVLS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G VI L++   + ++I I ++ IA GE+ I++    +FG+++ +I + +
Sbjct: 231 MDIGSVIELNQLANDPLEILIGDKVIALGEVVIID---GNFGIQITQIGSKR 279


>gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
           DG1235]
 gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
           DG1235]
          Length = 82

 Score = 93.8 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           + T +  L+M++ VK+ + LGSC M +  ++ L  G VI L++   + V + IN++ IA 
Sbjct: 3   EETKDLGLLMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAY 62

Query: 124 GEITIMEEDDTHFGVRVIEILN 145
           GE+ ++E+   +FG+++ E+ N
Sbjct: 63  GEVVVVED---NFGIKITEMAN 81


>gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
 gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
          Length = 279

 Score = 93.8 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 7/110 (6%)

Query: 42  IQKNDVDNISEPISSDSNNILE----KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           + K D++ I  P    + +       +   N  LIM++ + +++ +GS  M + +++ + 
Sbjct: 166 LTKTDLEEIVAPSEDHTQDHKALANVEELRNIGLIMDVRLPIRVRIGSKKMLLKDVLTMD 225

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            G VI LD+   + ++I I ++KIA GE+ I++    +FGV++ EI + +
Sbjct: 226 IGSVIELDQLANDPLEILIGDKKIAYGEVVIVD---GNFGVQITEIGSKK 272


>gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
 gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
          Length = 149

 Score = 93.8 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
            P    +        E +  +   ++ +E  +  +    +  + +   I++IP+ + +++
Sbjct: 22  EPTPQNDEDLMKLWEEAIQAQAQTESSAE--NQQAQATTQDISKDLQRILDIPLSITVVI 79

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G+  + I  L+NL  G V+ LD+ +   V +  N + IAK E+ ++ E   +FG+R+ EI
Sbjct: 80  GTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGE---NFGIRIAEI 136

Query: 144 LNAQ 147
           +  +
Sbjct: 137 IEKE 140


>gi|218663132|ref|ZP_03519062.1| putative flagellar motor switch protein [Rhizobium etli IE4771]
          Length = 77

 Score = 93.8 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 62/75 (82%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           M+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT+++ D
Sbjct: 1   MDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDND 60

Query: 133 DTHFGVRVIEILNAQ 147
           DT FGV++IE+L+ +
Sbjct: 61  DTRFGVKLIEVLSTK 75


>gi|22127343|ref|NP_670766.1| flagellar switch protein [Yersinia pestis KIM 10]
 gi|45442781|ref|NP_994320.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597652|ref|YP_071843.1| flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
 gi|108809074|ref|YP_652990.1| flagellar switch protein [Yersinia pestis Antiqua]
 gi|108810733|ref|YP_646500.1| flagellar switch protein [Yersinia pestis Nepal516]
 gi|145597802|ref|YP_001161878.1| flagellar switch protein [Yersinia pestis Pestoides F]
 gi|150260264|ref|ZP_01916992.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
           CA88-4125]
 gi|165925127|ref|ZP_02220959.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939068|ref|ZP_02227620.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008730|ref|ZP_02229628.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212179|ref|ZP_02238214.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399118|ref|ZP_02304642.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419195|ref|ZP_02310948.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425214|ref|ZP_02316967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466356|ref|ZP_02331060.1| flagellar switch protein [Yersinia pestis FV-1]
 gi|170022956|ref|YP_001719461.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186896786|ref|YP_001873898.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927897|ref|YP_002345772.1| flagellar switch protein [Yersinia pestis CO92]
 gi|229837393|ref|ZP_04457556.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
 gi|229840606|ref|ZP_04460765.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842843|ref|ZP_04462995.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900930|ref|ZP_04516054.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
 gi|270487689|ref|ZP_06204763.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|294502774|ref|YP_003566836.1| flagellar switch protein [Yersinia pestis Z176003]
 gi|21960426|gb|AAM87017.1|AE013950_2 hypothetical [Yersinia pestis KIM 10]
 gi|45437647|gb|AAS63197.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590934|emb|CAH22590.1| Flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
 gi|108774381|gb|ABG16900.1| flagellar switch protein [Yersinia pestis Nepal516]
 gi|108780987|gb|ABG15045.1| flagellar switch protein [Yersinia pestis Antiqua]
 gi|115346508|emb|CAL19384.1| flagellar switch protein [Yersinia pestis CO92]
 gi|145209498|gb|ABP38905.1| flagellar switch protein [Yersinia pestis Pestoides F]
 gi|149289672|gb|EDM39749.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
           CA88-4125]
 gi|165913024|gb|EDR31649.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923327|gb|EDR40478.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992069|gb|EDR44370.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206925|gb|EDR51405.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963189|gb|EDR59210.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051622|gb|EDR63030.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055977|gb|EDR65758.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749490|gb|ACA67008.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186699812|gb|ACC90441.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682269|gb|EEO78361.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
 gi|229690110|gb|EEO82167.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696972|gb|EEO87019.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705516|gb|EEO91526.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
 gi|262360806|gb|ACY57527.1| flagellar switch protein [Yersinia pestis D106004]
 gi|262364751|gb|ACY61308.1| flagellar switch protein [Yersinia pestis D182038]
 gi|270336193|gb|EFA46970.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|294353233|gb|ADE63574.1| flagellar switch protein [Yersinia pestis Z176003]
 gi|320016726|gb|ADW00298.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 137

 Score = 93.4 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D +  SPT + + +I   ++ N  E  ++ +    ++      L   IPV + + + S  
Sbjct: 19  DESAISPTEHFDSVINSPEIINTPEKTATKT----DEQKRKMSLFSRIPVTLTLEVASVE 74

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +S L+ ++   VI LDK  GE +DI +N     + E+ ++ E    +G+R+I I
Sbjct: 75  IPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127


>gi|83955111|ref|ZP_00963767.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
 gi|83840440|gb|EAP79613.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
          Length = 114

 Score = 93.4 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S P  +++         + D I  + + ++++LG   M IS L+NL+KG VI LD+RVGE
Sbjct: 16  STPQDAETKAPAGLDGKSLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGE 75

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            VDI IN++ +A+G++  ++ D    GV + EI+ 
Sbjct: 76  PVDIMINDRMVARGDLVRVQGDS--LGVALREIVK 108


>gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
 gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
          Length = 123

 Score = 93.4 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T ++++ I + + +  S+    + +  LE+   ++  ++++ +     LGS  + +  ++
Sbjct: 4   TESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 64  RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
 gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
          Length = 118

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           D       S  +    K   +      +PV++ + L S  M +  L  + +GDV+ LD+ 
Sbjct: 16  DEFFTEEESHQSKSQAKPVKDMSFFHQLPVQVTLELASAEMSLGELTKMGEGDVVALDRM 75

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           VGE +DI +N   + +GE+  +      +GVR++E+
Sbjct: 76  VGEPLDIRVNGALLGRGEVVEVN---GRYGVRLLEV 108


>gi|86151260|ref|ZP_01069475.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841607|gb|EAQ58854.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 280

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   IL +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 184 AEEKAIILSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273


>gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum
           JL354]
          Length = 118

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           D + LI  I V++ + LG   + +  ++ L +  ++ LD+   E +DI +N + IA+GE+
Sbjct: 6   DGYGLIQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEV 65

Query: 127 TIMEEDDTHFGVRVIEILNA 146
                    F +R++E+  A
Sbjct: 66  VA---QGNRFAIRILELSGA 82


>gi|157414373|ref|YP_001481629.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385337|gb|ABV51652.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|315931623|gb|EFV10588.1| Flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 280

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 184 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273


>gi|57168741|ref|ZP_00367872.1| fliY protein (fliY) [Campylobacter coli RM2228]
 gi|305432517|ref|ZP_07401679.1| flagellar motor switch protein [Campylobacter coli JV20]
 gi|57019788|gb|EAL56471.1| fliY protein (fliY) [Campylobacter coli RM2228]
 gi|304444556|gb|EFM37207.1| flagellar motor switch protein [Campylobacter coli JV20]
          Length = 278

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 59/105 (56%), Gaps = 3/105 (2%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
             +D    S   S +    + +   N +LIM++ + +++ +G+  M + +++ +  G V+
Sbjct: 170 AADDGHAHSSSNSENKGFEISEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVV 229

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            L++   + ++I I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 230 ELNQLANDPLEILIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 271


>gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 172

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++ +++ I LG   M I +++ LS+G V+ LDK +GE +DI  N + + +G++ ++++  
Sbjct: 93  DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDD-- 150

Query: 134 THFGVRVIEILNA 146
            ++GV++ +I++ 
Sbjct: 151 -YYGVQITQIVDP 162


>gi|162419818|ref|YP_001604860.1| flagellar switch protein [Yersinia pestis Angola]
 gi|162352633|gb|ABX86581.1| flagellar motor switch protein FliN [Yersinia pestis Angola]
          Length = 137

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 28  DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           D +  SPT + + +I   ++ N  E  ++ +    ++      L   IPV + + + S  
Sbjct: 19  DESAISPTEHFDSVINSPEIINTPEKTATKT----DEQKRKMSLFSRIPVTLTLEVASVE 74

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +S L+ ++   VI LDK  GE +DI +N     + E+ ++ E    +G+R+I I
Sbjct: 75  IPLSELLTVNNDSVIELDKLAGEPLDIQVNGIMFGQAEVVVINE---KYGLRIINI 127


>gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
 gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
          Length = 116

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
             S+     S+++   I NIPV + + + S  +++ +L+N++ G VI LDK  GE +D+ 
Sbjct: 20  PSSDAPAPVSSNDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVR 79

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +N   +   E+ ++      +G+R++ +++ +
Sbjct: 80  VNGTLLGHAEVVVVN---NKYGLRLVNVVDEK 108


>gi|86154056|ref|ZP_01072257.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842470|gb|EAQ59684.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 280

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273


>gi|86149628|ref|ZP_01067858.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218561744|ref|YP_002343523.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839896|gb|EAQ57155.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112359450|emb|CAL34233.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284925355|gb|ADC27707.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927742|gb|EFV07069.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929163|gb|EFV08388.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 280

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273


>gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
 gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
          Length = 288

 Score = 92.6 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 61  ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           +  +  +N  LIM++ + +++ +G   M + +++N+  G VI L++   + +DI ++N  
Sbjct: 197 LSGEEMNNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHV 256

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147
           IA+GE+ I++    +FGV++  I + +
Sbjct: 257 IAQGEVVIVD---GNFGVQITSIGSKR 280


>gi|148926865|ref|ZP_01810543.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|167004760|ref|ZP_02270518.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|205356442|ref|ZP_03223206.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|145844442|gb|EDK21550.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|205345629|gb|EDZ32268.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|315057500|gb|ADT71829.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 280

 Score = 92.6 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273


>gi|283955503|ref|ZP_06372998.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792964|gb|EFC31738.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 280

 Score = 92.6 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 184 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273


>gi|315123664|ref|YP_004065668.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017386|gb|ADT65479.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 280

 Score = 92.6 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 184 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273


>gi|88597660|ref|ZP_01100893.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88189964|gb|EAQ93940.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 280

 Score = 92.6 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273


>gi|153951920|ref|YP_001397324.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939366|gb|ABS44107.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 273

 Score = 92.6 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 177 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 236

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 237 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 266


>gi|163784306|ref|ZP_02179216.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880424|gb|EDP74018.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 193

 Score = 92.6 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 67/134 (50%), Gaps = 3/134 (2%)

Query: 14  NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
           N E  +   +  LQ+        + E + ++ +     +    ++    E   +  +L+M
Sbjct: 52  NQEEIAKQWEEALQEQKSKEEGIDQEEIAKQWEEALQEQKTQGETPVFEEVKDEKLELLM 111

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IP+++ + +G   + + +++ L+   V+ LDK + E VDI IN + +AKGE+   E   
Sbjct: 112 DIPLEISVEVGGRDILLEDILKLNPNTVLELDKYINEPVDIKINGKLVAKGELYTAE--- 168

Query: 134 THFGVRVIEILNAQ 147
            +FGV++  I+  Q
Sbjct: 169 NNFGVKITSIVTVQ 182


>gi|57237069|ref|YP_178081.1| flagellar motor switch protein FliY [Campylobacter jejuni RM1221]
 gi|121612924|ref|YP_999785.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|57165873|gb|AAW34652.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
 gi|121504209|gb|EAQ71980.2| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 273

 Score = 92.6 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 177 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 236

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 237 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 266


>gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT
           98-5491]
 gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
 gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
          Length = 285

 Score = 92.6 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 66/129 (51%), Gaps = 9/129 (6%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
           S   +N  ++ +  +     +  IQ  +  + +      +  +      N  +++++ ++
Sbjct: 159 SEEFENLFKENSQETNQETPQPSIQNTNHQDNA------ALELNNAEMKNMAMLLDVRLQ 212

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           +++ +G   M + +++ +  G V+ L++   + +++ ++++ IAKGE+ I++    +FG+
Sbjct: 213 VKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVVIVD---GNFGI 269

Query: 139 RVIEILNAQ 147
           ++ EI   +
Sbjct: 270 QITEIAPKK 278


>gi|283955446|ref|ZP_06372944.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793073|gb|EFC31844.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 280

 Score = 92.2 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 184 AEEKAIMLGEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273


>gi|258404715|ref|YP_003197457.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
           5692]
 gi|257796942|gb|ACV67879.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
           5692]
          Length = 109

 Score = 92.2 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +P+++   LG+  + + +L+ L +G VI L+K  GE +D+ +N++ IA+ E  ++ E   
Sbjct: 33  VPLQVSAELGTTRILVKDLLQLREGSVIELEKLAGEPLDVFVNSRLIARAEAVVVNE--- 89

Query: 135 HFGVRVIEILNA 146
             G+R+ ++++ 
Sbjct: 90  KIGLRLTDVVSP 101


>gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 93

 Score = 92.2 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
              FDLIM++ V++ + LG   M++ +++ L++  V+ LD+   E +D+ +N + IA+GE
Sbjct: 5   PRGFDLIMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGE 64

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           +    +    FG+R++E++ 
Sbjct: 65  VVAQGD---RFGLRIVELVG 81


>gi|312115254|ref|YP_004012850.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220383|gb|ADP71751.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 120

 Score = 92.2 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 56/80 (70%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
             + + ++ IP+ ++++LGS  M I  +  L +G VI LD++VG++VD+ IN + IAKGE
Sbjct: 37  PGSLERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKVGDAVDVMINGRIIAKGE 96

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           I +++E+ + FGV + E+++
Sbjct: 97  IVVLDEEGSRFGVTLTEMID 116


>gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 279

 Score = 91.8 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           Q  +  +     +     +      N  +++++ +++++ +G   M + +++ +  G V+
Sbjct: 171 QALEESSTGNGEAQAKVELNNAEMKNMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVV 230

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            L++   + +++ ++++ IAKGE+ I++    +FG+++ EI   +
Sbjct: 231 ELNQLANDPLEVLVDDKVIAKGEVVIVD---GNFGIQITEIAPKK 272


>gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori
           SouthAfrica7]
          Length = 282

 Score = 91.8 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
            +  E   +    ++ +E   +   ++      N  +++++ + +++ +G   M + ++V
Sbjct: 165 ESQFETKKEPESAESATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVV 224

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 225 SMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 274


>gi|27904580|ref|NP_777706.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395830|sp|Q89AZ3|FLIN_BUCBP RecName: Full=Flagellar motor switch protein FliN
 gi|27903977|gb|AAO26811.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 134

 Score = 91.8 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           N     +     IM++PV + I +G+  + I +L+ L    ++ LDK  G+ ++I +N  
Sbjct: 45  NSKNDISSKMKFIMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGY 104

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILN 145
            IA GE+ + E     +G+R+I I++
Sbjct: 105 VIATGELVVTE---NKYGIRIINIID 127


>gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
 gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
 gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
 gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
          Length = 293

 Score = 91.8 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
            + +    N +++++I + +++ +G   M + ++V++  G V+ L++ V + ++I ++++
Sbjct: 200 PLEQTEIRNINMLLDIKLNVRVRIGQKKMILKDVVSMDIGSVVELNQMVNDPLEILVDDK 259

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            IAKGE+ I++    +FG+++ EI   +
Sbjct: 260 VIAKGEVVIVD---GNFGIQITEIGTKK 284


>gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
 gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
          Length = 128

 Score = 91.5 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           I    S    +   +   N +    +PV++ + L S  M +  L  + +GDVI LD+ VG
Sbjct: 27  IFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVG 86

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           E +DI +N   + +GE+    E    +GVR++EI
Sbjct: 87  EPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 117


>gi|328545472|ref|YP_004305581.1| flagellar motor switch protein [polymorphum gilvum SL003B-26A1]
 gi|326415213|gb|ADZ72276.1| Probable flagellar motor switch protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 136

 Score = 91.5 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 69/119 (57%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           T     T N+        +++     +      L     N D I+ IPV +Q++LGS  M
Sbjct: 12  TPAGKQTINAAGPANFAKIESGGRKAARMGTEDLIGDERNLDTILGIPVNIQVVLGSATM 71

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            ++NL+ L +G VI L+ RVGE VDI +N + +A+GE+ ++E+D++ FGV + EI++AQ
Sbjct: 72  LVANLLKLGRGAVIPLNHRVGEPVDIVVNGRVVARGEVVVVEDDNSRFGVSLTEIISAQ 130


>gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1]
 gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5]
 gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5]
 gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1]
          Length = 117

 Score = 91.5 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
            +  +        P   +    LE+  +++  ++++ +     LGS  + +  ++   +G
Sbjct: 3   PVNPRLKKQPTLNPRELELTTYLEELINDYKGLLDMEITFMAELGSTFIPLREVLRFERG 62

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            VI L K  GESVD  +N + I KGE+ + E+   +  +R+ E+L++
Sbjct: 63  SVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK---NLAIRLNEVLDS 106


>gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
 gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
          Length = 123

 Score = 91.5 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
           + +P+ D +  S  N++ + + +     +SEP++  +   L +   +      IPV + +
Sbjct: 1   MSSPISDNDFDSLINDAGLNLDEP----VSEPVAEQAPASLPQ--QDLSFFGKIPVNVTL 54

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            + S  + +  L+++  G VI LDK  GE +D+ +N    AK E+ +M     ++G+R++
Sbjct: 55  EVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMN---GNYGLRIV 111

Query: 142 E 142
           E
Sbjct: 112 E 112


>gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 120

 Score = 91.5 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           + D+     +            +     NIPV + + + S  + + +L+   +G VI LD
Sbjct: 16  NFDDFQLEENLSEPAYTPLPERDLSFFKNIPVTVTLEVASKEVALGDLMKAGEGSVIELD 75

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  GE +D+ +N   +   E+ ++ +    +G+R+I++++ 
Sbjct: 76  KMNGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVVDE 113


>gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC
           51449]
 gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449]
          Length = 278

 Score = 91.1 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
             +      N ++I+++ + +++ +G   M + +++ +  G VI L++   + ++I +++
Sbjct: 185 PALSATEYKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEILVDD 244

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + IAKGE+ I++    +FG+++ +I   +
Sbjct: 245 KVIAKGEVVIVD---GNFGIQITDIGTKR 270


>gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267]
 gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267]
          Length = 277

 Score = 91.1 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
            D    ++  ++  ++++ +   N  LIM++ + + + +GS  M + +++ +  G VI L
Sbjct: 171 KDQKESAQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLKDVLTMDIGSVIEL 230

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++   + ++I I+++ +A GE+ I++    +FG+++ +I   +
Sbjct: 231 NQLANDPLEILISDKVVALGEVVIVD---GNFGIQITQIGTKK 270


>gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
          Length = 287

 Score = 91.1 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E I +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEETTKSAAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
 gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
          Length = 269

 Score = 91.1 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 60/96 (62%), Gaps = 3/96 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           ++I + IS  S+ + ++     D++M++ +++++ +G   M + +++++  G ++ LD+ 
Sbjct: 164 NDIKDKISESSHELNKEIPSQLDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQL 223

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
             E +DI I ++KI +GE+ I++    +FG+++  I
Sbjct: 224 ANEPLDILIEDKKIGEGEVVIVD---GNFGIQITSI 256


>gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179]
 gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC
           49179]
          Length = 139

 Score = 91.1 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
            +  K        P   +    LE+  +++  ++++ V     LGS  + +  ++   +G
Sbjct: 25  PVNPKIKKQPTLNPREIELTTYLEELIEDYKGLLDMEVTFMAELGSTSIPLGEVLRFERG 84

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            VI L K  GESVD  +N + I KGE+ + E+   +  +R+ E+L++
Sbjct: 85  SVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK---NLAIRLNEVLDS 128


>gi|308273527|emb|CBX30129.1| hypothetical protein N47_D29380 [uncultured Desulfobacterium sp.]
          Length = 71

 Score = 91.1 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + LG   M I++L+ L +G +I L+K++G+ +DI I ++ IAKGE+ ++++    FG+R+
Sbjct: 1   MELGQTRMLINDLLQLGQGSIIELNKQIGDPIDIFICDKLIAKGEVVVVDD---KFGIRL 57

Query: 141 IEILNA 146
             I++ 
Sbjct: 58  TNIISP 63


>gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
 gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
          Length = 123

 Score = 91.1 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 9/121 (7%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
           + +P+ D +  S  N++ + + ++  D+  E   +           +      IPV + +
Sbjct: 1   MSSPISDNDFDSLINDAGLNLDESGSDSAPEQAPTALPQ------QDLSFFGKIPVNVTL 54

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            + S  + +  L+++  G VI LDK  GE +D+ +N    AK E+ +M     ++G+R++
Sbjct: 55  EVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMN---GNYGLRIV 111

Query: 142 E 142
           E
Sbjct: 112 E 112


>gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449]
 gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC
           51449]
          Length = 117

 Score = 91.1 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           D   I      +    LE    N+  ++++       LGS  + +  ++   KG +I L 
Sbjct: 8   DKQRIHSAKEIELATYLEDMMKNYTGLLDMEALFNAELGSTKIPLGEILRFEKGSIIDLG 67

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  GESV+I IN + I KGE+ + E    +  +R+ EIL++
Sbjct: 68  KPAGESVEIFINGRVIGKGEVMVYE---RNLAIRINEILDS 105


>gi|83944188|ref|ZP_00956644.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
           EE-36]
 gi|83845055|gb|EAP82936.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
           EE-36]
          Length = 114

 Score = 91.1 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 4/109 (3%)

Query: 37  NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
           N +   Q +  DN ++   + +   L+    + D I  + + ++++LG   M IS L+NL
Sbjct: 4   NDQDKTQADLTDNNAQDAETKAPAGLDG--KSLDAIFGVKLDVRVVLGRSRMPISELLNL 61

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +KG VI LD+RVGE VDI IN++ +A+G++  ++ D    GV + EI+ 
Sbjct: 62  TKGSVIELDRRVGEPVDIMINDRMVARGDLVRVQGDS--LGVALREIVK 108


>gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51]
          Length = 287

 Score = 90.7 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E I +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|260779322|ref|ZP_05888214.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605486|gb|EEX31781.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 122

 Score = 90.7 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           +  +     +     NIPV + + + S  + + +L+   +G VI LDK  GE +D+ +N 
Sbjct: 31  DAAVPTPERDLSFFKNIPVTVTLEVASKDIALGDLMKAGEGSVIELDKLNGEPLDVKVNG 90

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
             +   E+ ++ E    +G+R+I+I+++
Sbjct: 91  SLMGHAEVVVVNE---KYGLRLIDIVDS 115


>gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
 gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
          Length = 118

 Score = 90.7 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
               S    +  K   +      +PV + + L S  M +  L  + +GDV+ LD+ VGE 
Sbjct: 20  AEEQSHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEP 79

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +DI +N   + +GE+  +      +GVR++E+
Sbjct: 80  LDIRVNGALLGRGEVVEVN---GRYGVRLLEV 108


>gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein
           [uncultured bacterium]
          Length = 117

 Score = 90.7 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                +S    + +  +PV++  +LG+  +Q+S ++ L +G V+ LD+ VGE VDI  NN
Sbjct: 30  PKKAARSDGRMEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANN 89

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + IA+GE+ ++E+      +++ +I+ +
Sbjct: 90  RLIARGEVVVVED---RLAIQITDIIRS 114


>gi|209966468|ref|YP_002299383.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|209959934|gb|ACJ00571.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 105

 Score = 90.7 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 57/91 (62%), Gaps = 3/91 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            +++S+      T   + I+++PV++ + LG   M+IS L+ L   DV+ L++ VGE VD
Sbjct: 2   AATNSDAAESGETPERNSILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVD 61

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           + +N++ +A+GE+ +++      G+ ++E++
Sbjct: 62  LFVNDRLVARGELVVVD---GRLGLTIVELM 89


>gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
 gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
          Length = 124

 Score = 90.7 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           I    S    +   +   N +    +PV++ + L S  M +  L  + +GDVI LD+ VG
Sbjct: 23  IFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVG 82

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           E +DI +N   + +GE+    E    +GVR++EI
Sbjct: 83  EPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 113


>gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16]
          Length = 287

 Score = 90.7 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E I +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas
           ingrahamii 37]
 gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas
           ingrahamii 37]
          Length = 120

 Score = 90.7 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 24  NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83
           NPL +   +    +       NDV++IS+   S S     K   +   + +IPV + + +
Sbjct: 2   NPLDNDLDNEFDLDDMDFDLINDVNDISDAPPSSSA----KKAKSLSFLNDIPVHVTVEV 57

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G+  + +  L+ +    V+ L K  G+++DI +N +  A GE+ +      H+GV++ +I
Sbjct: 58  GAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVAN---GHYGVKITDI 114

Query: 144 LNA 146
           +N 
Sbjct: 115 VNK 117


>gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32]
          Length = 287

 Score = 90.7 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E I +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
 gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
          Length = 287

 Score = 90.7 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E + +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEETTKSATEEVKTKDESLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
 gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
          Length = 287

 Score = 90.3 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E + +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30]
          Length = 287

 Score = 90.3 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E + +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
           12198]
 gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
           12198]
          Length = 112

 Score = 90.3 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
              +    LE    +++ +++I       LGS  + I  ++N  +G VI L K  GESVD
Sbjct: 12  REQELTTYLEDMIQSYEGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVD 71

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + IN + + +GE+ + E+   +  +R+ EIL++
Sbjct: 72  VFINTRIVGRGEVMVYEK---NLAIRLNEILDS 101


>gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83]
          Length = 287

 Score = 90.3 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E + +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1]
 gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1]
          Length = 287

 Score = 90.3 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 59/100 (59%), Gaps = 3/100 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +E + +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ 
Sbjct: 183 QSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
 gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
          Length = 122

 Score = 90.3 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
            N +     +     NIPV + + + S  + + +L+   +G VI LDK  GE +D+ +N 
Sbjct: 31  ENSVAMPERDLSFFKNIPVTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNG 90

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
             +   E+ ++ E    +G+R+I+++++
Sbjct: 91  SLMGHAEVVVVNE---KYGLRLIDVVDS 115


>gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826]
 gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826]
          Length = 284

 Score = 90.3 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
                 +   N  LIM++ + M++ +GS  M + +++ +  G VI L++   + ++I I 
Sbjct: 191 KGEFSAEEMRNIGLIMDVRLPMRVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILIG 250

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++ IA GE+ I++    +FG+++ +I + +
Sbjct: 251 DKVIALGEVVIID---GNFGIQITQIGSKR 277


>gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A]
          Length = 287

 Score = 90.3 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E + +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEEKTKSTTEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277]
 gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277]
          Length = 277

 Score = 89.9 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
            D    ++  +    ++  +   N  LIM++ + + + +GS  M + +++ +  G VI L
Sbjct: 171 KDHKEPAQQATPAKGDLSIEEMRNIGLIMDVCLPLHVRIGSKRMLLKDVLTMDIGSVIEL 230

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++   + ++I I+++ +A GE+ I++    +FG+++ +I   +
Sbjct: 231 NQLANDPLEILISDKVVALGEVVIVD---GNFGIQITQIGTKK 270


>gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57]
          Length = 287

 Score = 89.9 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +    ++    + +E + +   ++      N  +++++ + +++ +G   M + ++V+
Sbjct: 171 EKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
 gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
          Length = 287

 Score = 89.9 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 59/100 (59%), Gaps = 3/100 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +E I +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ 
Sbjct: 183 KSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
 gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
          Length = 284

 Score = 89.9 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           N +E         N       +   +      N  +++++ +++++ +G   M + +++ 
Sbjct: 169 NTTEDSDNVALDANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVIA 228

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ L++   +S+++ ++++ IAKGE+ I++    +FG+++ EI   +
Sbjct: 229 MDIGSVVELNQLANDSLEVLVDDKVIAKGEVVIVD---GNFGIQITEIAPKK 277


>gi|260767961|ref|ZP_05876895.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260615991|gb|EEX41176.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315179665|gb|ADT86579.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           furnissii NCTC 11218]
          Length = 122

 Score = 89.5 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            ++++      D+   +E+   +     NIPV + + + S  + +  L+   +G VI LD
Sbjct: 21  HLEDLEPETEGDTAPNVER---DLSFFRNIPVTVTLEVASKAIALGELMKAGEGSVIELD 77

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  GE +D+ +N   +   E+ ++ +    +G+R+I++L++
Sbjct: 78  KLNGEPLDVKVNGALLGHAEVVVVND---KYGLRLIDVLDS 115


>gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
 gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
          Length = 128

 Score = 89.5 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           D   +  P   +  + LE    N++ ++++ V     LG+  + ++ ++   KG +I L 
Sbjct: 15  DKKQVHTPREIELASYLEDMMANYEGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQ 74

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  G SV+I +N++ + KGE+ + E    +  +R+ EIL++
Sbjct: 75  KPAGASVEIFVNDRVVGKGEVMVYE---RNLAIRINEILDS 112


>gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 122

 Score = 89.5 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IP+++ I +GS  + +  ++ L    ++ LD+ + E VDI IN + +AKG++  + E  
Sbjct: 44  DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIRE-- 101

Query: 134 THFGVRVIEILNAQ 147
            ++G+++ +I+  +
Sbjct: 102 -NYGIKITQIITPE 114


>gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS155]
 gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS155]
          Length = 118

 Score = 89.5 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S+ S     K   N +    +PV++ + L S  M +  L  + +GDVI LD+ VGE +DI
Sbjct: 22  SAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDI 81

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +N   + +GE+    E    +GVR++EI
Sbjct: 82  RVNGALLGRGEVV---EVAGRYGVRLLEI 107


>gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
          Length = 118

 Score = 89.5 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S+ S     K   N +    +PV++ + L S  M +  L  + +GDVI LD+ VGE +DI
Sbjct: 22  SAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDI 81

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +N   + +GE+    E    +GVR++EI
Sbjct: 82  RVNGALLGRGEVV---EVAGRYGVRLLEI 107


>gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464]
          Length = 290

 Score = 89.5 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + +E + +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 187 STAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282


>gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 121

 Score = 89.5 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E                      IPV + + + S  + +  L+   +G VI LDK  GE 
Sbjct: 23  EQFDESPQLDTPNPQRGLSFFKKIPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEP 82

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +D+ +N   +   E+ ++ E    +G+R+I+++++
Sbjct: 83  LDVKVNGSLMGHAEVVVINE---KYGLRLIDVVDS 114


>gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27]
 gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27]
          Length = 287

 Score = 89.5 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 59/100 (59%), Gaps = 3/100 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +E I +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ 
Sbjct: 183 QSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695]
 gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695]
          Length = 287

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            ++E + +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 184 GVAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 290

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + +E I +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 187 STAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282


>gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
              +E + +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ 
Sbjct: 183 QGAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38]
 gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38]
          Length = 287

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 59/100 (59%), Gaps = 3/100 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            + +E I +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ 
Sbjct: 183 QSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
 gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
          Length = 288

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + +E + +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 185 SATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 244

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 245 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 280


>gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 103

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           ++D   +  K    F+ +++I V     LG+  + I  L+ L KG VI L+K  GESV++
Sbjct: 3   AADQEYVERKLLSGFENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVEL 62

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            INN+   KGE+ + E+   +  +R+ EIL+++
Sbjct: 63  YINNKIFGKGEVMVYEK---NLAIRINEILDSK 92


>gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
 gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
          Length = 84

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                D+++++ VK+ + LGS  + +  ++ LS G V+ L +   + V + +N+Q +A G
Sbjct: 2   EEKALDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYG 61

Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147
           E+ ++E+   +FG+++ E++ ++
Sbjct: 62  EVVVVED---NFGIKITELVGSE 81


>gi|89068715|ref|ZP_01156101.1| Flagellar motor switch protein FliN [Oceanicola granulosus
           HTCC2516]
 gi|89045678|gb|EAR51740.1| Flagellar motor switch protein FliN [Oceanicola granulosus
           HTCC2516]
          Length = 132

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-SNNILEKSTDNFDLIMNIPVKMQ 80
            D P  DT  ++P    + L+ + +       + +     +      + + ++N+ +++ 
Sbjct: 6   TDKPSPDT--AAPGQPDDTLLPELEAPEEQTVLENMVGEQVNGDGGRSIEAMLNVGLEVN 63

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           I+LG   M IS L+ LS+G +I LDKR+GE VD+ ++++ +A+G++  + ++    GV +
Sbjct: 64  IVLGRSRMPISQLLKLSRGSIIELDKRIGEPVDMIVSDRLVARGDLVRVGDN--RVGVTL 121

Query: 141 IEILN 145
            EI+ 
Sbjct: 122 TEIVK 126


>gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7]
          Length = 290

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
                 +E + +   ++      N  +++++ + +++ +G   M + ++V++  G V+ L
Sbjct: 183 KSTTEATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVEL 242

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           D+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 243 DQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282


>gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 293

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNI----LEKSTDNFDLIMNIPVKMQIILGSCCMQI 90
           T         N+  +   P    SN I     ++S+ N  L+ +I +K+ + LG+    +
Sbjct: 171 TGKEADAASNNESSSQGFPSLPTSNGIDSLLSDESSKNLKLLFDIKLKLSVRLGTKLFLL 230

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +++    G++I L++ V E +DI +N  KI +GE  I+E     FG+++  I
Sbjct: 231 KDILKWDIGEIIELEQMVNEPLDILVNGIKIGEGEAVIVE---GKFGLKIKNI 280


>gi|307747018|gb|ADN90288.1| Hypothetical protein CJM1_0060 [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 123

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + +   +L +   N +LIM++ + +++ +G+  M + +++ +  G V+ L++   + ++I
Sbjct: 27  AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 86

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            I +++IA GE+ I++    +FGV++ EI + +
Sbjct: 87  LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 116


>gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20]
          Length = 290

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + +E + +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 187 SAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282


>gi|163744332|ref|ZP_02151692.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
 gi|161381150|gb|EDQ05559.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
          Length = 154

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
            ++   D P  D   ++ +   +       +D  +E   +      E      + ++N+ 
Sbjct: 25  PKTTEQDQPRADAFGNTASLGGDDAGVFPQLD--TEDSRNALAPRPEAGGAGINAMLNVG 82

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + +QI+LG   M IS L+ L++G ++ L++++G  VD+ ++++ +A+G++  + ED    
Sbjct: 83  LDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVSDRLVARGDLVKVGED--RL 140

Query: 137 GVRVIEILN 145
           GV + +I+ 
Sbjct: 141 GVSLTQIVK 149


>gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
 gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
          Length = 118

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + +   ++PV++ + L S  + +  L+ L +GD++ LD+ VGE +D+ +N   + +GE+ 
Sbjct: 36  DMNFFSHLPVQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVV 95

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
            +      +GVR++E+  ++
Sbjct: 96  EVN---GRYGVRLLEVEASK 112


>gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52]
          Length = 290

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + +E + +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 187 SATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282


>gi|84502360|ref|ZP_01000496.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
 gi|84389172|gb|EAQ01969.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
          Length = 128

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 2/78 (2%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           N D ++N+ + +QI+LG   M IS L+ LS+G +I LDK++GE VDI IN++ +A+G++ 
Sbjct: 47  NIDAMLNVGLNIQIVLGRTRMPISQLLKLSRGSIIELDKKIGEPVDIVINDRLVARGDLV 106

Query: 128 IMEEDDTHFGVRVIEILN 145
            ++E+    GV +IEI+ 
Sbjct: 107 KLDEE--RVGVSLIEIVK 122


>gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
 gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
          Length = 118

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
             K   +      +PV++ + L S  M +  L  + +GDV+ LD+ VGE +DI +N   +
Sbjct: 30  SPKPVKDISFFHQLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALL 89

Query: 122 AKGEITIMEEDDTHFGVRVIEI 143
            +GE+  +      +GVR++E+
Sbjct: 90  GRGEVVEVN---GRYGVRLLEV 108


>gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
 gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
 gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
 gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
          Length = 287

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 61/110 (55%), Gaps = 3/110 (2%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +    ++    +  E I +   ++      N  +++++ + +++ +G   M + ++V++ 
Sbjct: 173 THQEEKEEATKSTIEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMD 232

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 233 IGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279


>gi|219681459|ref|YP_002467844.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682015|ref|YP_002468399.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471134|ref|ZP_05635133.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621748|gb|ACL29904.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624302|gb|ACL30457.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085823|gb|ADP65905.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086396|gb|ADP66477.1| flagellar motor switch protein FliN [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311086975|gb|ADP67055.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087552|gb|ADP67631.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 133

 Score = 88.8 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISN 92
           ++ + +    DVD    P  +  N+ L+ + D  D    I+N+PV + + LG+  ++I +
Sbjct: 15  DSEKKIPTDQDVDKNLLPQENSKNSTLDNTIDVVDSKKTILNVPVNITVELGTSRIKIKD 74

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +  SKG ++ L++ + E ++I +N   IA GEI ++EE    +G+R+  I N+
Sbjct: 75  FLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125


>gi|149189861|ref|ZP_01868141.1| flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148836347|gb|EDL53304.1| flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 122

 Score = 88.4 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +S  +     NIPV + + + S  + + +L++  +G +I LDK  GE +D+ +N   +  
Sbjct: 36  QSERDISFFKNIPVTVTLEVASKEVALGDLMSAGEGSIIELDKLNGEPLDVKVNGSLMGH 95

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
            E+ ++ E    +G+R+I+++++
Sbjct: 96  AEVVVVNE---KYGLRLIDVVDS 115


>gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori
           Gambia94/24]
          Length = 285

 Score = 88.4 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + +E   +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 242 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 277


>gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM
           1251]
 gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251]
          Length = 283

 Score = 88.4 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S + ++      N  LIM++ + +++ +G   M + +++N+  G VI L++   + +DI 
Sbjct: 187 SATVSLSSDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDIL 246

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +++  IA+GE+ I++    +FGV++  I   +
Sbjct: 247 VDDNVIAEGEVVIVD---GNFGVQITSIGTKR 275


>gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99]
 gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
          Length = 285

 Score = 88.4 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + +E   +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 242 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 277


>gi|15616703|ref|NP_239915.1| flagellar motor switch protein FliN [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386788|sp|P57183|FLIN_BUCAI RecName: Full=Flagellar motor switch protein FliN
 gi|25403545|pir||A84939 flagellar motor switch protein fliN [imported] - Buchnera sp.
           (strain APS)
 gi|10038766|dbj|BAB12801.1| flagellar motor switch protein fliN [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 133

 Score = 88.4 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISN 92
           ++ + +    DVD    P  +  N+ L+ + D  D    I+N+PV + + LG+  ++I +
Sbjct: 15  DSEKKIPTDQDVDKNLLPQENSKNSTLDNTIDIVDSKKTILNVPVNITVELGTSRIKIKD 74

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +  SKG ++ L++ + E ++I +N   IA GEI ++EE    +G+R+  I N+
Sbjct: 75  FLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125


>gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4]
 gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4]
          Length = 122

 Score = 88.4 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           +  +     +IPV + + + S  + + +L+   +G VI LDK  GE +D+ +N   + + 
Sbjct: 37  AERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQA 96

Query: 125 EITIMEEDDTHFGVRVIEILNA 146
           E+ ++ +    +G+R+IE+ ++
Sbjct: 97  EVVVIND---KYGLRLIEVHDS 115


>gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908]
 gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 285

 Score = 88.0 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + +E   +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 242 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 277


>gi|90577376|ref|ZP_01233187.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90440462|gb|EAS65642.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 121

 Score = 88.0 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           E            S  +      IPV + + + S  + +  L+   +G VI LDK  GE 
Sbjct: 23  EQFEETPQLDSSMSQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEP 82

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +D+ +N   +   E+ ++ E    +G+R+I+++ +
Sbjct: 83  LDVKVNGSLMGHAEVVVINE---KYGLRLIDVVES 114


>gi|89072283|ref|ZP_01158862.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89051815|gb|EAR57267.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 121

 Score = 88.0 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           S  +      IPV + + + S  + +  L+   +G VI LDK  GE +D+ +N   +   
Sbjct: 36  SQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHA 95

Query: 125 EITIMEEDDTHFGVRVIEILNA 146
           E+ ++ E    +G+R+I+++ +
Sbjct: 96  EVVVINE---KYGLRLIDVVES 114


>gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01]
          Length = 122

 Score = 87.6 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            +++     +     + E+   +     +IPV + + + S  + + +L+   +G VI LD
Sbjct: 21  QLEDFETEQAFAPEPVAER---DLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELD 77

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  GE +D+ +N   + + E+ ++ +    +G+R+I++ ++
Sbjct: 78  KLNGEPLDVKVNGSLMGQAEVVVIND---KYGLRLIDVHDS 115


>gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 276

 Score = 87.6 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           + +   N  LIM++ + +++ +GS  M + +++++  G VI L++   + +++ I ++++
Sbjct: 187 ITEEIKNIGLIMDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELNQLANDPLEVLIGDKQV 246

Query: 122 AKGEITIMEEDDTHFGVRVIEILNAQ 147
           A GE+ I++    +FGV++ EI   +
Sbjct: 247 ALGEVVIVD---GNFGVQITEIGTKK 269


>gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 192

 Score = 87.6 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
            N+        +L++++P+ + + +GS  M I  +V LS   V+ LD+ + E +D+ +N 
Sbjct: 94  QNLPADIEKKLNLLLDLPITITVEIGSKVMTIEEIVKLSPSSVVDLDRFITEPIDLKVNG 153

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
             +AKGE+  +E+    F +++ EIL  +
Sbjct: 154 VLVAKGELYQVED---QFAIKIKEILTKE 179


>gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
 gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
 gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
 gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20]
 gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464]
 gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16]
 gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30]
 gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57]
 gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83]
          Length = 123

 Score = 87.6 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
           S T ++++ I + + +  S+    + +  LE+   ++  ++++ +     LGS  + +  
Sbjct: 2   SETESNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++   KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 62  ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470]
 gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470]
 gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51]
 gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A]
 gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32]
          Length = 123

 Score = 87.6 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
           S T ++++ I + + +  ++    + +  LE+   ++  ++++ +     LGS  + +  
Sbjct: 2   SETESNKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++   KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 62  ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|327478783|gb|AEA82093.1| flagellar motor switch protein FliN [Pseudomonas stutzeri DSM 4166]
          Length = 123

 Score = 87.6 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 35  TNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
            N  E LI + D+  +  +  +  +         +      IPV + + + S  + +  L
Sbjct: 7   DNEFENLINEGDLSLDAVDEPAVPAPAAAPAPRQDLSFFGKIPVNVTLEVASAEISLKEL 66

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +      VI LDK  GE +D+ +N    AK E+ +M     ++G+R++E+
Sbjct: 67  MECDTSSVIVLDKLAGEPLDVKVNGTLFAKAEVVVMN---GNYGLRIVEL 113


>gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12]
 gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12]
          Length = 287

 Score = 87.6 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 202 RNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEV 261

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            I++    +FG+++ +I   +
Sbjct: 262 VIVD---GNFGIQITDIGTKK 279


>gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 101

 Score = 87.2 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           SD           +D +++I V+    LG+  + +  L+ L  G VI L+K  GESV++ 
Sbjct: 2   SDEELSPNGLFHGYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELY 61

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           INN+   KGE+ + E+   +  +R+ EIL+++
Sbjct: 62  INNRIFGKGEVVVYEK---NLAIRINEILDSK 90


>gi|296535009|ref|ZP_06897289.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
 gi|296264664|gb|EFH11009.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
           49957]
          Length = 93

 Score = 87.2 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 51/75 (68%), Gaps = 2/75 (2%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           IM+IPV +Q++LG+  + ++ L NLS+G VI  DK+VGE +D+  N + IA+GEI I ++
Sbjct: 19  IMDIPVNVQVVLGNKRLPMAALFNLSRGSVIEFDKKVGEPIDLMANERLIARGEIQITDD 78

Query: 132 DDTHFGVRVIEILNA 146
                 + + EI+++
Sbjct: 79  --GRLSISITEIVSS 91


>gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92]
 gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92]
          Length = 105

 Score = 87.2 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            ++D +M+I V     LG+  + I+ L+    G VI L+K  GESV++ INN+   KGE+
Sbjct: 17  KSYDELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEV 76

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            + E+   +  +R+ EIL+++
Sbjct: 77  MVYEK---NLAIRINEILDSK 94


>gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           harveyi ATCC BAA-1116]
 gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116]
          Length = 122

 Score = 87.2 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            +++     +     + E+   +     +IPV + + + S  + + +L+   +G VI LD
Sbjct: 21  QLEDFETEQAFAPEPVAER---DLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELD 77

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  GE +D+ +N   + + E+ ++ +    +G+R+I + ++
Sbjct: 78  KLNGEPLDVKVNGSLMGQAEVVVIND---KYGLRLINVHDS 115


>gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826]
 gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826]
          Length = 105

 Score = 87.2 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            ++D +M+I V     LG+  + I+ L+    G VI L+K  GESV++ INN+   KGE+
Sbjct: 17  KSYDELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEV 76

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            + E+   +  +R+ EIL+++
Sbjct: 77  MVYEK---NLAIRINEILDSK 94


>gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           sp. Ex25]
 gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
 gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           sp. Ex25]
 gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
          Length = 123

 Score = 87.2 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
           +            +  +D         S        +  +     +IPV + + + S  +
Sbjct: 2   SEAPETNAFDAEELNFDDFQLEDFEAESTLQQEPATAERDLSFFKSIPVTVTLEVASKEI 61

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + +L+   +G VI L+K  GE +D+ +N   +   E+ ++ +    +G+R+I++ ++
Sbjct: 62  PLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVHDS 116


>gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818]
 gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
           18818]
 gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
           18818]
          Length = 116

 Score = 86.8 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           D   I      +    LE    N+  ++++ V     LG+  + +  ++   KG +I L 
Sbjct: 8   DKQRIHSAKEIELATYLEDMMKNYTGLLDMEVIFNAELGNTKIALGEILRFEKGSIIDLG 67

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  GES++  IN + I KGE+ + E    +  +R+ EIL++
Sbjct: 68  KPAGESIETFINGRVIGKGEVMVYE---RNLAIRINEILDS 105


>gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1]
 gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75]
          Length = 123

 Score = 86.8 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
           S T  +++ I + + +  ++    + +  LE+   ++  ++++ +     LGS  + +  
Sbjct: 2   SETEANKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++   KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 62  ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|23013050|ref|ZP_00053002.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 94

 Score = 86.8 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
              D+ N      DN + + ++ V++  +LG+  + I+ L+ L +G V+ LD++V + VD
Sbjct: 2   ADDDAINAALGIGDNREAVYDVSVELSAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVD 61

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           + +N +++ + E+ ++E+   H  V + E+L 
Sbjct: 62  LYVNRKRVCRAEVVVVED---HLAVTITEVLK 90


>gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36]
 gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36]
          Length = 122

 Score = 86.8 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +    +     NIP+ + + + S  + I +L+ LS G VI LDK   E +D+ +N Q +A
Sbjct: 35  KPLKKDLSFFHNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLA 94

Query: 123 KGEITIMEEDDTHFGVRVIEILN 145
             E+ ++      +GV++I++++
Sbjct: 95  TAEVVVVN---GKYGVKLIDVVD 114


>gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695]
 gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695]
          Length = 123

 Score = 86.8 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
           S T  +++ + + + +  ++    + +  LE+   ++  ++++ +     LGS  + +  
Sbjct: 2   SETEANKLKVAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++   KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 62  ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|147678413|ref|YP_001212628.1| flagellar motor switch/type III secretory pathway protein
           [Pelotomaculum thermopropionicum SI]
 gi|146274510|dbj|BAF60259.1| flagellar motor switch/type III secretory pathway protein
           [Pelotomaculum thermopropionicum SI]
          Length = 126

 Score = 86.8 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           +       D+  +  P  +    + ++   +   + ++ +++ + LG   M++  ++ L 
Sbjct: 12  ARASSSDADIKKVQFPPLTPVKGM-DRVKTSMSHLEDVQIEISVELGQTVMKVREVLGLE 70

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +G VI LDK +GE+V++ +N Q+ A+GE+ ++ +    FGVR+  I
Sbjct: 71  QGSVIRLDKAIGEAVEVVLNEQRFARGEVVVINDS---FGVRITSI 113


>gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 286

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
            ++  +   N +LI ++ + +++ +GS  M + +++++  G VI LD+   + ++I + +
Sbjct: 194 PSMSPEEISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEILVGD 253

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + IA GE+ I++    +FGV++ EI   +
Sbjct: 254 KVIAMGEVVIVD---GNFGVQIGEIGTKR 279


>gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 101

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           SD           +D +++I V+    LG+  + +  L+ L  G VI L+K  GESV++ 
Sbjct: 2   SDEELSPNGLFHGYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELY 61

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           INN+   KGE+ + E+   +  +R+ EIL+++
Sbjct: 62  INNRIFGKGEVMVYEK---NLAIRINEILDSK 90


>gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180]
 gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180]
          Length = 123

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T ++++ I + + +  S+    + +  LE+   ++  ++++ +     LGS  + +  ++
Sbjct: 4   TESNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 64  RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908]
 gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24]
 gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 123

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T ++++ I + + +  ++    + +  LE+   ++  ++++ +     LGS  + +  ++
Sbjct: 4   TESNKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 64  RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
 gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
          Length = 122

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            +++     +     + E+   +     +IPV + + + S  + + +L+   +G VI LD
Sbjct: 21  QLEDFETEQAFAPEPVAER---DLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELD 77

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           K  GE +D+ +N   + + E+ ++ +    +G+R+I + ++
Sbjct: 78  KLNGEPLDVKVNGSLMGQAEVVVIND---KYGLRLINVHDS 115


>gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52]
          Length = 123

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T ++++ I + + +  ++    + +  LE+   ++  ++++ +     LGS  + +  ++
Sbjct: 4   TESNKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 64  RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str.
           Sheeba]
 gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 283

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            N  +++++ + +++ +G   M + ++V++  G V+ LD+ V + ++I ++++ IAKGE+
Sbjct: 198 RNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEV 257

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            I++    +FG+++ +I   +
Sbjct: 258 VIVD---GNFGIQITDIGTKK 275


>gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
 gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1]
          Length = 123

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T ++++ I + + +  S+    + +  LE+   ++  ++++ +     LGS  + +  ++
Sbjct: 4   TESNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 64  RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7]
          Length = 123

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T  +++ I + + +  S+    + +  LE+   ++  ++++ +     LGS  + +  ++
Sbjct: 4   TEPNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 64  RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
            P+  D   I +        +++I + + + +GS    + ++++  +G V+ LDK+ G  
Sbjct: 226 TPLQYDREQIGDDKKK----LLDITLDVSVRIGSTVCSVKDVLSFKEGQVLVLDKQAGSP 281

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            D+  N + I +G++ +  +   HFG R+IEI+  +
Sbjct: 282 ADVVANGELIGRGDVLVSGD---HFGARIIEIVGKR 314


>gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
          Length = 123

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           +  +D         +        +  +     +IPV + + + S  + + +L+   +G V
Sbjct: 15  LNFDDFQLEDFEAETTRQPEPVAAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTV 74

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I L+K  GE +D+ +N   +   E+ ++ +    +G+R+I++ ++
Sbjct: 75  IELEKLNGEPLDVKVNGSLLGHAEVVVVND---KYGLRLIDVHDS 116


>gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99]
 gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27]
 gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12]
 gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
 gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38]
 gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
 gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
 gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27]
 gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12]
 gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
 gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38]
 gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
 gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7]
          Length = 123

 Score = 86.1 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           + +  LE+   ++  ++++ +     LGS  + +  ++   KG VI L K  GESVD  +
Sbjct: 26  ELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFV 85

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N + I KGE+ + E    +  +R+ EIL++
Sbjct: 86  NGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 123

 Score = 86.1 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           T  +++ I + + +  ++    + +  LE+   ++  ++++ +     LGS  + +  ++
Sbjct: 4   TEANQLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIIFSAELGSTQIPLLQIL 63

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
              KG VI L K  GESVD  +N + I KGE+ + E    +  +R+ EIL++
Sbjct: 64  RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112


>gi|327254532|gb|EGE66148.1| surface presentation of antigens family protein [Escherichia coli
           STEC_7v]
          Length = 123

 Score = 86.1 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 60/100 (60%), Gaps = 5/100 (5%)

Query: 45  NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +DV  +++P  +D+    + ++ +D+  L+  IPV + + + S  + +++L+N+    VI
Sbjct: 16  DDVAPVTKPADADTLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 76  ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112


>gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 123

 Score = 86.1 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCM 88
           S     +    ++ + D+         + + ++      +     +IPV + + + S  +
Sbjct: 2   SEALETNAFDAEELNFDDFQLEDFEAEDTLQQEPATAERDLSFFKSIPVTVTLEVASKEI 61

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + +L+   +G VI L+K  GE +D+ +N   +   E+ ++ +    +G+R+I++ ++
Sbjct: 62  PLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVHDS 116


>gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
 gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
          Length = 289

 Score = 85.7 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
           +  +     E  +Q      +S    S +N+ +  ++ N +L+ N+ +K+ + LG+  + 
Sbjct: 167 SAITGIYQEEPKVQVTPSTPVSNNTGSSNNSSVTPTSKNLELLYNVKLKLSVRLGTKIVL 226

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + +++    G++I L++ V E ++I IN  KI +GE  I+E     FG+++  I+N 
Sbjct: 227 LKDILRWDVGEIIELEQMVNEPLEILINGVKIGEGEAVIVE---GKFGLKIKRIINE 280


>gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH]
 gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH]
          Length = 270

 Score = 85.7 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           L+    N +++++I +++++ +GS  M + +++ +  G ++ L++   E +DI I ++KI
Sbjct: 180 LKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAKEPLDILIEDKKI 239

Query: 122 AKGEITIMEEDDTHFGVRVIEILNAQ 147
            +GE+ I++    +FG+++  I + +
Sbjct: 240 GEGEVVIVD---GNFGIQITSIGSRE 262


>gi|307720639|ref|YP_003891779.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
 gi|306978732|gb|ADN08767.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
          Length = 294

 Score = 85.3 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 65/125 (52%), Gaps = 9/125 (7%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE------KSTDNFDLIMNIPVKMQII 82
            NV  P++ S    +  +  + +   S  S+N  E      +   N  LIM++ + +++ 
Sbjct: 165 KNVLFPSDTSSESAEIEENRSTAAASSHISSNCEEDITLSNEEMKNIALIMDVKLPVRVR 224

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           +G   M + +++N+  G VI L++   + ++I ++N  +A+GE+ I++    +FG++V  
Sbjct: 225 IGKKRMLLKDVLNMDIGSVIELNQLANDPLEILVDNHVVAQGEVVIVD---GNFGIQVTT 281

Query: 143 ILNAQ 147
           I   +
Sbjct: 282 IGTKK 286


>gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 102

 Score = 85.3 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           NI      +++ I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ IN +
Sbjct: 8   NIYHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              KGE+ + E+   +  +R+ EIL+++
Sbjct: 68  IFGKGEVMVYEK---NLAIRINEILDSK 92


>gi|54307254|ref|YP_128274.1| putative flagellar motor switch protein [Photobacterium profundum
           SS9]
 gi|46911674|emb|CAG18472.1| putative flagellar motor switch protein [Photobacterium profundum
           SS9]
          Length = 117

 Score = 85.3 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                 S+ + + I NIPV + + + S  + + +L+N+  G VI LDK  GE++D+ +N 
Sbjct: 24  QAPEATSSQDMNFIRNIPVNLTLEVASTELMVGDLMNIGLGTVIELDKISGEAMDVKVNG 83

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145
             +   E+ I+      +G+R++ +++
Sbjct: 84  TLLGHAEVVIVN---NKYGLRLVSVVD 107


>gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
 gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
          Length = 118

 Score = 85.3 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
           M  +  +++ +   +      + E+     ++D +M+I V     LG+  + +  L+ L 
Sbjct: 1   MSEELQEINAVETALQGVQEMLQERGGLFKSYDELMDIGVDFISELGTTTISVKQLLKLE 60

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            G VI L+K  GESV++ INN+   KGE+ + E+   +  +R+ EIL+++
Sbjct: 61  VGSVIDLEKPAGESVELFINNRIFGKGEVMVYEK---NLAIRINEILDSK 107


>gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 127

 Score = 85.3 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
               V  +  P    +          + + + ++ V +   LG   M +   ++L +G V
Sbjct: 17  PGPTVKKVQFPRFEQAGTPGMPGVRISLEYLDDVEVDVSAELGQTAMTVREFLSLHEGSV 76

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           I LD+  GE++D+ +N  K+A+GE+ ++ +    F +R+  I + Q
Sbjct: 77  IGLDRAAGETIDVVVNGVKLARGEVLVINDL---FVLRIHSIAHPQ 119


>gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630]
 gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-63q42]
 gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC
           43255]
 gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile]
          Length = 124

 Score = 85.3 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 66/113 (58%), Gaps = 3/113 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           ++    ++  + V++  +     + ++ E + +N   I+++ +++ +++G   M + +++
Sbjct: 8   SDEEAKMLLNDKVESEVDGDDELALDVSEVNRNNIQRILDLKLELSVVIGRTKMTLRDIL 67

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           NL KG +I LD    + V+I I+N+ +A G++ +++    +FGV++  I++ +
Sbjct: 68  NLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVVD---LNFGVKITSIVSEE 117


>gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
 gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
          Length = 118

 Score = 85.3 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            ++D +M+I V     LG+  + +  L+ L  G VI L+K  GESV++ INN+   KGE+
Sbjct: 30  KSYDELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEV 89

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            + E+   +  +R+ EIL+++
Sbjct: 90  MVYEK---NLAIRINEILDSK 107


>gi|157147124|ref|YP_001454443.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
 gi|157084329|gb|ABV14007.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
          Length = 132

 Score = 85.3 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 41  LIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           + Q++ V+ NI   +  ++ N          L   IPV + + + S  + ++ L++++  
Sbjct: 22  MTQEDTVEGNIRLDLQPETRNTAMTDIRKMALFSRIPVTLTLEVASVNISLAELMSVNSD 81

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            V+ LDK  GE +DI +N     K E+ ++ +    +G+R+IE
Sbjct: 82  SVVELDKMAGEPLDIKVNGILFGKAEVVVLND---KYGLRIIE 121


>gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
 gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
          Length = 467

 Score = 84.9 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 16/119 (13%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           ++ + ++P  +    ++   +D++S+P  S             DL+ ++P+++ + L   
Sbjct: 365 EEEDFTNPELDVPPELEGAALDDVSKPDGS-------------DLLGDVPLQIAVELARV 411

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            +    +V L  G V+ L++  GE V++++N + +A+GE+    E +   GVR+I + +
Sbjct: 412 PVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELV---ELEGQLGVRIITLAS 467


>gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
 gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni]
 gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221]
 gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 102

 Score = 84.9 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           NI      +++ I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ IN +
Sbjct: 8   NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              KGE+ + E+   +  +R+ EIL+++
Sbjct: 68  IFGKGEVMVYEK---NLAIRINEILDSK 92


>gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228]
 gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20]
 gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228]
 gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20]
          Length = 102

 Score = 84.9 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            +++ I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ IN +   KGE+
Sbjct: 15  QSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEV 74

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            + E+   +  +R+ EIL+++
Sbjct: 75  MVYEK---NLAIRINEILDSK 92


>gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia oklahomensis EO147]
 gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia oklahomensis C6786]
          Length = 115

 Score = 84.9 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
               +  +     D   E   S ++ I     D   L+  IPV++ + +GS  + ++ L+
Sbjct: 2   EPTDQPDLDVLLDDLAPEASDSPADAIERPRRDPMQLLAKIPVQLTLEVGSATITLAELM 61

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            + +G V+ LD+  GE + I IN   +   E+ +  +   ++G++++++
Sbjct: 62  AIEEGSVLELDRLAGEPLLIKINGTPVGHAEVVVSGD---NYGLKLLDL 107


>gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 105

 Score = 84.9 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           NI      +++ I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ IN +
Sbjct: 11  NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 70

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              KGE+ + E+   +  +R+ EIL+++
Sbjct: 71  IFGKGEVMVYEK---NLAIRINEILDSK 95


>gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
 gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
          Length = 122

 Score = 84.9 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
                + K   +      +PVK+ + L S  + + +L  + +GDVI LD+ VGE++DI +
Sbjct: 29  SEPPAIRKPLKHLSFFQQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRV 88

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143
           N   + KGE+    E    +GVR++E+
Sbjct: 89  NGALLGKGEVV---EVGGRYGVRLLEV 112


>gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
 gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
          Length = 119

 Score = 84.5 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            +  IPV + + +GS  + +++LVN+ +G V+ LDK  GE +DI +N   I + E+ +  
Sbjct: 40  FLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAG 99

Query: 131 EDDTHFGVRVIEI 143
           +   ++G+RV+E+
Sbjct: 100 D---NYGLRVVEL 109


>gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
 gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 116

 Score = 84.5 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            +  IPVK+ + +GS  + +++L  +S G V+ LDK  GE +DI +N   I + E+ +  
Sbjct: 38  FLRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSG 97

Query: 131 EDDTHFGVRVIEILNAQ 147
           +   ++G+RV+E+ + Q
Sbjct: 98  D---NYGLRVVELNDLQ 111


>gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
 gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
          Length = 98

 Score = 84.5 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            +++ I++I V     LG+  M +  L+ L  G VI L+K  GESV++ +N +   KGE+
Sbjct: 10  QSYEDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEV 69

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            + E+   +  +R+ EIL+++
Sbjct: 70  MVYEK---NLAIRINEILDSK 87


>gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus
           saanensis SP1PR4]
 gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus
           saanensis SP1PR4]
          Length = 100

 Score = 84.5 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           T   DL+M+I +   +  G+  MQ+  ++ LS GDVI LD+ V + VD+ I ++ +A+GE
Sbjct: 12  TPALDLLMDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVDLVIGDRIVARGE 71

Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147
           + ++     +F + V E+   Q
Sbjct: 72  VVVLN---GYFALNVTEVAAPQ 90


>gi|331005447|ref|ZP_08328826.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
 gi|330420723|gb|EGG95010.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
          Length = 104

 Score = 84.5 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 63/107 (58%), Gaps = 7/107 (6%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
           EM + K ++  +++ + S  N +      N D++ ++ +KMQ+ LG   +Q+  L+ + +
Sbjct: 5   EMSVSKAELKTLTQELLSGDNLL----AGNIDVLKDLKIKMQVSLGETEIQVDKLMTMKE 60

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           G V+ LD+     +DI IN + +A+G + ++++D   FGV++ EI +
Sbjct: 61  GSVVKLDREANSPLDIFINGKLVARGVMVVVDDD---FGVQITEISS 104


>gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
           DSM 574]
          Length = 131

 Score = 84.1 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS       + +   + ++ + +   LG   +++  ++NL  G VI L+K  G++++I  
Sbjct: 34  DSFRPERTISTSLSHLADVQITISAELGETTLKLREVLNLDVGSVIDLNKSAGDAINIYF 93

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           N++K AKGE+ ++ +    F VR+  I+  +
Sbjct: 94  NDRKAAKGEVIVVNDS---FAVRINSIIPPK 121


>gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-66c26]
 gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP
           107932]
 gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-76w55]
 gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-97b34]
 gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-37x79]
 gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
 gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-32g58]
 gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
          Length = 124

 Score = 84.1 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 66/113 (58%), Gaps = 3/113 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
           ++    ++  + V++  +     + ++ E + +N   I+++ +++ +++G   M + +++
Sbjct: 8   SDEEAKMLLNDKVESEVDGDDELALDVSEVNRNNIQRILDLKLELSVVIGRTKMTLRDIL 67

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           NL KG +I L+    + V+I I+N+ +A G++ +++    +FGV++  I++ +
Sbjct: 68  NLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVVD---LNFGVKITSIVSEE 117


>gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 111

 Score = 84.1 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           ++  E S  ++  ++++ V+    LG   + +  ++ L KG +I L K  GESV+  +N 
Sbjct: 16  DSESELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNG 75

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + + +GE+ + E+   +  +R+ E+L++
Sbjct: 76  RILGRGEVMVYEK---NLAIRINEVLDS 100


>gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 150

 Score = 83.8 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D   Q+   S P           +V+ +  P    +    ++     +   ++PV + + 
Sbjct: 24  DEVKQEKEGSQPKQEEPPAAPAEEVERVEFPEFVQAPQGAKE--RGVNFFESVPVTLDLE 81

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           LG+  + +  ++ L K  +I LDK  GE+  + +N + +A GE+ ++ +   +FG RV E
Sbjct: 82  LGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVIND---NFGFRVAE 138

Query: 143 I 143
           +
Sbjct: 139 V 139


>gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           414]
          Length = 102

 Score = 83.8 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           NI      +++ I++I V     LG+  M ++ L+ L  G VI L+K  GESV++ IN +
Sbjct: 8   NIHHGLLQSYEDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              KGE+ + E+   +  +R+ EIL+++
Sbjct: 68  IFGKGEVMVYEK---NLAIRINEILDSK 92


>gi|114765261|ref|ZP_01444393.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542396|gb|EAU45424.1| Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein [Roseovarius sp. HTCC2601]
          Length = 114

 Score = 83.8 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            +   ++ D ++N+ + +QI+LG   M I+ L+ LS+G +I LDK +G+ V++ IN++ +
Sbjct: 27  SKGGANSIDAMLNVGLNVQIVLGQTRMPIAQLLKLSRGSIIELDKSIGQPVEVVINDRLV 86

Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
           A+G++  +E+D    GV +IEI+ 
Sbjct: 87  ARGDLVKLEDD--RLGVSLIEIVK 108


>gi|238762375|ref|ZP_04623346.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
 gi|238699360|gb|EEP92106.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
          Length = 105

 Score = 83.8 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++        +N   +      L   IPV + + + S  + +S L++++   VI LDK  
Sbjct: 4   SVPTASVPAVDNSQHEQQRKISLFSRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKLA 63

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           GE +DI IN     + E+ ++ E    +G+R+I 
Sbjct: 64  GEPLDIKINGIMFGQAEVVVVNE---KYGLRIIS 94


>gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
 gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
          Length = 318

 Score = 83.8 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQ 80
             P  +  V +         +      +S P       +N ++   +    + +I + + 
Sbjct: 194 QEPAAEEAVHTEELPFRKKEKTVAFREVSFPEFKYVPLDNQVDHIGEERKKLRDITLDVS 253

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + +G     + +++ L KG ++TLDK+ G   D+ +N + I K ++ + ++    F  R+
Sbjct: 254 VRIGGTVCSVKDILALQKGQILTLDKQAGSPADVVVNGKLIGKSDVLVTDD---KFAARI 310

Query: 141 IEILNAQ 147
           IEI+  +
Sbjct: 311 IEIIGKR 317


>gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
 gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
          Length = 104

 Score = 83.8 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++++ I++I V     LG+  M +S L+ L  G VI L+K  GESV++ IN +   KGE+
Sbjct: 17  NSYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEV 76

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            + E+   +  +R+ EIL+++
Sbjct: 77  MVYEK---NLAIRINEILDSK 94


>gi|114797692|ref|YP_760111.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
           15444]
 gi|114737866|gb|ABI75991.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
           15444]
          Length = 89

 Score = 83.4 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           ++M++PV++ ++LG   + +  L+ LS G+++ L+++  E VDI ++ + +A+G++ +  
Sbjct: 12  MLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKLVV-- 69

Query: 131 EDDTHFGVRVIEILNAQ 147
             D   GV + EI++++
Sbjct: 70  -TDGQLGVTLSEIIDSR 85


>gi|258622511|ref|ZP_05717533.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|258624666|ref|ZP_05719601.1| flagellar motor switch protein [Vibrio mimicus VM603]
 gi|262173377|ref|ZP_06041054.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
 gi|258583058|gb|EEW07872.1| flagellar motor switch protein [Vibrio mimicus VM603]
 gi|258585211|gb|EEW09938.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|261890735|gb|EEY36722.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
          Length = 123

 Score = 83.4 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
                   +      IPV + + + S  + +  L+   +G VI LDK  GE +D+ +N  
Sbjct: 32  QQTPPIERDLSFFKGIPVVVTLEVASKEITLGELMKAGEGTVIELDKLNGEPLDVKVNGS 91

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
            +   EI I+ +    +G+ + ++L++
Sbjct: 92  LMGHAEIVIVND---KYGLHLTDVLSS 115


>gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
 gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
          Length = 104

 Score = 83.4 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++++ I++I V     LG+  M +S L+ L  G VI L+K  GESV++ IN +   KGE+
Sbjct: 17  NSYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEV 76

Query: 127 TIMEEDDTHFGVRVIEILNAQ 147
            + E+   +  +R+ EIL+++
Sbjct: 77  MVYEK---NLAIRINEILDSK 94


>gi|283784011|ref|YP_003363876.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
 gi|282947465|emb|CBG87012.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
          Length = 123

 Score = 83.0 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           L  +      +    +    + ++ +++  L+  IPV + + + S  + +++L+N+    
Sbjct: 14  LTTEAPAAPANSATEALVTRLEDRFSESMSLLKRIPVTLTLEVSSVEIMLADLLNIDDDT 73

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           VI LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E    +
Sbjct: 74  VIELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEFNTQE 117


>gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 128

 Score = 83.0 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
            P++      ++ S  + +   ++PV +   LG   + +  ++NLS G +I LD   GE 
Sbjct: 27  TPLTPGGEQRIKTSIKHIE---DVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGEL 83

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           V ++INNQK  +GE+ ++ +   ++G+R+  +   
Sbjct: 84  VTMSINNQKFGRGEVMVIND---NYGIRITSVFKP 115


>gi|331671783|ref|ZP_08372579.1| flagellar switch protein [Escherichia coli TA280]
 gi|331070772|gb|EGI42131.1| flagellar switch protein [Escherichia coli TA280]
          Length = 127

 Score = 83.0 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%)

Query: 44  KNDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
            ++V  +++   +++    + ++ +D+  L+  IPV + + + S  + +++L+N+    V
Sbjct: 19  ADEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTV 78

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           I LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 79  IELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116


>gi|293408349|ref|ZP_06652188.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471527|gb|EFF14010.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 127

 Score = 82.6 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%)

Query: 44  KNDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
            ++V  +++   +++    + ++ +D+  L+  IPV + + + S  + +++L+N+    V
Sbjct: 19  ADEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTV 78

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           I LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 79  IELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116


>gi|114777575|ref|ZP_01452556.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
 gi|114552046|gb|EAU54563.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
          Length = 98

 Score = 82.6 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +S  +       T N + IM++P+++ + LG   + +  +  L++G VI ++K     V 
Sbjct: 1   MSDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQ 60

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I  N    AKGE+    +     GVR+ EI+ A
Sbjct: 61  ILANGSIFAKGEVVSTGD---KLGVRITEIVPA 90


>gi|293403338|ref|ZP_06647429.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
 gi|298378949|ref|ZP_06988830.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
 gi|331640695|ref|ZP_08341842.1| flagellar switch protein [Escherichia coli H736]
 gi|331645398|ref|ZP_08346502.1| flagellar switch protein [Escherichia coli M605]
 gi|331666528|ref|ZP_08367402.1| flagellar switch protein [Escherichia coli TA271]
 gi|332281372|ref|ZP_08393785.1| lateral flagellar export/assembly protein [Shigella sp. D9]
 gi|291429191|gb|EFF02211.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
 gi|298280062|gb|EFI21566.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
 gi|331040069|gb|EGI12277.1| flagellar switch protein [Escherichia coli H736]
 gi|331045560|gb|EGI17686.1| flagellar switch protein [Escherichia coli M605]
 gi|331065752|gb|EGI37636.1| flagellar switch protein [Escherichia coli TA271]
 gi|332103724|gb|EGJ07070.1| lateral flagellar export/assembly protein [Shigella sp. D9]
          Length = 127

 Score = 82.6 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 45  NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           ++V  +++   +++    + ++ +D+  L+  IPV + + + S  + +++L+N+    VI
Sbjct: 20  DEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 79

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 80  ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116


>gi|332162917|ref|YP_004299494.1| flagellar switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667147|gb|ADZ43791.1| Flagellar switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862338|emb|CBX72498.1| flagellar motor switch protein fliN [Yersinia enterocolitica
           W22703]
          Length = 129

 Score = 82.6 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
           N SE   + +   +++   +   +N L +      L   IPV + + + S  + +S L++
Sbjct: 15  NFSEQENEVSAPISVASVAAPVVDNSLHEQQRKISLFSRIPVTLTLEVASVDIPLSELMS 74

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           ++   VI LDK  GE +DI IN     + E+ ++ E    +G+R+I 
Sbjct: 75  VNNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVNE---KYGLRIIS 118


>gi|323975948|gb|EGB71042.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
          Length = 123

 Score = 82.6 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 45  NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +DV  +++   +++    + ++ +D+  L+  IPV + + + S  + +++L+N+    VI
Sbjct: 16  DDVAPVTKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 76  ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112


>gi|260893866|ref|YP_003239963.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
           KC4]
 gi|260866007|gb|ACX53113.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
           KC4]
          Length = 114

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           +  P S++      K+T   +L+  + +++  +LG   + +  L+ L +G VI LD+  G
Sbjct: 9   VFSPFSTE-KAWEPKATTALELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAG 67

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           E+VD+ ++ QK  +GE+ ++ E    F VRV+++   Q
Sbjct: 68  EAVDLLLDGQKFGRGEVMVLNE---RFVVRVLQVFPPQ 102


>gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
 gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
          Length = 102

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
                ++ V++ + LG   M + +++ + +G V+ L++   E +D+T N + +A+GE+  
Sbjct: 8   LKRFGDVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIA 67

Query: 129 MEEDDTHFGVRVIEILN 145
               D  F +R++E++ 
Sbjct: 68  ---QDGRFALRIVELVG 81


>gi|170679793|ref|YP_001742353.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
           SMS-3-5]
 gi|300936106|ref|ZP_07151046.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           21-1]
 gi|170517511|gb|ACB15689.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
           SMS-3-5]
 gi|300458726|gb|EFK22219.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           21-1]
          Length = 123

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%)

Query: 44  KNDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
            ++V  +++   +++    + ++ +D+  L+  IPV + + + S  + +++L+N+    V
Sbjct: 15  ADEVAPVTKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTV 74

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           I LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 75  IELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112


>gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum
           kujiense DSM 16994]
          Length = 114

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           +   E S  ++D ++++ V+    LG   + +  ++ L KG VI L K  GESV+  +N 
Sbjct: 18  DPEKELSWMDYDGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPAGESVESYVNR 77

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + I KGE+ + E+   +  +R+ E+L++
Sbjct: 78  RIIGKGEVMVYEK---NLAIRINEVLDS 102


>gi|238752882|ref|ZP_04614347.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
 gi|238708921|gb|EEQ01174.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
          Length = 112

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            V+ I  P  +DS   L +      L   IPV + + + S  + +S L+ ++   VI LD
Sbjct: 11  PVEPIEAPSVNDS---LHEQQRKISLFSRIPVTLTLEVASVDIPLSELMTVNSDSVIELD 67

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           K  GE +DI +N     + E+ ++ E    +G+R++ 
Sbjct: 68  KLAGEPLDIKVNGIMFGQAEVVVINE---KYGLRIVS 101


>gi|188494288|ref|ZP_03001558.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|188489487|gb|EDU64590.1| flagellar motor switch protein FliN [Escherichia coli 53638]
          Length = 127

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 5/100 (5%)

Query: 45  NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           ++V  +++   +++    + +  +D+  L+  IPV + + + S  + +++L+N+    VI
Sbjct: 20  DEVAPVAKSADAETLVTRLEDHFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 79

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 80  ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116


>gi|170021378|ref|YP_001726332.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|218703507|ref|YP_002411026.1| lateral flagellar motor switch C ring FliN-like protein
           [Escherichia coli UMN026]
 gi|256020210|ref|ZP_05434075.1| Lateral flagellar export/assembly protein, Flagellar motor switch
           (C ring) (FliN-like) [Shigella sp. D9]
 gi|260853449|ref|YP_003227340.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli O26:H11 str. 11368]
 gi|260866395|ref|YP_003232797.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli O111:H- str. 11128]
 gi|300817290|ref|ZP_07097508.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           107-1]
 gi|300898059|ref|ZP_07116428.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           198-1]
 gi|301646792|ref|ZP_07246646.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           146-1]
 gi|307136839|ref|ZP_07496195.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli H736]
 gi|307315215|ref|ZP_07594794.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|59889763|emb|CAH19118.1| Lateral flagellar export/assembly protein (FliN-like) [Escherichia
           coli]
 gi|169756306|gb|ACA79005.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|218430604|emb|CAR11470.1| Lateral flagellar export/assembly protein, Flagellar motor switch
           (C ring) (FliN-like) [Escherichia coli UMN026]
 gi|257752098|dbj|BAI23600.1| predicted lateral flagellar motor switching and energizing
           component [Escherichia coli O26:H11 str. 11368]
 gi|257762751|dbj|BAI34246.1| predicted lateral flagellar motor switching and energizing
           component [Escherichia coli O111:H- str. 11128]
 gi|284920027|emb|CBG33083.1| lateral flagellar export/assembly protein (FliN-like) [Escherichia
           coli 042]
 gi|300358237|gb|EFJ74107.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           198-1]
 gi|300530266|gb|EFK51328.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           107-1]
 gi|301075027|gb|EFK89833.1| putative flagellar motor switch protein FliN [Escherichia coli MS
           146-1]
 gi|306905396|gb|EFN35933.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|315059470|gb|ADT73797.1| Lateral flagellar C-ring switch protein [Escherichia coli W]
 gi|315616846|gb|EFU97463.1| flagellar motor switch family protein [Escherichia coli 3431]
 gi|323158012|gb|EFZ44113.1| surface presentation of antigens family protein [Escherichia coli
           EPECa14]
 gi|323178513|gb|EFZ64091.1| surface presentation of antigens family protein [Escherichia coli
           1180]
 gi|323181528|gb|EFZ66948.1| surface presentation of antigens family protein [Escherichia coli
           1357]
 gi|323191517|gb|EFZ76778.1| surface presentation of antigens family protein [Escherichia coli
           RN587/1]
 gi|323379972|gb|ADX52240.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           KO11]
          Length = 123

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 45  NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           ++V  +++   +++    + ++ +D+  L+  IPV + + + S  + +++L+N+    VI
Sbjct: 16  DEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 76  ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112


>gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
           11218]
          Length = 128

 Score = 81.8 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 21  HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ 80
             D P+ D ++     + +     +++ ++ +  +  + N       N  LI +IPV++ 
Sbjct: 7   AFDEPMDDLDLLGDDLDFDGPAMADELSSLPQDTALPTGN-----KSNMGLIRDIPVEVT 61

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + +    + +  ++++    VI LDK+ GE VDI IN      G I I    D  +GV+V
Sbjct: 62  VEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIII---QDGKYGVQV 118

Query: 141 IEILNAQ 147
           + ++N +
Sbjct: 119 LALVNNE 125


>gi|323171042|gb|EFZ56691.1| surface presentation of antigens family protein [Escherichia coli
           LT-68]
          Length = 123

 Score = 81.8 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 45  NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           ++V  +++   +++    + ++ +D+  L+  IPV + + + S  + +++L+N+    VI
Sbjct: 16  DEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            LDK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 76  ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112


>gi|261341514|ref|ZP_05969372.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316312|gb|EFC55250.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
          Length = 133

 Score = 81.8 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            +   +           L   IPV + + + S  + ++ L+ +    VI LDK  GE +D
Sbjct: 37  QAEPESPAGIDDLRKMALFSRIPVTLTLEVASVEVSLAELMTVGHDSVIELDKMAGEPLD 96

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           I +N     K E  ++ +    +G+R++E  + +
Sbjct: 97  IKVNGILFGKAEAVVLND---KYGLRILEFNSKE 127


>gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
 gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
          Length = 288

 Score = 81.8 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           +  ++ N +L+ N+ +K+ + LG+  + + +++    G++I L++ V E ++I IN  KI
Sbjct: 198 VTPTSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKI 257

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
            +GE  I+E     FG+++  I+N 
Sbjct: 258 GEGEAVIVE---GKFGLKIKRIINE 279


>gi|306813324|ref|ZP_07447517.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli NC101]
 gi|305854087|gb|EFM54526.1| putative lateral flagellar motor switching and energizing component
           [Escherichia coli NC101]
          Length = 123

 Score = 81.8 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
             + ++ +D+  L+  IPV + + + S  + +++L+N+    VI LDK  GE +DI +NN
Sbjct: 32  TRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNN 91

Query: 119 QKIAKGEITIMEEDDTHFGVRVIE 142
             + K E+ ++ E    +G+RV+E
Sbjct: 92  ILLGKAEVVVVNE---KYGLRVLE 112


>gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
 gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
          Length = 113

 Score = 81.4 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 54  ISSDSNNILEKSTDN--FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +  D  +I E ++      ++  IPV++ + +G   + +++L++   G  + L++  GE 
Sbjct: 17  LGDDPKSITETASPRDPMRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEP 76

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + I +N   +  GE+ +  E   H+G+R+IE+
Sbjct: 77  LVIKVNGTPVGLGEVVVSGE---HYGLRIIEL 105


>gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
 gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
          Length = 104

 Score = 81.4 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           + + +   E S  ++  I+++ V+    LG   + ++ ++ L KG +I L K  GESV+ 
Sbjct: 4   TKEFDPKKELSWMDYSGILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVES 63

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +N + + KGE+ + E+   +  +R+ E+L++
Sbjct: 64  YVNGRILGKGEVMVYEK---NLAIRINEVLDS 92


>gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
          Length = 127

 Score = 81.4 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           ++   N  L+ +IPV + + +    + +  L+NL  G V+ L+K  G+ VDI IN     
Sbjct: 44  KEHVSNISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFG 103

Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146
            GEI      +  +GVR++ I+  
Sbjct: 104 TGEIV---SKNGQYGVRLLSIIKK 124


>gi|288960009|ref|YP_003450349.1| flagellar motor switch protein [Azospirillum sp. B510]
 gi|288912317|dbj|BAI73805.1| flagellar motor switch protein [Azospirillum sp. B510]
          Length = 100

 Score = 81.1 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 58/106 (54%), Gaps = 12/106 (11%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           +   +D+   S+P   D+++           I + PV++++++G+  +++ +L+ L +G 
Sbjct: 1   MANIDDLLGASDPNDGDASSFA---------IGDAPVEIKVVIGTAMLRVRDLLKLGRGA 51

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           V+ LD+ + +  D+ +    +A+GE+ I+++     GV + + + +
Sbjct: 52  VVELDRHLKDPTDVYVEGVLVARGEVAIIDD---KIGVTLTDFIKS 94


>gi|310816847|ref|YP_003964811.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
           Y25]
 gi|308755582|gb|ADO43511.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
           Y25]
          Length = 98

 Score = 80.3 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            D+  +LE +      + N+P+++ I +G     +  L+ L +  V+ LD+R+ + V+I 
Sbjct: 6   PDAKPLLEGANP---ALWNVPIEVTIAVGRSRPSVRELLALEENAVLQLDRRIDDPVEIY 62

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I ++ IA+GE+   E++     VR+ E+   
Sbjct: 63  IGDRLIARGELQESEDEPGQLAVRLTEVATT 93


>gi|255262994|ref|ZP_05342336.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
 gi|255105329|gb|EET48003.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
          Length = 94

 Score = 80.3 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P+++ I +G     +  L++L++  ++ LDK + + VDI + ++ IA+GE+  +E+ +
Sbjct: 15  DVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDTN 74

Query: 134 -THFGVRVIEILNA 146
            +   VR+ EI++ 
Sbjct: 75  ISQLAVRLTEIIDP 88


>gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           TXDOH]
 gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           Bt4]
 gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
          Length = 115

 Score = 80.3 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 53  PISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           P  + ++          D   L+  IPV++ + +G+  + ++ L+N+ +G V+ LD+  G
Sbjct: 17  PTDAPADTATTADAPRRDPRHLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAG 76

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           E + + +N   +   E+ +  E   ++G+++I++
Sbjct: 77  EPLLVKVNGTTVGHAEVVVSGE---NYGLKIIDL 107


>gi|283834475|ref|ZP_06354216.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
 gi|291070022|gb|EFE08131.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
          Length = 123

 Score = 80.3 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           L  +           +    + ++ +++  L+  IPV + + + S  + +++L+N+    
Sbjct: 14  LAPEATTPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVEVMLADLLNIDDDT 73

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           VI +DK  GE +DI +NN  + K E+ ++ E    +G+RV+E
Sbjct: 74  VIEMDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112


>gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 227

 Score = 79.9 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           ++++I + + + LG   + +  ++++  G VITLD+   E +++ +N       E+  + 
Sbjct: 149 VLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIG 208

Query: 131 EDDTHFGVRVIE 142
           E    +G+R++E
Sbjct: 209 E---KYGIRIVE 217


>gi|144901008|emb|CAM77872.1| Surface presentation of antigens (SPOA) protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 90

 Score = 79.9 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
              + + +  + V+   +LG+  + I+ L+ L +G V+ LD++V + VD+ +N + IA+ 
Sbjct: 9   GAKHQEAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARA 68

Query: 125 EITIMEEDDTHFGVRVIEILN 145
           E+ ++E+   H  V V E+L 
Sbjct: 69  EVVVVED---HLAVTVTEVLK 86


>gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 127

 Score = 79.1 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
              +    N  L+ +IPV + + +    + +  L+NL  G V+ L+K  G+ VDI IN  
Sbjct: 41  EAEQSDVSNVSLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGT 100

Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146
               GEI      +  +GVR++ I+  
Sbjct: 101 AFGTGEIV---SKNGQYGVRLLSIIKK 124


>gi|207109202|ref|ZP_03243364.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 78

 Score = 79.1 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
               LGS  + +  ++   KG VI L K  GESVD  +N + I KGE+ + E    +  +
Sbjct: 3   FSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAI 59

Query: 139 RVIEILNA 146
           R+ EIL++
Sbjct: 60  RLNEILDS 67


>gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
 gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
          Length = 101

 Score = 78.7 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            +  + +EK   ++  +++  V  +  +G   M I  +++L +G +I L K  GES ++ 
Sbjct: 2   EEKFDDVEKLIPDYSNLIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVY 61

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +N + I KGE+ + E+   +  +R+ E+L+A
Sbjct: 62  VNGRIIGKGEVMVYEK---NLAIRLNEVLDA 89


>gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
 gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
          Length = 111

 Score = 78.4 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           +        D   L+  IPV++ + +G+  + ++ L+N+ +G V+ LD+  GE + + +N
Sbjct: 21  ATAAHAPRRDPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVN 80

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEI 143
              +   E+ +  E   ++G++VI++
Sbjct: 81  GTTVGHAEVVVSGE---NYGLKVIDL 103


>gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 124

 Score = 78.4 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 45  NDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
           +DV    +P  S    +          L+ NI +++   +G+  + +  L+ L +GDV+ 
Sbjct: 15  DDVPTYRKPEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELTVRQLLALKEGDVLE 74

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           LDK +G+ +D+ I+ ++ A GE+ ++ E    +GVR+ 
Sbjct: 75  LDKSIGDLIDLFIDGRRFAVGEVVVINEM---YGVRIT 109


>gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 95

 Score = 78.0 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
            + + LG   +++  L+N  KG ++   K  GE VD  +N + +A GEI +++E    F 
Sbjct: 17  DIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVLDE---RFA 73

Query: 138 VRVIEILNAQ 147
           VR+ EIL  +
Sbjct: 74  VRITEILEKE 83


>gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 462

 Score = 78.0 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           ++   +++  + D   +IP+ +   +G   M +  LV L  G+++ L+    + +D+ +N
Sbjct: 382 ASTANKQTAPSID---DIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVN 438

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEI 143
            +++A+GE+  + +     GVRV+EI
Sbjct: 439 GKRVARGELLSIGDA---LGVRVLEI 461


>gi|294678996|ref|YP_003579611.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
           1003]
 gi|294477816|gb|ADE87204.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
           1003]
          Length = 90

 Score = 78.0 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           ++ +  + +    +P+++ I +G     + +L+ + +  ++ LD+RV + V++ + ++ I
Sbjct: 1   MDDTAPSSNPFSQVPIEITISVGKARPLVRDLLRMKRDSILPLDRRVEDPVELYVGDKLI 60

Query: 122 AKGEITIME-EDDTHFGVRVIEILNAQ 147
           A+GE+T ME + +    VR+ E+++ Q
Sbjct: 61  ARGELTEMEGDSNGQLAVRLTEVVDLQ 87


>gi|146278776|ref|YP_001168935.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557017|gb|ABP71630.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 88

 Score = 77.6 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           +    +P+++ I +G     +  L+ L +  V+ LD+RV + VD+ + ++ I +GE+T +
Sbjct: 7   NPFSQVPIEITISVGRARPPVRELLKLQRDAVLALDRRVDDPVDLYVGDRLIGRGELTEL 66

Query: 130 E-EDDTHFGVRVIEILNAQ 147
           E +      VR+ E+ N +
Sbjct: 67  EGDQAGQLAVRLTEVANLR 85


>gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei 668]
 gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305]
 gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           DM98]
 gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia
           pseudomallei 1655]
 gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei]
 gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei 668]
 gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305]
 gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia
           pseudomallei 1655]
          Length = 115

 Score = 77.6 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           L+  IPV++ + +G+  + ++ L+N+ +G V+ LD+  GE + + +N   +   E+ +  
Sbjct: 38  LLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVSG 97

Query: 131 EDDTHFGVRVIEI 143
           E   ++G+++I++
Sbjct: 98  E---NYGLKIIDL 107


>gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
           13177]
          Length = 115

 Score = 77.6 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           L+  IPV++ + +G+  + ++ L+N+ +G V+ LD+  GE + + +N   +   E+ +  
Sbjct: 38  LLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEVVVSG 97

Query: 131 EDDTHFGVRVIEI 143
           E   ++G+++I++
Sbjct: 98  E---NYGLKIIDL 107


>gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima
           DSM 10411]
 gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima
           DSM 10411]
          Length = 95

 Score = 77.2 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           N   EK    F+   +IP+KM   L +  +++ +L+   +GD+I  +K  GE ++I I N
Sbjct: 2   NPNREKIKKEFEKYFDIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIEN 61

Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + +  GE+ +++     F +R+  I   
Sbjct: 62  KPLGMGEVIVLD---NKFAIRITNIFTK 86


>gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
 gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN
 gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
          Length = 112

 Score = 77.2 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +IPV++++++G     +  L+ +  G VI +D+   + VDI +N + IAKGE+ I++   
Sbjct: 41  DIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVIID--- 97

Query: 134 THFGVRVIEILNAQ 147
              GV++ E++  Q
Sbjct: 98  GKIGVKIKEVVKEQ 111


>gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion
           translocase SctQ) [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 445

 Score = 76.8 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
           E+  ++      +   SS +++I E +         IPV + + +G   M + +L+ L  
Sbjct: 342 EVTEEEQSSPKNNASQSSPASSITENTKTGLITPNQIPVNLTVEVGRIQMSMDHLLKLEP 401

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G+++ L+ +  + VD+TIN + + +GE+  + E     GVRV+E+
Sbjct: 402 GNMLELNIKPEDGVDLTINGKIVGRGELLRIGEV---LGVRVLEL 443


>gi|116514990|ref|YP_802619.1| hypothetical protein BCc_047 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256844|gb|ABJ90526.1| flagellar motor switch protein, C-ring protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 134

 Score = 76.4 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +   + +IPV + I L    + I  L+   KG ++ L+  + + ++I INN  IA GE+ 
Sbjct: 56  DSSALSSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELV 115

Query: 128 IMEEDDTHFGVRVIEILN 145
           +   ++  +GV++ ++L 
Sbjct: 116 V---NNDCYGVQITKLLT 130


>gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 111

 Score = 76.1 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++ E   +++      +    DL+ ++ V + + LGS  + +  L+ L  G ++TLD+++
Sbjct: 16  DLPEHEPAETTEARPVAHPRLDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQL 75

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + VD+ +N + +A+ EI  +++    FG+R++EI+  +
Sbjct: 76  DDCVDVRLNERTVARAEIVAVDD---RFGIRIVEIVEER 111


>gi|332559787|ref|ZP_08414109.1| FliN2 [Rhodobacter sphaeroides WS8N]
 gi|332277499|gb|EGJ22814.1| FliN2 [Rhodobacter sphaeroides WS8N]
          Length = 88

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            + + +  +P+++ I +G     +  L+ L +  V+ LD+RV + V++ + ++ I +GE+
Sbjct: 4   ADQNPLTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDRLIGRGEL 63

Query: 127 TIME-EDDTHFGVRVIEILNAQ 147
           T +E E      VR+ E+ N +
Sbjct: 64  TELEGEQAGQLAVRLTEVANLR 85


>gi|56695120|ref|YP_165467.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
 gi|56676857|gb|AAV93523.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
          Length = 109

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P      +  +K  +  +   ++P+++ + +G     I +L+ L +  V+TLDKRV + V
Sbjct: 10  PKRYRDMSDPQKPIEAKNPFNSVPIEITVSVGRARPLIRDLIGLGENAVLTLDKRVEDPV 69

Query: 113 DITINNQKIAKGEITIM-EEDDTHFGVRVIEILN 145
           D+ + ++ +A+G++  +  E      VR+ EI +
Sbjct: 70  DLYVGDRLVARGQLEELTGEQAGQLAVRLTEISD 103


>gi|83594500|ref|YP_428252.1| surface presentation of antigens (SPOA) protein [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577414|gb|ABC23965.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
           rubrum ATCC 11170]
          Length = 93

 Score = 75.7 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +  +PV++ ++LG   ++++ L+ L +G V+ L++++ E V+I  N+  +A+GE+ I + 
Sbjct: 15  VYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITD- 73

Query: 132 DDTHFGVRVIEILNA 146
                GV + E++ +
Sbjct: 74  -GDKIGVTLTELVRS 87


>gi|77464888|ref|YP_354392.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
 gi|126463730|ref|YP_001044844.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|77389306|gb|ABA80491.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
 gi|126105394|gb|ABN78072.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 88

 Score = 75.7 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
            + + +  +P+++ I +G     +  L+ L +  V+ LD+RV + V++ + ++ I +GE+
Sbjct: 4   ADQNPLTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDKLIGRGEL 63

Query: 127 TIME-EDDTHFGVRVIEILNAQ 147
           T +E E      VR+ E+ N +
Sbjct: 64  TELEGEQAGQLAVRLTEVANLR 85


>gi|114764046|ref|ZP_01443285.1| flagellar motor switch protein FliN [Pelagibaca bermudensis
           HTCC2601]
 gi|114543404|gb|EAU46419.1| flagellar motor switch protein FliN [Roseovarius sp. HTCC2601]
          Length = 95

 Score = 75.7 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
           +P+++ + +G     + +L+ L  G V+TLDKR+ + V++ + ++ I  G + +++  ++
Sbjct: 19  VPIEITVSVGRARPLVRDLLKLGAGSVLTLDKRLEDPVELYVGDRLIGIGALEVVDGGEN 78

Query: 134 THFGVRVIEILN 145
               VR+ E+++
Sbjct: 79  GQLAVRLTEVVD 90


>gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
 gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
          Length = 151

 Score = 75.7 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
              Q   + ++      D+ N    ++   +++ +  I  ++Q+ +G+  + +  L+   
Sbjct: 39  PTAQIIALPDLHAGAEGDAANQGGDASILKDWNPLHQIKARLQVCVGAVSLSVGELLGAK 98

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +  V+ LD+ +   VD+TI  + +A+G++  ++    HF VR+ E+
Sbjct: 99  EHQVLRLDREIDHPVDLTIEGKVVARGQLVAVD---GHFAVRITEL 141


>gi|313673294|ref|YP_004051405.1| surface presentation of antigens (spoa) protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940050|gb|ADR19242.1| surface presentation of antigens (SPOA) protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 94

 Score = 75.7 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++ + + + LG     I  L++  +G +I L+K  GE VD+ +NN+ +A GEI +++E  
Sbjct: 12  DVIMDVTVELGRKLCTIGELLSWEQGTIIKLNKTSGEVVDMLVNNKPLAIGEIMVLDE-- 69

Query: 134 THFGVRVIEI 143
             F  R+ +I
Sbjct: 70  -KFAFRLSDI 78


>gi|260574385|ref|ZP_05842389.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
 gi|259023281|gb|EEW26573.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
          Length = 89

 Score = 75.3 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
             + +    +P+++ I +G    Q+ +L+ L +  V+ LD+RV + V++ + ++ IA+GE
Sbjct: 4   AADSNPFSQVPIEITISVGKARPQVRDLLKLQRDAVLPLDRRVDDPVELYVGDRLIARGE 63

Query: 126 ITIME-EDDTHFGVRVIEILNAQ 147
           +  ++ +      VR+ E+ N +
Sbjct: 64  LQELDGDQAGQLAVRLTEVANLR 86


>gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis
           Ellin345]
          Length = 252

 Score = 74.9 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
            +  G   M + +++ L  G V+ LD+ + + V++ ++ + IA+G + +++    ++G+R
Sbjct: 186 TLRFGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVVD---GNYGLR 242

Query: 140 VIEI 143
           V E+
Sbjct: 243 VAEV 246


>gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
 gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
          Length = 109

 Score = 74.9 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E+     +   +I   + + LG   M +  ++ L +G ++ L K  GESVD+ +N   +A
Sbjct: 15  EELLKKLEWYGDIMFNLDVELGRIAMTLREVLELKEGSIVELKKTAGESVDVMVNQCLLA 74

Query: 123 KGEITIMEED 132
             EI ++E++
Sbjct: 75  TAEIVVIEDN 84


>gi|260429524|ref|ZP_05783501.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
 gi|260420147|gb|EEX13400.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
          Length = 95

 Score = 74.5 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
           +P+++ + +G     + +L+ L +G V+TLDKR+ + V++ + ++ I  G + ++E  ++
Sbjct: 19  VPIEITVSVGRARPLVRDLLKLGEGSVLTLDKRLEDPVELYVGDRLIGIGALEVLEGGEN 78

Query: 134 THFGVRVIEILNAQ 147
               VR+ E+++ +
Sbjct: 79  GQLAVRLTEVVDLK 92


>gi|21672366|ref|NP_660433.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008469|sp|Q8KA38|FLIN_BUCAP RecName: Full=Flagellar motor switch protein FliN
 gi|21622971|gb|AAM67644.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 133

 Score = 74.5 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           ++ +I + + + LG   ++I +L+N SKG ++ L ++  + + +  NN+ IA GEI    
Sbjct: 53  ILFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVF-- 110

Query: 131 EDDTHFGVRVIEILNA 146
             +  +G+R+I I N+
Sbjct: 111 -SNNKYGIRIISINNS 125


>gi|260432139|ref|ZP_05786110.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415967|gb|EEX09226.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 95

 Score = 74.5 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           ++  +  ++  +    IP+++ + +G     I +L+N+ +  V+TLDKRV + VD+ + +
Sbjct: 2   SDPSQTKSEKQNPFEAIPIEVTVSVGRARPLIRDLLNMGENAVLTLDKRVEDPVDLYVGD 61

Query: 119 QKIAKGEITIME-EDDTHFGVRVIEILN 145
           Q +A+G +  ME E      VR+ EI +
Sbjct: 62  QLVARGLLEEMEGEHAGQLAVRLTEISD 89


>gi|126730034|ref|ZP_01745846.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
 gi|126709414|gb|EBA08468.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
          Length = 95

 Score = 74.5 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
           +P+++ + +G     +  L+ L++G V+ LDK++ + V++ +  + I  G + ++E +  
Sbjct: 19  VPIEITVSVGKARPLVRELLQLNEGSVLALDKQLDDPVELYVGEKLIGIGVLEVVEGDGQ 78

Query: 134 THFGVRVIEILNAQ 147
               VR+ E+++ Q
Sbjct: 79  GQLAVRLTEVVDLQ 92


>gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH]
 gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia
           profundicola AmH]
          Length = 103

 Score = 74.1 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           +E+   ++  +++  V  +  LG   + +  ++ L KG VI L K  GES ++ IN + I
Sbjct: 11  IEEFIPDYSNLLDTEVLFESDLGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRII 70

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
            KGE+ + E+   +  +R+ E+L+A
Sbjct: 71  GKGEVMVYEK---NLAIRLNEVLDA 92


>gi|209964576|ref|YP_002297491.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
 gi|15077432|gb|AAK83160.1|AF332661_1 lateral flagellum motor switch protein FliNL [Rhodospirillum
           centenum]
 gi|209958042|gb|ACI98678.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
          Length = 103

 Score = 74.1 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           +  ++D+D +    +       E        I +  V++ ++LG+  +++ +L+ L +G 
Sbjct: 1   MADQDDIDAMFGGQAEPKKADSE--LPEISAIYDTEVEVSVVLGTSTIRVRDLLKLGRGA 58

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++ LD+++ +  DI ++ + + +GE+TI+E+ 
Sbjct: 59  IVELDRKIDDLSDIIVSGRMVGRGEVTIVEDK 90


>gi|315126004|ref|YP_004068007.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
 gi|315014518|gb|ADT67856.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
          Length = 110

 Score = 74.1 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D  +  + +  +     ++P+ + + + S  + +  L    +GDV+ LDK  GE++D+ +
Sbjct: 21  DDKSANKTNEGSMSFFQDVPLLVTLEVASTEITLGELSQAKEGDVLKLDKVAGEALDVKV 80

Query: 117 NNQKIAKGEITIMEEDDTHFGVR 139
           N    AK E+ ++E     +G++
Sbjct: 81  NGVFFAKAEVVMVE---GQYGLK 100


>gi|259418090|ref|ZP_05742009.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
 gi|259346996|gb|EEW58810.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
          Length = 98

 Score = 73.7 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           ++  +  KS D  +  +++PV++ + +G     I +LVNL +  ++TLDK+V + VD+ +
Sbjct: 3   ETGELNPKSADAGNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYV 62

Query: 117 NNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
            ++ +A+G++  ME +      VR+ EI + Q
Sbjct: 63  GDRLVARGQLEEMEGDQAGQLAVRLTEIADLQ 94


>gi|254511535|ref|ZP_05123602.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221535246|gb|EEE38234.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 95

 Score = 73.7 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           SD  +   + ++ F+    +P+++ + +G     I +L+N+ +  V+TLD+R+ + VD+ 
Sbjct: 2   SDPQSRNPEKSNPFEA---VPIEVTVSVGRARPLIRDLLNMGENAVLTLDRRIEDPVDLY 58

Query: 116 INNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
           + +Q +A+G +  ME +      VR+ EI + Q
Sbjct: 59  VGDQLVARGLLEEMEGDQAGQLAVRLTEISDLQ 91


>gi|237800782|ref|ZP_04589243.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023640|gb|EGI03697.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 353

 Score = 73.7 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 52  EPISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            P + D N+++ + + + DL   + ++P+ +   LGS  + ++ L  ++ G ++ L    
Sbjct: 259 PPYTYDRNDLMSELSTDADLDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLA 318

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
            + VD+ +N +++ +GE+  + +     GVR+
Sbjct: 319 HDEVDLMVNGRRVGRGELVTIGDG---LGVRL 347


>gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
           SB155-2]
 gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
           SB155-2]
          Length = 83

 Score = 73.4 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +F L+ +I +KM + LGS    I  +++L +GDVI L++   + +D+ +N +K+A GEI 
Sbjct: 10  DFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIV 69

Query: 128 IMEEDDTHFGVRVIEI 143
           ++ +    +GVR++++
Sbjct: 70  VIND---KYGVRIVDL 82


>gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp.
           TM1040]
 gi|99039065|gb|ABF65677.1| Flagellar motor switch protein fliN [Ruegeria sp. TM1040]
          Length = 98

 Score = 73.4 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           ++  +  K+ +  +  +++PV++ + +G     I +LVNL +  ++TLDK+V + VD+ +
Sbjct: 3   ETGELNPKAAEASNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYV 62

Query: 117 NNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
            ++ +A+G++  ME +      VR+ EI + Q
Sbjct: 63  GDRLVARGQLEEMEGDQAGQLAVRLTEIADLQ 94


>gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
 gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
          Length = 329

 Score = 72.6 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 14  NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDN-ISEPISSDSNNILEKSTDNFDLI 72
           ++    + +D   +       T      +   +V+  + +  +  ++    ++  N +LI
Sbjct: 190 DIISPKIELDEIFKQQEPQEETIIEHEEVPFKEVEEELFKEAAPQASKATLEAPKNLNLI 249

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           M+I + ++I +G   M I ++++L  G +I LDK + E +DI +N 
Sbjct: 250 MDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVNG 295


>gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684]
 gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684]
          Length = 301

 Score = 71.8 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V+++S   S      + +     D + +I V++   LG   + +    ++  G V+ LD+
Sbjct: 188 VEHVSGGASDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDR 247

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           +  + VD+ +N  + A G + + ++    + +R+ E+  
Sbjct: 248 KADDPVDLYVNGLRFASGTLVLTDD--GEWALRLAEVAG 284


>gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum
           CMR15]
          Length = 132

 Score = 71.4 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 27  QDTNVSSP--TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           QD   + P         +   ++ +  E IS+ +  +   +  + + +  +  ++ + +G
Sbjct: 12  QDPGFAEPHGAQPVAQTLALGELHSTGEAISN-APLLNGATPSSANPLHRVKAQLTVCVG 70

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +  + +  L+      V+ LD +V + VD+ +  + +A+G++  ++E   HFGVR+ E+
Sbjct: 71  TATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDE---HFGVRITEL 126


>gi|89069802|ref|ZP_01157137.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
 gi|89044603|gb|EAR50719.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
          Length = 96

 Score = 71.4 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI-MEEDD 133
           +P+++ I++G     +  L+ L +  V+ LD+ V + V++ + ++ IA+GE+      + 
Sbjct: 20  VPIEITIVVGRARPSVGELLTLDQNAVLPLDRGVDDPVELYVGDRLIARGELQEHAGGEP 79

Query: 134 THFGVRVIEI 143
               VR+ E+
Sbjct: 80  GQLAVRLTEV 89


>gi|327193026|gb|EGE59938.1| flagellar motor switch protein FliN [Rhizobium etli CNPAF512]
          Length = 56

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 45/54 (83%)

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +NL++G  I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ +
Sbjct: 1   MNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 54


>gi|114798836|ref|YP_758975.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
           ATCC 15444]
 gi|114739010|gb|ABI77135.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
           ATCC 15444]
          Length = 99

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I ++PV + + +G   + +  ++ L    VI L  +V + VD+ I+++ IAKGE+   E 
Sbjct: 22  IYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDLFIDDKLIAKGELV--ET 79

Query: 132 DDTHFGVRVIEILNA 146
           DD    V+++EI+  
Sbjct: 80  DDGQIAVKIVEIIEK 94


>gi|126734122|ref|ZP_01749869.1| surface presentation of antigens (SPOA) protein [Roseobacter sp.
           CCS2]
 gi|126716988|gb|EBA13852.1| surface presentation of antigens (SPOA) protein [Roseobacter sp.
           CCS2]
          Length = 94

 Score = 71.0 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           + +D    + NIP+++ + +G     + +L+ LS+  ++ LD ++ + V+I I ++ IA+
Sbjct: 6   EQSDKSHPLHNIPIEISVTVGKARPLVRDLLQLSENAILPLDSKIEDPVEIYIGDRLIAR 65

Query: 124 GEITIMEE-DDTHFGVRVIEILNAQ 147
           GE+   +  +     VR+ E+ + +
Sbjct: 66  GELQEADGAEPGQLAVRLTEVAHDK 90


>gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 95

 Score = 70.7 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 53/85 (62%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           +E +   +DL+++  + + ++LGS  + I + ++L +GD+++LDK  G   DI +N++ I
Sbjct: 1   MEINDRAYDLLVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRII 60

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
             G+I +++E      VRV + +++
Sbjct: 61  GTGDIIVIDE---KLAVRVQDAMDS 82


>gi|134300237|ref|YP_001113733.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           reducens MI-1]
 gi|134052937|gb|ABO50908.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           reducens MI-1]
          Length = 128

 Score = 70.3 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           DS         +   I ++ V +   LG   ++   ++NL  G V+ ++K  G+++++ I
Sbjct: 34  DSFRQERIIKTSLSHIEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYI 93

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           N+ K A+GEI I+ +    F VR+  I + +
Sbjct: 94  NDIKAAQGEIIIVND---KFAVRINSITSPK 121


>gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
 gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
          Length = 119

 Score = 69.5 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus
           NVH0597-99]
 gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus
           H3081.97]
 gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
 gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
 gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
 gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus
           NVH0597-99]
 gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus
           H3081.97]
 gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH187]
 gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1]
 gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
 gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
          Length = 119

 Score = 69.5 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 119

 Score = 68.7 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +++ K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSDMKVGIGEAIVMDE---KFGIIISEI 99


>gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus
           G9241]
 gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus
           G9241]
          Length = 119

 Score = 68.7 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
 gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
          Length = 119

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
 gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
 gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 119

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 80

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           + K     +   ++ + + + +G   + ++ ++ L +GD+I  DK++ + +D+ +N QK 
Sbjct: 1   MTKQDKRLEDFKDVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKF 60

Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144
             GE+ I+ +    + +R+++++
Sbjct: 61  GIGELVIVND---KYSLRLVDLV 80


>gi|254499104|ref|ZP_05111794.1| putative surface presentation of antigens (SPOA) protein
           [Legionella drancourtii LLAP12]
 gi|254351643|gb|EET10488.1| putative surface presentation of antigens (SPOA) protein
           [Legionella drancourtii LLAP12]
          Length = 101

 Score = 68.0 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
             L+ +I V+  + +G+  + I+ L  L  G  + L+++  E V+I +N + IA+GE+  
Sbjct: 28  LGLVGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELM- 86

Query: 129 MEEDDTHFGVRVIEILN 145
               + HF V++ EI +
Sbjct: 87  --SHEDHFAVQITEIYS 101


>gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH820]
 gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
 gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L]
 gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH820]
 gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
 gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 119

 Score = 68.0 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
 gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
          Length = 119

 Score = 68.0 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|116626496|ref|YP_828652.1| surface presentation of antigens (SPOA) protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229658|gb|ABJ88367.1| surface presentation of antigens (SPOA) protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 82

 Score = 68.0 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
             +    + ++PV +++ L    M   +++ L +G VI   +  GE++DI I       G
Sbjct: 3   PKEEVAPLGDVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSG 62

Query: 125 EITIMEEDDTHFGVRVIE 142
           EI ++E      GVR+ +
Sbjct: 63  EIVVIENT---LGVRITD 77


>gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
 gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Bacillus anthracis str. A2012]
 gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0488]
 gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0442]
 gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0193]
 gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0389]
 gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0174]
 gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. CDC 684]
 gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0248]
 gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
 gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
 gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
 gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia
           94]
 gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. Ames]
 gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis
           str. Sterne]
 gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0488]
 gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0193]
 gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0442]
 gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0389]
 gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0174]
 gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. CDC 684]
 gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0248]
          Length = 119

 Score = 67.6 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  V
Sbjct: 12  ELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKV 71

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           D+ ++N K+  GE  +M+E    FG+ + EI
Sbjct: 72  DVYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|149203109|ref|ZP_01880080.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
           TM1035]
 gi|149143655|gb|EDM31691.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
           TM1035]
          Length = 98

 Score = 67.6 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM-EEDD 133
           +P+++ + +G     I +L+ L K  V+ LD+RV ++V++ +  + IA+G++  +  +  
Sbjct: 22  VPIEITVSVGKARPLIRDLLKLGKNAVLVLDRRVDDAVELYVGERLIARGQLEELAGDQQ 81

Query: 134 THFGVRVIEILNAQ 147
               VRV E+ N Q
Sbjct: 82  GQIAVRVTEVANLQ 95


>gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
 gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
 gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1]
          Length = 119

 Score = 67.6 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEDFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0465]
 gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0465]
          Length = 119

 Score = 67.6 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  V
Sbjct: 12  ELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKV 71

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           D+ ++N K+  GE  +M+E    FG+ + EI
Sbjct: 72  DVYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
 gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
 gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis
           KBAB4]
 gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
 gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
          Length = 119

 Score = 67.6 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +++ K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSDMKVGIGEAIVMDE---KFGIIISEI 99


>gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB108]
 gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB102]
 gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
 gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB108]
 gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB102]
 gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
          Length = 119

 Score = 67.2 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|220926099|ref|YP_002501401.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           nodulans ORS 2060]
 gi|219950706|gb|ACL61098.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           nodulans ORS 2060]
          Length = 101

 Score = 67.2 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
             ++ ++ V + ++LG   M I  L+ + +G VI LD    + V+I  N+  IA+G+I +
Sbjct: 1   MAVLEDLKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDTDMVEILANDHPIARGQIVV 60

Query: 129 MEEDDTHFGVRVIEIL 144
                    V V E++
Sbjct: 61  ---TGNRISVEVTELI 73


>gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
 gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
          Length = 119

 Score = 67.2 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E    + D + +I + + + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFARKRNEAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH1134]
 gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus
           G9842]
 gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           200]
 gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
 gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
 gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
 gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
 gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
 gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
 gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
 gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
 gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
 gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
 gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH1134]
 gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus
           B4264]
 gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus
           G9842]
 gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
 gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
 gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
 gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
 gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
 gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
 gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
 gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
 gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
 gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           200]
 gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 119

 Score = 67.2 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|75763361|ref|ZP_00743099.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228900346|ref|ZP_04064575.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           4222]
 gi|228938877|ref|ZP_04101477.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|229109220|ref|ZP_04238819.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
 gi|74489152|gb|EAO52630.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228674230|gb|EEL29475.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
 gi|228820726|gb|EEM66751.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228859233|gb|EEN03664.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           4222]
          Length = 109

 Score = 67.2 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 3   LEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 62

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 63  VYLSNMKVGIGEAIVMDE---KFGIIISEI 89


>gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
 gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
          Length = 119

 Score = 66.8 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEDFAGKRNEMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|163732489|ref|ZP_02139934.1| flagellar motor switch protein FliN, putative [Roseobacter
           litoralis Och 149]
 gi|161393849|gb|EDQ18173.1| flagellar motor switch protein FliN, putative [Roseobacter
           litoralis Och 149]
          Length = 97

 Score = 66.8 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
           +P+++ + +G     I +LV L +  V++LDK V + VD+ I ++ IA+G +   E +  
Sbjct: 21  VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVDDPVDLYIGDRLIARGMLEEKEGDQS 80

Query: 134 THFGVRVIEILNAQ 147
               VR+ E+++ +
Sbjct: 81  GQLIVRLTEVIDLK 94


>gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
 gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
          Length = 119

 Score = 66.8 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSNMKVGIGEAIVMDE---KFGIIISEI 99


>gi|328543417|ref|YP_004303526.1| surface presentation of antigens protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413162|gb|ADZ70225.1| Putative surface presentation of antigens protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 88

 Score = 66.8 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           I V + ++LG+  M +  L+ + +G VI LD    + V I  NN  +AKG++ ++ E   
Sbjct: 7   ISVDISVVLGTTEMPVHQLLRMGRGAVIDLDVAEEDDVKIFANNTLVAKGQVVLLGE--- 63

Query: 135 HFGVRVIEIL 144
             GV + E+L
Sbjct: 64  RIGVSITEVL 73


>gi|229058413|ref|ZP_04196797.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
 gi|228719922|gb|EEL71512.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
          Length = 119

 Score = 66.8 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E    + D + +I +++ + LG   +Q+ ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIQLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +++ K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSDMKVGIGEAIVMDE---KFGIIISEI 99


>gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 101

 Score = 66.8 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           +    D   + E   + ++        + +LI ++ V++ + LG   M +  L  L  GD
Sbjct: 1   MTATVDAIELEEARVAVNDGQSPLIKRDMNLIKHVVVELVVQLGHASMSVDELFALKAGD 60

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           V+ L ++V E   + ++ + +A+G +  +++   +FG+++ EIL
Sbjct: 61  VVKLLEQVHEPASLCLDGKPVARGNLVAVDD---NFGIQLTEIL 101


>gi|229132592|ref|ZP_04261440.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
 gi|228650824|gb|EEL06811.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
          Length = 119

 Score = 66.8 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E    + D + +I +++ + LG   +++ ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIKLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +++ K+  GE  +M+E    FG+ + EI
Sbjct: 73  VYLSDMKVGIGEAIVMDE---KFGIIISEI 99


>gi|229102363|ref|ZP_04233071.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
 gi|228681010|gb|EEL35179.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
          Length = 109

 Score = 66.4 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E S  + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 3   LEDFAGKRNEVSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 62

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + ++N K+  GE  +M+E    FG+ + EI
Sbjct: 63  VYLSNMKVGIGEAIVMDE---KFGIIISEI 89


>gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
 gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
 gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
 gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
          Length = 119

 Score = 66.4 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +   +    E    + D + +I +++ + LG   + + ++  L  GDV+ ++K +G  VD
Sbjct: 13  LEEFAGGRNEAEKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +++ K+  GE T+M+E    FG+ + EI
Sbjct: 73  VYLSDIKVGIGEATVMDE---KFGIIISEI 99


>gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10]
 gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris
           MCS10]
          Length = 99

 Score = 66.4 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +   I ++ V++ ++LG   M I   + + +G VI LD    + V I  NN  IA+G++ 
Sbjct: 17  DVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVV 76

Query: 128 IMEEDDTHFGVRVI 141
           I  +      V + 
Sbjct: 77  IQGD---RIAVSIT 87


>gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula
           marina DSM 3645]
 gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula
           marina DSM 3645]
          Length = 309

 Score = 66.4 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           ++ I +++ + L S  M++  +  L  G +I  DK   ES+D+ +   +IA+GE   + +
Sbjct: 224 LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGD 283

Query: 132 DDTHFGVRVIEILNAQ 147
               FG+RV  +L  +
Sbjct: 284 ---KFGMRVTNVLLPE 296


>gi|307946346|ref|ZP_07661681.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4]
 gi|307770010|gb|EFO29236.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4]
          Length = 88

 Score = 66.4 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
              + +I V + ++LG   M I  L+ + +G VI LD    + V+I  N   +A G++ +
Sbjct: 1   MTTLDDIFVDISVVLGKSEMPIHQLLRMGRGAVIDLDVSEDDDVEIYANKTLVATGQVVL 60

Query: 129 MEEDDTHFGVRVIEIL 144
           + E     G+ V E+L
Sbjct: 61  LGE---RIGISVTEVL 73


>gi|110677671|ref|YP_680678.1| flagellar motor switch protein FliN, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453787|gb|ABG29992.1| flagellar motor switch protein FliN, putative [Roseobacter
           denitrificans OCh 114]
          Length = 97

 Score = 66.4 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD- 133
           +P+++ + +G     I +LV L +  V++LDK V + VD+ I ++ IA+G +   ++D  
Sbjct: 21  VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVEDPVDLYIGDRLIARGMLEEKDDDQS 80

Query: 134 THFGVRVIEILNAQ 147
               VR+ E+++ +
Sbjct: 81  GQLIVRLTEVIDLK 94


>gi|85706152|ref|ZP_01037247.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
 gi|85669316|gb|EAQ24182.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
          Length = 100

 Score = 66.4 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133
           +P+++ + +G     I +L+ L K  V+ LD+RV + V++ +  + +A+G +  ++ +  
Sbjct: 23  VPIEITVSVGKARPSIRDLLKLGKNAVLVLDRRVDDMVELYVGERLVARGRLEELDGDQQ 82

Query: 134 THFGVRVIEILNAQ 147
               VRV E+ N Q
Sbjct: 83  GQIAVRVTEVANLQ 96


>gi|170750204|ref|YP_001756464.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656726|gb|ACB25781.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 122

 Score = 66.0 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + V + ++LG   M +  L+ + +G VI L+    + V+I  N+  IA+G+I +  +   
Sbjct: 28  LKVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILANDHPIARGQIVVTGD--- 84

Query: 135 HFGVRVIEIL 144
              V V E++
Sbjct: 85  RISVEVTELI 94


>gi|225850265|ref|YP_002730499.1| flagellar motor switch phosphatase FliY [Persephonella marina
           EX-H1]
 gi|225646313|gb|ACO04499.1| flagellar motor switch phosphatase FliY [Persephonella marina
           EX-H1]
          Length = 79

 Score = 66.0 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           +   + ++ VK+   +G        ++ L +GD+I LDK + + V++ + +Q  A GE+ 
Sbjct: 6   DISFLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELI 65

Query: 128 IMEEDDTHFGVRVIEI 143
           +  E    +G+RV+++
Sbjct: 66  VANE---KYGIRVVDL 78


>gi|152975143|ref|YP_001374660.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023895|gb|ABS21665.1| CheC, inhibitor of MCP methylation [Bacillus cytotoxicus NVH
           391-98]
          Length = 554

 Score = 66.0 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 40  MLIQKNDVDNISEPISSDSN----NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             I++ +V+ I EP          +  E    +  ++ N+ + ++ + GS    I ++++
Sbjct: 449 ASIKEENVEEIPEPAVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILS 508

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           L + D + LD+ V E + I +NN  +A GE+  ++     FGV+V 
Sbjct: 509 LHENDAVVLDEEVDEPIRIYVNNVLVAYGELVNVD---GFFGVKVT 551


>gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
 gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
          Length = 547

 Score = 66.0 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V  + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+
Sbjct: 453 VAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            + E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 513 DIDEPIQIYVNDVLVAYGELVNVD---GFFGVKVT 544


>gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           sp. 4-46]
 gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           sp. 4-46]
          Length = 101

 Score = 66.0 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
             ++  + V + ++LG   M I  L+ + +G VI LD    + VDI  N+  IA+G+I +
Sbjct: 1   MAVLEELKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVV 60

Query: 129 MEEDDTHFGVRVIEIL 144
                    V V E++
Sbjct: 61  ---TGNRISVEVTELI 73


>gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
 gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
 gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
 gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
          Length = 95

 Score = 66.0 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           +E S   +DL+++  + + ++LGS  + +   + L++GD+I+L K  G   +I +N++ I
Sbjct: 1   MEISERVYDLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRII 60

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
             G+I +++E      VRV + +++
Sbjct: 61  GTGDIIVIDE---KLAVRVQDAMDS 82


>gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1]
 gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1]
          Length = 108

 Score = 65.7 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 42/80 (52%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           P+ +     L  S  +   +  + V++Q++LG   + +  L+ + +G VI LD  V E V
Sbjct: 10  PLRAKPLVPLAWSDPSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEV 69

Query: 113 DITINNQKIAKGEITIMEED 132
            I  NN  +A+GEI I ++ 
Sbjct: 70  WILANNHPVARGEIQISDDK 89


>gi|227820524|ref|YP_002824495.1| type III secretion system translocation protein, RhcQ
           [Sinorhizobium fredii NGR234]
 gi|227339523|gb|ACP23742.1| type III secretion system translocation protein, RhcQ
           [Sinorhizobium fredii NGR234]
          Length = 351

 Score = 65.7 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S  +     S+   + + ++P+++   +G     +  +  + +G V+     +   V I 
Sbjct: 263 SAMSKQQPPSSGELEPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPSLSSPVSIL 322

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141
            N + + KGE+  + E     G+RV+
Sbjct: 323 ANGRLVGKGELIRIGEG---LGIRVV 345


>gi|118591116|ref|ZP_01548515.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
 gi|118436192|gb|EAV42834.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
          Length = 88

 Score = 65.7 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           I V + ++LG   M +  L+ + +G VI LD    E V I  NN  +AKG++ ++ E   
Sbjct: 7   IKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGE--- 63

Query: 135 HFGVRVIEIL 144
             G+ + E+L
Sbjct: 64  RIGISITEVL 73


>gi|159045806|ref|YP_001534600.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
 gi|157913566|gb|ABV94999.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
          Length = 89

 Score = 65.7 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
             ++ +P+ + + +G     +  L+ L K  V+ LDKR+ + V++ +    IA+G +   
Sbjct: 10  SPLVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARG-VLEE 68

Query: 130 EEDDTHFGVRVIEILNAQ 147
           + D     VR+ E+++ +
Sbjct: 69  DADSHRLSVRLTEVISPE 86


>gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
           DSM 13965]
          Length = 321

 Score = 65.7 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + +  +P+ +Q++LG   + +  L++L+ G V+ LD R G  VDI +  +   +G
Sbjct: 231 EGLRQVPLPVQVVLGRAQLTVRQLLDLAPGHVLPLDTRAGSLVDILVGGRLKFRG 285


>gi|317121825|ref|YP_004101828.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
           DSM 12885]
 gi|315591805|gb|ADU51101.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
           DSM 12885]
          Length = 322

 Score = 65.3 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           + + ++P+ + ++LG   + +  L+ L  G V+ LD R G  VD+ +  +   +G   + 
Sbjct: 231 EGLRHVPLPVTVVLGRTRLTVRELLALEPGQVLRLDTRAGGLVDVLVAGRPKFRG---LP 287

Query: 130 EEDDTHFGVRVIEILNAQ 147
                   V+V+E +  +
Sbjct: 288 GRAGPRLAVQVVERVAEE 305


>gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
          Length = 105

 Score = 65.3 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
             +   +  + V++ ++LG   + I   + + +G VI LD    + V I  NN  IA+GE
Sbjct: 22  AHSMSQLGAVQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAAEHDEVWILANNHPIARGE 81

Query: 126 ITIMEEDDTHFGVRVIE 142
           I I  +      V + +
Sbjct: 82  IIIQGD---RVAVSITD 95


>gi|168699680|ref|ZP_02731957.1| hypothetical protein GobsU_09164 [Gemmata obscuriglobus UQM 2246]
          Length = 117

 Score = 64.9 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
           ++PT+ ++  +     +                     + + ++P+ +   LG   + I 
Sbjct: 4   TTPTDPADPGVVARQAE-----FPRLEPRAGTGPGSTLESLRDVPITITARLGRAVLPIG 58

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            ++ L  G V+ L++ +   V++T+     A      +     HF VR+  +L  
Sbjct: 59  EILTLGPGSVVELEEVISAPVELTVRGVPFAV---GEVVVVGEHFAVRIKNLLPP 110


>gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
           4222]
 gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
           4222]
          Length = 544

 Score = 64.9 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 452 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 511

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 512 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 541


>gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842]
 gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842]
          Length = 545

 Score = 64.9 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542


>gi|330963707|gb|EGH63967.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 356

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 65  STDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ++ + D  + ++P+ +   LG+  + ++ L  ++ G ++ L     + VD+ +N ++I +
Sbjct: 277 ASPDLDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGR 336

Query: 124 GEITIMEEDDTHFGVRV 140
           G++  + +     GVR+
Sbjct: 337 GQLVSIGDG---LGVRL 350



 Score = 35.2 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK--IAK--GE 125
           D ++ + ++M +  G   +  S L +L  GDV+ LD      V + + +    +A+  GE
Sbjct: 187 DPLVAVRLQMSVEAGQAPLNTSELRSLVPGDVVMLDTLPDAQVQLRLGSHCQTVARRQGE 246


>gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
 gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
          Length = 545

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542


>gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1]
          Length = 545

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           ++PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E
Sbjct: 455 AQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDE 514

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            + I +N+  +A GE+  ++     FGV+V 
Sbjct: 515 PIRIYVNDVLVAYGELVNVD---GFFGVKVT 542


>gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 545

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542


>gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
 gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
 gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 545

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542


>gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
 gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
 gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
 gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
 gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
 gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
 gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
 gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
          Length = 545

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542


>gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 544

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 452 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 511

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 512 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 541


>gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 546

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
 gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
          Length = 545

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  +      FGV+V 
Sbjct: 513 DEPIRIYVNDVLVAYGELVNVN---GFFGVKVT 542


>gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
 gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
          Length = 547

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 455 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 514

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 515 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544


>gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
 gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
          Length = 547

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 455 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 514

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 515 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544


>gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
 gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
 gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 546

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|163738044|ref|ZP_02145460.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
 gi|163742560|ref|ZP_02149946.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
           2.10]
 gi|161384145|gb|EDQ08528.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
           2.10]
 gi|161388660|gb|EDQ13013.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
          Length = 98

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
           G     I +LVNL +  ++TLDKRV + VD+ + ++ +A+G++  ME E      VR+ E
Sbjct: 30  GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89

Query: 143 ILNAQ 147
           I + Q
Sbjct: 90  IADLQ 94


>gi|330876195|gb|EGH10344.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 356

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 65  STDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ++ + D  + ++P+ +   LG+  + ++ L  ++ G ++ L     + VD+ +N ++I +
Sbjct: 277 ASPDLDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGR 336

Query: 124 GEITIMEEDDTHFGVRV 140
           G++  + +     GVR+
Sbjct: 337 GQLVSIGDG---LGVRL 350



 Score = 35.2 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAK--GE 125
           D ++ + +++ +  G   +  S L +L  GDV+ LD      V + + +  Q +A+  GE
Sbjct: 187 DPLVAVRLQLSVEAGQAPLNTSELRSLVPGDVVMLDTLPDAQVQLRLGSHCQTVARRQGE 246


>gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
 gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
          Length = 546

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
 gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
          Length = 546

 Score = 64.5 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 546

 Score = 64.5 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  +      FGV+V 
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVN---GFFGVKVT 543


>gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264]
 gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
          Length = 546

 Score = 64.5 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
 gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
          Length = 546

 Score = 64.5 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
 gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579]
 gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
          Length = 546

 Score = 64.5 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
          Length = 546

 Score = 64.5 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 546

 Score = 64.5 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1]
          Length = 546

 Score = 64.5 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
 gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
          Length = 547

 Score = 64.5 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 518 IRIYVNDVLVAYGELVNVD---GFFGVKVT 544


>gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 547

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 518 IRIYVNDVLVAYGELVNVD---GFFGVKVT 544


>gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
 gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
          Length = 548

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 459 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 518

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 519 IRIYVNDVLVAYGELVNVD---GFFGVKVT 545


>gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
 gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
          Length = 548

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
             + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ 
Sbjct: 455 APVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDED 514

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + E + I +N+  +A GE+  ++     FGV++ 
Sbjct: 515 IDEPIQIYVNDVLVAYGELVNVD---GFFGVKMT 545


>gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
 gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis
           KBAB4]
 gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
          Length = 548

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
             + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ 
Sbjct: 455 APVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDED 514

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 515 IDEPIQIYVNDVLVAYGELVNVD---GFFGVKVT 545


>gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
 gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187]
 gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
          Length = 546

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
 gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
          Length = 546

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus
           NVH0597-99]
 gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus
           NVH0597-99]
 gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 546

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
 gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
 gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam]
 gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
 gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
          Length = 547

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 518 IRIYVNDVLVAYGELVNVD---GFFGVKVT 544


>gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
 gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
          Length = 546

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
 gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation
           [Bacillus anthracis str. A2012]
 gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W]
 gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str.
           CDC 684]
 gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str.
           A0248]
 gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
 gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
 gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
 gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str.
           Ames]
 gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str.
           Sterne]
 gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L]
 gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W]
 gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str.
           CDC 684]
 gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str.
           A0248]
          Length = 546

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
 gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
 gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
 gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
          Length = 547

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
              + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+
Sbjct: 453 AAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            + E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 513 DIDEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544


>gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241]
 gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241]
          Length = 546

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia
           94]
          Length = 546

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
 gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
          Length = 546

 Score = 64.5 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|218672164|ref|ZP_03521833.1| flagellar motor switch protein [Rhizobium etli GR56]
          Length = 142

 Score = 64.1 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D+P    +                    S    +    +    T NF++IM+IP+ +QI+
Sbjct: 54  DSPFGGDDFGGDFGAGNASPAAGMDFGGSSSFEASPAPLGSALTSNFEMIMDIPIDVQIM 113

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGES 111
           LG+  MQ+S L+NL++G  I LDK++GE 
Sbjct: 114 LGTSRMQVSGLMNLNEGATIALDKKIGEP 142


>gi|254475007|ref|ZP_05088393.1| Surface presentation of antigens protein [Ruegeria sp. R11]
 gi|214029250|gb|EEB70085.1| Surface presentation of antigens protein [Ruegeria sp. R11]
          Length = 98

 Score = 64.1 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
           G     I +LVNL +  ++TLDKRV + VD+ + ++ +A+G++  ME E      VR+ E
Sbjct: 30  GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89

Query: 143 ILNAQ 147
           I + Q
Sbjct: 90  IADLQ 94


>gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
 gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
          Length = 548

 Score = 64.1 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
             + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ 
Sbjct: 455 APVVQPIEYKEVKQVEPVYMDASILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDED 514

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 515 IDEPIQIYVNDVLVAYGELVNVD---GFFGVKVT 545


>gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 546

 Score = 64.1 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
 gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
 gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
 gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
          Length = 548

 Score = 64.1 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 459 QPIEYQEVKQVEPVYMDASILKNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEP 518

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 519 IQIYVNDVLVAYGELVNVD---GFFGVKVT 545


>gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820]
 gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
 gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820]
 gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
 gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 546

 Score = 64.1 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ + E 
Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + I +N+  +A GE+  ++     FGV+V 
Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543


>gi|304321126|ref|YP_003854769.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
           HTCC2503]
 gi|303300028|gb|ADM09627.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
           HTCC2503]
          Length = 90

 Score = 64.1 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 37/81 (45%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
                N   + +I + + +++G   M +  L   +   V+ L  R  E V++ ++ Q IA
Sbjct: 4   SAKAQNKQPLYDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVVDGQVIA 63

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE+   +       +R++++
Sbjct: 64  TGELCEGDTGPESLALRILDL 84


>gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces
           limnophilus DSM 3776]
 gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces
           limnophilus DSM 3776]
          Length = 396

 Score = 64.1 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN--- 68
            +  +  S     P   T V+   +  + L+   +     +P+ S +    E        
Sbjct: 248 TERRQNSSAERQLPDSQTAVAPVDSPVDDLLSNYEGLAAQDPMESAAPLAQETMPQQSVT 307

Query: 69  ----FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                  +  + V++ + L    M ++ L+ LS G ++T  K   + +DI I N++ A+G
Sbjct: 308 SQLMLQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQG 367

Query: 125 EITIMEEDDTHFGVRVI 141
           E   + E   HFGV+V 
Sbjct: 368 EAVKIGE---HFGVKVN 381


>gi|255654316|ref|ZP_05399725.1| flagellar motor switch protein [Clostridium difficile QCD-23m63]
 gi|296452606|ref|ZP_06894300.1| flagellar motor switch protein [Clostridium difficile NAP08]
 gi|296880982|ref|ZP_06904928.1| flagellar motor switch protein [Clostridium difficile NAP07]
 gi|296258567|gb|EFH05468.1| flagellar motor switch protein [Clostridium difficile NAP08]
 gi|296428003|gb|EFH13904.1| flagellar motor switch protein [Clostridium difficile NAP07]
          Length = 104

 Score = 64.1 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + N  V + + +G+    I N+++L +G +I L+K V E +DI  N++  A GE  I  E
Sbjct: 30  VFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESIITNE 89

Query: 132 DDTHFGVRVIEILNA 146
                 VR+ +I ++
Sbjct: 90  ---KLSVRLSKIEDS 101


>gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus
           cytotoxicus NVH 391-98]
          Length = 119

 Score = 64.1 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
              E++  + D + +I +++ + LG   +Q+ ++ NL  GDV+ ++K +G  VD+ +++ 
Sbjct: 19  QREEQAKAHIDTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEVEKNLGHKVDVYLSDI 78

Query: 120 KIAKGEITIMEEDDTHFGVRVIEI 143
           K+  GE  +M+E    FG+ + EI
Sbjct: 79  KVGIGEAIVMDE---QFGIIISEI 99


>gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
 gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
          Length = 547

 Score = 63.7 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
              + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+
Sbjct: 453 AAPVVQPIEFKEVKQIEPVYIDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            + E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 513 DIDEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544


>gi|254470456|ref|ZP_05083860.1| putative surface presentation of antigens protein [Pseudovibrio sp.
           JE062]
 gi|211960767|gb|EEA95963.1| putative surface presentation of antigens protein [Pseudovibrio sp.
           JE062]
          Length = 88

 Score = 63.7 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +I V + ++LG   M +  L+ + +G VI LD    + V I  NN  +A+G++T++ +  
Sbjct: 6   DISVDISVVLGKSEMPVHQLLRMGRGAVIELDTHEADDVTILANNTPVAEGQVTVVGD-- 63

Query: 134 THFGVRVIEIL 144
              G+ + ++L
Sbjct: 64  -KVGIVITKVL 73


>gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 318

 Score = 63.7 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            + +PI       +E    +  ++ N+ + ++ + GS    I ++++L + + + LD+ +
Sbjct: 226 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 285

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            E + I +N+  +A GE+  ++     FGV+V 
Sbjct: 286 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 315


>gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
           DSM 16646]
 gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
           DSM 16646]
          Length = 331

 Score = 63.7 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + N+  +++  +G   + +   ++L  GDVI LDK +   VD+ + ++   KG   IM +
Sbjct: 254 LENVNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEVDVYVYDKLKYKG---IMGK 310

Query: 132 DDTHFGVRVIEILNAQ 147
            +  F VR+ ++++ +
Sbjct: 311 RNGRFAVRINKVISER 326


>gi|13475304|ref|NP_106868.1| translocation protein in type III secretion system, hrcQ
           [Mesorhizobium loti MAFF303099]
 gi|14026055|dbj|BAB52654.1| translocation protein in type III secretion system; HrcQ
           [Mesorhizobium loti MAFF303099]
          Length = 354

 Score = 63.7 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91
           +S     + L+        S  + +     L       + + ++ + +    G   + + 
Sbjct: 241 ASADLEGDQLVLHGPFRPRSYSLENAHMTQLGSQLGPTEDLDDVEIMLVFECGRWPIPLG 300

Query: 92  NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
            L +  +G +  L + + + VDI  N Q I +G+I  + +     G+R+
Sbjct: 301 ELRSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRIGDT---LGIRL 346


>gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 351

 Score = 63.7 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 67  DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            + D  ++ +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ +N ++I +GE
Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333

Query: 126 ITIMEEDDTHFGVRV 140
           +  + +     GVR+
Sbjct: 334 LVSIGDG---LGVRL 345



 Score = 34.1 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
           ++NPL+      P       ++ +   + ++ + +  +          D ++   + + +
Sbjct: 137 LENPLRLALEVRPDEGQAQTLEIHLNADSAQHVIALLDRNAVTRPQPLDALV---LTLSV 193

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
             G   +  + L +L  GDV+ LD      V
Sbjct: 194 EAGQAPLTTAELHSLVPGDVVMLDTLADTQV 224


>gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 351

 Score = 63.7 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 67  DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            + D  ++ +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ +N ++I +GE
Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333

Query: 126 ITIMEEDDTHFGVRV 140
           +  + +     GVR+
Sbjct: 334 LVSIGDG---LGVRL 345


>gi|149177723|ref|ZP_01856323.1| probable flagellar motor switch protein fliN [Planctomyces maris
           DSM 8797]
 gi|148843373|gb|EDL57736.1| probable flagellar motor switch protein fliN [Planctomyces maris
           DSM 8797]
          Length = 295

 Score = 63.7 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIIL 83
           PL    V+           +    +  +            S  N  + I  +PV+  + L
Sbjct: 166 PLTKPPVTESVEPEADPAPQPSPSSTPQATPQMVQATPANSNRNPLNRISKLPVQAIVKL 225

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
            S  ++++ L+++  G +IT DK   + +++ INNQ    GE   + E   HFG+++
Sbjct: 226 ASKKIEMNQLLSICPGSLITFDKPCEDPLELYINNQVYCLGEAVKIGE---HFGLKI 279


>gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 351

 Score = 63.3 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 67  DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            + D  ++ +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ +N ++I +GE
Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333

Query: 126 ITIMEEDDTHFGVRV 140
           +  + +     GVR+
Sbjct: 334 LVSIGDG---LGVRL 345



 Score = 34.1 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
           ++NPL+      P       ++ +   + ++ + +  +          D ++   + + +
Sbjct: 137 LENPLRLALEVRPDEGQAQTLEIHLNADSAQHVIALLDRNAVTRPQPLDALV---LTLSV 193

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
             G   +  + L +L  GDV+ LD      V
Sbjct: 194 EAGQAPLTTAELHSLVPGDVVMLDTLADTQV 224


>gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 344

 Score = 63.3 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 67  DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            + D  ++ +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ +N ++I +GE
Sbjct: 267 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 326

Query: 126 ITIMEEDDTHFGVRV 140
           +  + +     GVR+
Sbjct: 327 LVSIGDG---LGVRL 338


>gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 351

 Score = 63.3 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 67  DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            + D  ++ +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ +N ++I +GE
Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333

Query: 126 ITIMEEDDTHFGVRV 140
           +  + +     GVR+
Sbjct: 334 LVSIGDG---LGVRL 345



 Score = 34.1 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + + +  G   +  + L +L  GDV+ LD      V
Sbjct: 189 LTLSVEAGQAPLTTAELHSLVPGDVVMLDTLADTQV 224


>gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15]
 gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000]
 gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15]
 gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000]
          Length = 103

 Score = 63.3 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + V++ ++LG   + +  L+ + +G VI LD +  + V I  NN  IA+GEI I ++   
Sbjct: 27  VNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQISDD--- 83

Query: 135 HFGVRVI 141
              ++V 
Sbjct: 84  RIAIQVT 90


>gi|255099392|ref|ZP_05328369.1| flagellar motor switch protein [Clostridium difficile QCD-63q42]
          Length = 104

 Score = 63.3 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + N  V + + +G+    I N+++L +G +I L K V E +DI  N++  A GE  I  E
Sbjct: 30  VFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESIITNE 89

Query: 132 DDTHFGVRVIEILNA 146
                 VR+ +I + 
Sbjct: 90  ---RLSVRLSKIEDP 101


>gi|283780013|ref|YP_003370768.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi
           DSM 6068]
 gi|283438466|gb|ADB16908.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi
           DSM 6068]
          Length = 329

 Score = 63.3 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
            S P S +    + K       I+ I V +++ L +  + +  +V L  G +I  +K   
Sbjct: 218 ASPPPSDNVEERIYKLPPYTRSILRIEVPVRVTLATTQLPLKRIVELGPGSIIQFEKPCD 277

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
             + + +   ++A GE   + E    FG+R+  ++  
Sbjct: 278 SELSLQVGEHEVAIGEAVKVGE---KFGLRLTSMVMP 311


>gi|254465587|ref|ZP_05078998.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
 gi|206686495|gb|EDZ46977.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
          Length = 98

 Score = 63.3 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
           G     I +LV+L +  ++TLDKRV + VD+ + ++ +A+G++  +E E      VR+ E
Sbjct: 30  GKARPLIRDLVSLGENAILTLDKRVEDPVDLYVGDRLVARGQLEELEGEQAGQLAVRLTE 89

Query: 143 ILNAQ 147
           I + Q
Sbjct: 90  IADLQ 94


>gi|126738562|ref|ZP_01754267.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
 gi|126720361|gb|EBA17067.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
          Length = 98

 Score = 63.3 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142
           G     I +LV L +  ++TLDKRV + VD+ + ++ +A+G++  M+ E      VR+ E
Sbjct: 30  GKARPLIRDLVGLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMDGEQAGQLAVRLTE 89

Query: 143 ILNAQ 147
           I + Q
Sbjct: 90  IADLQ 94


>gi|328468942|gb|EGF39902.1| type III secretion system protein [Vibrio parahaemolyticus 10329]
          Length = 321

 Score = 63.0 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV++   +G   + +  L  L  G V  L++ V + V +  N + I + E+  + +  
Sbjct: 247 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 304

Query: 134 THFGVRVIEILN 145
            H GVRV+E+  
Sbjct: 305 -HLGVRVLELFG 315


>gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 301

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 67  DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            + D  ++ +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ +N ++I +GE
Sbjct: 224 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 283

Query: 126 ITIMEEDDTHFGVRV 140
           +  + +     GVR+
Sbjct: 284 LVSIGDG---LGVRL 295



 Score = 33.7 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + + +  G   +  + L +L  GDV+ LD      V
Sbjct: 139 LTLSVEAGQAPLTTAELHSLVPGDVVMLDTLADTQV 174


>gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 301

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 67  DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
            + D  ++ +P+ +   LGS  + ++ L  ++ G ++ L     + VD+ +N ++I +GE
Sbjct: 224 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 283

Query: 126 ITIMEEDDTHFGVRV 140
           +  + +     GVR+
Sbjct: 284 LVSIGDG---LGVRL 295


>gi|28898445|ref|NP_798050.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806662|dbj|BAC59934.1| putative translocation protein in type III secretion [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 328

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV++   +G   + +  L  L  G V  L++ V + V +  N + I + E+  + +  
Sbjct: 254 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 311

Query: 134 THFGVRVIEILN 145
            H GVRV+E+  
Sbjct: 312 -HLGVRVLELFG 322


>gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 326

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            +S+P   D    L       ++I +I V++  +LG   + I  ++  + GDVI L +R 
Sbjct: 231 GVSKPTPDDWKTTL------MEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSRRS 284

Query: 109 GESVDITINNQKIAKG 124
            E VD+ +     AKG
Sbjct: 285 DEEVDLLVEGNLFAKG 300


>gi|260365111|ref|ZP_05777682.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus K5030]
 gi|260876606|ref|ZP_05888961.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AN-5034]
 gi|260895033|ref|ZP_05903529.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus Peru-466]
 gi|260900956|ref|ZP_05909351.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ4037]
 gi|308086011|gb|EFO35706.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus Peru-466]
 gi|308093588|gb|EFO43283.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AN-5034]
 gi|308110725|gb|EFO48265.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ4037]
 gi|308111696|gb|EFO49236.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus K5030]
          Length = 321

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV++   +G   + +  L  L  G V  L++ V + V +  N + I + E+  + +  
Sbjct: 247 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 304

Query: 134 THFGVRVIEILN 145
            H GVRV+E+  
Sbjct: 305 -HLGVRVLELFG 315


>gi|153836164|ref|ZP_01988831.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ3810]
 gi|149750439|gb|EDM61184.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ3810]
          Length = 321

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV++   +G   + +  L  L  G V  L++ V + V +  N + I + E+  + +  
Sbjct: 247 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 304

Query: 134 THFGVRVIEILN 145
            H GVRV+E+  
Sbjct: 305 -HLGVRVLELFG 315


>gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 78

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            + + N+ V++ ++LG   M I  L+ + +G VI L  R  E + +  NN  IA+GEI +
Sbjct: 1   MNSVNNVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIV 60

Query: 129 MEEDDTHFGVRVIEIL 144
             E      V +  +L
Sbjct: 61  QGE---RVAVSITTVL 73


>gi|254228244|ref|ZP_04921673.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
           Ex25]
 gi|262394134|ref|YP_003285988.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
 gi|151939317|gb|EDN58146.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
           Ex25]
 gi|262337728|gb|ACY51523.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
          Length = 322

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV++   +G   + +  L  L  G V  L++ V + V +  N + I + E+  + E  
Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNE-- 305

Query: 134 THFGVRVIEILN 145
            H GVRV+E+  
Sbjct: 306 -HLGVRVLELFG 316


>gi|254973889|ref|ZP_05270361.1| flagellar motor switch protein [Clostridium difficile QCD-66c26]
 gi|255091274|ref|ZP_05320752.1| flagellar motor switch protein [Clostridium difficile CIP 107932]
 gi|255305249|ref|ZP_05349421.1| flagellar motor switch protein [Clostridium difficile ATCC 43255]
 gi|255312933|ref|ZP_05354516.1| flagellar motor switch protein [Clostridium difficile QCD-76w55]
 gi|255515692|ref|ZP_05383368.1| flagellar motor switch protein [Clostridium difficile QCD-97b34]
 gi|255648786|ref|ZP_05395688.1| flagellar motor switch protein [Clostridium difficile QCD-37x79]
 gi|260682006|ref|YP_003213291.1| flagellar motor switch protein [Clostridium difficile CD196]
 gi|260685604|ref|YP_003216737.1| flagellar motor switch protein [Clostridium difficile R20291]
 gi|306518903|ref|ZP_07405250.1| flagellar motor switch protein [Clostridium difficile QCD-32g58]
 gi|260208169|emb|CBA60487.1| flagellar motor switch protein [Clostridium difficile CD196]
 gi|260211620|emb|CBE01855.1| flagellar motor switch protein [Clostridium difficile R20291]
          Length = 104

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + N  V + + +G+    I N+++L +G +I L K V E +DI  N++  A GE  I  E
Sbjct: 30  VFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESIITNE 89

Query: 132 DDTHFGVRVIEILNA 146
                 VR+ +I ++
Sbjct: 90  ---KLSVRLSKIEDS 101


>gi|91224471|ref|ZP_01259733.1| type III secretion protein [Vibrio alginolyticus 12G01]
 gi|91190813|gb|EAS77080.1| type III secretion protein [Vibrio alginolyticus 12G01]
          Length = 322

 Score = 62.2 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV++   +G   + +  L  L  G V  L++ V + V +  N + I + E+  + E  
Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNE-- 305

Query: 134 THFGVRVIEILN 145
            H GVRV+E+  
Sbjct: 306 -HLGVRVLELFG 316


>gi|262284526|gb|ACY41063.1| VscQ [Vibrio alginolyticus]
          Length = 322

 Score = 62.2 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV++   +G   + +  L  L  G V  L++ V + V +  N + I + E+  + E  
Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNE-- 305

Query: 134 THFGVRVIEILN 145
            H GVRV+E+  
Sbjct: 306 -HLGVRVLELFG 316


>gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
 gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
          Length = 165

 Score = 62.2 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            ++   EP  + +  + ++   +     +IP+ + + +G   M +  L++L  G+ I LD
Sbjct: 70  PIEESEEPALAAAQIVPDEEKLSAISPNDIPLSIILEVGRLKMSMQTLMDLQPGNTIELD 129

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            R    +D+ +N  ++AKGE+  + E   + G+R++E+
Sbjct: 130 IRPESGIDLVVNGSRVAKGELLQVGE---NLGIRILEL 164


>gi|254418697|ref|ZP_05032421.1| Surface presentation of antigens protein, putative [Brevundimonas
           sp. BAL3]
 gi|196184874|gb|EDX79850.1| Surface presentation of antigens protein, putative [Brevundimonas
           sp. BAL3]
          Length = 83

 Score = 61.4 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + V++ ++LG   + +S L+ + +G VI LD   G+ V I  NN  +A+GE   +E  D 
Sbjct: 7   VDVEISVVLGRMVLPMSQLLRMGRGAVIPLDASEGDEVWILANNHPVARGE---IEIRDD 63

Query: 135 HFGVRVI 141
              + V 
Sbjct: 64  RIAITVT 70


>gi|83646772|ref|YP_435207.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
 gi|83634815|gb|ABC30782.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
          Length = 111

 Score = 61.4 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V+ +     ++     +  +D  DL+ N+ V + + LG   + ++ L  L+   V+ ++K
Sbjct: 16  VEEVILEPMNEGGAGDKLKSDPLDLVKNVKVTLDVYLGDANLTVAELTALTSESVVKMNK 75

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           ++ + +++ ++ + +A+G++  +++    FG+++ E
Sbjct: 76  QLNDPIELLLDGKVVARGKLVAVDDV---FGIQITE 108


>gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 332

 Score = 61.4 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + +   LGS  + +   + L  GD+I LDK   E VDI I+ +   +G   I    +  +
Sbjct: 260 IPLTAQLGSTTITVKEFLELEIGDIIMLDKHFKEPVDIIIDKKVKFRG---IPGIKNNKY 316

Query: 137 GVRVIEIL 144
            VR+ E++
Sbjct: 317 SVRITEVI 324


>gi|119385378|ref|YP_916434.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
 gi|119375145|gb|ABL70738.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
          Length = 85

 Score = 61.4 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            I V++ I LG   + ++ L  L   D++TLD+ + + V+I + ++ IA+GE+   +E D
Sbjct: 12  QIQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVSGDETD 71

Query: 134 THFGVRV 140
               VR+
Sbjct: 72  NRLCVRI 78


>gi|1648935|gb|AAB17683.1| putative [Sinorhizobium fredii]
 gi|19749327|gb|AAL98697.1| Y4yK [Sinorhizobium fredii]
 gi|52631920|gb|AAU85370.1| RhcQ [Sinorhizobium fredii]
          Length = 382

 Score = 61.4 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           +      + L+ +      S P+     +++ + L  S  + D   +I + +    G   
Sbjct: 268 TRADLEGDHLVLRGPFRPQSRPLEYAHMTETESQLRPSDADLD---DIEIVLVFECGRWP 324

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + + +L +   G V  L + +   VDI  N + I +G+I  + ++    G+R+
Sbjct: 325 ISLGDLRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDE---LGIRL 374


>gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
           ATCC 21756]
 gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
           ATCC 21756]
          Length = 83

 Score = 61.4 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + V++ ++LG   + +  L+ + +G VI LD +  + V I  NN  IA+GEI I ++   
Sbjct: 7   VNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQISDD--- 63

Query: 135 HFGVRVI 141
              ++V 
Sbjct: 64  RIAIQVT 70


>gi|325107429|ref|YP_004268497.1| surface presentation of antigens (SPOA) protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967697|gb|ADY58475.1| surface presentation of antigens (SPOA) protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 295

 Score = 61.0 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +MN+ VK+ + L    +++S L+NL  G ++   K   + +D+ +NN+  A+GE   + E
Sbjct: 214 LMNLNVKVSVRLAEMKIELSTLINLCPGTLLVFPKSCDDLLDLYVNNRLYAQGEAVKIGE 273

Query: 132 DDTHFGVRVIEI 143
               FG++V EI
Sbjct: 274 ---KFGLKVNEI 282


>gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31]
 gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp.
           K31]
          Length = 83

 Score = 61.0 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + V++ ++LG   + +  L+ + +G VI LD +  + V I  NN  IA+GEI I ++   
Sbjct: 7   VNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQISDD--- 63

Query: 135 HFGVRVI 141
              ++V 
Sbjct: 64  RIAIQVT 70


>gi|307264879|ref|ZP_07546441.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920137|gb|EFN50349.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 332

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + +   LGS  + +   +    GD+I LDK   E VDI I+ +   +G   I    +  +
Sbjct: 260 IPLTAQLGSTTITVKEFLEFEIGDIIMLDKHFKEPVDIIIDKKVKFRG---IPGIKNNKY 316

Query: 137 GVRVIEIL 144
            VR+ E++
Sbjct: 317 SVRITEVI 324


>gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio
           ammonificans HB-1]
 gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio
           ammonificans HB-1]
          Length = 83

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
            + ++ T+  +   +I +K+ +++G   M  S ++ L +GD+ITLDK++ + +++T+N+Q
Sbjct: 2   EVEKELTEKLERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLNDQ 61

Query: 120 KIAKGEITIMEEDDTHFGVRVIEIL 144
           +   GE+ ++ +      +R+++++
Sbjct: 62  EFGIGELIVIND---KVSLRLVDLV 83


>gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
 gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
          Length = 98

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +      + T +   + NI V + + LG   M + ++  L+ GD++ ++K+ G  V+I +
Sbjct: 14  EPVPKGNRDTGDLKQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFL 73

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + +K+  GE  +M+E   +FG+ + EI
Sbjct: 74  DEKKVGIGEAILMDE---NFGIVISEI 97


>gi|126697799|ref|YP_001086696.1| flagellar motor switch protein [Clostridium difficile 630]
 gi|115249236|emb|CAJ67049.1| Flagellar motor switch protein FliN [Clostridium difficile]
          Length = 104

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + N  V + + +G+    I N+++L +G +I L+K V E +DI  N++  A GE  I  E
Sbjct: 30  VFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESIITNE 89

Query: 132 DDTHFGVRVIEILNA 146
                 VR+ +I ++
Sbjct: 90  T---LSVRLSKIEDS 101


>gi|16520043|ref|NP_444163.1| component RhcQ of type III secretion apparatus [Sinorhizobium
           fredii NGR234]
 gi|2494558|sp|P55719|Y4YK_RHISN RecName: Full=Probable translocation protein Y4yK
 gi|2182736|gb|AAB91950.1| component RhcQ of type III secretion apparatus [Sinorhizobium
           fredii NGR234]
          Length = 358

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 32  SSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87
           +      + L+ +      S P+     ++  + L  S  + D   +I + +    G   
Sbjct: 244 TRADLEGDHLVLRGPFRPQSRPLECAHMTEIESQLRPSDADLD---DIEIVLVFECGRWP 300

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + +  L +   G V  L + +   VDI  N + I +G+I  + +D    G+R+
Sbjct: 301 ISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDD---LGIRL 350


>gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
 gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
 gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
 gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
 gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
 gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
 gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 332

 Score = 59.9 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + +   LGS  + +   ++   GD+I LDK   E VDI I+ +   +G   I    +  +
Sbjct: 260 IPLTAQLGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIIDKKVKFRG---IPGIKNNKY 316

Query: 137 GVRVIEIL 144
            VR+ E++
Sbjct: 317 SVRITEVI 324


>gi|85060063|ref|YP_455765.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
 gi|45504774|gb|AAS66864.1| SpaO [Sodalis glossinidius]
 gi|84780583|dbj|BAE75360.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
          Length = 338

 Score = 59.9 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 37  NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
           +    +     D ++    + +  +        D + N+P+ ++ IL    + +  +   
Sbjct: 227 SGAAAVHPKVRDGLAAAAPTPTGRLALGDDTAADPLANLPLTLEFILQRRYLSLGEIQQF 286

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +G V+ LD    + ++I  N   +A GE+  +E+     GV ++E+
Sbjct: 287 RQGKVLELDPEGEKHIEIRANGHLLALGELVQLED---RLGVELMEL 330


>gi|222082188|ref|YP_002541553.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Agrobacterium radiobacter K84]
 gi|221726867|gb|ACM29956.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Agrobacterium radiobacter K84]
          Length = 336

 Score = 59.9 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +S+++ +   +       I +IPVK+   +    + +S L ++++G V  LD+   ++V+
Sbjct: 248 MSNETIDQDLQGAPTIASIGDIPVKLVFDIARIELPLSELESIAEGHVFPLDRPKQDAVE 307

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVI 141
           I    + I +GEI  ++       VRV 
Sbjct: 308 IVTQGRIIGRGEIVTLDGLT---AVRVT 332


>gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
 gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
          Length = 334

 Score = 59.5 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 58  SNNILEKSTDNFDLIM----NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           SN   E++  + + I       P+++   +G   + +++L+ L  GDVI LDK+  E VD
Sbjct: 236 SNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVD 295

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
           I I      +G   +    + H  V++ ++++
Sbjct: 296 IRIGKNVKFQG---VAGVSNKHMAVKITDVIS 324


>gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
 gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
          Length = 83

 Score = 59.1 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + V++ ++LG   + +  L+ + +G VI LD    + V I  NN  +A+GE   +E  D 
Sbjct: 7   VDVEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGE---IEIRDD 63

Query: 135 HFGVRVI 141
              + V 
Sbjct: 64  RIAITVT 70


>gi|269967238|ref|ZP_06181302.1| type III secretion protein [Vibrio alginolyticus 40B]
 gi|269828094|gb|EEZ82364.1| type III secretion protein [Vibrio alginolyticus 40B]
          Length = 322

 Score = 59.1 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV++   +G   + +  L  L  G V  L++ V + V +  N + I + E+  + E  
Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKLVTLRANGKIIGECELVNVNE-- 305

Query: 134 THFGVRVIEILN 145
            H GVRV+E+  
Sbjct: 306 -HLGVRVVELFG 316


>gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814]
 gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica
           ATCC 49814]
          Length = 80

 Score = 59.1 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + +++ ++LG   + +  L+ + +G VI LD    + V I  NN  IA+GE+ I  E
Sbjct: 4   VEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVIDGE 60


>gi|312883879|ref|ZP_07743596.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368337|gb|EFP95872.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 321

 Score = 58.7 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV++   +G   + +  L +L  G    L++ +   V +  N + I + E+  + E  
Sbjct: 247 QLPVELTFDVGQQTITLEQLNSLQPGFTFELNQPISSPVTMRANGKIIGECELVNINE-- 304

Query: 134 THFGVRVIEILNA 146
              GVRVIE+L  
Sbjct: 305 -RLGVRVIELLGE 316


>gi|330953281|gb|EGH53541.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 85

 Score = 58.7 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
            LGS  + ++ L  ++ G V+    +  + VD+ +N ++I +GE+  + +     GVR+
Sbjct: 24  QLGSMELTLAQLREMAPGSVLPFTSQAHDEVDLMVNGRRIGRGELVTIGDG---LGVRL 79


>gi|269105050|ref|ZP_06157745.1| type III secretion inner membrane protein YscQ [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160685|gb|EEZ39183.1| type III secretion inner membrane protein YscQ [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 321

 Score = 58.7 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +P+++   +G   + +  L  L  G    L++ + + V +  N + I + E+  + E  
Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISDPVTMRANGKIIGECELVNINE-- 304

Query: 134 THFGVRVIEILN 145
              GVRV+E+  
Sbjct: 305 -RLGVRVLELFG 315


>gi|295696124|ref|YP_003589362.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
 gi|295411726|gb|ADG06218.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
          Length = 332

 Score = 58.7 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 16/130 (12%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           MHI  P        P  +S+ ++         +P   ++           + +   PV++
Sbjct: 214 MHIGMPHLTLERLLPKLSSQHMLGMGQAGRALDPAREEALR---------ERLRAAPVEI 264

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK--IAKGEITIMEEDDTHFG 137
           + +LG   +   +L++L+ GDVI L + V   V+I + ++   + +  +     D     
Sbjct: 265 RAVLGRTSIDFYDLMHLAAGDVIPLHQSVNRPVEIYVGDRVKYLGRPGV-----DHGRLA 319

Query: 138 VRVIEILNAQ 147
           V++ EI + +
Sbjct: 320 VQITEIADDE 329


>gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
          Length = 504

 Score = 58.3 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + + + +  +   + E 
Sbjct: 371 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 430

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 431 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 486

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 487 ILVRVDD---HFGIQMTELV 503


>gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J2-064]
          Length = 99

 Score = 58.3 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           EP  S      + S    D   NI V + + LG   M + ++  LS GDV+ ++K+ G  
Sbjct: 13  EPKESSQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 69

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           V+I ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 70  VEIFLDEKKVGIGEAILMDE---NFGIVISEI 98


>gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99]
 gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220]
 gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 515

 Score = 58.3 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + + + +  +   + E 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 441

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514


>gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
          Length = 502

 Score = 58.3 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              ++ +  K D+  I EP         E  ++   ++ +IPVK++++ G+  +++   +
Sbjct: 396 AIQAQEVANKADMQEI-EPEMPLPIEEKETLSEMEAILEDIPVKLEVVFGTAKVKLETFI 454

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +  + DVI L + + E + + +N   I KG +  +++   HFG+++ E++
Sbjct: 455 SWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDD---HFGIQMTELV 501


>gi|290893997|ref|ZP_06556972.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|290556443|gb|EFD89982.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
          Length = 504

 Score = 58.3 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + + + +  +   + E 
Sbjct: 371 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKSAEPVHQAVIEEKETLSEM 430

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 431 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 486

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 487 ILVRVDD---HFGIQMTELV 503


>gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 502

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              ++ +  K D+  I EP         E  ++   ++ +IPVK++++ G+  +++   +
Sbjct: 396 AIQAQEVANKADMQEI-EPEMPLPIEEKETLSEMEAILEDIPVKLEVVFGTAKVKLETFI 454

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +  + DVI L + + E + + +N   I KG +  +++   HFG+++ E++
Sbjct: 455 SWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDD---HFGIQMTELV 501


>gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
          Length = 100

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           EP  +      + S    D   NI V + + LG   M + ++  LS GDV+ ++K+ G  
Sbjct: 14  EPKETPQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 70

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           V+I ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 71  VEIFLDEKKVGIGEAILMDE---NFGIVISEI 99


>gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland
           1988]
 gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
 gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161]
 gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
 gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
 gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e]
 gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
          Length = 99

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
           EP  +      + S    D   NI V + + LG   M + ++  LS GDV+ ++K+ G  
Sbjct: 13  EPKETPQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 69

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           V+I ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 70  VEIFLDEKKVGIGEAILMDE---NFGIVISEI 98


>gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 99

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
                 +  +   +   + NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I
Sbjct: 13  EPKETTLEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEI 72

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 73  FLDEKKVGIGEAILMDE---NFGIVISEI 98


>gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
          Length = 504

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              +    +  + + ++EP+        E  ++   ++ +IPV ++++ G+  +++   +
Sbjct: 397 EKEATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFI 456

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +  + DVI L + + E + + +N   I KG +  +++   HFG+++ E++
Sbjct: 457 SWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 503


>gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes
           Clip81459]
 gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
 gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816]
          Length = 515

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              +    +  + + ++EP+        E  ++   ++ +IPV ++++ G+  +++   +
Sbjct: 408 EKEATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFI 467

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +  + DVI L + + E + + +N   I KG +  +++   HFG+++ E++
Sbjct: 468 SWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 514


>gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes Clip81459]
 gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J1-208]
 gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes
           L99]
 gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
 gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
 gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
 gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 100

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
                +   +   +   + NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I
Sbjct: 14  EPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEI 73

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 74  FLDEKKVGIGEAILMDE---NFGIVISEI 99


>gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J1-175]
 gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262]
 gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816]
          Length = 99

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
                +   +   +   + NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I
Sbjct: 13  EPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEI 72

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 73  FLDEKKVGIGEAILMDE---NFGIVISEI 98


>gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 330

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P    E ++ K         +  +     E   +  D    IP+   + LGS  + + +L
Sbjct: 218 PHLTLEPIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTY-IPL--TVQLGSTTVTVGDL 274

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +    GDVI LDKR  E V++ I+ +   KG   I       + V++ E++
Sbjct: 275 LKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG---IPGIKSKRYSVKITEVI 322


>gi|47095266|ref|ZP_00232877.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|47016337|gb|EAL07259.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
          Length = 504

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + I   +  +   + E 
Sbjct: 371 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 430

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 431 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVMIGKG 486

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 487 ILVRVDD---HFGIQMTELV 503


>gi|254900064|ref|ZP_05259988.1| flagellar motor switch protein [Listeria monocytogenes J0161]
 gi|254911383|ref|ZP_05261395.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
 gi|254935710|ref|ZP_05267407.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|258608293|gb|EEW20901.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|293589320|gb|EFF97654.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
          Length = 515

 Score = 57.6 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + I   +  +   + E 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVMIGKG 497

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514


>gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
          Length = 514

 Score = 57.6 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              +    +  + +  +EP+        E  ++   ++ +IPV ++++ G+  +++   +
Sbjct: 407 AEKATPPAEIIEPEKPAEPVQPIVVEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFI 466

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +  + DVI L + + E + + +N   I KG +  +++   HFG+++ E++
Sbjct: 467 SWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 513


>gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
           DSM 12653]
          Length = 330

 Score = 57.6 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P    E ++ K         +  +     E   +  D    IP+   + LGS  + + +L
Sbjct: 218 PHLTLEPIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTY-IPL--TVQLGSTTVTVGDL 274

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +    GDVI LDKR  E V++ I+ +   KG   I       + V++ E++
Sbjct: 275 LKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG---IPGIKSKRYSVKITEVI 322


>gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
          Length = 502

 Score = 57.6 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 21  HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM-NIPVKM 79
            I NP     ++      +     N  +              +++    + I+ +IPVK+
Sbjct: 380 QIFNPAAAKEMAQLMLAIQAQEVANKANTQEMEPEMPLPIEEKETLSEMEAILEDIPVKL 439

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           +++ G+  +++   ++  + DVI L + + E + + +N   I KG +  +++   HFG++
Sbjct: 440 EVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKGILVRVDD---HFGIQ 496

Query: 140 VIEIL 144
           + E++
Sbjct: 497 MTELV 501


>gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 99

 Score = 57.2 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
             +      +       + NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I
Sbjct: 13  EPNETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEI 72

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 73  FLDEKKVGIGEAILMDE---NFGIVISEI 98


>gi|304311654|ref|YP_003811252.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
 gi|301797387|emb|CBL45607.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
          Length = 379

 Score = 57.2 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 27  QDTNVSSPTNN------SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ 80
           QD   SS  N       S+  +       + +  SS  + +          +  +PV++ 
Sbjct: 254 QDWEASSHENGIRLDTISKFDMTGKAKMKLDQNGSSGPSELGFMQKKKLSSLSQLPVELS 313

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDTHFGVR 139
           + +G   + +  L NL  G V  +  +  E  + + +N Q    GE+  +       GVR
Sbjct: 314 LQVGQLQITLGELENLQPGYVFPMSSQNDELTLTVLVNQQPAGLGELVSIG---NQLGVR 370

Query: 140 VIE 142
           + E
Sbjct: 371 ITE 373


>gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
 gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
          Length = 99

 Score = 57.2 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
                    +       + NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I
Sbjct: 13  EPKETTQESREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEI 72

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 73  FLDEKKVGIGEAILMDE---NFGIVISEI 98


>gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 83

 Score = 57.2 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + V++ ++LG   + +S L+ + +G VI LD    + V I  NN  +A+G   ++E  + 
Sbjct: 7   VDVELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARG---MIEIRED 63

Query: 135 HFGVRVI 141
              + V 
Sbjct: 64  RIAITVT 70


>gi|82470759|gb|ABB77411.1| HrcQ [Pantoea stewartii subsp. stewartii]
          Length = 336

 Score = 57.2 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +E   + S      S D+F L M +P+ +++  G   + +  L +L  G V+TLD     
Sbjct: 241 TEGSDAVSKREHLASDDHFSLAM-LPLSLEVRCGRTRLTLGELQHLQPGSVLTLDNMTPG 299

Query: 111 SVDITINNQKIAKGEITIME 130
             D+      IA+GE+  +E
Sbjct: 300 EADLYYGETLIAQGELVDVE 319


>gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
 gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
          Length = 99

 Score = 57.2 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
                    +       + NI V + + LG   M + ++  LS GDV+ ++K+ G  V+I
Sbjct: 13  EPKETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEI 72

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 73  FLDEKKVGIGEAILMDE---NFGIVISEI 98


>gi|188583911|ref|YP_001927356.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           populi BJ001]
 gi|179347409|gb|ACB82821.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           populi BJ001]
          Length = 101

 Score = 57.2 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V ++++LG   M +  L+ + +G VI L+    + V+I  N+  IA+G+I +        
Sbjct: 9   VDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVV---TGNRI 65

Query: 137 GVRVIEIL 144
            V V E++
Sbjct: 66  SVEVTELI 73


>gi|23009135|ref|ZP_00050297.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 101

 Score = 57.2 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V ++++LG   M +  L+ + +G VI L+    + V+I  N+  IA+G+I +        
Sbjct: 9   VDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVV---TGNRI 65

Query: 137 GVRVIEIL 144
            V V E++
Sbjct: 66  SVEVTELI 73


>gi|255026112|ref|ZP_05298098.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
          Length = 515

 Score = 56.8 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + I   +  +   + E 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514


>gi|224498782|ref|ZP_03667131.1| flagellar motor switch protein [Listeria monocytogenes Finland
           1988]
          Length = 515

 Score = 56.8 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + I   +  +   + E 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514


>gi|254830309|ref|ZP_05234964.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
          Length = 515

 Score = 56.8 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + I   +  +   + E 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514


>gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
          Length = 515

 Score = 56.8 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + I   +  +   + E 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514


>gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28]
 gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e]
 gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
          Length = 515

 Score = 56.8 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + I   +  +   + E 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++ +IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514


>gi|269963171|ref|ZP_06177506.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832135|gb|EEZ86259.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 321

 Score = 56.8 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +P+++   +G   + +  L  L  G    L++ +   V +  N + I + E+  + E  
Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 304

Query: 134 THFGVRVIEILN 145
              GVRV+E+  
Sbjct: 305 -RLGVRVLELFG 315


>gi|237678818|emb|CAQ57545.1| RhcQ protein [Bradyrhizobium elkanii]
          Length = 371

 Score = 56.8 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 38  SEMLIQKNDVDNISEPI-----SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
            E L+ +    + S P+     ++        S  + D +    + +    G   M I  
Sbjct: 262 GERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSL---EITLVFECGRWPMSIGT 318

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           L ++++G V  L + +   VDI  N Q+I +G+I  + E+     VR+
Sbjct: 319 LRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEE---LAVRL 363


>gi|163853607|ref|YP_001641650.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           extorquens PA1]
 gi|218532467|ref|YP_002423283.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|240141029|ref|YP_002965509.1| putative flagellar motor switch protein FliN [Methylobacterium
           extorquens AM1]
 gi|254563543|ref|YP_003070638.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           DM4]
 gi|163665212|gb|ABY32579.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           extorquens PA1]
 gi|218524770|gb|ACK85355.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|240011006|gb|ACS42232.1| putative flagellar motor switch protein FliN [Methylobacterium
           extorquens AM1]
 gi|254270821|emb|CAX26826.1| putative flagellar motor switch protein FliN [Methylobacterium
           extorquens DM4]
          Length = 101

 Score = 56.8 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V ++++LG   M +  L+ + +G VI L+    + V+I  N+  IA+G+I +        
Sbjct: 9   VDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVV---TGNRI 65

Query: 137 GVRVIEIL 144
            V V E++
Sbjct: 66  SVEVTELI 73


>gi|171915735|ref|ZP_02931205.1| type III secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 342

 Score = 56.8 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
                ++    I + I SD       +T+   L+  + V++  ++G+    +  L +L+ 
Sbjct: 239 AAATWQDKKLTIQQFIMSDPAP-TPAATEPLALVDQLEVELTFLVGTHAATLEQLRSLAP 297

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           G  I L     ++V I  N + I KGE+    +     GVR+ E+
Sbjct: 298 GACIELPTPASQAVTICANGRAIGKGELL---DIGNRIGVRITEL 339


>gi|163802008|ref|ZP_02195904.1| type III secretion protein [Vibrio sp. AND4]
 gi|159174149|gb|EDP58957.1| type III secretion protein [Vibrio sp. AND4]
          Length = 321

 Score = 56.8 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
           S   + +  +DN +  I    +N+ +  S++       +P+++   +G   + +  L  L
Sbjct: 210 SSQNLWRGQLDNTTLHIQEKESNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNAL 269

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
             G    L++ V   V +  N + I + E+  + E     GVRV+E+  
Sbjct: 270 QPGFTFELNQPVSNPVTMRANGKIIGECELVNINE---RLGVRVLELFG 315


>gi|153832536|ref|ZP_01985203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           harveyi HY01]
 gi|148871331|gb|EDL70203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           harveyi HY01]
          Length = 321

 Score = 56.4 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +P+++   +G   + +  L  L  G    L++ +   V +  N + I + E+  + E  
Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 304

Query: 134 THFGVRVIEILN 145
              GVRV+E+  
Sbjct: 305 -RLGVRVLELFG 315


>gi|156974016|ref|YP_001444923.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116]
 gi|156525610|gb|ABU70696.1| hypothetical protein VIBHAR_01727 [Vibrio harveyi ATCC BAA-1116]
          Length = 322

 Score = 56.4 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +P+++   +G   + +  L  L  G    L++ +   V +  N + I + E+  + E  
Sbjct: 248 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 305

Query: 134 THFGVRVIEILN 145
              GVRV+E+  
Sbjct: 306 -RLGVRVLELFG 316


>gi|116872089|ref|YP_848870.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740967|emb|CAK20087.1| flagellar motor switch domain protein [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 512

 Score = 56.4 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95
             +  L    + +   EP+  +   + E       ++ +IPV ++++ G+  +++   ++
Sbjct: 410 EEATTLTAAVEPEKPVEPVVEEKETLSEMEQ----ILEDIPVTLEVVFGTAKVKLEKFIS 465

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
             + DV+ L + + E + + +N   I KG +  +++   HFG+++ E++
Sbjct: 466 WCEKDVVILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 511


>gi|41834183|gb|AAS13321.1| VscQ [Vibrio harveyi]
          Length = 321

 Score = 56.4 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +P+++   +G   + +  L  L  G    L++ +   V +  N + I + E+  + E  
Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 304

Query: 134 THFGVRVIEILN 145
              GVRV+E+  
Sbjct: 305 -RLGVRVLELFG 315


>gi|16799783|ref|NP_470051.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|16413160|emb|CAC95940.1| lin0708 [Listeria innocua Clip11262]
          Length = 513

 Score = 56.0 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           I++++    ++P+  +    L +     +   +IPV ++++ G+  +++   ++  + DV
Sbjct: 416 IKEHETKEPAQPVVMEEKETLSEMEQILE---DIPVTLEVVFGTAKVKLEKFISWCEKDV 472

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           I L + + E + + +N   I KG +  +++   HFG+++ E++
Sbjct: 473 IILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 512


>gi|315498407|ref|YP_004087211.1| surface presentation of antigens (spoa) protein [Asticcacaulis
           excentricus CB 48]
 gi|315416419|gb|ADU13060.1| surface presentation of antigens (SPOA) protein [Asticcacaulis
           excentricus CB 48]
          Length = 93

 Score = 56.0 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++ ++LG   + +  L+ + +G VI LD R  + V I  NN  +A+GEI I EE 
Sbjct: 20  EISVLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEK 74


>gi|10955563|ref|NP_052404.1| type III secretion system protein [Yersinia enterocolitica]
 gi|28373030|ref|NP_783678.1| type III secretion system protein [Yersinia enterocolitica]
 gi|32470291|ref|NP_863526.1| type III secretion system protein [Yersinia enterocolitica]
 gi|122815815|ref|YP_001004081.1| type III secretion system protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163585|ref|YP_004424927.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|14579349|gb|AAK69226.1|AF336309_21 YscQ [Yersinia enterocolitica]
 gi|4324350|gb|AAD16827.1| YscQ [Yersinia enterocolitica W22703]
 gi|23630602|gb|AAN37558.1| YscQ [Yersinia enterocolitica]
 gi|121663689|emb|CAL10051.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923234|emb|CBW54700.1| YscQ, T3SS component [Yersinia enterocolitica (type O:8)]
 gi|325667815|gb|ADZ44458.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 307

 Score = 56.0 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
           + +V  +      L       ++P+      +P    ++   K +   +S     +S+ +
Sbjct: 170 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 225

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
             K   + + +   PV++   +G   +    L +L  G +I L   V   V +  N + +
Sbjct: 226 NPKPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 282

Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143
             G +    E     GVR+    E+
Sbjct: 283 GHGRLV---EIQGRLGVRIERLTEV 304


>gi|89898774|ref|YP_515884.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
 gi|89332146|dbj|BAE81739.1| type III secretion flagellar motor switch domain [Chlamydophila
           felis Fe/C-56]
          Length = 371

 Score = 56.0 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
           K+   +    + +   + LS+G ++ L+         VD+ +N  K+ +GEI  + +   
Sbjct: 308 KLVAEVSRYSLTVEEFLKLSQGSILNLNGV--HPSRGVDLILNGAKVGRGEIVSLGDV-- 363

Query: 135 HFGVRVIEI 143
             G+RV+E+
Sbjct: 364 -LGIRVLEV 371


>gi|313620056|gb|EFR91570.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
          Length = 398

 Score = 56.0 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
              EP         E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + +
Sbjct: 305 ETKEPAQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESM 364

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            E + + +N   I KG +  +++   HFG+++ E++
Sbjct: 365 NEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 397


>gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
 gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
          Length = 502

 Score = 56.0 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 21  HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN-IPVKM 79
            I NP     ++      +     N  D              +++    + I+  IPVK+
Sbjct: 380 QIFNPAAAKEMAQLMLAIQAQEVANKADTQEMKPEMPLPIEEKETLSEMEAILEAIPVKL 439

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           +++ G+  +++   ++  + DVI L + + E + + +N   I KG +  + +   HFG++
Sbjct: 440 EVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVND---HFGIQ 496

Query: 140 VIEIL 144
           + E++
Sbjct: 497 MTELV 501


>gi|294496838|ref|YP_003560535.1| type III secretion protein [Yersinia pestis Z176003]
 gi|262364006|gb|ACY64343.1| type III secretion protein [Yersinia pestis D182038]
 gi|294352426|gb|ADE66483.1| type III secretion protein [Yersinia pestis Z176003]
          Length = 305

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
           + +V  +      L       ++P+      +P    ++   K +   +S     +S+ +
Sbjct: 168 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 223

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
             +   + + +   PV++   +G   +    L +L  G +I L   V   V +  N + +
Sbjct: 224 NPEPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 280

Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143
             G +    E     GVR+    E+
Sbjct: 281 GHGRLV---EIQGRLGVRIERLTEV 302


>gi|27376929|ref|NP_768458.1| RhcQ protein [Bradyrhizobium japonicum USDA 110]
 gi|12620525|gb|AAG60801.1|AF322012_106 RhcQ [Bradyrhizobium japonicum]
 gi|27350071|dbj|BAC47083.1| RhcQ protein [Bradyrhizobium japonicum USDA 110]
          Length = 373

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           I + +    G   M +  L  +++G V  L + +   VDI  N Q+I +G+I  + E+  
Sbjct: 303 IEITLVFECGRWPMPLGTLRTINEGHVFELGRHLDGPVDIVANGQRIGRGDIVRIGEE-- 360

Query: 135 HFGVRV 140
              VR+
Sbjct: 361 -LAVRL 365


>gi|16082731|ref|NP_395177.1| type III secretion system protein [Yersinia pestis CO92]
 gi|31795278|ref|NP_857739.1| type III secretion system protein [Yersinia pestis KIM]
 gi|31795480|ref|NP_857934.1| type III secretion system protein [Yersinia pestis KIM]
 gi|45478541|ref|NP_995368.1| type III secretion system protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51593912|ref|YP_068479.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108793661|ref|YP_636811.1| type III secretion system protein [Yersinia pestis Antiqua]
 gi|145597139|ref|YP_001154603.1| type III secretion system protein [Yersinia pestis Pestoides F]
 gi|149192696|ref|YP_001293928.1| type III secretion system protein [Yersinia pestis CA88-4125]
 gi|162417770|ref|YP_001604475.1| type III secretion system protein [Yersinia pestis Angola]
 gi|165927755|ref|ZP_02223587.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940056|ref|ZP_02228590.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011716|ref|ZP_02232614.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214457|ref|ZP_02240492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401907|ref|ZP_02307393.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422402|ref|ZP_02314155.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422438|ref|ZP_02314191.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422900|ref|ZP_02314653.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426869|ref|ZP_02318622.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186897577|ref|YP_001874688.1| type III secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229896859|ref|ZP_04512019.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|229900214|ref|ZP_04515350.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270491107|ref|ZP_06208179.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|322836569|ref|YP_004210065.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
 gi|1176912|sp|P42713|YSCQ_YERPE RecName: Full=Yop proteins translocation protein Q
 gi|55977795|sp|P40296|YSCQ_YERPS RecName: Full=Yop proteins translocation protein Q
 gi|2465658|gb|AAB72200.1| YscQ [Yersinia pestis]
 gi|2996238|gb|AAC62561.1| Yop proteins translocation protein Q [Yersinia pestis KIM 10]
 gi|3822068|gb|AAC69788.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832463|emb|CAB54920.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|45357163|gb|AAS58559.1| putative type III secretion protein YscQ [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51591609|emb|CAF25413.1| yscQ; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782208|gb|ABG16263.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145212907|gb|ABP42313.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|148872354|gb|ABR14844.1| putative type III secretion protein [Yersinia pestis CA88-4125]
 gi|162354790|gb|ABX88737.1| type III secretion apparatus protein YscQ [Yersinia pestis Angola]
 gi|165911966|gb|EDR30609.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920191|gb|EDR37492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989323|gb|EDR41624.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204350|gb|EDR48830.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958190|gb|EDR55211.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958639|gb|EDR55660.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958675|gb|EDR55696.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048635|gb|EDR60043.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054168|gb|EDR63995.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186700603|gb|ACC91231.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
           pseudotuberculosis PB1/+]
 gi|229686734|gb|EEO78814.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700130|gb|EEO88169.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|262363849|gb|ACY60569.1| type III secretion protein [Yersinia pestis D106004]
 gi|270334850|gb|EFA45629.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|317374481|gb|ADV16656.1| type III secretion inner membrane protein [Yersinia pestis]
 gi|321161343|gb|ADW67049.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
          Length = 307

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
           + +V  +      L       ++P+      +P    ++   K +   +S     +S+ +
Sbjct: 170 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 225

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
             +   + + +   PV++   +G   +    L +L  G +I L   V   V +  N + +
Sbjct: 226 NPEPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 282

Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143
             G +    E     GVR+    E+
Sbjct: 283 GHGRLV---EIQGRLGVRIERLTEV 304


>gi|475122|gb|AAA27677.1| yscQ [Yersinia pseudotuberculosis]
          Length = 307

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
           + +V  +      L       ++P+      +P    ++   K +   +S     +S+ +
Sbjct: 170 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 225

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
             +   + + +   PV++   +G   +    L +L  G +I L   V   V +  N + +
Sbjct: 226 NPEPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 282

Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143
             G +    E     GVR+    E+
Sbjct: 283 GHGRLV---EIQGRLGVRIERLTEV 304


>gi|188532667|ref|YP_001906464.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|188027709|emb|CAO95562.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 338

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           N ++NI    + D  +  +  ++         + ++P+ +++  G   M +  L  L  G
Sbjct: 229 NHLENIPLNSAGDDESTNDPQSEYLSGEESRRLASLPLSLEVRCGRTVMTLGELQQLQAG 288

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIME 130
            V+TLD        +   +  IA+GE+  +E
Sbjct: 289 SVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319


>gi|226326426|ref|ZP_03801944.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
 gi|225205209|gb|EEG87563.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
          Length = 313

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P  N    + +   +N+ +     S  ++  ++ N   I +IPV +  +L S  + I  +
Sbjct: 202 PDENDLDDLIQLQQENLDDHNDVTSPTLVHDNSVNLQSINSIPVTVSFLLASKTLLIEQI 261

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
             L+ GD I L +   + + I +N   +A GE+  + +   +F V +    +AQ
Sbjct: 262 EALAPGDKIELPENAYQHIIIKVNGISVASGELVKIGD---NFAVEIQRSFSAQ 312


>gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 329

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D I N  V +++++G+  + + +L++  KGDVI ++KR  + +++ IN++    G   + 
Sbjct: 250 DKISNTYVPLKVVIGTSKITVRDLLSFDKGDVIEINKRYKDPIEVKINDETKFLG---VP 306

Query: 130 EEDDTHFGVRVIEILNA 146
              +  + V++ EI + 
Sbjct: 307 GIRNKKYCVQITEICSE 323


>gi|318608198|emb|CBY78172.1| type III secretion inner membrane protein (YscQ,homologous to
           flagellar export components) [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 307

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +S +S+ +  K   + + +   PV++   +G   +    L +L  G +I L   V   V 
Sbjct: 218 MSHESDELNPKPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVR 274

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRV---IEI 143
           +  N + +  G +    E     GVR+    E+
Sbjct: 275 LLANGRLLGHGRLV---EIQGRLGVRIERLTEV 304


>gi|207108700|ref|ZP_03242862.1| flagellar motor switch protein FliY [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 57

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 96  LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +  G V+ LD+ V + ++I ++++ IAKGE+ I++    +FG+++ +I   +
Sbjct: 1   MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 49


>gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
 gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8]
 gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
 gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8]
          Length = 372

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           ISS +  +  +  D ++  +    V +   LG   + ++ L  L +GDVI LD+   + +
Sbjct: 242 ISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDVIPLDRETDDPI 301

Query: 113 DITINN 118
            + +N 
Sbjct: 302 KVFVNG 307


>gi|15615009|ref|NP_243312.1| flagellar motor switch protein FliM [Bacillus halodurans C-125]
 gi|10175066|dbj|BAB06165.1| flagellar motor switch protein [Bacillus halodurans C-125]
          Length = 330

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK--IAKGEITIMEEDD 133
           P+ +Q  LG   + I   ++L  GDVI LD+ + E +++ +      +A+       +  
Sbjct: 258 PLLIQTELGRSEITIHEFLHLGIGDVIELDQSIHEPLNVRVGGHLKYLAQ-----PGKKK 312

Query: 134 THFGVRVIEILNA 146
            H  V+V +++  
Sbjct: 313 NHLAVQVTDVIEE 325


>gi|296389922|ref|ZP_06879397.1| type III secretion system protein [Pseudomonas aeruginosa PAb1]
          Length = 309

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +++   +  +P+ +   +G   + +  L  L  G ++ LD  +   V I  N + +  GE
Sbjct: 229 SEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGE 288

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           +  +++     GVRV  +  
Sbjct: 289 LVRLQD---RLGVRVTRLFG 305


>gi|313610118|gb|EFR85441.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
          Length = 515

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   +++ + +  +   + E 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKETTTPAEIIEPEKPAESVHQAVIEEKETLSEM 441

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++  IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 442 EQ----ILEEIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497

Query: 125 EITIMEEDDTHFGVRVIEIL 144
            +  +++   HFG+++ E++
Sbjct: 498 ILVRVDD---HFGIQMTELV 514


>gi|313624702|gb|EFR94658.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
          Length = 398

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
              EP         E  ++   ++ +IPV ++++ G+  +++   ++  + DVI L + +
Sbjct: 305 ETKEPEQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESM 364

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
            E + + +N   I KG +  +++   HFG+++ E++
Sbjct: 365 NEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 397


>gi|254234793|ref|ZP_04928116.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|126166724|gb|EAZ52235.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
          Length = 309

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++   +  +P+ +   +G   + +  L  L  G ++ LD  +   V I  N + +  GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289

Query: 127 TIMEEDDTHFGVRVIEILN 145
             +++     GVRV  +  
Sbjct: 290 VRLQD---RLGVRVTRLFG 305


>gi|188997537|ref|YP_001931788.1| surface presentation of antigens (SPOA) protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932604|gb|ACD67234.1| surface presentation of antigens (SPOA) protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 87

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           +++      LI NI + + I L S       L+NL +GD+I L+K + + V+I   N+K+
Sbjct: 7   VDEIYKKISLIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFLNEKV 66

Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
             GE+  + E    +GVR+++++ 
Sbjct: 67  GFGELVNVNE---KYGVRLVDLIK 87


>gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
 gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
          Length = 323

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           ++  +PV++   +G   + + + + L  GDVITL+K VGE +++ ++     +       
Sbjct: 253 ILAEVPVELIAYIGRTRLPVRDFIQLQVGDVITLEKTVGEDLELYVDGHHKFQ---VQPG 309

Query: 131 EDDTHFGVRVIEIL 144
             +    V+V E++
Sbjct: 310 IVNKKIAVQVTEVV 323


>gi|107101126|ref|ZP_01365044.1| hypothetical protein PaerPA_01002158 [Pseudomonas aeruginosa PACS2]
 gi|254240039|ref|ZP_04933361.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|126193417|gb|EAZ57480.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
          Length = 309

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++   +  +P+ +   +G   + +  L  L  G ++ LD  +   V I  N + +  GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289

Query: 127 TIMEEDDTHFGVRVIEILN 145
             +++     GVRV  +  
Sbjct: 290 VRLQD---RLGVRVTRLFG 305


>gi|218892350|ref|YP_002441217.1| type III secretion system protein [Pseudomonas aeruginosa LESB58]
 gi|218772576|emb|CAW28359.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           LESB58]
          Length = 309

 Score = 54.9 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++   +  +P+ +   +G   + +  L  L  G ++ LD  +   V I  N + +  GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289

Query: 127 TIMEEDDTHFGVRVIEILN 145
             +++     GVRV  +  
Sbjct: 290 VRLQD---RLGVRVTRLFG 305


>gi|49083573|gb|AAT51064.1| PA1694 [synthetic construct]
          Length = 310

 Score = 54.9 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++   +  +P+ +   +G   + +  L  L  G ++ LD  +   V I  N + +  GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289

Query: 127 TIMEEDDTHFGVRVIEILN 145
             +++     GVRV  +  
Sbjct: 290 VRLQD---RLGVRVTRLFG 305


>gi|15596891|ref|NP_250385.1| type III secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|9947667|gb|AAG05083.1|AE004596_9 translocation protein in type III secretion [Pseudomonas aeruginosa
           PAO1]
          Length = 309

 Score = 54.9 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           ++   +  +P+ +   +G   + +  L  L  G ++ LD  +   V I  N + +  GE+
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289

Query: 127 TIMEEDDTHFGVRVIEILN 145
             +++     GVRV  +  
Sbjct: 290 VRLQD---RLGVRVTRLFG 305


>gi|32477467|ref|NP_870461.1| flagellar motor switch protein fliN [fragment] [Rhodopirellula
           baltica SH 1]
 gi|32448018|emb|CAD77538.1| probable flagellar motor switch protein fliN [Fragment]
           [Rhodopirellula baltica SH 1]
          Length = 144

 Score = 54.9 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           + +    D  +EP    S+   EK       ++ I   + + L      +  ++ L  G 
Sbjct: 46  MSENATEDKPTEPSPPTSSMYKEK-------VLKIRTTVNVTLAEKKEPLRKILALVPGS 98

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++T D      + +      IA GE   + +    FG+RV EI   +
Sbjct: 99  MLTFDVHCDRPLTLRAGGHPIATGETVKIGD---KFGLRVREIGVPK 142


>gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
           20603]
 gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
           20603]
          Length = 308

 Score = 54.5 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIM----NIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
            + E  +  S    E+   +F+ +     ++PV + +   S  ++  ++++++ GDVI L
Sbjct: 209 KVGEGEADPSAAQREEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRDIIDMAVGDVIEL 268

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
                + + I +  + I  G   +   +     V+V +
Sbjct: 269 RHAASKPLRIVVEGRTIGHG---VPGNNGKQLAVKVTD 303


>gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255]
 gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 97

 Score = 54.5 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M +  ++ LS+G +I LD    + V I  NN  +A G + +
Sbjct: 24  VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVMV 77


>gi|27550058|gb|AAO18041.1| LscQ [Photorhabdus luminescens]
          Length = 309

 Score = 54.5 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D PL       P    +    K ++  +  P S +S++ L  +  N     ++ 
Sbjct: 185 PPQQQPDAPLLAYLEGRPWAYFKSHDHKLELITMHTPSSDNSDDTLPVTDLN-----DLE 239

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V +   +G   + +  L +L  G ++ L       V I +N + +  G +    + +   
Sbjct: 240 VHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGVVRILVNQKCLGSGRLV---DIEGRL 296

Query: 137 GVRV 140
           GVR+
Sbjct: 297 GVRI 300


>gi|237755392|ref|ZP_04584019.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692433|gb|EEP61414.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 87

 Score = 54.5 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
               LI +I + + I L S       L+NL +GD+I L+K + + V+I  +N+K   GE+
Sbjct: 12  KKISLIKDINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFSNEKAGFGEL 71

Query: 127 TIMEEDDTHFGVRVIEILN 145
             +      +G R+++++ 
Sbjct: 72  VNVN---GKYGARLVDLIK 87


>gi|170698146|ref|ZP_02889225.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
 gi|170136911|gb|EDT05160.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
          Length = 309

 Score = 54.5 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           +  SE        +++      D +   PVK++       + ++++  L  G V+ LD  
Sbjct: 214 EQASEMRGDSQPGMMDGQAFQVDAL---PVKLEFAFRQRELTVADVARLHPGAVLPLDAG 270

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRV--IEILNAQ 147
               V I  N + +A GE+  + E      V +  IE+++ +
Sbjct: 271 AEHEVKIYANGRYLALGELIQVGE---RLAVEIQSIELVDPK 309


>gi|289578422|ref|YP_003477049.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
           Ab9]
 gi|297544698|ref|YP_003677000.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528135|gb|ADD02487.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
           Ab9]
 gi|296842473|gb|ADH60989.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 332

 Score = 54.5 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + +   LGS  + +   +N   GD+I LDK   + VDI I+     +G   I    +  +
Sbjct: 260 IPLTAQLGSTTITVKEFLNFEIGDIILLDKNFKDPVDIIIDKNVKFRG---IPGIRNNKY 316

Query: 137 GVRVIEIL 144
            V++ E++
Sbjct: 317 SVKITEVI 324


>gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 330

 Score = 54.5 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V ++I++GS  + +  L+ L+ GDVI L++R+ E +++ I  +   +G+  ++       
Sbjct: 259 VPVKILIGSTVITVRELLELAPGDVIPLERRLDEDLEVVIGQKPKFRGKPGVVG---NRL 315

Query: 137 GVRVIEILNA 146
            +++ EI++ 
Sbjct: 316 ALKITEIVSE 325


>gi|116049644|ref|YP_791551.1| type III secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584865|gb|ABJ10880.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 309

 Score = 54.5 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +++   +  +P+ +   +G   + +  L  L  G ++ LD  +   V I  N + +  GE
Sbjct: 229 SEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGE 288

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           +  +++     GVRV  +  
Sbjct: 289 LVRLQD---RLGVRVTRLFG 305


>gi|167923337|ref|ZP_02510428.1| type III secretion system protein BsaV [Burkholderia pseudomallei
           BCC215]
          Length = 335

 Score = 54.1 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S         D   +    +          + D +   
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDASHDASHDEPTAAHAPPAFDIDAL--- 260

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 261 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 316


>gi|218674848|ref|ZP_03524517.1| type III secretion system translocation protein [Rhizobium etli
           GR56]
 gi|327192840|gb|EGE59766.1| type III secretion system translocation protein [Rhizobium etli
           CNPAF512]
          Length = 339

 Score = 54.1 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+K+    G   + +  L  + +G V  LD+ + ++VDI    + I +GEI  ++    
Sbjct: 272 IPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLS- 330

Query: 135 HFGVRVI 141
              VRV 
Sbjct: 331 --AVRVT 335


>gi|56964023|ref|YP_175754.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
 gi|56910266|dbj|BAD64793.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
          Length = 329

 Score = 54.1 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           +++   LG   + I   + L KGDV+ L++ + E +D+ +  +K   G+  +        
Sbjct: 259 LEVAAELGRSTITIEEFLRLGKGDVVALNQLIDEPLDVLVGGEKKFSGQPGV---KRDRM 315

Query: 137 GVRVIEILN 145
            ++V ++L 
Sbjct: 316 ALQVTDVLG 324


>gi|313110380|ref|ZP_07796269.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
 gi|310882771|gb|EFQ41365.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
          Length = 309

 Score = 54.1 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125
           +++   +  +P+ +   +G   + +  L  L  G ++ LD  +   V I  N + +  GE
Sbjct: 229 SEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGE 288

Query: 126 ITIMEEDDTHFGVRVIEILN 145
           +  +++     GVRV  +  
Sbjct: 289 LVRLQD---RLGVRVTRLFG 305


>gi|310766419|gb|ADP11369.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcQ protein [Erwinia sp. Ejp617]
          Length = 338

 Score = 54.1 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
               +   D D ++E    +  +  E+       + ++P+ +++  G   + +  L  L 
Sbjct: 232 ESTALNSADDDALTEGSQPEFLSGEERPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 286

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            G V+TLD        +   +  IA+GE+  +E
Sbjct: 287 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319


>gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
           1873]
 gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
           1873]
          Length = 331

 Score = 54.1 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 56  SDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
            +  + LE+S +     MNI  + M  +LGS  + +   + LS GDV+TLD      V +
Sbjct: 237 ENDTDTLEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDVVTLDNLTSSPVKM 296

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + ++    G+  I+ ++    GV++++I++ 
Sbjct: 297 MVGDKPYLLGKPGIIGKNR---GVQILDIIDK 325


>gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
 gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
          Length = 80

 Score = 54.1 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
              + N+ V + ++LG+  M I  ++ LS+G +I LD    + V +  NN  +A G + +
Sbjct: 1   MATLDNVSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60


>gi|221209605|ref|ZP_03582586.1| bcscQ [Burkholderia multivorans CGD1]
 gi|221170293|gb|EEE02759.1| bcscQ [Burkholderia multivorans CGD1]
          Length = 441

 Score = 54.1 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
           EM ++    D+ S   ++  +     +  + D +    V ++  L    M +  LV L  
Sbjct: 337 EMPLEPPRTDSAS---AAAPDTPPADAPRSLDGLA---VDLRFELPPTSMPLGELVTLQP 390

Query: 99  GDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           G VI L   + +SV  +  N   I  G++  + +     GVRV+ +   
Sbjct: 391 GAVIELPHGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTPP 436


>gi|190894059|ref|YP_001984353.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
 gi|190699720|gb|ACE93803.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
          Length = 339

 Score = 54.1 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+K+    G   + +  L  + +G V  LD+ + ++VDI    + I +GEI  ++    
Sbjct: 272 IPIKLVFDAGRLELPLRALETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLS- 330

Query: 135 HFGVRVI 141
              VRV 
Sbjct: 331 --AVRVT 335


>gi|21492904|ref|NP_659979.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
 gi|21467329|gb|AAM54992.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
          Length = 339

 Score = 54.1 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+K+    G   + +  L  + +G V  LD+ + ++VDI    + I +GEI  ++    
Sbjct: 272 IPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLS- 330

Query: 135 HFGVRVI 141
              VRV 
Sbjct: 331 --AVRVT 335


>gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
 gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
          Length = 80

 Score = 54.1 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
              I N+ V + ++LG+  M I  ++ LS+G +I LD    + V +  NN  +A G + +
Sbjct: 1   MATIDNVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60


>gi|329942356|ref|ZP_08291166.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10]
 gi|332286998|ref|YP_004421899.1| secretion and cellular translocation protein Q [Chlamydophila
           psittaci 6BC]
 gi|313847595|emb|CBY16583.1| possible flagellar or type III secretion protein [Chlamydophila
           psittaci RD1]
 gi|325507164|gb|ADZ18802.1| secretion and cellular translocation protein Q [Chlamydophila
           psittaci 6BC]
 gi|328815266|gb|EGF85254.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10]
 gi|328914228|gb|AEB55061.1| type III secretion translocase SctQ [Chlamydophila psittaci 6BC]
          Length = 371

 Score = 54.1 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
           K+        + +   +NLS+G ++ L+         VD+ +N  K+ +GEI  + +   
Sbjct: 308 KLVAEASRYSLTVEEFLNLSQGSILNLNGI--HPSRGVDLVLNGAKVGRGEIVSLGDV-- 363

Query: 135 HFGVRVIEI 143
             G+RV+E+
Sbjct: 364 -LGIRVLEV 371


>gi|300310128|ref|YP_003774220.1| type III secretion system protein [Herbaspirillum seropedicae SmR1]
 gi|300072913|gb|ADJ62312.1| type III secretion system protein [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score = 53.7 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D+ + +P+ +Q+ LG   + +S L  L +  V+ L     +++ IT    ++ +GE+  +
Sbjct: 326 DVAVELPLTLQVELGRLSLSLSQLRALGEQVVLELHGASAQALRITSAGVELGRGEVVSV 385

Query: 130 EEDDTHFGVRVI 141
           +      GVR++
Sbjct: 386 D---GRLGVRIV 394


>gi|84785904|gb|ABC62091.1| secretion and cellular translocation protein Q [Chlamydophila
           psittaci]
          Length = 371

 Score = 53.7 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
           K+        + +   +NLS+G ++ L+         VD+ +N  K+ +GEI  + +   
Sbjct: 308 KLVAEASRYSLTVEEFLNLSQGSILNLNGI--HPSRGVDLVLNGAKVGRGEIVSLGDV-- 363

Query: 135 HFGVRVIEI 143
             G+RV+E+
Sbjct: 364 -LGIRVLEV 371


>gi|304316897|ref|YP_003852042.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778399|gb|ADL68958.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 329

 Score = 53.7 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 11/93 (11%)

Query: 60  NILEKSTDNFDLIMN------IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +  EK + +  +I +      IP+K   ++G   + + +L+N +KGD++ ++K+  + ++
Sbjct: 236 SNAEKQSCDIGIIKDKISNTYIPLK--AVIGMSKITVRDLLNFNKGDILEINKKYKDPIE 293

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I IN++    G   +    +  + V++ EI + 
Sbjct: 294 IKINDETKFLG---VPGIKNKKYCVQITEICSE 323


>gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88]
 gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88]
          Length = 332

 Score = 53.7 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 54  ISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
              ++  + E+S     D I  +  ++  +LG   + +   + LS GDV+ LD ++ + +
Sbjct: 236 FQENNEAVREESNKQLRDRINIVETELVAVLGGAKITVEEFLRLSLGDVLILDNQIDKPI 295

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            I + NQ  A G+  ++++   + G+++++IL+ 
Sbjct: 296 SINVENQLYAYGKPGVVDK---NMGIQILDILDK 326


>gi|288553053|ref|YP_003424988.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
 gi|288544213|gb|ADC48096.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
          Length = 330

 Score = 53.7 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+ +Q  LG   + I+  + L +GDVI LD+ + E + +T+  +K    +     +    
Sbjct: 258 PLLIQSELGRSEITINEFLQLGEGDVIELDQLINEPLLVTVEGEKKFYAQ---PGKMKNK 314

Query: 136 FGVRVIEILNA 146
             V+V +++  
Sbjct: 315 MAVQVTDVIEE 325


>gi|171319017|ref|ZP_02908144.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171095772|gb|EDT40725.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 329

 Score = 53.7 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
           + +  V++ + L  C + +  L NL  G ++ L K   E SVDI     ++A+G +    
Sbjct: 254 LEDRHVELSVELAICRLTLGELANLRAGQMLRLAKAADEMSVDIRYRGTRVARGSLV--- 310

Query: 131 EDDTHFGVRV 140
           E +   GVR+
Sbjct: 311 EINGLLGVRI 320


>gi|221635435|ref|YP_002523311.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
           5159]
 gi|221158064|gb|ACM07182.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
           5159]
          Length = 334

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
            + P  + S  ++       +    + +++++ LG   + +  L+ L  GDV+ LD+ V 
Sbjct: 221 FANPRRATSPQVIADLMAQLE---EVSLQLRVELGRARLTVRELLALEPGDVLVLDQDVS 277

Query: 110 ESVDITINN 118
             + + + N
Sbjct: 278 FPLAVYVEN 286


>gi|166154014|ref|YP_001654132.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
 gi|166154889|ref|YP_001653144.1| type III secretion system protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335214|ref|ZP_07223458.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
 gi|165930002|emb|CAP03485.1| Type III secretion component, basal body [Chlamydia trachomatis
           434/Bu]
 gi|165930877|emb|CAP06439.1| Type III secretion component, basal body [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 373

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
           K+   +    + +   + L  G V+  D         VDI +N  K+ +G I  +++   
Sbjct: 310 KIVAEVARYSLSVGEFLKLGPGSVLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV-- 365

Query: 135 HFGVRVIEI 143
             G+RV+E+
Sbjct: 366 -LGIRVLEV 373


>gi|312135842|ref|YP_004003180.1| flagellar motor switch protein flim [Caldicellulosiruptor
           owensensis OL]
 gi|311775893|gb|ADQ05380.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           owensensis OL]
          Length = 329

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
               ++  S ++   L+K  +         V ++ +LG   + +   + L  GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           R  + +++ + N+    G   +    +    +++  +   +
Sbjct: 289 RKNQEIEVYVGNKLKFYG---VPGRKEGRVAIKITRVEEGE 326


>gi|259909717|ref|YP_002650073.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96]
 gi|224965339|emb|CAX56871.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96]
 gi|283479803|emb|CAY75719.1| Type III secretion protein HrcQa [Erwinia pyrifoliae DSM 12163]
          Length = 341

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
               +   D D ++E    +  +  E+       + ++P+ +++  G   + +  L  L 
Sbjct: 235 ESTALNSADDDALNEGSQPEFLSGEERPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 289

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            G V+TLD        +   +  IA+GE+  +E
Sbjct: 290 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 322


>gi|83646013|ref|YP_434448.1| flagellar motor switch/type III secretory pathway protein [Hahella
           chejuensis KCTC 2396]
 gi|83634056|gb|ABC30023.1| Flagellar motor switch/type III secretory pathway protein [Hahella
           chejuensis KCTC 2396]
          Length = 397

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
              ++     +      + ++PV++   +      ++ + +L+ G  I LDK +  +V +
Sbjct: 283 QPMTHTTTPNNDAPLQPLHDLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTL 342

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVI 141
            + +Q IA+ E+  + +     G R+ 
Sbjct: 343 LVQSQAIAEAELVQVGD---QIGARIT 366


>gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 80

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M +  ++ LS+G +I LD    + V I +NN  IA G + +
Sbjct: 7   VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMV 60


>gi|85058546|ref|YP_454248.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
 gi|84779066|dbj|BAE73843.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
          Length = 304

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           VDN+  P + ++         ++     +PV ++ +L +    ++ L NL  G V  L +
Sbjct: 204 VDNVIAPSNEETQPQHTLPLFDWS---RVPVTVEFVLEANSYPLAELDNLQPGTVFDLSE 260

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            V +++ I +N Q +  GE+  +E++     V + 
Sbjct: 261 NVEKNIKIFLNQQLVGHGELVTLEDE--RLAVEIT 293


>gi|15605405|ref|NP_220191.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
 gi|255311498|ref|ZP_05354068.1| type III secretion system protein [Chlamydia trachomatis 6276]
 gi|255317800|ref|ZP_05359046.1| type III secretion system protein [Chlamydia trachomatis 6276s]
 gi|3329123|gb|AAC68267.1| Flagellar Motor Switch Domain/YscQ family [Chlamydia trachomatis
           D/UW-3/CX]
 gi|296436213|gb|ADH18387.1| type III secretion system protein [Chlamydia trachomatis G/9768]
 gi|296438073|gb|ADH20234.1| type III secretion system protein [Chlamydia trachomatis G/11074]
 gi|297140574|gb|ADH97332.1| type III secretion system protein [Chlamydia trachomatis G/9301]
 gi|297748803|gb|ADI51349.1| type III secreted protein SctQ [Chlamydia trachomatis D-EC]
 gi|297749683|gb|ADI52361.1| type III secreted protein SctQ [Chlamydia trachomatis D-LC]
          Length = 373

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           L +    D   EP        L  +T            +   +    + +   + L  G 
Sbjct: 284 LQEMQPEDAPEEPSEGGPATPLPSATK-----------IVAEVARYSLSVGEFLKLGPGS 332

Query: 101 VITLDKRVGES---VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           V+  D         VDI +N  K+ +G I  +++     G+RV+E+
Sbjct: 333 VLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV---LGIRVLEV 373


>gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
 gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
          Length = 332

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + ++P++ D +  L+KS      +  + + ++++LG   M +S  ++L +GDVI LDK++
Sbjct: 240 DSNQPVNQDDSRELQKS------LNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKI 293

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            E ++  I+ +   + +     + +    + +++ L  +
Sbjct: 294 TEPLETFIDGKPYFRAK---PGKQEDRLAIELLDKLEEE 329


>gi|296437141|gb|ADH19311.1| type III secretion system protein [Chlamydia trachomatis G/11222]
          Length = 373

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           L +    D   EP        L  +T            +   +    + +   + L  G 
Sbjct: 284 LQEMQPEDAPEEPSEGGPATPLPSATK-----------IVAEVARYSLSVGEFLKLGPGS 332

Query: 101 VITLDKRVGES---VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           V+  D         VDI +N  K+ +G I  +++     G+RV+E+
Sbjct: 333 VLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV---LGIRVLEV 373


>gi|76789412|ref|YP_328498.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
 gi|237803102|ref|YP_002888296.1| type III secretion system protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805023|ref|YP_002889177.1| type III secretion system protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255349061|ref|ZP_05381068.1| type III secretion system protein [Chlamydia trachomatis 70]
 gi|255503599|ref|ZP_05381989.1| type III secretion system protein [Chlamydia trachomatis 70s]
 gi|255507279|ref|ZP_05382918.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
 gi|76167942|gb|AAX50950.1| SctQ [Chlamydia trachomatis A/HAR-13]
 gi|231273323|emb|CAX10238.1| Type III secretion component, basal body [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274336|emb|CAX11131.1| Type III secretion component, basal body [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525716|emb|CBJ15197.1| Type III secretion component, basal body [Chlamydia trachomatis
           Sweden2]
 gi|296435286|gb|ADH17464.1| type III secretion system protein [Chlamydia trachomatis E/150]
 gi|296439004|gb|ADH21157.1| type III secretion system protein [Chlamydia trachomatis E/11023]
          Length = 373

 Score = 53.3 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           L +    D   EP        L  +T            +   +    + +   + L  G 
Sbjct: 284 LQEMQPEDAPEEPSEGGPATPLPSATK-----------IVAEVARYSLSVGEFLKLGPGS 332

Query: 101 VITLDKRVGES---VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           V+  D         VDI +N  K+ +G I  +++     G+RV+E+
Sbjct: 333 VLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV---LGIRVLEV 373


>gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC30]
 gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC10]
 gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC20]
 gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC30]
 gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC10]
 gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC20]
          Length = 332

 Score = 52.9 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + ++P++ D +  L+KS      +  + + ++++LG   M +S  ++L +GDVI LDK++
Sbjct: 240 DSNQPVNQDDSRELQKS------LNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKI 293

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            E ++  I+ +   + +     + +    + +++ L  +
Sbjct: 294 TEPLETFIDGKPYFRAK---PGKQEDRLAIELLDKLEEE 329


>gi|62184686|ref|YP_219471.1| type III secretion system protein [Chlamydophila abortus S26/3]
 gi|62147753|emb|CAH63497.1| possible flagellar or type III secretion protein [Chlamydophila
           abortus S26/3]
          Length = 371

 Score = 52.9 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
           K+        + +   ++LS+G ++ L+         VD+ +N  K+ +GEI  + +   
Sbjct: 308 KLVAEASRYSLTVEEFLHLSQGSILNLNGI--HPSRGVDLILNGAKVGRGEIVSLGDV-- 363

Query: 135 HFGVRVIEI 143
             G+RV+E+
Sbjct: 364 -LGIRVLEV 371


>gi|167590549|ref|ZP_02382937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ubonensis Bu]
          Length = 211

 Score = 52.9 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +      P +   +    ++    D +    V ++  L S  M +  L  L  G VI L 
Sbjct: 111 EPTRTDTPPTLSPDAPPHEAPRTLDALA---VDLRFELPSTSMPLGELAVLQPGAVIELQ 167

Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + + +SV  +  N   I  G +  + +     GVRV+ +   
Sbjct: 168 QGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 206


>gi|312792659|ref|YP_004025582.1| flagellar motor switch protein flim [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179799|gb|ADQ39969.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 329

 Score = 52.9 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
               ++  S ++   L+K  +         V ++ +LG   + +   + L  GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           R  + +++ + N+    G   +    +    V++  +   +
Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326


>gi|312876509|ref|ZP_07736492.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796720|gb|EFR13066.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 329

 Score = 52.9 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
               ++  S ++   L+K  +         V ++ +LG   + +   + L  GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           R  + +++ + N+    G   +    +    V++  +   +
Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326


>gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
           ATCC 12755]
          Length = 336

 Score = 52.9 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + ++P++ D +  L+KS      +  + + ++++LG   M +S  ++L +GDVI LDK++
Sbjct: 244 DSNQPVNQDDSRELQKS------LNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKI 297

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            E ++  I+ +   + +     + +    + +++ L  +
Sbjct: 298 TEPLETFIDGKPYFRAK---PGKQEDRLAIELLDKLEEE 333


>gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
 gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
          Length = 518

 Score = 52.9 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
                +E  +++      +EPI  +       +T+   +I +IP+ +++I G+  +++++
Sbjct: 409 QEEVQAETPVEEVVETPPAEPIQVEKATPQISTTETEAVIDSIPITLEVIFGTAKVKLAD 468

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +   + D++ L +   + + +  N   I  G +  + +   HFG+++ E+
Sbjct: 469 FITWCEKDIVILKESYEQPLSLLANGIHIGSGTLVRVND---HFGIKITEL 516


>gi|255523752|ref|ZP_05390718.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
 gi|296186755|ref|ZP_06855157.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
 gi|255512621|gb|EET88895.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
 gi|296048792|gb|EFG88224.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
          Length = 332

 Score = 52.9 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 54  ISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
             ++   ILE+S       +NI  + +  +LG+  + + + + L  GDV+TL+ +    +
Sbjct: 236 QDTNDEAILEESRVKLRQRLNIVNMNLTAVLGTTNITVDDFLRLGVGDVLTLNDKANTPI 295

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + + ++    G+  ++ +   + GV++++I++ 
Sbjct: 296 KLMVEDKPYCYGKPGVLGK---NMGVQILDIIDK 326


>gi|108763665|ref|YP_633788.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
 gi|108467545|gb|ABF92730.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
          Length = 416

 Score = 52.9 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +PV ++I L    + +S L  L  G ++ L     E V + + ++ +A+ E+  +E +  
Sbjct: 349 LPVDVEIELTRVMIPLSELAALKPGALLPLHINASEPVVLRVGDRAVARAELVEIEGEVG 408


>gi|302872559|ref|YP_003841195.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575418|gb|ADL43209.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 329

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
               ++  S ++   L+K  +         V ++ +LG   + +   + L  GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           R  + +++ + N+    G   +    +    V++  +   +
Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326


>gi|238759390|ref|ZP_04620555.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
 gi|238702417|gb|EEP94969.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
          Length = 311

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 36  NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP---VKMQIILGSCCMQISN 92
                 + + ++DNI E +      + E   +N     ++    VK+  +LG   + +  
Sbjct: 195 QQEGAFVIEENIDNI-EEVEETVPTLDEVLPENLPSHFDVTKLTVKLTFVLGHSEIPLEE 253

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           L ++  G V +L       V +  N Q +A+GE+  + +D+   G+ V 
Sbjct: 254 LAHIQPGAVYSLGADKDREVKVYANKQLVAEGELVYIGDDEE-LGLEVT 301


>gi|289805113|ref|ZP_06535742.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 275

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S  +    T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 176 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 234

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 235 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 266


>gi|161614165|ref|YP_001588130.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363529|gb|ABX67297.1| hypothetical protein SPAB_01907 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 322

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S  +    T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|16760493|ref|NP_456110.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141747|ref|NP_805089.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162229|ref|ZP_03347939.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213416629|ref|ZP_03349773.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213647286|ref|ZP_03377339.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854185|ref|ZP_03382717.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827207|ref|ZP_06545930.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25511809|pir||AB0697 probable type III secretion protein ssaQ [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502789|emb|CAD01947.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137375|gb|AAO68938.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 322

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S  +    T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|329850252|ref|ZP_08265097.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
           C19]
 gi|328840567|gb|EGF90138.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
           C19]
          Length = 71

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           LG   + +  L+ + +G VI LD R  + V I  NN  +A+GEI I EE 
Sbjct: 3   LGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEK 52


>gi|213581368|ref|ZP_03363194.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 244

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S  +    T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 145 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 203

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 204 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 235


>gi|85859177|ref|YP_461379.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
 gi|85722268|gb|ABC77211.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
          Length = 333

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + + I LGS  +   ++VNL  GDVITLD+   + V+I +      KG          + 
Sbjct: 258 LDILIELGSTLISAKDVVNLKPGDVITLDQYCTDPVNIFVEGMMKFKG---YPGTYKGNQ 314

Query: 137 GVRVIEILNAQ 147
            VR+ EI+  +
Sbjct: 315 AVRISEIVQDK 325


>gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18]
 gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
          Length = 80

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M I  ++ LS+G +I LD    + V I  NN  IA G + +
Sbjct: 7   VSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV 60


>gi|169831882|ref|YP_001717864.1| MCP methylation inhibitor CheC [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638726|gb|ACA60232.1| CheC, inhibitor of MCP methylation [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 369

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
                 E + +  DLI+++P+K+ +ILG     I +++ L+ G +I
Sbjct: 289 AGAGFSELALEKLDLILDLPLKVTVILGRSKRPIKDVLGLTPGSII 334


>gi|312126831|ref|YP_003991705.1| flagellar motor switch protein flim [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776850|gb|ADQ06336.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 329

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
               ++  S ++   L+K  +         V ++ +LG   + +   + L  GDV+ LD+
Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           R  + +++ + N+    G   +    +    V++  +   +
Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326


>gi|222530127|ref|YP_002574009.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456974|gb|ACM61236.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 329

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V ++ +LG   + +   + L  GDV+ LD+R  + +++ + N+    G   +    +   
Sbjct: 259 VTVKAVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYG---VPGRKEGRI 315

Query: 137 GVRVIEILNAQ 147
            V++  +   +
Sbjct: 316 AVKITRVEEGE 326


>gi|312597800|gb|ADQ89915.1| RscQ [Pseudomonas fluorescens]
          Length = 367

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 11/141 (7%)

Query: 8   ISYIKDNLEGRSMHIDNPLQDTNVSS---PTNNSEMLIQKNDVD--NISEPISSDSNNIL 62
           +  +++ +   +   D    D + S+   P   +    +  +          +  +  + 
Sbjct: 229 LLALEETVMSTTADTDILTPDWDDSTGYEPDAQAAEAAEHPESAYAAADTEEAPMTEPVA 288

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
            +  + FD   ++P+ + I  G   + +  L NL+ G V+ +      +  +    + +A
Sbjct: 289 AEVPERFD---DLPLALTIRCGHLQLTLGELRNLAPGAVLQVQGVAPGTAALFYGERALA 345

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE+    E D   G+++  +
Sbjct: 346 HGELV---EVDGRLGLQIAHV 363


>gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
 gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
          Length = 99

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +SS + +  +        +  + V + ++LG+C M I  ++ LS+G +I LD    + V 
Sbjct: 3   MSSVTESSRDFGGPAVSTLDKVTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVK 62

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           +  NN  IA G + +   D     V V E+L
Sbjct: 63  VLANNLPIANGVVLV---DRNRIAVEVKEML 90


>gi|16799781|ref|NP_470049.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|16413158|emb|CAC95938.1| lin0706 [Listeria innocua Clip11262]
          Length = 78

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+++   LG     + +L+++ KG V  L+   G  V ITI+ + I  GEI      D 
Sbjct: 7   IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTGNVVKITISGKCIGYGEILT---KDG 63

Query: 135 HFGVRVIEI 143
              V++ ++
Sbjct: 64  KMFVKITKL 72


>gi|312621580|ref|YP_004023193.1| flagellar motor switch protein flim [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202047|gb|ADQ45374.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 329

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V ++ +LG   + +   + L  GDV+ LD+R  + +++ + N+    G   +    +   
Sbjct: 259 VTVKAVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYG---VPGRKEGRI 315

Query: 137 GVRVIEILNAQ 147
            V++  +   +
Sbjct: 316 AVKITRVEEGE 326


>gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009]
 gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1]
 gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris DX-1]
 gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris
           CGA009]
 gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris TIE-1]
 gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris DX-1]
          Length = 80

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M I  ++ LS+G +I LD    + V I  NN  IA G + +
Sbjct: 7   VSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV 60


>gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5]
 gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB5]
          Length = 80

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M I  ++ LS+G +I LD    + V I  NN  IA G + +
Sbjct: 7   VSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLV 60


>gi|76152315|gb|ABA39816.1| HrcQ [Erwinia pyrifoliae]
          Length = 338

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 41/89 (46%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
           ++   +++  +   ++ +     S ++   + ++P+ +++  G   + +  L  L  G V
Sbjct: 231 LESTALNSADDDALNEGSQPEFLSGEDNPQLASLPLSLEVRCGRTALTLGELQRLQAGSV 290

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIME 130
           +TLD        +   +  IA+GE+  +E
Sbjct: 291 VTLDNVTPGEAGLYHGDTLIARGELVDVE 319


>gi|330812431|ref|YP_004356893.1| type III secretion protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380539|gb|AEA71889.1| putative type III secretion protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 367

 Score = 52.2 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 11/141 (7%)

Query: 8   ISYIKDNLEGRSMHIDNPLQDTNVSS---PTNNSEMLIQKNDVD--NISEPISSDSNNIL 62
           +  +++ +   +   D    D + S+   P   +    +  +          +  +  + 
Sbjct: 229 LLALEETVMSTTADTDILTPDWDDSTGYEPDAQAAEAAEHPESAYAAADTEEAPMTEPVA 288

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
            +  + FD   ++P+ + I  G   + +  L NL+ G V+ +      +  +    + +A
Sbjct: 289 AEVPERFD---DLPLALTIRCGHLQLTLGELRNLAPGAVLQVQGVAPGTAALFYGERALA 345

Query: 123 KGEITIMEEDDTHFGVRVIEI 143
            GE+    E D   G+++  +
Sbjct: 346 HGELV---EVDGRLGLQIAHV 363


>gi|86749492|ref|YP_485988.1| hypothetical protein RPB_2372 [Rhodopseudomonas palustris HaA2]
 gi|86572520|gb|ABD07077.1| Surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris HaA2]
          Length = 80

 Score = 52.2 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           N+ V + ++LG+  M I  ++ LS+G +I LD    + V I  NN  +A G + +
Sbjct: 6   NVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPVASGVVLV 60


>gi|312171086|emb|CBX79345.1| Type III secretion protein HrcQa [Erwinia amylovora ATCC BAA-2158]
          Length = 338

 Score = 52.2 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
               +   D D ++E    +     +        + ++P+ +++  G   + +  L  L 
Sbjct: 232 ESTALNSADDDALTEGSLPEYTGCEDNPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 286

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            G V+TLD        +   +  IA+GE+  +E
Sbjct: 287 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319


>gi|292487017|ref|YP_003529887.1| type III secretion protein HrcQa [Erwinia amylovora CFBP1430]
 gi|292900598|ref|YP_003539967.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|89474869|gb|AAB06004.2| HrcQ [Erwinia amylovora]
 gi|291200446|emb|CBJ47575.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552434|emb|CBA19479.1| Type III secretion protein HrcQa [Erwinia amylovora CFBP1430]
          Length = 338

 Score = 52.2 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 38  SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97
               +   D D ++E    +     +        + ++P+ +++  G   + +  L  L 
Sbjct: 232 ESTALNSADDDALTEGSLPEYTGCEDNPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 286

Query: 98  KGDVITLDKRVGESVDITINNQKIAKGEITIME 130
            G V+TLD        +   +  IA+GE+  +E
Sbjct: 287 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319


>gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14]
 gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter
           hamburgensis X14]
          Length = 87

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M +  ++ LS+G +I LD    + V I  NN  +A G + +
Sbjct: 14  VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVVV 67


>gi|115358963|ref|YP_776101.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
 gi|115284251|gb|ABI89767.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
          Length = 381

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +      P ++  +   + +  + D +    V ++  L    + +  L  L  G VI L 
Sbjct: 281 EPTRTDTPSATTHDASADDAPRSLDSLA---VDLRFELPPTSIPLGELGTLQPGAVIELQ 337

Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + + +SV  +  N   I  G++  + +     GVRV+ +   
Sbjct: 338 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 376


>gi|254502219|ref|ZP_05114370.1| putative surface presentation of antigens protein [Labrenzia
           alexandrii DFL-11]
 gi|222438290|gb|EEE44969.1| putative surface presentation of antigens protein [Labrenzia
           alexandrii DFL-11]
          Length = 88

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           I V + ++LG   M +  L+ + +G VI LD    + V I  NN  +AKG++ ++ E   
Sbjct: 7   INVDISVVLGENHMPVHQLLRMGRGAVIDLDVDEDDDVKIYANNTLVAKGQVVLLGE--- 63

Query: 135 HFGVRVIEIL 144
             G+ + E+L
Sbjct: 64  RIGISITEVL 73


>gi|168233613|ref|ZP_02658671.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468585|ref|ZP_03074569.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197247910|ref|YP_002146624.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|194454949|gb|EDX43788.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197211613|gb|ACH49010.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205332385|gb|EDZ19149.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 322

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|16764768|ref|NP_460383.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167995052|ref|ZP_02576142.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|3024662|sp|P74860|SSAQ_SALTY RecName: Full=Secretion system apparatus protein SsaQ
 gi|16419939|gb|AAL20342.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205327192|gb|EDZ13956.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261246624|emb|CBG24434.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993307|gb|ACY88192.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157953|emb|CBW17448.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912403|dbj|BAJ36377.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|323129690|gb|ADX17120.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988305|gb|AEF07288.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 322

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|161520304|ref|YP_001583731.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           multivorans ATCC 17616]
 gi|160344354|gb|ABX17439.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           multivorans ATCC 17616]
          Length = 443

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 24/125 (19%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           + PL+ T   +P          +D      P + D                   V ++  
Sbjct: 337 EMPLEPTRTDTPPATGAA----HDASPADAPRALDGLA----------------VDLRFE 376

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVI 141
           L    M +  L  L  G VI L + + +SV  +  N   I  G +  + +     GVRV+
Sbjct: 377 LPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVV 433

Query: 142 EILNA 146
            +   
Sbjct: 434 TLTQP 438


>gi|205352866|ref|YP_002226667.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857076|ref|YP_002243727.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|205272647|emb|CAR37557.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206708879|emb|CAR33209.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|309243394|gb|ADO51970.1| SsaQ [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|326627938|gb|EGE34281.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|168463172|ref|ZP_02697103.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195634559|gb|EDX52911.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|168263750|ref|ZP_02685723.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168822288|ref|ZP_02834288.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205341310|gb|EDZ28074.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347591|gb|EDZ34222.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320086103|emb|CBY95877.1| Secretion system apparatus protein ssaQ [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|194445909|ref|YP_002040670.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404572|gb|ACF64794.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|198245358|ref|YP_002215714.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939874|gb|ACH77207.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326623461|gb|EGE29806.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|167551613|ref|ZP_02345367.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168240931|ref|ZP_02665863.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194448655|ref|YP_002045421.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197264125|ref|ZP_03164199.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|200389410|ref|ZP_03216021.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|224584071|ref|YP_002637869.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|194406959|gb|ACF67178.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197242380|gb|EDY25000.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|199601855|gb|EDZ00401.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205323619|gb|EDZ11458.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205339429|gb|EDZ26193.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|224468598|gb|ACN46428.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|62180009|ref|YP_216426.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127642|gb|AAX65345.1| Secretion system apparatus SsaQ [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714476|gb|EFZ06047.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|56413611|ref|YP_150686.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362535|ref|YP_002142172.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127868|gb|AAV77374.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094012|emb|CAR59508.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 335

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +  + V + + LG   + + +++ L +GDVI LD +  + + + + N+     E      
Sbjct: 254 LSKVAVPVALELGHTVLSLGDVLQLREGDVIRLDAKTSDPLGLRVGNRVKFLCEA---GS 310

Query: 132 DDTHFGVRVIEILNAQ 147
            + H+  RV+E+L+++
Sbjct: 311 FNKHYAARVLEVLSSE 326


>gi|124381914|ref|YP_001025863.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10229]
 gi|126447935|ref|YP_001077948.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10247]
 gi|254359076|ref|ZP_04975348.1| type III secretion system protein BsaV [Burkholderia mallei
           2002721280]
 gi|126240789|gb|ABO03901.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10247]
 gi|148028263|gb|EDK86223.1| type III secretion system protein BsaV [Burkholderia mallei
           2002721280]
 gi|261826559|gb|ABN00415.2| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10229]
          Length = 335

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S         D   +    +          + D +   
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDTSHDTSHDTSHDEPTAAHAPPAFDIDAL--- 260

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + +  L     G V+ L    GE V I  N +   +GE+  + E 
Sbjct: 261 PVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 316


>gi|207109698|ref|ZP_03243860.1| flagellar motor switch protein FliY [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 164

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 34/62 (54%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + +E I +   ++      N  +++++ + +++ +G   M + ++V++  G V+ LD+ V
Sbjct: 103 STAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 162

Query: 109 GE 110
            +
Sbjct: 163 ND 164


>gi|204927926|ref|ZP_03219127.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204323268|gb|EDZ08464.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53]
 gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisA53]
          Length = 82

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M +  ++ LS+G +I LD    + V I  NN  +A G + +
Sbjct: 9   VSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASGMVLV 62


>gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
           2876]
 gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
           2876]
          Length = 329

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEIT 127
            LI    + ++ +LG+  + +++ +NL+ GD+I LD++V E +D+ + N  +  A     
Sbjct: 253 SLISKAQIPVKAVLGNSTISVNDFLNLNVGDIIRLDRKVDEELDVYVGNIHKFTA----- 307

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +    D ++ VR+  +L  +
Sbjct: 308 LPGSADDNYAVRITNVLRGE 327


>gi|168239302|ref|ZP_02664360.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737381|ref|YP_002114431.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712883|gb|ACF92104.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197288023|gb|EDY27410.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 322

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|325519944|gb|EGC99199.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. TJI49]
          Length = 134

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
             + D  +   P  S +      ++   D +    V ++  L    M +  L  L  G V
Sbjct: 30  PTRTDTSHTGAPDVSGAAASTGDTSRPLDGLA---VDLRFELPPTSMPLGELSALQPGAV 86

Query: 102 ITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I L + + +SV  +  N   I  G++  + +     GVRV+ +   
Sbjct: 87  IELQQGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLAQP 129


>gi|301027455|ref|ZP_07190792.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 69-1]
 gi|300394963|gb|EFJ78501.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 69-1]
          Length = 315

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S+S    E      +   ++PVK++ +LG   M +  + +L    +I+L     ++++I 
Sbjct: 223 SESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|33596842|ref|NP_884485.1| putative type III secretion protein [Bordetella parapertussis
           12822]
 gi|33573543|emb|CAE37534.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 359

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             ++   + +     ++EP + D      ++    D    IPV++   LG     ++ L 
Sbjct: 249 AEHASFRVTQGWTPIMTEPATPDPGETPAQAEATLDT-DQIPVRLTFDLGEREFTLAQLR 307

Query: 95  NLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +L  G    L++ + +  V +  N   +  G +    + D   GV +  +
Sbjct: 308 SLHPGCTFDLERPIADGPVMVRANGLLLGSGRLV---DIDGRIGVVLQSV 354


>gi|1526984|emb|CAA68198.1| secretion system apparatus, SsaQ [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 216

 Score = 51.8 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 117 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 175

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 176 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 207


>gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 322

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 15/144 (10%)

Query: 10  YIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
           +I+  +  + + I  P+    +T  +      E  I      +  EPI     +      
Sbjct: 179 FIRTEMNPQFVTIVTPVDVVIETEFTLEIETRECKIMVCIPYSSVEPIKEKLYSAFLADR 238

Query: 67  DNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           D  D+         I N PV+++ ILG   +    L++L  GD++TL +R+ E VD+ + 
Sbjct: 239 DEMDMKWIGRLKAQIKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVE 298

Query: 118 NQKIAKGEITIMEEDDTHFGVRVI 141
                KG++        ++ +++I
Sbjct: 299 GVPKFKGKL---GTFKGNYAIKII 319


>gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 332

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           + ++NI    S+      E        I  + V +++ LG   + +  L+ L KGDVI L
Sbjct: 226 DKLNNILLFSSAGKAQNPEDQRTIRRKIERVRVPLKVFLGQTQITVRELLGLEKGDVIPL 285

Query: 105 DKRVGESVDITINN-QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + + E +DI +   +K A     I         V++  +LN +
Sbjct: 286 QQHIQEPLDIYVGKFKKFAG----IPGLHSNRLAVQISGVLNEE 325


>gi|33600616|ref|NP_888176.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33568215|emb|CAE32128.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
          Length = 359

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             ++   + +     ++EP + D      ++    D    IPV++   LG     ++ L 
Sbjct: 249 AEHASFRVTQGWTPIMTEPATPDPGETPAQAEATLDT-DQIPVRLTFDLGEREFTLAQLR 307

Query: 95  NLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +L  G    L++ + +  V +  N   +  G +    + D   GV +  +
Sbjct: 308 SLHPGCTFDLERPIADGPVMVRANGLLLGSGRLV---DIDGRIGVVLQSV 354


>gi|327542145|gb|EGF28638.1| flagellar motor switch protein fliN [Rhodopirellula baltica WH47]
          Length = 99

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           + +    D  +EP    S+   EK       ++ I   + + L      +  ++ L  G 
Sbjct: 1   MSENATEDKPTEPSPPTSSMYKEK-------VLKIRTTVNVTLAEKKEPLRKILALVPGS 53

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++T D      + +      IA GE   + +    FG+RV EI   +
Sbjct: 54  MLTFDVHCDRPLTLRAGGHPIATGETVKIGD---KFGLRVREIGVPK 97


>gi|330444061|ref|YP_004377047.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum
           E58]
 gi|328807171|gb|AEB41344.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum
           E58]
          Length = 371

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P +    +    +V     P+  D          +  L+          +    + +   
Sbjct: 273 PKSGDFKITSYPNVQPEDAPLPEDHEAPAAPLPGHCKLV--------AEVARYGLAVDEF 324

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           + L+ G ++ L       VDI ++  K+ +GEI  + +     G+RV+E+
Sbjct: 325 LKLAPGSILNLGVHPSRGVDIILDGAKVGRGEILALGDV---LGIRVLEV 371


>gi|258511384|ref|YP_003184818.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478110|gb|ACV58429.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 331

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           ++++PV +++ +G   + +  +++L +GD I L + + +   + ++ +    G +    +
Sbjct: 254 LLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSV---GK 310

Query: 132 DDTHFGVRVI 141
            +  + V+++
Sbjct: 311 RNRVYAVKIV 320


>gi|218288306|ref|ZP_03492605.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241665|gb|EED08838.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 331

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           ++++PV +++ +G   + +  +++L +GD I L + + +   + ++ +    G +    +
Sbjct: 254 LLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSV---GK 310

Query: 132 DDTHFGVRVI 141
            +  + V+++
Sbjct: 311 RNRVYAVKIV 320


>gi|238913179|ref|ZP_04657016.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 322

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|284922804|emb|CBG35892.1| type III secretion system protein [Escherichia coli 042]
          Length = 315

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S+S    E      +   ++PVK++ +LG   M +  + +L    +I+L     ++++I 
Sbjct: 223 SESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|134294004|ref|YP_001117740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           vietnamiensis G4]
 gi|134137161|gb|ABO58275.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           vietnamiensis G4]
          Length = 392

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +      P ++  +   + +  + D +    V ++  L    + +  L  L  G VI L 
Sbjct: 292 EPTRTDTPPATAHDAPPDDAPRSLDGLA---VDLRFELPPTSIPLGELGALQPGAVIELQ 348

Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + + +SV  +  N   I  G +  + +     GVRV+ +   
Sbjct: 349 QGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 387


>gi|37527632|ref|NP_930976.1| type III secretion system protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787067|emb|CAE16142.1| Type III secretion component protein SctQ [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 310

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++ V +   +G   + +  L +L  G ++ L      +V I +N + +  G +    +
Sbjct: 236 LNDLEVHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGAVRILVNQKCLGSGRLV---D 292

Query: 132 DDTHFGVRV 140
            +   GVRV
Sbjct: 293 IEGRLGVRV 301


>gi|322615098|gb|EFY12021.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619939|gb|EFY16812.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622251|gb|EFY19096.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627773|gb|EFY24563.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632882|gb|EFY29626.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636627|gb|EFY33330.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641180|gb|EFY37822.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644885|gb|EFY41418.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650279|gb|EFY46693.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655852|gb|EFY52154.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660178|gb|EFY56417.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665256|gb|EFY61444.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669513|gb|EFY65661.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673439|gb|EFY69541.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677367|gb|EFY73431.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679970|gb|EFY76009.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687442|gb|EFY83414.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194105|gb|EFZ79304.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198586|gb|EFZ83687.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202912|gb|EFZ87947.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208632|gb|EFZ93570.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211168|gb|EFZ96015.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217609|gb|EGA02324.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218958|gb|EGA03468.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223788|gb|EGA08092.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229411|gb|EGA13534.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232634|gb|EGA16730.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240328|gb|EGA24372.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242683|gb|EGA26704.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245894|gb|EGA29882.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252458|gb|EGA36305.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256477|gb|EGA40210.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260040|gb|EGA43665.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267196|gb|EGA50681.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271480|gb|EGA54901.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 322

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S       T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313


>gi|107025883|ref|YP_623394.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia AU 1054]
 gi|116692933|ref|YP_838466.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia HI2424]
 gi|170737802|ref|YP_001779062.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
 gi|105895257|gb|ABF78421.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia AU 1054]
 gi|116650933|gb|ABK11573.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia HI2424]
 gi|169819990|gb|ACA94572.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
          Length = 384

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           +  +    + + P + D+         + D +    V ++  L    M +  L  L  G 
Sbjct: 281 MPLEPTRTDSAPPTTHDAPPA--DVPRSLDGLA---VDLRFELPPTSMPLGELSALQPGA 335

Query: 101 VITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           VI L + + +SV  +  N   I  G +  + +     GVRV+ +   
Sbjct: 336 VIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 379


>gi|33593241|ref|NP_880885.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|29603233|emb|CAC79578.1| bscQ [Bordetella pertussis Tohama I]
 gi|33563616|emb|CAE42517.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382650|gb|AEE67497.1| putative type III secretion protein [Bordetella pertussis CS]
          Length = 359

 Score = 51.4 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
             ++   + +     ++EP + D      ++    D    IPV++   LG     ++ L 
Sbjct: 249 AEHASFRVTQGWTPIMTEPATPDPGETPAQADATLDT-DQIPVRLTFDLGEREFTLAQLR 307

Query: 95  NLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +L  G    L++ + +  V +  N   +  G +    + D   GV +  +
Sbjct: 308 SLHPGCTFDLERPIADGPVMVRANGLLLGSGRLV---DIDGRIGVVLQSV 354


>gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
           2396]
 gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
           2396]
          Length = 318

 Score = 51.4 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
            P++SD+ +  E      D + N+ +K++  LGS  + ++ L  +++G    L   +   
Sbjct: 220 TPMTSDTQHTPEPLDAPSD-LGNLELKLEFHLGSLNLTLAELSQMTEGAAFDLGLSLEAP 278

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           V + +N Q +A+ E+  ++       VR+ 
Sbjct: 279 VAMKVNGQTLARCELVEIDGRLGARVVRLT 308


>gi|146305086|ref|YP_001185551.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
 gi|145573287|gb|ABP82819.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
          Length = 133

 Score = 51.0 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 42/129 (32%), Gaps = 3/129 (2%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
                    +    +    + P    E   + +       P    ++ +  +       I
Sbjct: 2   STEHLSQESLQEMAEMDADALPEGFEERPGEMHLEGQEFAPQDEHASAVEPQQMAALGSI 61

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
            ++P+++ +  G   + +  L  L  G V+ +         +    + + +GE+    + 
Sbjct: 62  AHLPLQLTLRCGQLTLSVDQLRQLGSGSVLEIHGVAPGHATLCHGERVVGEGELV---DV 118

Query: 133 DTHFGVRVI 141
           D   G+++ 
Sbjct: 119 DGRLGLQIT 127


>gi|206563882|ref|YP_002234645.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092661|gb|AAK50139.1| BcscQ [Burkholderia cenocepacia]
 gi|198039922|emb|CAR55899.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 366

 Score = 51.0 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           +  +    + + P + D+      +  + D +    V ++  L    M +  L  L  G 
Sbjct: 263 MPLEPTRTDSAPPTTHDAPP--GDAPRSLDGLA---VDLRFELPPTSMPLGELSALQPGA 317

Query: 101 VITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           VI L + + +SV  +  N   I  G +  + +     GVRV+ +   
Sbjct: 318 VIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 361


>gi|217077700|ref|YP_002335418.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
 gi|217037555|gb|ACJ76077.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
          Length = 329

 Score = 51.0 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V++ + +G   + + +++NL  GDVI LD    + + I +N +    G   +       +
Sbjct: 259 VELSVAVGETNLTLWDILNLEVGDVIRLDTFKEDPLKIKLNGKDKFLG---VPGVFKGKY 315

Query: 137 GVRVIEILNAQ 147
            V+++E+L+ +
Sbjct: 316 AVKIVEVLDEE 326


>gi|284007399|emb|CBA72809.1| type III secretion apparatus protein YscQ,HrcQ,SpaO [Arsenophonus
           nasoniae]
          Length = 292

 Score = 51.0 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
               D  +Q+  +   TN++ + +   +  + S   +   +NIL +  D      +IP+ 
Sbjct: 166 QQTYDVVIQNKVIGHFTNDNGVYMVNTNFYDESIDDTISEDNILIEPGDKIRSKDDIPIT 225

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           ++ IL    + +  L N+ +G V+  D     +V I  N   IAKG I  +E+     GV
Sbjct: 226 LEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIED---RLGV 282

Query: 139 RVIEILNAQ 147
            +  + + +
Sbjct: 283 EITHLFHNE 291


>gi|29839806|ref|NP_828912.1| type III secretion system protein [Chlamydophila caviae GPIC]
 gi|29834153|gb|AAP04790.1| type III secretion translocase SctQ [Chlamydophila caviae GPIC]
          Length = 371

 Score = 51.0 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
           K+        + +   + L++G V+  +         VD+ +N  K+ +GEI  + +   
Sbjct: 308 KLVAEASRYSLTVEEFLKLTQGSVLNFNGV--HPSRGVDLILNGAKVGRGEIVSLGDV-- 363

Query: 135 HFGVRVIEI 143
             G+RV+E+
Sbjct: 364 -LGIRVLEV 371


>gi|170738280|ref|YP_001779540.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
 gi|169820468|gb|ACA95050.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
          Length = 364

 Score = 51.0 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           D    P+    +   + S D  +L    PV  +I   +  + ++ L  L  G VI L   
Sbjct: 270 DRNDHPVPGAPDAETQTSLDELEL----PVSFEIE--TVTLPLAQLSALRPGYVIELRGT 323

Query: 108 VGES-VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + ++ + +    Q I  GE+  + E     GVRVI++  +
Sbjct: 324 LRDARIRLLAYGQLIGIGELVTVGE---QLGVRVIDVFGS 360


>gi|289433976|ref|YP_003463848.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|315301943|ref|ZP_07872944.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|289170220|emb|CBH26760.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313629685|gb|EFR97817.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|313639060|gb|EFS04047.1| conserved domain protein [Listeria seeligeri FSL S4-171]
          Length = 78

 Score = 51.0 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
            NIP+++   LG     I++L+++ KG V  L+  V   V ITI+ + I  GEI      
Sbjct: 5   HNIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILT---K 61

Query: 133 DTHFGVRVIEI 143
           D    V++ ++
Sbjct: 62  DGKMFVKITKL 72


>gi|146296292|ref|YP_001180063.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409868|gb|ABP66872.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 329

 Score = 51.0 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            S+ +    E++ +     I    V ++ ILG   + +   + L  GDVI LD+R  + +
Sbjct: 235 FSTSAKETSEETKEYLQRKIEKTKVTIRAILGRTKITVREFLELQVGDVIRLDRRKNQEI 294

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           ++ + ++    G   +    +    ++V  +
Sbjct: 295 EVFVGDKLKFYG---VPGRKEGRVAIKVTRV 322


>gi|168187522|ref|ZP_02622157.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
           Eklund]
 gi|169294580|gb|EDS76713.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
           Eklund]
          Length = 331

 Score = 51.0 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEED 132
           + + M ++LGS  + +   ++L  GDVITLD      V + + +    +AK  I      
Sbjct: 257 VELPMSVVLGSTKLDVREFLSLCIGDVITLDALTSSPVKVMVEDEPYLLAKPGIV----- 311

Query: 133 DTHFGVRVIEILNA 146
             + GV++++I++ 
Sbjct: 312 GKNKGVQILDIIDK 325


>gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae]
          Length = 325

 Score = 51.0 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S+++N+  +S  N + I  IP++    +G   +++  L +LS+G +I L   V   V I 
Sbjct: 214 SETDNLANQSLTNLEEI-QIPIRF--EVGRQYIELQALTHLSEGSLIDLAVPVNGDVRII 270

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            N Q +  G++    E     G++V+E+   +
Sbjct: 271 ANQQPLGTGQLV---EIQGRLGIKVVELFAKK 299


>gi|194292013|ref|YP_002007920.1| sctq: non flagellar t3S system conserved protein. flin/mopa/spao
           family. [Cupriavidus taiwanensis LMG 19424]
 gi|193225917|emb|CAQ71864.1| SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO
           family [Cupriavidus taiwanensis LMG 19424]
          Length = 399

 Score = 51.0 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EGR + +      T+ +  +N + M  ++ D    S+PI        + +      +  +
Sbjct: 276 EGRRLLVQAGADSTDSTDVSNGAHM--EEQDPARQSQPI-----PHPDAAQPPLSRLDQL 328

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134
            V ++  +G   + ++ L  ++ G V  L + + +S V I  N  +I  G +  +     
Sbjct: 329 EVTLRFEVGDVAVPLAELRAVAPGYVFELPQPLKQSEVRIVANGNRIGTGTLIAVG---N 385

Query: 135 HFGVRVI 141
             GVR+ 
Sbjct: 386 RLGVRIT 392


>gi|300936201|ref|ZP_07151137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 21-1]
 gi|300458658|gb|EFK22151.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 21-1]
          Length = 315

 Score = 51.0 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      +   ++PVK++ +LG   M +  + +L    +I L     ++++I +N     
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIIPLLPEAEKNIEIRVNGALTG 289

Query: 123 KGEITIMEEDDTHFGVRV 140
            GE+  +++     GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304


>gi|189353517|ref|YP_001949144.1| type III secretion system apparatus protein [Burkholderia
           multivorans ATCC 17616]
 gi|189337539|dbj|BAG46608.1| type III secretion system apparatus protein [Burkholderia
           multivorans ATCC 17616]
          Length = 385

 Score = 51.0 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 24/125 (19%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           + PL+ T   +P          +D      P + D                   V ++  
Sbjct: 279 EMPLEPTRTDTPPATGAA----HDASPADAPRALDGLA----------------VDLRFE 318

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVI 141
           L    M +  L  L  G VI L + + +SV  +  N   I  G +  + +     GVRV+
Sbjct: 319 LPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVV 375

Query: 142 EILNA 146
            +   
Sbjct: 376 TLTQP 380


>gi|189426342|ref|YP_001953519.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
 gi|189422601|gb|ACD96999.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
          Length = 331

 Score = 50.6 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 48  DNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D + E +  D   I  + +      I++ P+++ + LG+  + +  L++L  GD I LDK
Sbjct: 226 DKLKEGMQFDLMAIDPQWSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDK 285

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
                + + +      +G   I      +  +++ +I++ +
Sbjct: 286 PCTSELLVKVEGVPKYQG---IPGIRHGNKAMQISDIISTK 323


>gi|254185166|ref|ZP_04891755.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
 gi|184215758|gb|EDU12739.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
          Length = 335

 Score = 50.6 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S         D   +    +          + D +   
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDASHDTSHDEPTAAHAPPAFDIDAL--- 260

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N +    GE+  + E 
Sbjct: 261 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGCGELIQVGEQ 316


>gi|172063755|ref|YP_001811406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
 gi|171996272|gb|ACB67190.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
          Length = 381

 Score = 50.6 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +      P  +  +   + +  + D +    V ++  L    + +  L  L  G VI L 
Sbjct: 281 EPTRTDTPSVTTHDASADDAPRSLDSLA---VDLRFELPPTSIPLGELGTLQPGAVIELQ 337

Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + + +SV  +  N   I  G++  + +     GVRV+ +   
Sbjct: 338 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 376


>gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 83

 Score = 50.6 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++  L+ ++ V++++ L +       L+N+ +GD+I L+K + + + + + N   A G
Sbjct: 3   TIEDLKLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIG 62

Query: 125 EITIMEEDDTHFGVRVIEILNA 146
           E+T + E    +G+R+++++  
Sbjct: 63  EMTNINE---KYGIRIVDLIKE 81


>gi|293412213|ref|ZP_06654936.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B354]
 gi|291468984|gb|EFF11475.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B354]
          Length = 315

 Score = 50.6 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      +   ++PVK++ +LG   M +  + +L    +I+L     ++++I +N     
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289

Query: 123 KGEITIMEEDDTHFGVRV 140
            GE+  +++     GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304


>gi|218706363|ref|YP_002413882.1| surface presentation of antigens protein SpaO [Escherichia coli
           UMN026]
 gi|298382090|ref|ZP_06991687.1| type III secretion inner membrane protein [Escherichia coli
           FVEC1302]
 gi|331674343|ref|ZP_08375103.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli TA280]
 gi|218433460|emb|CAR14362.1| Type III secretion apparatus protein [Escherichia coli UMN026]
 gi|298277230|gb|EFI18746.1| type III secretion inner membrane protein [Escherichia coli
           FVEC1302]
 gi|331068437|gb|EGI39832.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli TA280]
          Length = 315

 Score = 50.6 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      +   ++PVK++ +LG   M +  + +L    +I+L     ++++I +N     
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289

Query: 123 KGEITIMEEDDTHFGVRV 140
            GE+  +++     GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304


>gi|302037615|ref|YP_003797937.1| flagellar motor switch protein FliM [Candidatus Nitrospira
           defluvii]
 gi|300605679|emb|CBK42012.1| Flagellar motor switch protein FliM [Candidatus Nitrospira
           defluvii]
          Length = 323

 Score = 50.6 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D +    V + + LG+  + + +L+N + GDV+ LD+  G+ +   +      +G+    
Sbjct: 251 DSLQECDVALTVQLGTARINVQDLLNFNPGDVLMLDQHPGDPMLCLVEGDPKFQGQ---P 307

Query: 130 EEDDTHFGVRVIEILN 145
                +   RV +IL 
Sbjct: 308 GIFKGNHACRVTKILG 323


>gi|301026122|ref|ZP_07189596.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 196-1]
 gi|299879817|gb|EFI88028.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 196-1]
          Length = 315

 Score = 50.6 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +  +  L    +I+L     ++++I 
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|293416109|ref|ZP_06658749.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
 gi|291432298|gb|EFF05280.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
          Length = 315

 Score = 50.6 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S+S    E      +   ++PVK++ +LG   M +  +  L    +I+L     ++++I 
Sbjct: 223 SESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|323978517|gb|EGB73599.1| YscQ/HrcQ family protein type III secretion lipoprotein
           [Escherichia coli TW10509]
          Length = 315

 Score = 50.6 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      +   ++PVK++ +LG   M +  + +L    +I+L     ++++I +N     
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289

Query: 123 KGEITIMEEDDTHFGVRV 140
            GE+  +++     GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304


>gi|256024630|ref|ZP_05438495.1| surface presentation of antigens protein SpaO [Escherichia sp.
           4_1_40B]
          Length = 315

 Score = 50.6 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +  +  L    +I+L     ++++I 
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
          Length = 327

 Score = 50.6 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI-NNQKIAKGEITI 128
            LI    + M+ +LG   + + + VNL  GD+I LD++V + +++ + N +K A     +
Sbjct: 251 SLIDRAQIPMKAVLGHSRISVGDFVNLQLGDIIRLDRKVDDELEVYVGNIKKFA----AL 306

Query: 129 MEEDDTHFGVRVIEILNAQ 147
               +  + +R+ E++  +
Sbjct: 307 PGYSEDKYAIRITEVIKEE 325


>gi|300950615|ref|ZP_07164517.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 116-1]
 gi|300958196|ref|ZP_07170350.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 175-1]
 gi|301643798|ref|ZP_07243835.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 146-1]
 gi|307139551|ref|ZP_07498907.1| surface presentation of antigens protein SpaO [Escherichia coli
           H736]
 gi|331643551|ref|ZP_08344682.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli H736]
 gi|300315148|gb|EFJ64932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 175-1]
 gi|300450095|gb|EFK13715.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 116-1]
 gi|301077831|gb|EFK92637.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 146-1]
 gi|309703223|emb|CBJ02558.1| type III secretion system protein [Escherichia coli ETEC H10407]
 gi|331037022|gb|EGI09246.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli H736]
          Length = 315

 Score = 50.6 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +  +  L    +I+L     ++++I 
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|170018890|ref|YP_001723844.1| surface presentation of antigens protein SpaO [Escherichia coli
           ATCC 8739]
 gi|169753818|gb|ACA76517.1| type III secretion system apparatus protein YscQ/HrcQ [Escherichia
           coli ATCC 8739]
 gi|323941616|gb|EGB37796.1| YscQ/HrcQ family protein type III secretion lipoprotein
           [Escherichia coli E482]
          Length = 315

 Score = 50.6 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +  +  L    +I+L     ++++I 
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|292488066|ref|YP_003530943.1| surface presentation of antigens protein SpaO [Erwinia amylovora
           CFBP1430]
 gi|292899277|ref|YP_003538646.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291199125|emb|CBJ46239.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291553490|emb|CBA20535.1| Surface presentation of antigens protein SpaO [Erwinia amylovora
           CFBP1430]
          Length = 307

 Score = 50.6 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           +D  +      +  +   ++P++++ +L S  + ++ L  +  G +  L+    + V I 
Sbjct: 209 TDGYDECRDEDETLNRWSDLPIEIEFVLDSKSVTLAELDTIEPGTLFPLNDCAEQRVKIY 268

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +N +  A+GE+  ++  + +  V + ++
Sbjct: 269 LNRKFFARGELVALD--NGNLAVEIKQV 294


>gi|157162321|ref|YP_001459639.1| surface presentation of antigens protein SpaO [Escherichia coli HS]
 gi|157068001|gb|ABV07256.1| type III secretion apparatus protein EpaO [Escherichia coli HS]
          Length = 315

 Score = 50.6 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +  +  L    +I+L     ++++I 
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|323966656|gb|EGB62088.1| YscQ/HrcQ family protein type III secretion lipoprotein
           [Escherichia coli M863]
 gi|327251617|gb|EGE63303.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli STEC_7v]
          Length = 315

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      +   ++PVK++ +LG   M +  + +L    +I+L     ++++I +N     
Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289

Query: 123 KGEITIMEEDDTHFGVRV 140
            GE+  +++     GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304


>gi|188496341|ref|ZP_03003611.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli 53638]
 gi|188491540|gb|EDU66643.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli 53638]
          Length = 315

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +  +  L    +I+L     ++++I 
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|293416352|ref|ZP_06658991.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
 gi|291431708|gb|EFF04691.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
          Length = 299

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
            +I E        +  +PV +  +L    + ++ L  L +G V+ L     +  +I  N 
Sbjct: 210 QDIQETEQHVVQDLGQLPVSLDFVLFRKQVTLTGLQELYQGKVLALPAEAEKRTEIRANG 269

Query: 119 QKIAKGEITIMEEDDTHFGVRVIE 142
             I  GE+    + D   GV + E
Sbjct: 270 ALIGYGELV---QLDNSLGVEITE 290


>gi|269302491|gb|ACZ32591.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 371

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           ++ + +    + +S  + L+ G +++L       VDI ++  K+ +GEI  + +     G
Sbjct: 309 RLVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LG 365

Query: 138 VRVIEI 143
           +RV+E+
Sbjct: 366 IRVLEV 371


>gi|15618614|ref|NP_224900.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
 gi|15836236|ref|NP_300760.1| type III secretion system protein [Chlamydophila pneumoniae J138]
 gi|16752336|ref|NP_444594.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
 gi|33242062|ref|NP_877003.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
 gi|4377007|gb|AAD18843.1| Flagellar Motor Switch Domain/YscQ family [Chlamydophila pneumoniae
           CWL029]
 gi|6672034|dbj|BAA88654.1| flagellar motor switch domain/YscQ family [Chlamydophila
           pneumoniae]
 gi|8163350|gb|AAF73618.1| type III secretion translocase SctQ [Chlamydophila pneumoniae AR39]
 gi|8979076|dbj|BAA98911.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae
           J138]
 gi|33236572|gb|AAP98660.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183]
          Length = 371

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
           ++ + +    + +S  + L+ G +++L       VDI ++  K+ +GEI  + +     G
Sbjct: 309 RLVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LG 365

Query: 138 VRVIEI 143
           +RV+E+
Sbjct: 366 IRVLEV 371


>gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 332

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           PV++  ++G   + + +L+ L  GDV+ L +RV + +D+ +++Q   K +  ++     +
Sbjct: 259 PVELSAVVGESEITVQDLLQLQVGDVVPLSRRVTQDLDLYVSDQLKFKAQAGVLG---RY 315

Query: 136 FGVRVIEIL 144
             V+V  ++
Sbjct: 316 LAVQVTSLV 324


>gi|116872087|ref|YP_848868.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|315281359|ref|ZP_07869999.1| conserved domain protein [Listeria marthii FSL S4-120]
 gi|116740965|emb|CAK20085.1| flagellar motor switch protein, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|313614998|gb|EFR88502.1| conserved domain protein [Listeria marthii FSL S4-120]
          Length = 78

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
            NIP+++   LG     + +L+++ KG V  L+      V ITI+ + I  GEI      
Sbjct: 5   HNIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---K 61

Query: 133 DTHFGVRVIEI 143
           D    V++ ++
Sbjct: 62  DGKMFVKITKL 72


>gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110]
 gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110]
          Length = 80

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           + V + ++LG+  M I  ++ LS+G +I LD    + V +  NN  +A G + +
Sbjct: 7   VTVDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLV 60


>gi|269836614|ref|YP_003318842.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
           20745]
 gi|269785877|gb|ACZ38020.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
           20745]
          Length = 302

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            ++    + E+   +    +  + + +++ LG   +++++L+ +  GDVI LD     ++
Sbjct: 207 FANPRAGVGEQLERDLAAQLERVSLAVRVELGRVTVRVADLLQVEVGDVIRLDTAADSAL 266

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            + + ++    G+     +      VR++E + 
Sbjct: 267 PVLVEDRVRFLGQ---PGQIAGQLAVRIVERVT 296


>gi|221200569|ref|ZP_03573611.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2M]
 gi|221209244|ref|ZP_03582234.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2]
 gi|221170900|gb|EEE03357.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2]
 gi|221179910|gb|EEE12315.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2M]
          Length = 385

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
           +  +    +      +  +     +    D +    V ++  L    M +  L  L  G 
Sbjct: 280 MPLEPTRTDTPPATGTAHDASPADAPRALDGLA---VDLRFELPPTSMPLGELSALQPGA 336

Query: 101 VITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           VI L + + +SV  +  N   I  G +  + +     GVRV+ +   
Sbjct: 337 VIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 380


>gi|183600579|ref|ZP_02962072.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827]
 gi|188019856|gb|EDU57896.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827]
          Length = 308

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
               + +I++       E          ++    FD +  + +K+  +LG   + ++ L 
Sbjct: 194 QQEGQFMIEETIAPIADESALLQEETFSDEVVKPFD-VNAMTIKLTFVLGQTEITLNELA 252

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           ++  G V ++ +     V +  N Q IA+GE+  + E D   G+ + 
Sbjct: 253 DIQPGAVYSIGENKEREVKVYANKQLIAEGELIYIGESDE-LGLEIT 298


>gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT]
 gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT]
          Length = 331

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 56  SDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
            ++   LE S +     MN+  + M ++LGS  + I   + LS GDVITLD      V +
Sbjct: 237 ENNTETLEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDVITLDSLTSSPVKV 296

Query: 115 TINN--QKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + N    + +           + GV++++I++ 
Sbjct: 297 VVGNEPYLLGR-----PGTIGKNRGVQILDIIDK 325


>gi|32454377|gb|AAP82990.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 303

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLVGNGELVQMNDT---LGVEIHEWLSE 298


>gi|213615825|ref|ZP_03371651.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 158

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S  +    T + + +  IP ++   +G   ++I  L  L  G+V+ +  
Sbjct: 59  VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGNVLPVGG 117

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 118 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 149


>gi|83716524|ref|YP_438950.1| surface presentation of antigens domain-containing protein
           [Burkholderia thailandensis E264]
 gi|257142054|ref|ZP_05590316.1| surface presentation of antigens domain-containing protein
           [Burkholderia thailandensis E264]
 gi|83650349|gb|ABC34413.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia thailandensis E264]
          Length = 423

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIMNIPVKM 79
           D+P  D+   SP +     +  +   + ++P +  S +    +         + ++ + +
Sbjct: 296 DSPA-DSRGDSPADPLADSLADSPAGSPADPQADSSLDSSSDAPCCAPEPADLGDVELPV 354

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
            + L +  + I+ L  L  G V+ L        V +    Q I  G +  +     H GV
Sbjct: 355 HVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVAVG---AHLGV 411

Query: 139 RV 140
           R+
Sbjct: 412 RI 413


>gi|313634375|gb|EFS00970.1| conserved domain protein [Listeria seeligeri FSL N1-067]
          Length = 78

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+++   LG     I++L+++ KG V  L+  V   V ITI+ + I  GEI      D 
Sbjct: 7   IPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILT---KDG 63

Query: 135 HFGVRVIEI 143
              V++ ++
Sbjct: 64  KMFVKITKL 72


>gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 229

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           Q+ND  + +   +    +  E    +  L   +PV +  IL    + +  L  + +G+VI
Sbjct: 126 QENDDGDDAGNENKVHEHHPEDQKKSSSLCAQVPVTLTFILQKNKVTVEKLEKMYEGEVI 185

Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            L+  + E ++I  NN +IA+G++  ME  +   GV + ++  ++
Sbjct: 186 PLEPSIEERIEIRANNVRIARGKLLGME--NGALGVELTQLYQSK 228


>gi|170704156|ref|ZP_02894757.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria IOP40-10]
 gi|170130934|gb|EDS99660.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria IOP40-10]
          Length = 193

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +      P ++  +   + +  + D +    V ++  L    + +  L  L  G VI L 
Sbjct: 93  EPTRTDTPSATTHDASADDAPRSLDGLA---VDLRFELPPTSIPLGELGALQPGAVIELQ 149

Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + + +SV  +  N   I  G++  + +     GVRV+ +   
Sbjct: 150 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 188


>gi|293406355|ref|ZP_06650281.1| type III secretion inner membrane protein [Escherichia coli
           FVEC1412]
 gi|291426361|gb|EFE99393.1| type III secretion inner membrane protein [Escherichia coli
           FVEC1412]
          Length = 308

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      +   ++PVK++ +LG   M +  + +L    +I+L     ++++I +N     
Sbjct: 223 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 282

Query: 123 KGEITIMEEDDTHFGVRV 140
            GE+  +++     GV +
Sbjct: 283 YGELVEVDD---KLGVEI 297


>gi|261344592|ref|ZP_05972236.1| putative surface presentation of antigens protein [Providencia
           rustigianii DSM 4541]
 gi|282567506|gb|EFB73041.1| putative surface presentation of antigens protein [Providencia
           rustigianii DSM 4541]
          Length = 309

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
            EP +++              + ++ VK+  +LG   + ++ L ++  G + ++ +    
Sbjct: 210 DEPTNTEMEEAFVDEAARPFNVNDLTVKLTFVLGHSEVSLAELNHMQPGTIFSIGENKER 269

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145
            V +  N Q  A+GE+T + E +   G+ +  +++
Sbjct: 270 EVKVYANKQLFAEGELTYIGESEE-LGLEITRLVS 303


>gi|187919911|ref|YP_001888942.1| surface presentation of antigens (SPOA) protein [Burkholderia
           phytofirmans PsJN]
 gi|187718349|gb|ACD19572.1| surface presentation of antigens (SPOA) protein [Burkholderia
           phytofirmans PsJN]
          Length = 327

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ--IILGSCCMQISNLVNLS 97
           +L    +   I++P+  D+N   E ++   +LI    +      ++G+  + +  L+ L 
Sbjct: 217 LLQPSGEYMVIAQPMIDDANQSAEMTS---ELIPASALTFSFDAVIGTLSLTLDELMRLR 273

Query: 98  KGDVITLDKRVG-ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            G  ++L + VG  ++ +       A+GE+  +++     GVR++++
Sbjct: 274 TGSTVSLQQPVGRHAIRLLCQGIPFARGELIDIDDA---LGVRIVDL 317


>gi|300898066|ref|ZP_07116434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 198-1]
 gi|300358204|gb|EFJ74074.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 198-1]
          Length = 239

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      +   ++PVK++ +LG   M +  + +L    +I+L     ++++I +N     
Sbjct: 154 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 213

Query: 123 KGEITIMEEDDTHFGVRV 140
            GE+  +++     GV +
Sbjct: 214 YGELVEVDD---KLGVEI 228


>gi|148380702|ref|YP_001255243.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934250|ref|YP_001384986.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934570|ref|YP_001388456.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           Hall]
 gi|170761147|ref|YP_001788060.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
           Loch Maree]
 gi|226950156|ref|YP_002805247.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290186|emb|CAL84305.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930294|gb|ABS35794.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930484|gb|ABS35983.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           Hall]
 gi|169408136|gb|ACA56547.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
           Loch Maree]
 gi|226842452|gb|ACO85118.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
           Kyoto]
 gi|322807053|emb|CBZ04627.1| flagellar motor switch protein FliM [Clostridium botulinum H04402
           065]
          Length = 331

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
             +D  +I + S+   + I  + +++   LG   + +   + L+ GDV+ LD R  E V 
Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVALDTRTEEPVH 295

Query: 114 ITI 116
           + I
Sbjct: 296 LLI 298


>gi|300906598|ref|ZP_07124289.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 84-1]
 gi|301303010|ref|ZP_07209137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 124-1]
 gi|300401637|gb|EFJ85175.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 84-1]
 gi|300841674|gb|EFK69434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 124-1]
 gi|315256735|gb|EFU36703.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 85-1]
          Length = 315

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +  +  L    +I+L     ++++I 
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|134282102|ref|ZP_01768808.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
 gi|134246631|gb|EBA46719.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
          Length = 331

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNILEKSTDNFDLIMN 74
           EG ++ ++ PL D+ + +  + S         D    EP ++ +         + D +  
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDASHDEPTAAHAPPAF-----DIDAL-- 256

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
            PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 257 -PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 312


>gi|310823556|ref|YP_003955914.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396628|gb|ADO74087.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
           aurantiaca DW4/3-1]
          Length = 379

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +PV+++I L    + +S L  L  G ++ L   V E V + + ++ +A+ E+    + D 
Sbjct: 312 LPVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELV---DIDG 368

Query: 135 HFGVRVIEIL 144
             G R++ +L
Sbjct: 369 EIGARILSLL 378


>gi|114765265|ref|ZP_01444397.1| Flagellar motor switch protein fliM [Pelagibaca bermudensis
           HTCC2601]
 gi|114542400|gb|EAU45428.1| Flagellar motor switch protein fliM [Roseovarius sp. HTCC2601]
          Length = 313

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D++ +  V M  ++G   + + +++  + G V+ L  +V + V +    ++IA+ E  + 
Sbjct: 229 DMLGSTNVPMSAVMGQAVLPMRDVLAWAPGQVLDLGIQVDDPVTLCCAGKEIARAE--VG 286

Query: 130 EEDDTHFGVRVIE 142
              +    +++ E
Sbjct: 287 HRKNGRIALKLSE 299


>gi|213023716|ref|ZP_03338163.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 140

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           V +I   ++S S  +    T + + +  IP ++   +G   ++I  L  L  GDV+ +  
Sbjct: 41  VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 99

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
                V I +N++ I +GE+         F VR+ 
Sbjct: 100 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 131


>gi|258514031|ref|YP_003190253.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777736|gb|ACV61630.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 334

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 26/45 (57%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
            + +  + G   + + + + L +GDV+TLD+R+ E VD+ +  + 
Sbjct: 261 ELTLTAVAGETKISVRDFLQLQEGDVLTLDRRIDEDVDLFLEEKL 305


>gi|171323088|ref|ZP_02911720.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171091517|gb|EDT37147.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 193

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +      P ++  +   + +  + D +    V ++  L    + +  L  L  G VI L 
Sbjct: 93  EPTRTDTPSATTHDASADDAPRSLDGLA---VDLRFELPPTSIPLGELGALQPGAVIELQ 149

Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + + +SV  +  N   I  G++  + +     GVRV+ +   
Sbjct: 150 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 188


>gi|254519440|ref|ZP_05131496.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
 gi|226913189|gb|EEH98390.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
          Length = 331

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 56  SDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           +D + + +++ +     ++ + V M + LG   + + + + L  GDV+ L+ +  + V +
Sbjct: 237 TDESELEDEAREKLKKGLDPVKVNMHVELGKTEITVDDFLELVNGDVLVLNSQYSDPVRV 296

Query: 115 TINNQ--KIAKGEITIMEEDDTHFGVRVIEILNA 146
            + N+   IAK  I        + G+++++IL+ 
Sbjct: 297 FVENEECFIAKPGIV-----GKNMGIQLLDILDK 325


>gi|259908639|ref|YP_002648995.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
 gi|224964261|emb|CAX55768.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
 gi|283478611|emb|CAY74527.1| Surface presentation of antigens protein SpaO [Erwinia pyrifoliae
           DSM 12163]
          Length = 308

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P++++ +L S    ++ L  +  G    L++   + V I +N +  A+GE+  ++  +
Sbjct: 227 DLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKIYLNRKFFARGELVALD--N 284

Query: 134 THFGVRVIEI 143
            +  V + +I
Sbjct: 285 GNLAVEIRQI 294


>gi|115379115|ref|ZP_01466239.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363898|gb|EAU63009.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 342

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +PV+++I L    + +S L  L  G ++ L   V E V + + ++ +A+ E+    + D 
Sbjct: 275 LPVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELV---DIDG 331

Query: 135 HFGVRVIEIL 144
             G R++ +L
Sbjct: 332 EIGARILSLL 341


>gi|54124953|gb|AAV30221.1| AscQ [Aeromonas hydrophila]
          Length = 308

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 60  NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           N       +   +  +PV++   +G   +    L  L  G +I L   +   V I  N  
Sbjct: 222 NAAPDDALDPSQLEGLPVQVTFEVGRQTLDWHTLTTLQPGSLIDLGAPIDGEVRIISNGH 281

Query: 120 KIAKGEITIMEEDDTHFGVRV 140
            +  G +    E     GVRV
Sbjct: 282 LLGNGRLV---EIQGRLGVRV 299


>gi|154250207|ref|YP_001411032.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154143|gb|ABS61375.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
           Rt17-B1]
          Length = 329

 Score = 49.5 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 59  NNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
             + ++  +N  L I    + +   +G   + +  ++ L  GDVI L +   E + I +N
Sbjct: 240 KEVTQELVENLKLNIKKAKLDVIAKIGETKLTLGEILTLEVGDVIRLREHYDEPIKIEVN 299

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +    G+     +   ++ V++ +++  
Sbjct: 300 GKTKFLGK---PGQFKGNYAVKITKVIEE 325


>gi|310767461|gb|ADP12411.1| Type III secretion apparatus [Erwinia sp. Ejp617]
          Length = 308

 Score = 49.5 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P++++ +L S    ++ L  +  G    L++   + V I +N +  A+GE+  ++  +
Sbjct: 227 DLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKIYLNRKFFARGELVALD--N 284

Query: 134 THFGVRVIEI 143
            +  V + +I
Sbjct: 285 GNLAVEIRQI 294


>gi|254193852|ref|ZP_04900284.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
 gi|169650603|gb|EDS83296.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
          Length = 428

 Score = 49.5 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 328 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 387

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 388 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 418


>gi|167567223|ref|ZP_02360139.1| RhcQ protein [Burkholderia oklahomensis EO147]
          Length = 104

 Score = 49.5 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 51  SEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           S    SD     ++ + N      L+ +IP+ +  ++G     +  L +++ GDV+ L +
Sbjct: 7   SAQSQSDEPRFEQEPSRNGKADPSLLDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGR 66

Query: 107 RVGESVDITINNQKIAKGEITIME 130
                V I  +   I  GE   + 
Sbjct: 67  NPHGQVSIEAHGVMIGYGEFVEIG 90


>gi|16802740|ref|NP_464225.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|46906949|ref|YP_013338.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091660|ref|ZP_00229456.1| flagellar motor switch protein, putative [Listeria monocytogenes
           str. 4b H7858]
 gi|47095264|ref|ZP_00232875.1| flagellar motor switch protein, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|217965204|ref|YP_002350882.1| hypothetical protein LMHCC_1927 [Listeria monocytogenes HCC23]
 gi|224498780|ref|ZP_03667129.1| flagellar motor switch protein [Listeria monocytogenes Finland
           1988]
 gi|224501997|ref|ZP_03670304.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|226223329|ref|YP_002757436.1| flagellar switch protein [Listeria monocytogenes Clip81459]
 gi|254824022|ref|ZP_05229023.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|254829355|ref|ZP_05234042.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|254830311|ref|ZP_05234966.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
 gi|254853098|ref|ZP_05242446.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|254900066|ref|ZP_05259990.1| flagellar motor switch protein [Listeria monocytogenes J0161]
 gi|254911381|ref|ZP_05261393.1| flagellar motor switch protein [Listeria monocytogenes J2818]
 gi|254932022|ref|ZP_05265381.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|254935708|ref|ZP_05267405.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|254994392|ref|ZP_05276582.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-064]
 gi|255027497|ref|ZP_05299483.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
 gi|255030383|ref|ZP_05302334.1| flagellar motor switch protein [Listeria monocytogenes LO28]
 gi|255521911|ref|ZP_05389148.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
 gi|284801028|ref|YP_003412893.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994170|ref|YP_003415938.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|290893995|ref|ZP_06556970.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|300764510|ref|ZP_07074503.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017]
 gi|16410087|emb|CAC98776.1| lmo0698 [Listeria monocytogenes EGD-e]
 gi|46880215|gb|AAT03515.1| putative flagellar motor switch protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47016335|gb|EAL07257.1| flagellar motor switch protein, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|47019979|gb|EAL10716.1| flagellar motor switch protein, putative [Listeria monocytogenes
           str. 4b H7858]
 gi|217334474|gb|ACK40268.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|225875791|emb|CAS04494.1| Putative flagellar switch protein [Listeria monocytogenes serotype
           4b str. CLIP 80459]
 gi|258601768|gb|EEW15093.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258606447|gb|EEW19055.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|258608291|gb|EEW20899.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|284056590|gb|ADB67531.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059637|gb|ADB70576.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|290556441|gb|EFD89980.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|293583574|gb|EFF95606.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293589318|gb|EFF97652.1| flagellar motor switch protein [Listeria monocytogenes J2818]
 gi|293593250|gb|EFG01011.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|300514864|gb|EFK41918.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017]
 gi|307570237|emb|CAR83416.1| flagellar motor switch protein, putative [Listeria monocytogenes
           L99]
 gi|313610116|gb|EFR85439.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
 gi|313620067|gb|EFR91580.1| conserved domain protein [Listeria innocua FSL S4-378]
 gi|328467264|gb|EGF38344.1| flagellar motor switch protein [Listeria monocytogenes 1816]
 gi|328475660|gb|EGF46409.1| flagellar motor switch protein [Listeria monocytogenes 220]
 gi|332311123|gb|EGJ24218.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 78

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+++   LG     + +L+++ KG V  L+      V ITI+ + I  GEI      D 
Sbjct: 7   IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---KDG 63

Query: 135 HFGVRVIEI 143
              V++ ++
Sbjct: 64  KMFVKITKL 72


>gi|254186718|ref|ZP_04893234.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934402|gb|EDO90072.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 428

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 328 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 387

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 388 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 418


>gi|168699681|ref|ZP_02731958.1| hypothetical protein GobsU_09169 [Gemmata obscuriglobus UQM 2246]
          Length = 283

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            +S P++    + +E             V+M +ILG   + + ++ +L+ GDVI  D++V
Sbjct: 195 GLSPPVTPAPKSEIESVVRAMS------VEMSVILGRADLTMRDVSDLTTGDVIVFDQKV 248

Query: 109 GESVDITINN 118
            E +D  ++ 
Sbjct: 249 TEPLDGLVSG 258


>gi|76819487|ref|YP_335588.1| SctQ [Burkholderia pseudomallei 1710b]
 gi|76583960|gb|ABA53434.1| SctQ [Burkholderia pseudomallei 1710b]
          Length = 435

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 335 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 394

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 395 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 425


>gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum
           BKT015925]
 gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum
           BKT015925]
          Length = 331

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 56  SDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
            +  + LE+S +     MN+  + M+ +LGS  + +   + LS GDV+TLD      V +
Sbjct: 237 ENDTDTLEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDVVTLDALTSSPVKM 296

Query: 115 TINNQ--KIAKGEITIMEEDDTHFGVRVIEILNA 146
            + NQ   +AK           + GV++++I++ 
Sbjct: 297 MVGNQPYLLAK-----PGTMGKNRGVQILDIIDK 325


>gi|255023254|ref|ZP_05295240.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208]
          Length = 78

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+++   LG     + +L+++ KG V  L+      V ITI+ + I  GEI      D 
Sbjct: 7   IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---KDG 63

Query: 135 HFGVRVIEI 143
              V++ ++
Sbjct: 64  KMFVKITKL 72


>gi|4206077|gb|AAD11410.1| SctQ [Burkholderia pseudomallei]
          Length = 310

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 210 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 269

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 270 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 300


>gi|224584669|ref|YP_002638467.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224469196|gb|ACN47026.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 299

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 208 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 267

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 268 NGVLLGNGELVQMNDT---LGVEIHEWLSE 294


>gi|167724021|ref|ZP_02407257.1| SctQ [Burkholderia pseudomallei DM98]
          Length = 359

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|32454381|gb|AAP82992.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 303

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|62181393|ref|YP_217810.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129026|gb|AAX66729.1| surface presentation of antigens; secretory proteins [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715877|gb|EFZ07448.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 303

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|167850203|ref|ZP_02475711.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei B7210]
 gi|254193901|ref|ZP_04900333.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
 gi|169650652|gb|EDS83345.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
          Length = 327

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S         D   EP ++ +         + D +   
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHD---EPTAAHAPPAF-----DIDAL--- 252

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 253 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 308


>gi|188534037|ref|YP_001907834.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
 gi|188029079|emb|CAO96947.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 309

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++ V+++ +L S    ++ L  +  G ++ L++   + V I +N +  A+GE+  +E   
Sbjct: 227 DLSVEIEFVLDSKSYTLTELDAIHPGMILPLNQDAEKRVKIYLNKKFFARGELVALE--S 284

Query: 134 THFGVRVIEI 143
            +  V + +I
Sbjct: 285 GNLAVEINQI 294


>gi|167923137|ref|ZP_02510228.1| SctQ [Burkholderia pseudomallei BCC215]
 gi|217425374|ref|ZP_03456868.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
 gi|217391625|gb|EEC31653.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
          Length = 359

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|53722430|ref|YP_111415.1| type III secretion-associated protein [Burkholderia pseudomallei
           K96243]
 gi|52212844|emb|CAH38878.1| putative type III secretion-associated protein [Burkholderia
           pseudomallei K96243]
          Length = 310

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 210 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 269

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 270 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 300


>gi|167820161|ref|ZP_02451841.1| SctQ [Burkholderia pseudomallei 91]
          Length = 359

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|48479064|gb|AAT44855.1| putative type III secretory pathway and flagellar biosynthesis
           protein [Burkholderia pseudomallei]
          Length = 310

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 210 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 269

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 270 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 300


>gi|323143898|ref|ZP_08078560.1| putative type III secretion apparatus protein, YscQ/HrcQ family
           [Succinatimonas hippei YIT 12066]
 gi|322416325|gb|EFY06997.1| putative type III secretion apparatus protein, YscQ/HrcQ family
           [Succinatimonas hippei YIT 12066]
          Length = 315

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
             + +P   +   +Q   + ++ +  S D     E+       I ++ + +   L S  +
Sbjct: 208 EGLQAPAQYNAEQLQITLLSSLQKTDSGDDMADSEE----LTTIEDVELTINFSLESIKL 263

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +S++  L++G V+ L+    E++ + +  + I  G I  +   +    +++  I
Sbjct: 264 PLSSIKELTEGSVLDLNNSALENIAVKLEGKTIGYGRIIEVGGKN---ALQITRI 315


>gi|188586031|ref|YP_001917576.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350718|gb|ACB84988.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 333

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E+S    + +    V ++  L    + +   +NL +GDVI+L+K     +D+ +  +   
Sbjct: 246 EESQALKNRLHKTQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKF 305

Query: 123 KGEITIMEEDDTHFGVRVIEIL 144
           KG+            V++ +I+
Sbjct: 306 KGK---PGSIKNKLAVQITQIV 324


>gi|126457706|ref|YP_001075941.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|167849994|ref|ZP_02475502.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei B7210]
 gi|242313295|ref|ZP_04812312.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
 gi|126231474|gb|ABN94887.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|242136534|gb|EES22937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
          Length = 359

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|167906945|ref|ZP_02494150.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei NCTC 13177]
          Length = 359

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S ++   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASADLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|161615803|ref|YP_001589768.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168261986|ref|ZP_02683959.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|161365167|gb|ABX68935.1| hypothetical protein SPAB_03594 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205349239|gb|EDZ35870.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 303

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|38639350|gb|AAR25816.1| BcscQ [Burkholderia multivorans E243]
          Length = 383

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTH 135
           V ++  L    M +  L  L  G VI L   + +SV  +  N   I  G++  + +    
Sbjct: 311 VDLRFELPPTSMPLGELGTLQPGAVIELSHGINQSVIHLVANGMLIGTGQLIAVGQ---K 367

Query: 136 FGVRVIEILNA 146
            GVRV+ +   
Sbjct: 368 LGVRVVTLTPP 378


>gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
 gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
          Length = 331

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 54  ISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
                 +IL +S +     ++I  V++  ILG+  + +   +NL+ GDV+TL ++    V
Sbjct: 235 FQDSDEDILNESREKLRNRLDIVDVELTAILGTVDVTVQEFLNLNVGDVLTLKEKTTSPV 294

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + + ++    G+  ++++   + GV +++IL+ 
Sbjct: 295 KLMVEDKVYYYGKPGVIDK---NMGVEILDILDK 325


>gi|167742990|ref|ZP_02415764.1| SctQ [Burkholderia pseudomallei 14]
 gi|167828536|ref|ZP_02460007.1| SctQ [Burkholderia pseudomallei 9]
 gi|167898603|ref|ZP_02486004.1| SctQ [Burkholderia pseudomallei 7894]
 gi|226199135|ref|ZP_03794697.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
 gi|254264504|ref|ZP_04955369.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
 gi|225928910|gb|EEH24935.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
 gi|254215506|gb|EET04891.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
          Length = 359

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|254301601|ref|ZP_04969045.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
 gi|157811292|gb|EDO88462.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
          Length = 359

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|237509496|ref|ZP_04522211.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
 gi|235001701|gb|EEP51125.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
          Length = 359

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASAGLGVVATDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|254183804|ref|ZP_04890396.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
 gi|184214337|gb|EDU11380.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
          Length = 359

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASAGLGVVATDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|168820412|ref|ZP_02832412.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205342820|gb|EDZ29584.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320087296|emb|CBY97061.1| Surface presentation of antigens protein spaO [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 303

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|168242628|ref|ZP_02667560.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168463974|ref|ZP_02697891.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194450652|ref|YP_002046851.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|200389219|ref|ZP_03215831.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238909658|ref|ZP_04653495.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|194408956|gb|ACF69175.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195633160|gb|EDX51574.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|199606317|gb|EDZ04862.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205338000|gb|EDZ24764.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 303

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|167915304|ref|ZP_02502395.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 112]
          Length = 347

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 247 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 306

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 307 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 337


>gi|197247897|ref|YP_002147788.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211600|gb|ACH48997.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 303

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|56414843|ref|YP_151918.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363771|ref|YP_002143408.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|32454369|gb|AAP82986.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454371|gb|AAP82987.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454379|gb|AAP82991.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|56129100|gb|AAV78606.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|189490720|gb|ACE00521.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267491|gb|ACF35726.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267493|gb|ACF35727.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267495|gb|ACF35728.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267497|gb|ACF35729.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267499|gb|ACF35730.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267501|gb|ACF35731.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267503|gb|ACF35732.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267505|gb|ACF35733.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267507|gb|ACF35734.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267509|gb|ACF35735.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267511|gb|ACF35736.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267513|gb|ACF35737.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267515|gb|ACF35738.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267517|gb|ACF35739.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267519|gb|ACF35740.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267521|gb|ACF35741.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267523|gb|ACF35742.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267525|gb|ACF35743.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267527|gb|ACF35744.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267529|gb|ACF35745.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267531|gb|ACF35746.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267533|gb|ACF35747.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267535|gb|ACF35748.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267537|gb|ACF35749.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267539|gb|ACF35750.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267541|gb|ACF35751.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267543|gb|ACF35752.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267545|gb|ACF35753.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|197095248|emb|CAR60799.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 303

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|16766197|ref|NP_461812.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167550260|ref|ZP_02344017.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993126|ref|ZP_02574221.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230961|ref|ZP_02656019.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471466|ref|ZP_03077450.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197264022|ref|ZP_03164096.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|730795|sp|P40699|SPAO_SALTY RecName: Full=Surface presentation of antigens protein SpaO
 gi|404290|emb|CAA51924.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|973261|gb|AAC43965.1| SpaO [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|975774|gb|AAC43863.1| SpaO [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16421439|gb|AAL21771.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194457830|gb|EDX46669.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197242277|gb|EDY24897.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205324834|gb|EDZ12673.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328724|gb|EDZ15488.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334615|gb|EDZ21379.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|261248027|emb|CBG25860.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995019|gb|ACY89904.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159450|emb|CBW18968.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913909|dbj|BAJ37883.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223440|gb|EFX48506.1| Surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323131243|gb|ADX18673.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989763|gb|AEF08746.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 303

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|194442226|ref|YP_002042132.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|198245837|ref|YP_002216860.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205353834|ref|YP_002227635.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858153|ref|YP_002244804.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|60415909|sp|P0A1K7|SPAO_SALDU RecName: Full=Surface presentation of antigens protein SpaO
 gi|60415910|sp|P0A1K8|SPAO_SALEN RecName: Full=Surface presentation of antigens protein SpaO
 gi|973257|gb|AAC43935.1| SpaO [Salmonella enterica subsp. enterica serovar Dublin]
 gi|973265|gb|AAC43962.1| SpaO [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|975778|gb|AAC43854.1| SpaO [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|194400889|gb|ACF61111.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197940353|gb|ACH77686.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205273615|emb|CAR38602.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206709956|emb|CAR34310.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326628943|gb|EGE35286.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 303

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|134282546|ref|ZP_01769250.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
 gi|134246103|gb|EBA46193.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
          Length = 337

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S  +   +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 237 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 296

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 297 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 327


>gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
           4359]
 gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
           4359]
          Length = 328

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +P+ +Q ++G   + +  ++NL +GDVI L+    + + I +  +   +G   I  +   
Sbjct: 255 VPLTVQAVIGEAWLTLREVLNLQEGDVIRLNTHYKDEIRIDVEGKPKFRG---IPGKYKG 311

Query: 135 HFGVRVI 141
            + V++ 
Sbjct: 312 KYAVKIT 318


>gi|83717115|ref|YP_439032.1| type III secretion system protein BsaV [Burkholderia thailandensis
           E264]
 gi|167615589|ref|ZP_02384224.1| type III secretion system protein BsaV [Burkholderia thailandensis
           Bt4]
 gi|257142140|ref|ZP_05590402.1| type III secretion system protein BsaV [Burkholderia thailandensis
           E264]
 gi|83650940|gb|ABC35004.1| type III secretion system protein BsaV [Burkholderia thailandensis
           E264]
          Length = 320

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
           E L +    D+   P ++D+         + D +   PV ++ +L    + ++ L     
Sbjct: 212 EPLAEHAIDDSHDSPATADAPPDASPPAFDIDAL---PVTLEFVLQDERVTVAQLAGCHP 268

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           G V+ L    GE V I  N Q    GE+  + + 
Sbjct: 269 GLVLPLRGVPGE-VTIRANGQPFGIGELIQVGDQ 301


>gi|313624713|gb|EFR94668.1| conserved domain protein [Listeria innocua FSL J1-023]
          Length = 78

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+++   LG     + +L+++ KG V  L+      V ITI+ + I  GEI      D 
Sbjct: 7   IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---KDG 63

Query: 135 HFGVRVIEI 143
              V++ ++
Sbjct: 64  KMFVKITKL 72


>gi|124516745|gb|EAY58253.1| Flagellar motor switch protein FliM [Leptospirillum rubarum]
          Length = 338

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAK 123
           P++++  +G     + +++    GDV +LD+ V E V++ +    + +A+
Sbjct: 258 PLEIEAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLAR 307


>gi|15834668|ref|NP_296427.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270284833|ref|ZP_06194227.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270288862|ref|ZP_06195164.1| type III secretion system protein [Chlamydia muridarum Weiss]
 gi|301336213|ref|ZP_07224415.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
 gi|8163109|gb|AAF73521.1| type III secretion translocase SctQ [Chlamydia muridarum Nigg]
          Length = 373

 Score = 48.7 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134
           K+   +    + +   + L  G ++  +         VDI +N  K+ +G I  +++   
Sbjct: 310 KIVAEVARYTLSVGEFLKLEPGSILHFEGM--HPTLGVDIILNGAKVGRGNIIALQDV-- 365

Query: 135 HFGVRVIEI 143
             G+RV+E+
Sbjct: 366 -LGIRVLEV 373


>gi|167615480|ref|ZP_02384115.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia thailandensis Bt4]
          Length = 205

 Score = 48.7 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIMNIPVKM 79
           D+P  D+   SP +     +  +   + ++P +  S +    +         + ++ + +
Sbjct: 78  DSPA-DSRGDSPADPLADSLADSPAGSPADPQADSSLDSSSDAPCCAPEPADLGDVELPV 136

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
            + L +  + I+ L  L  G V+ L        V +    Q I  G +  +     H GV
Sbjct: 137 HVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVAVG---AHLGV 193

Query: 139 RV 140
           R+
Sbjct: 194 RI 195


>gi|167577332|ref|ZP_02370206.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia thailandensis TXDOH]
          Length = 226

 Score = 48.7 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIMNIPVKM 79
           D+P  D+   SP +     +  +   + ++P +  S +    +         + ++ + +
Sbjct: 99  DSPA-DSRGDSPADPLADSLADSPAGSPADPQADSSLDSSSDAPCCAPEPADLGDVELPV 157

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
            + L +  + I+ L  L  G V+ L        V +    Q I  G +  +     H GV
Sbjct: 158 HVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVAVG---AHLGV 214

Query: 139 RV 140
           R+
Sbjct: 215 RI 216


>gi|167574751|ref|ZP_02367625.1| RhcQ protein [Burkholderia oklahomensis C6786]
          Length = 104

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 51  SEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           S    SD     ++ + N      L+ +IP+ +  ++G     +  L +++ GDV+ L +
Sbjct: 7   SAQSQSDEPRFEQEPSRNGKADPSLLDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGR 66

Query: 107 RVGESVDITINNQKIAKGEITIME 130
                V I  +   I  GE   + 
Sbjct: 67  NPHGQVSIEAHGVTIGYGEFVEIG 90


>gi|168235931|ref|ZP_02660989.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738216|ref|YP_002115843.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194713718|gb|ACF92939.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197290676|gb|EDY30030.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 303

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
           98-5489]
 gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
           98-5489]
          Length = 352

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 34/64 (53%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++++   ++ +   L+    V +  +LG   + +  ++ L  GD++ LD+   ++V I 
Sbjct: 239 SETSSKKSRNKELQALLGGAKVNVTAMLGETKLTLREILELESGDIVRLDRPADDTVIIN 298

Query: 116 INNQ 119
           ++ +
Sbjct: 299 VDGR 302


>gi|204928363|ref|ZP_03219563.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204322685|gb|EDZ07882.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|322614291|gb|EFY11222.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621645|gb|EFY18498.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624506|gb|EFY21339.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628837|gb|EFY25620.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633436|gb|EFY30178.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635988|gb|EFY32696.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639696|gb|EFY36381.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646879|gb|EFY43382.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650647|gb|EFY47052.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654740|gb|EFY51059.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658961|gb|EFY55214.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664472|gb|EFY60666.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668279|gb|EFY64436.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673741|gb|EFY69842.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677802|gb|EFY73865.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681368|gb|EFY77400.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683770|gb|EFY79780.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323193841|gb|EFZ79044.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200311|gb|EFZ85393.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203186|gb|EFZ88215.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205567|gb|EFZ90532.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210078|gb|EFZ94981.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216381|gb|EGA01108.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221128|gb|EGA05559.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226950|gb|EGA11132.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230766|gb|EGA14884.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234883|gb|EGA18969.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238922|gb|EGA22972.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241622|gb|EGA25653.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248231|gb|EGA32167.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251185|gb|EGA35058.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256069|gb|EGA39807.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263204|gb|EGA46742.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264293|gb|EGA47799.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271119|gb|EGA54547.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 303

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|319795615|ref|YP_004157255.1| type III secretion system apparatus protein yscq/hrcq [Variovorax
           paradoxus EPS]
 gi|315598078|gb|ADU39144.1| type III secretion system apparatus protein YscQ/HrcQ [Variovorax
           paradoxus EPS]
          Length = 379

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94
              S + IQ++    + +  ++        ++   D +  + V ++  +G   + +  L 
Sbjct: 268 AEGSRITIQQSLHSAMKQDPAAPIAAAESGASLPIDRLDALEVMLRFEVGDIELSLGELK 327

Query: 95  NLSKGDVITLDKRVG-ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            L  G V  L + +    + I  +   + KG +  + +     GVRV E    +
Sbjct: 328 ALRPGHVFDLGQPLNRSPIRILAHGNVLGKGYLVAVGD---RLGVRVSEFAPGE 378


>gi|86157133|ref|YP_463918.1| surface presentation of antigens (SPOA) protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773644|gb|ABC80481.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 324

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D      + T+  +    +PV +++ L    + ++ +  L  G V+ L+      V + +
Sbjct: 237 DGEGFHVEETEMIERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRL 296

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143
             + +A+GE+    + +   GVR++ +
Sbjct: 297 GERAVARGELV---DVEGAVGVRILSL 320


>gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
 gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
          Length = 323

 Score = 48.3 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           ++N+ V +Q+ LG   + + +L+NL  GD + LD +V + +D+ I  ++   G   +   
Sbjct: 252 VLNVMVNLQVCLGHMHIPLRDLINLRVGDTLLLDTKVDKPLDVKIEKKQKFLG---VPGR 308

Query: 132 DDTHFGVRVIEIL 144
              +  +++ E+L
Sbjct: 309 VGKNLAIKITEVL 321


>gi|126442929|ref|YP_001062994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
 gi|126222420|gb|ABN85925.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
          Length = 359

 Score = 48.3 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE +   S      +TD    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 259 SMSEEVDQASAGFGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + + ++ Q +  GE+  + E   H GVR+I
Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349


>gi|89111158|dbj|BAE80248.1| HrcQ [Acidovorax avenae subsp. avenae]
          Length = 309

 Score = 48.3 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 14  NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
           +L+   + +    Q    +   + S      +    I E   S++             I 
Sbjct: 169 DLDDSEIALHAAPQADAFADLDDGSGEPASASAGAEIPEDAGSEAAPPATPLP--LADIG 226

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEED 132
            I V + I + +  +++  L  L  G V+ L     ++ V +  + Q +  G + ++ E 
Sbjct: 227 GIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVVIGE- 285

Query: 133 DTHFGVRV 140
             + GVR+
Sbjct: 286 --NLGVRI 291


>gi|39545586|gb|AAR27893.1| AscQ [Aeromonas hydrophila]
          Length = 307

 Score = 48.3 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 57  DSNNILEKSTDNFDL--IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           +   +   + DN D   + N+P+++   +G   +   +L  L  G +I L   +   V I
Sbjct: 216 ELTAMHNAADDNLDATQLDNLPIQVTFEVGRQTLDWHSLTTLQPGSLIDLGTPIDGEVRI 275

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRV 140
             N  ++  G +    E     GVRV
Sbjct: 276 ISNGHQLGSGRLV---EIQGRLGVRV 298


>gi|253988530|ref|YP_003039886.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211637888|emb|CAR66517.1| type iii secretion component protein sctq [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779980|emb|CAQ83141.1| type iii secretion component protein sctq [Photorhabdus
           asymbiotica]
          Length = 309

 Score = 48.3 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +SSDS N      D    + ++ + +   +G   + +  L +L  G ++ L       V 
Sbjct: 221 LSSDSPNSTSPVPD----LNSLEIHVSFEVGRQTLDLHTLTSLQPGSLLDLGVPPDGEVR 276

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRV 140
           I +N + +  G +    +     GVRV
Sbjct: 277 ILVNQKCLGSGRLV---DIQGRLGVRV 300


>gi|326624622|gb|EGE30967.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 261

 Score = 48.3 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 170 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 229

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 230 NGVLLGNGELVQMNDT---LGVEIHEWLSE 256


>gi|317407760|gb|EFV87687.1| YscQ/HrcQ family type III secretion apparatus protein
           [Achromobacter xylosoxidans C54]
          Length = 396

 Score = 48.3 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85
           + D +   P+       Q  +          D+   ++    + D    +PV++   LG 
Sbjct: 278 VSDEDGVFPSGAGGAGAQGFEARP-PREAGEDAGADVDGLEPSVDF-GQVPVRLGFDLGE 335

Query: 86  CCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
             + +  L  L+ G+V  LD+ V +  V I  N  ++  GE+  +E    + GVR+  +
Sbjct: 336 RLITLDRLRTLALGEVFELDRPVADGCVRIRANGMEVGLGELVEVE---GNIGVRLKSL 391



 Score = 34.8 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 24/33 (72%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           +PV+M+  +G+  + ++ L +L++GDV+ LD+ 
Sbjct: 202 LPVRMRAEVGASTLSLAELRSLAEGDVVFLDEH 234


>gi|167004217|ref|ZP_02269984.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
 gi|243060412|gb|EES42598.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
          Length = 331

 Score = 48.3 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNILEKSTDNFDLIMN 74
           EG ++ ++ PL D+ + +  + S         D    EP ++ +         + D +  
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDTSHDEPTAAHAPPAF-----DIDAL-- 256

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
            PV ++ +L    + +  L     G V+ L    GE V I  N +   +GE+  + E 
Sbjct: 257 -PVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 312


>gi|217425190|ref|ZP_03456685.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
 gi|217391795|gb|EEC31822.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
          Length = 323

 Score = 48.3 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S            + P              + D +   
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 248

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N +   +GE+  + E 
Sbjct: 249 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 304


>gi|153940240|ref|YP_001392022.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
           Langeland]
 gi|170756595|ref|YP_001782350.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
           Okra]
 gi|152936136|gb|ABS41634.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
           Langeland]
 gi|169121807|gb|ACA45643.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
           Okra]
 gi|295320037|gb|ADG00415.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
           230613]
          Length = 331

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
             +D  +I + S+   + I  + +++   LG   + +   + L+ GDV+ L+ +  E V 
Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVALETKTEEPVH 295

Query: 114 ITI 116
           + I
Sbjct: 296 LLI 298


>gi|16761668|ref|NP_457285.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143152|ref|NP_806494.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052435|ref|ZP_03345313.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213419312|ref|ZP_03352378.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213425707|ref|ZP_03358457.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580301|ref|ZP_03362127.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213649909|ref|ZP_03379962.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213853009|ref|ZP_03382541.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289829393|ref|ZP_06547005.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|2494557|sp|Q56022|SPAO_SALTI RecName: Full=Surface presentation of antigens protein SpaO
 gi|25354379|pir||AG0851 surface presentation of antigens protein (associated with type III
           secretion and virulence) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|975770|gb|AAC43860.1| SpaO [Salmonella enterica subsp. enterica serovar Typhi]
 gi|16503969|emb|CAD05998.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138785|gb|AAO70354.1| antigen presentation protein SpaO [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|32454373|gb|AAP82988.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454375|gb|AAP82989.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454383|gb|AAP82993.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 303

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L   V  +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
           Ice1]
 gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
           Ice1]
          Length = 331

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
            S      +   LE   +  +  +   V + ++LG   + +S L++L  GDVI LD R  
Sbjct: 234 FSNAAKERTTEQLEALRNRLERAL---VPITVLLGRTTLSVSELLDLQLGDVIQLDNRAD 290

Query: 110 ESVDITINNQK--IAKGEITIMEEDDTHFGVRVI 141
             +++ I  +   +A+          +  G+++ 
Sbjct: 291 SELEVLIGQRVKYLAR-----PGLSGSKLGIQIT 319


>gi|283836562|ref|ZP_06356303.1| putative surface presentation of antigens protein [Citrobacter
           youngae ATCC 29220]
 gi|291067491|gb|EFE05600.1| putative surface presentation of antigens protein [Citrobacter
           youngae ATCC 29220]
          Length = 250

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 53  PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            I  +  + + +S    + + ++ + +   +G   +  + L +L  GDV+T D  +   V
Sbjct: 160 EIEQNVEDHIVQSHSPLNSLGDVRITLTFEVGCTSLTFAELASLKVGDVLTADVLLNNCV 219

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRV 140
            +  N    A G + ++ +      VR+
Sbjct: 220 KLRANGSVFASGNLLMLGDTP---AVRI 244


>gi|168180850|ref|ZP_02615514.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
           2916]
 gi|182668347|gb|EDT80326.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
           2916]
          Length = 331

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
             +D  +I + S+   + I  + +++   LG   + +   + L+ GDV+ L+ R  E V 
Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVALETRTEEPVH 295

Query: 114 ITI 116
           + I
Sbjct: 296 LLI 298


>gi|220913720|ref|YP_002489029.1| surface presentation of antigens (SPOA) protein [Arthrobacter
           chlorophenolicus A6]
 gi|219860598|gb|ACL40940.1| surface presentation of antigens (SPOA) protein [Arthrobacter
           chlorophenolicus A6]
          Length = 298

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           +  +PV + + L    +  + ++ L+ GDV+ L        D+T+N  ++A
Sbjct: 225 VAQVPVDVAVQLARTSVTPAQILGLAVGDVLPLPHPENSPFDVTVNGTRLA 275


>gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
 gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
          Length = 348

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           + +  I V+++ ++G   +++S ++ L  GDVI L++RV + V + I  ++  +    I 
Sbjct: 259 EQLEKIEVELRAVMGRTRIKLSEMMTLEVGDVIVLERRVNQPVQVYIGEREKFRA---IP 315

Query: 130 EEDDTHFGVRVIEIL 144
                H  +R++E++
Sbjct: 316 GRSGKHRALRILEVV 330


>gi|226195953|ref|ZP_03791539.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
 gi|225931846|gb|EEH27847.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
          Length = 327

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S         D   EP ++ +         + D +   
Sbjct: 204 EGENIMLNEPLADSAIDALHDASRDTSHDTSHD---EPTAAHAPPAF-----DIDAL--- 252

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 253 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 308


>gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
 gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
          Length = 315

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E S      +  IP+ +++ILG   +Q+ +L+N+  GD + L K + E V++ ++    A
Sbjct: 237 EVSNKLLQALEEIPLNLEVILGRQKIQLGDLLNMKVGDTMILQKGLREPVEVRVSGVPKA 296


>gi|254973937|ref|ZP_05270409.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-66c26]
 gi|255091323|ref|ZP_05320801.1| putative flagellar motor switch protein [Clostridium difficile CIP
           107932]
 gi|255312981|ref|ZP_05354564.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-76w55]
 gi|255515740|ref|ZP_05383416.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-97b34]
 gi|255648834|ref|ZP_05395736.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-37x79]
 gi|260682051|ref|YP_003213336.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260685649|ref|YP_003216782.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
 gi|306518949|ref|ZP_07405296.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-32g58]
 gi|260208214|emb|CBA60573.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260211665|emb|CBE01935.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
          Length = 293

 Score = 47.9 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 46  DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +  ++ E   +D  +  E+ T    + + NI + +   +G   + + +L+ L  GDVI  
Sbjct: 193 ESISVIEFFDNDVGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252

Query: 105 DKRVGESVDITINN 118
           +K++ + +DI + N
Sbjct: 253 NKKINDYIDIFVEN 266


>gi|167828748|ref|ZP_02460219.1| type III secretion system protein BsaV [Burkholderia pseudomallei
           9]
          Length = 294

 Score = 47.9 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S         D   EP ++ +         + D +   
Sbjct: 171 EGENIMLNEPLADSAIDALHDASRDTSHDTSHD---EPTAAHAPPAF-----DIDAL--- 219

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 220 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 275


>gi|167030913|gb|ABZ05781.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 389

 Score = 47.9 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 27/143 (18%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           ++  ++   ++E  SM    P  DT ++ P +++  L    + DN++E +          
Sbjct: 253 LAPYTFTVTDMETVSM----PATDTMLADPHSDASALEFTPESDNVTENLPP-------- 300

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQKIAK 123
                     +PV + I  GS  M ++ L +L+ G V+TL D   G+++ +   +  +A 
Sbjct: 301 ----------LPVTLHIRCGSLTMTLAELQHLASGSVLTLRDVVPGQAL-LYHGDIALAS 349

Query: 124 GEITIMEEDDTHFGVRVIEILNA 146
           G++    +     G+++ +  +A
Sbjct: 350 GDLV---DVKGRLGLQITQCFSA 369


>gi|94968672|ref|YP_590720.1| surface presentation of antigens (SPOA) protein [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550722|gb|ABF40646.1| surface presentation of antigens (SPOA) protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 109

 Score = 47.9 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
            S +    +  ++  +   ++   + + L      +  ++ L  G V+         + +
Sbjct: 23  ESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLELRPGAVVDTCWSQATDLPL 82

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +N   +A  E  +++     +GVR+ E+
Sbjct: 83  RVNGALLAWSEFEVVD---NRYGVRLTEL 108


>gi|167743202|ref|ZP_02415976.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 14]
          Length = 213

 Score = 47.9 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD---NISEPISSDSNNILEKSTD-NFDL 71
           EG ++ ++ PL D+ + +  + S         D   + S   S D           + D 
Sbjct: 78  EGENIMLNEPLADSAIDALHDASHDASHDASHDTSHDTSHDTSHDEPTAAHAPPAFDIDA 137

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +   PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E
Sbjct: 138 L---PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 193

Query: 132 D 132
            
Sbjct: 194 Q 194


>gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
 gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
 gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 332

 Score = 47.9 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 56  SDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           +D  ++  +S +  +  I  + V +   LG   + + + + L+ GDVI LD R    + +
Sbjct: 237 NDDESLKAESREKIEEGIHKVDVDVIAELGKTSLTVEDFLKLNVGDVIKLDTRSSSPIKV 296

Query: 115 TINN 118
            + N
Sbjct: 297 YVGN 300


>gi|220915858|ref|YP_002491162.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953712|gb|ACL64096.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 324

 Score = 47.9 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV +++ L    + ++ +  L  G V+ L+      V + +  + IA+GE+    + +
Sbjct: 254 QLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAIARGELV---DVE 310

Query: 134 THFGVRVIEI 143
              GVR++ +
Sbjct: 311 GAVGVRILSL 320


>gi|168183192|ref|ZP_02617856.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
 gi|237796179|ref|YP_002863731.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
           657]
 gi|182673661|gb|EDT85622.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
 gi|229262117|gb|ACQ53150.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
           657]
          Length = 331

 Score = 47.9 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
             +D  +I + S+   + I  + +++   LG   + +   + L+ GDV++L+ R  E V 
Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVSLETRTEEPVH 295

Query: 114 ITI 116
           + I
Sbjct: 296 LLI 298


>gi|326315334|ref|YP_004233006.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372170|gb|ADX44439.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 373

 Score = 47.9 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDN-----------ISEPISSDSNNILEKS 65
           G +MHI   L   +     + +       D+D+              P  + S   L  +
Sbjct: 223 GTTMHIPAELDLDDSEIALHAAPQADAFADLDDGSAEPAPASAAAEIPEDAGSEAALPAT 282

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKG 124
                 I +I V + I + +  +++  L  L  G V+ L     ++ V +  + Q +  G
Sbjct: 283 PLPLADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTG 342

Query: 125 EITIMEEDDTHFGVRV 140
            + ++ E     GVR+
Sbjct: 343 RLVVIGES---LGVRI 355


>gi|255099440|ref|ZP_05328417.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-63q42]
          Length = 293

 Score = 47.9 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 46  DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +  ++ E   +D  +  E+ T    + + NI + +   +G   + + +L+ L  GDVI  
Sbjct: 193 ESISVIEFFDNDIGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252

Query: 105 DKRVGESVDITINN 118
           +K++ + +DI + N
Sbjct: 253 NKKINDYIDIFVEN 266


>gi|323530324|ref|YP_004232476.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. CCGE1001]
 gi|323387326|gb|ADX59416.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. CCGE1001]
          Length = 454

 Score = 47.9 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSK 98
            L ++  + +  +P+  D     ++ ++  D+  +++PV+    + +  + +S L  L  
Sbjct: 346 SLTKEPIMTDELDPVRPDDLLAPDQQSNPIDIGELDLPVQF--EVDTVALPLSQLYALRP 403

Query: 99  GDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDTHFGVRV 140
           G V+ L   V E+ + +  + Q I  GE+  + +   H G+R+
Sbjct: 404 GYVLELPTPVAEAQLKLVTHGQTIGYGELVTVGD---HLGIRI 443


>gi|975766|gb|AAC43857.1| SpaO [Salmonella enterica subsp. enterica serovar Typhisuis]
          Length = 303

 Score = 47.9 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEVMGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|150388448|ref|YP_001318497.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
 gi|149948310|gb|ABR46838.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
          Length = 331

 Score = 47.9 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
             N S+P++      L+K  +         V +   LGS C+ + + + L  GDVI LD 
Sbjct: 235 FSNSSKPVTERDKKALQKRVEKSA------VDITAQLGSTCVTVKDFLELQMGDVIMLDN 288

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            V + + I + ++   +G   +         V+V  I
Sbjct: 289 PVDKELQILVGDKIRYRG---LPGTSKNKLAVKVTGI 322


>gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
 gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
          Length = 329

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
             ++  N  + S +     +MN  V++  +LG   +   +L++L  GD + LD+   E +
Sbjct: 236 QEANRRNASQSSKEPLKAQLMNSTVEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEPL 295

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + +   K+ KG++ +         V+V+  +  +
Sbjct: 296 SVMVGENKVFKGQVGV---SGKRMAVQVLHRVKEE 327


>gi|255305298|ref|ZP_05349470.1| putative flagellar motor switch protein [Clostridium difficile ATCC
           43255]
          Length = 293

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 46  DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +  ++ E   +D  +  E+ T    + + NI + +   +G   + + +L+ L  GDVI  
Sbjct: 193 ESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252

Query: 105 DKRVGESVDITINN 118
           +K++ + +DI + N
Sbjct: 253 NKKINDYIDIFVEN 266


>gi|187778682|ref|ZP_02995155.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
           15579]
 gi|187772307|gb|EDU36109.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
           15579]
          Length = 331

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           + +++   LG   + + + + LS GDV+ LD +  E V + I
Sbjct: 257 VSMELTAELGRTSVTVEDFLRLSVGDVVALDTKTEEPVHLLI 298


>gi|126697842|ref|YP_001086739.1| putative flagellar motor switch protein [Clostridium difficile 630]
 gi|115249279|emb|CAJ67092.1| Flagellar motor switch protein FliM [Clostridium difficile]
          Length = 293

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 46  DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +  ++ E   +D  +  E+ T    + + NI + +   +G   + + +L+ L  GDVI  
Sbjct: 193 ESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252

Query: 105 DKRVGESVDITINN 118
           +K++ + +DI + N
Sbjct: 253 NKKINDYIDIFVEN 266


>gi|221640809|ref|YP_002527071.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides KD131]
 gi|221161590|gb|ACM02570.1| Surface presentation of antigens (SPOA) protein precursor
           [Rhodobacter sphaeroides KD131]
          Length = 51

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147
           ++ LD+RV + V++ + ++ I +GE+T +E E      VR+ E+ N +
Sbjct: 1   MLPLDRRVDDPVELYVGDRLIGRGELTELEGEQAGQLAVRLTEVANLR 48


>gi|71388160|gb|AAZ31294.1| EpaO [Escherichia coli]
          Length = 315

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +     L    +I+L     ++++I 
Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYETDELCAKRIISLLPESEKNIEIR 282

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304


>gi|237510407|ref|ZP_04523122.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
 gi|235002612|gb|EEP52036.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
          Length = 319

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
            +  + +D + +    +          + D +   PV ++ +L    + ++ L     G 
Sbjct: 213 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 269

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
           V+ L    GE V I  N +   +GE+  + E 
Sbjct: 270 VLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 300


>gi|206603652|gb|EDZ40132.1| Flagellar motor switch protein FliM) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 338

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAK 123
           P++++  +G     + +++    GDV +LD+ V E V++ +    + +A+
Sbjct: 258 PLEIEAFIGEARFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLAR 307


>gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
 gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
          Length = 331

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
             NIS+P++      L+K  +         V +   LG  C+ + + + L  GDVI LD 
Sbjct: 235 FSNISKPVTESDKKALQKRVEKST------VNITAQLGGTCVTVKDFLELQIGDVIMLDN 288

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            V + + I + ++   +G   +         V+V  I
Sbjct: 289 PVNKELQILVGDKIRYRG---LPGTSKNKLAVKVTGI 322


>gi|212639555|ref|YP_002316075.1| flagellar motor switch protein FliM [Anoxybacillus flavithermus
           WK1]
 gi|212561035|gb|ACJ34090.1| Flagellar motor switch protein FliM [Anoxybacillus flavithermus
           WK1]
          Length = 335

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIM 129
           +    V M   LG+  + I   + LS GDVI LD+ V + + I + +  + I +      
Sbjct: 258 LKQTKVPMIAELGTSTISIQEFLQLSVGDVIQLDQTVRDPLVIKVGDVPKFIGQ-----P 312

Query: 130 EEDDTHFGVRVIEILNAQ 147
            + +    +++++++  +
Sbjct: 313 GKMNKRLAIQILDVIKGE 330


>gi|120609153|ref|YP_968831.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
           citrulli AAC00-1]
 gi|120587617|gb|ABM31057.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
           citrulli AAC00-1]
 gi|255047056|gb|AAW81013.2| HrcQ [Acidovorax citrulli]
          Length = 352

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 14  NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
           +L+   + +    Q    + P +           +  +    SD+    E +      I 
Sbjct: 213 DLDDSEIALHAAPQADAFAEPADEDGAPDPAGAAEEAAPCSGSDAEP--EATPLPLTDIG 270

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEED 132
            I V + I + +  +++  L  L  G ++ L     ++ V +  + Q +  G + ++ + 
Sbjct: 271 GIRVPVAIEIDTARIRLDELAALDAGAIVPLAVAARDATVRLVCHGQVVGTGRLVVIGD- 329

Query: 133 DTHFGVRV 140
             H GVR+
Sbjct: 330 --HLGVRI 335


>gi|15803390|ref|NP_289423.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 EDL933]
 gi|15832980|ref|NP_311753.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. Sakai]
 gi|195936472|ref|ZP_03081854.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. EC4024]
 gi|217327510|ref|ZP_03443593.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7
           str. TW14588]
 gi|254794807|ref|YP_003079644.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. TW14359]
 gi|261226167|ref|ZP_05940448.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256579|ref|ZP_05949112.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12517368|gb|AAG57982.1|AE005515_4 typeIII secretion apparatus protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13363198|dbj|BAB37149.1| type III secretion protein EpaO [Escherichia coli O157:H7 str.
           Sakai]
 gi|217319877|gb|EEC28302.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7
           str. TW14588]
 gi|254594207|gb|ACT73568.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|320189200|gb|EFW63859.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. EC1212]
 gi|326339059|gb|EGD62874.1| surface presentation of antigens protein SpaO [Escherichia coli
           O157:H7 str. 1044]
          Length = 328

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 31  VSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
                  ++    + D + +  +   S+S    E      +    +PVK++ +LG   M 
Sbjct: 210 YPEELKMADHFQYEEDFETDDFDIKKSESEIYDENDEQMINSFEELPVKIEFVLGKKIMN 269

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           +  +  L    +I+L     ++++I +N      GE+  +++     GV +
Sbjct: 270 LYEIDELCAKRIISLLPESEKNIEIRVNGALTGYGELVEVDD---KLGVEI 317


>gi|53716455|ref|YP_106127.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           23344]
 gi|67641438|ref|ZP_00440217.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia mallei GB8 horse 4]
 gi|254176163|ref|ZP_04882821.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           10399]
 gi|254200993|ref|ZP_04907358.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
 gi|254204957|ref|ZP_04911310.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
 gi|52422425|gb|AAU45995.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           23344]
 gi|147748605|gb|EDK55680.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
 gi|147754543|gb|EDK61607.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
 gi|160697205|gb|EDP87175.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           10399]
 gi|238522378|gb|EEP85823.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia mallei GB8 horse 4]
          Length = 327

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 12/117 (10%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S         D   EP ++ +         + D +   
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDTSHD---EPTAAHAPPAF-----DIDAL--- 252

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + +  L     G V+ L    GE V I  N +   +GE+  + E 
Sbjct: 253 PVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 308


>gi|323186702|gb|EFZ72024.1| flagellar motor switch protein fliN domain protein [Escherichia
           coli RN587/1]
          Length = 39

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I IN   IA+GE+ ++ +    +GVR+ +I+  
Sbjct: 1   ILINGYLIAQGEVVVVAD---KYGVRITDIITP 30


>gi|332669206|ref|YP_004452214.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
 gi|332338244|gb|AEE44827.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
          Length = 309

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 51  SEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           ++  S +   +   +    +  + ++PV + +      +   ++VNL+ GDV+ L     
Sbjct: 214 ADARSEEERQVARIAHAELERAVQDVPVHVAVQFRPVTVHPRDVVNLTVGDVLPLSHPSS 273

Query: 110 ESVDITINNQKIAKG-----------EITIMEEDDT 134
           E +D+ ++   +A+            ++  +EE+  
Sbjct: 274 EPLDVVVDGIVLARAAAGSHGSRLACQVVTVEENPA 309


>gi|197121157|ref|YP_002133108.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. K]
 gi|196171006|gb|ACG71979.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. K]
          Length = 324

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
            +PV +++ L    + ++ +  L  G V+ L+      V + +  + +A+GE+    + +
Sbjct: 254 QLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAVARGELV---DVE 310

Query: 134 THFGVRVIEI 143
              GVR++ +
Sbjct: 311 GAVGVRILSL 320


>gi|150019115|ref|YP_001311369.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
           8052]
 gi|149905580|gb|ABR36413.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
           8052]
          Length = 332

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
           + L+ +    N +E   ++S   LEK  +  D      V++   LG+  + + + + L+ 
Sbjct: 227 DKLVVQYAFKNDNEASMAESREKLEKGINKVD------VEIVAELGTANITVDDFLKLTV 280

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           GDVI LD +    + + + N++    +  ++ ++    GV +++I + +
Sbjct: 281 GDVIKLDNKSSSPIKVYVGNEECYYAKPGVVGKNA---GVMILDITDKE 326


>gi|332799187|ref|YP_004460686.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
 gi|332696922|gb|AEE91379.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
          Length = 331

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           + + +   +++  LG   + +   +NL+ GDVI L+K + +  DI I ++ 
Sbjct: 252 EKVYDTKTEIRAELGRTLITVGEFINLATGDVIALNKNIKDGADIFIKDKL 302


>gi|51103201|gb|AAT96342.1| HrcQ-like protein [Pseudomonas viridiflava]
          Length = 354

 Score = 47.2 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            +D+I E  S+   +  E + ++     ++ + + +  G+  + +  L +L+ G V+T +
Sbjct: 256 HLDDIDEHDSAHEADSAEANDNDLQRFNDLSMALTVRAGNLSLSLGQLRSLAVGSVLTFN 315

Query: 106 K-RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
               G ++ +    + +A GE+    + +   G+++ 
Sbjct: 316 GCTPGHAM-LHHGERVLAHGELV---DVEGRLGLQIT 348


>gi|50121008|ref|YP_050175.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560423|gb|AAS20383.1| HrcQ [Pectobacterium atrosepticum]
 gi|49611534|emb|CAG74982.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 405

 Score = 47.2 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 12/115 (10%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
             VS P   +++++   + D  +   + DS+N+ E           +P+ + I  GS  M
Sbjct: 278 ETVSMPATATDIMLADPNSDTSAFEFTLDSDNVTESLPP-------LPITLHIRCGSLTM 330

Query: 89  QISNLVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            ++ L +L+ G V+TL D   G++  +   +  +A G++    + +   G+++ +
Sbjct: 331 TLAELQHLASGSVLTLRDVVPGQA-WLYHGDIALASGDLV---DVEGRLGLQITQ 381


>gi|16078694|ref|NP_389513.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309509|ref|ZP_03591356.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313833|ref|ZP_03595638.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318756|ref|ZP_03600050.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323028|ref|ZP_03604322.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296330846|ref|ZP_06873321.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674364|ref|YP_003866036.1| flagellar motor switching and energizing protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|321315398|ref|YP_004207685.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
 gi|120344|sp|P23453|FLIM_BACSU RecName: Full=Flagellar motor switch protein FliM
 gi|142922|gb|AAA22446.1| flagellar switch protein [Bacillus subtilis]
 gi|2634003|emb|CAB13504.1| flagellar motor switching and energizing component [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291484184|dbj|BAI85259.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. natto
           BEST195]
 gi|296151851|gb|EFG92725.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412608|gb|ADM37727.1| flagellar motor switching and energizing component [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320021672|gb|ADV96658.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
          Length = 332

 Score = 47.2 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + SD N    + T + +  IM   + +   LG+  + I   ++L  GD ITLDK V + +
Sbjct: 236 MQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPL 295

Query: 113 DITINNQK 120
            + + ++ 
Sbjct: 296 TVLVGDKP 303


>gi|170288054|ref|YP_001738292.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
 gi|170175557|gb|ACB08609.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
          Length = 328

 Score = 47.2 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV +Q ++G   +++  +++L  GDVI L     + + I +  +   +G   I      
Sbjct: 255 IPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGTFKG 311

Query: 135 HFGVRVI 141
            + V+V 
Sbjct: 312 KYAVKVT 318


>gi|89895728|ref|YP_519215.1| hypothetical protein DSY2982 [Desulfitobacterium hafniense Y51]
 gi|89335176|dbj|BAE84771.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 338

 Score = 47.2 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V M  +LG   + + +L+ L+ GDVI L + V E++ + + N +  KG   I      H
Sbjct: 265 KVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEALPVYVGNFRKFKG---IPGLHGEH 321

Query: 136 FGVRVIEILNA 146
             V++ EI+  
Sbjct: 322 LAVQITEIVEE 332


>gi|126443367|ref|YP_001063162.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
 gi|126222858|gb|ABN86363.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
          Length = 323

 Score = 47.2 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S            + P              + D +   
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 248

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 249 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 304


>gi|53722559|ref|YP_111544.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|126458287|ref|YP_001076113.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|242311185|ref|ZP_04810202.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
 gi|254186857|ref|ZP_04893373.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|52212973|emb|CAH39011.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|126232055|gb|ABN95468.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|157934541|gb|EDO90211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|242134424|gb|EES20827.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
          Length = 323

 Score = 47.2 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S            + P              + D +   
Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 248

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 249 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 304


>gi|219670152|ref|YP_002460587.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
           DCB-2]
 gi|219540412|gb|ACL22151.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
           DCB-2]
          Length = 331

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V M  +LG   + + +L+ L+ GDVI L + V E++ + + N +  KG   I      H
Sbjct: 258 KVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEALPVYVGNFRKFKG---IPGLHGEH 314

Query: 136 FGVRVIEILNA 146
             V++ EI+  
Sbjct: 315 LAVQITEIVEE 325


>gi|110632471|ref|YP_672679.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp.
           BNC1]
 gi|110283455|gb|ABG61514.1| surface presentation of antigens (SPOA) protein [Chelativorans sp.
           BNC1]
          Length = 354

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D I ++PV++  +  +  + +  L  L  G  + L+  +   V I  N     +G +  +
Sbjct: 275 DPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDLTRPVTILANGAPAGRGYLVQI 334

Query: 130 EEDDTHFGVRVI 141
            +   H GV++ 
Sbjct: 335 GD---HMGVQLS 343


>gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum
           ferrodiazotrophum]
          Length = 341

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           +P+K+   LG+   ++S ++    GD+ITLD+ V + + IT+    
Sbjct: 259 VPIKIVAELGTTKARLSEVLAWKPGDMITLDQYVDDPIKITVEKAL 304


>gi|59712452|ref|YP_205228.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
 gi|197335836|ref|YP_002156671.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
 gi|59480553|gb|AAW86340.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
 gi|197317326|gb|ACH66773.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
          Length = 344

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S    D IM++PV+M
Sbjct: 204 IEVDGGGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVEM 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L+ L  GD+I ++    E+  + + +    +G++    + +    ++
Sbjct: 260 KVNLLESQISLRDLMELEAGDIIPVEMP--EAATVFVEDLPTYRGKV---GQSNDKLAIQ 314

Query: 140 VIEILN 145
           + E + 
Sbjct: 315 ITEKIK 320


>gi|167577438|ref|ZP_02370312.1| type III secretion system protein BsaV [Burkholderia thailandensis
           TXDOH]
          Length = 320

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
           E L +    D+   P ++ +         + D +   PV ++ +L    + ++ L     
Sbjct: 212 EPLAEHAIDDSHDSPATAGAAPDASPPAFDIDAL---PVTLEFVLQDERVTVAQLARCHP 268

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           G V+ L    GE V I  N Q    GE+  + + 
Sbjct: 269 GLVLPLRGVPGE-VTIRANGQPFGIGELIQVGDQ 301


>gi|167566299|ref|ZP_02359215.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia oklahomensis EO147]
          Length = 144

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
           + ++ + + + + +  + I+ L  L  G V+ L     +  V +    Q I  GE+  + 
Sbjct: 68  LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 127

Query: 131 EDDTHFGVRVI 141
               H GVR+ 
Sbjct: 128 ---AHLGVRIN 135


>gi|973293|gb|AAC43956.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|24496480|gb|AAN60221.1| FliM [Fervidobacterium sp. YNP]
          Length = 165

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 59  NNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
             I E+  +   + +    + +  I+G   + +  ++ L  GDVI L +   E + + +N
Sbjct: 74  KEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVIRLKEHYDEPIRVEVN 133

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            +    G+     +   ++ V++ E++  
Sbjct: 134 GRTKFLGK---PGQYKGNYAVKITEVIEE 159


>gi|975762|gb|AAC43851.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|326794363|ref|YP_004312183.1| surface presentation of antigens (SPOA) protein [Marinomonas
           mediterranea MMB-1]
 gi|326545127|gb|ADZ90347.1| surface presentation of antigens (SPOA) protein [Marinomonas
           mediterranea MMB-1]
          Length = 142

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81
           +D PL+D+  +S  N    +   +D  + SEP  S    IL+K         + P+++ +
Sbjct: 12  LDAPLEDSMTASADNIQHNVSDASDHQSESEPAPS---TILKKYP-------DAPLELTL 61

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
             G        L  L+ G V+           +    Q IA+GE+  +E      G+++ 
Sbjct: 62  NAGRISASFDELSQLNIGSVLVATGEKAGYATMYHQQQAIARGELVNVE---GRLGIQIT 118

Query: 142 EI 143
            +
Sbjct: 119 HV 120


>gi|34498080|ref|NP_902295.1| surface presentation of antigens protein SpaO [Chromobacterium
           violaceum ATCC 12472]
 gi|34103935|gb|AAQ60295.1| surface presentation of antigens; secretory proteins
           [Chromobacterium violaceum ATCC 12472]
          Length = 296

 Score = 47.2 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           +     +   + D +   PV+++ +L    + +  L  L + +V+ L       V++  N
Sbjct: 209 AAAAETRPLADLDRL---PVRLEFVLQQSEVTLDELRELCRSNVLPLSADAERRVELRAN 265

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIE 142
              + +GE+    + D   GV V +
Sbjct: 266 GALLGRGELV---QLDGRLGVEVAQ 287


>gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 342

 Score = 47.2 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
            + +  + V + + +G   + + +++ L  GDVI L++   E V + +  + 
Sbjct: 252 IERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVIKLEETYSEPVKVRVGERV 303


>gi|218988951|gb|ACL13614.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. salamae serovar Sofia]
          Length = 303

 Score = 47.2 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|89111191|dbj|BAE80280.1| HrcQ [Acidovorax avenae subsp. avenae]
          Length = 309

 Score = 46.8 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISE-----------PISSDSNNILEKS 65
           G +MHI   L   +     + +       D+D+              P  + S   L  +
Sbjct: 159 GTTMHIPAELDLDDSEIALHAAPQADAFADLDDGGAGPAPASAAAEIPEDACSEAALPAT 218

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKG 124
                 I +I V + I + +  +++  L  L  G V+ L     ++ V +  + Q +  G
Sbjct: 219 PLPLADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTG 278

Query: 125 EITIMEEDDTHFGVRV 140
            + ++ E     GVR+
Sbjct: 279 RLVVIGES---LGVRI 291


>gi|973285|gb|AAC43950.1| SpaO [Salmonella enterica]
 gi|973289|gb|AAC43953.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
           1]
 gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
           1]
          Length = 325

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 30/50 (60%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           + ++ V++  +LGS  +Q+ + +   +GDVI LD+RV   + + +  + +
Sbjct: 251 LEDVDVELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKPM 300


>gi|167573401|ref|ZP_02366275.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia oklahomensis C6786]
          Length = 139

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
           + ++ + + + + +  + I+ L  L  G V+ L     +  V +    Q I  GE+  + 
Sbjct: 63  LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 122

Query: 131 EDDTHFGVRVI 141
               H GVR+ 
Sbjct: 123 ---AHLGVRIN 130


>gi|161503488|ref|YP_001570600.1| type III secretion system protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864835|gb|ABX21458.1| hypothetical protein SARI_01564 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 322

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 37  NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96
             + +++ +++    E + +    IL+    +   +  +P  +   +G   ++I  L  L
Sbjct: 212 TEDNMMKFDELVQDIETLLAQEGPILKSDIASSVELEQLPQSVLFEIGRASVEIGQLRQL 271

Query: 97  SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
             GDV+ +       V I +N + I +GE+         F VR+ 
Sbjct: 272 KAGDVLPVGGCFAPEVTIRLNGRVIGQGELIA---CGNEFMVRIT 313


>gi|157692311|ref|YP_001486773.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
 gi|194014958|ref|ZP_03053575.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
 gi|157681069|gb|ABV62213.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
 gi|194013984|gb|EDW23549.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
          Length = 332

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + S+ N   ++ T   +  IM   + +   LG   M +   +NL  GD I LDK V   +
Sbjct: 236 MQSERNEPKQQETKAIEKRIMTAKIPVVAELGESEMTVEEFLNLEIGDCIALDKPVNAPL 295

Query: 113 DITINNQK 120
            + + N+ 
Sbjct: 296 TVMVGNKP 303


>gi|289810465|ref|ZP_06541094.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 223

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +  N   ++ +    +  +PVK++ +L    + ++ L  + +  +++L   V  +V+I  
Sbjct: 132 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMA 191

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 192 NGVLLGNGELVQMNDT---LGVEIHEWLSE 218


>gi|15643443|ref|NP_228487.1| flagellar motor switch protein FliM [Thermotoga maritima MSB8]
 gi|4981202|gb|AAD35762.1|AE001740_8 flagellar motor switch protein FliM [Thermotoga maritima MSB8]
          Length = 328

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IPV +Q ++G   +++  +++L  GDVI L     + + I +  +   +G   I      
Sbjct: 255 IPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGVFKG 311

Query: 135 HFGVRVI 141
            + V+V 
Sbjct: 312 KYAVKVT 318


>gi|157154771|ref|YP_001464198.1| type III secretion apparatus protein EpaO2 [Escherichia coli
           E24377A]
 gi|300820662|ref|ZP_07100813.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 119-7]
 gi|309793923|ref|ZP_07688348.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 145-7]
 gi|157076801|gb|ABV16509.1| type III secretion apparatus protein EpaO2 [Escherichia coli
           E24377A]
 gi|300526926|gb|EFK47995.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 119-7]
 gi|308122330|gb|EFO59592.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 145-7]
          Length = 190

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +  +  L    +I+L     +++ I 
Sbjct: 98  NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIKIR 157

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 158 VNGALTGYGELVEVDD---KLGVEI 179


>gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
 gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
          Length = 320

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           +S+      E + +     + N+PV + +   S  ++ S+LV+L  GDVI L  R+ E +
Sbjct: 225 VSASERATREAARNAITAGLQNVPVAVSVKFQSVRLEPSDLVDLQPGDVIPLTHRLDEPL 284

Query: 113 DITINNQKIA 122
           DI    +  A
Sbjct: 285 DIVAAGRTFA 294


>gi|209695733|ref|YP_002263663.1| flagellar motor switch protein FliM [Aliivibrio salmonicida
           LFI1238]
 gi|208009686|emb|CAQ79985.1| polar flagellar switch protein FliM (flagellar motor switch protein
           FliM) [Aliivibrio salmonicida LFI1238]
          Length = 343

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S    D IM++PV+M
Sbjct: 204 IEVDGGGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVEM 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L++L  GD+I ++    E+  + + +    +G++    +      V+
Sbjct: 260 KVNLLESEISLRDLMDLQAGDIIPIEMP--EAATVFVEDLPTYRGKV---GKSGDKLAVQ 314

Query: 140 VIEILN 145
           + E + 
Sbjct: 315 ITEKIK 320


>gi|253573530|ref|ZP_04850873.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847058|gb|EES75063.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 333

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           +S   + + E+     + +    + +   LG   + +   ++LS GDVI+L+K V E + 
Sbjct: 236 VSQKKSRVPEEVEALRNRVNKAKLPIIAELGESQITVREFLSLSVGDVISLNKPVQEGLQ 295

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           I + ++    G    +++      V++ EI++ 
Sbjct: 296 IRVGDRLKYIGSPGTVKD---RLAVQIDEIVSE 325


>gi|254301455|ref|ZP_04968899.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
 gi|157810889|gb|EDO88059.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
          Length = 319

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
            +  + +D + +    +          + D +   PV ++ +L    + ++ L     G 
Sbjct: 213 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 269

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
           V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 270 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 300


>gi|76818002|ref|YP_335737.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710b]
 gi|254264677|ref|ZP_04955542.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
 gi|76582475|gb|ABA51949.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710b]
 gi|254215679|gb|EET05064.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
          Length = 319

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
            +  + +D + +    +          + D +   PV ++ +L    + ++ L     G 
Sbjct: 213 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 269

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
           V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 270 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 300


>gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
           14580]
 gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
           14580]
 gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2]
 gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580]
 gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2]
          Length = 332

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + SD      + T + +  I+   + +   LGS  + I   +NL  GD ITLDK V E +
Sbjct: 236 MQSDRIEPKPEETKSIEKRILTAQIPIVAELGSSELTIEEFLNLEIGDCITLDKSVAEPL 295

Query: 113 DITINNQK 120
            + + ++ 
Sbjct: 296 TVLVGDKP 303


>gi|167898810|ref|ZP_02486211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 7894]
          Length = 264

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S            + P              + D +   
Sbjct: 145 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 189

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 190 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 245


>gi|281411906|ref|YP_003345985.1| flagellar motor switch protein FliM [Thermotoga naphthophila
           RKU-10]
 gi|281373009|gb|ADA66571.1| flagellar motor switch protein FliM [Thermotoga naphthophila
           RKU-10]
          Length = 328

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +PV +Q ++G   +++  +++L  GDVI L     + + I +  +   +G   I      
Sbjct: 255 VPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGVFKG 311

Query: 135 HFGVRVI 141
            + V+V 
Sbjct: 312 KYAVKVT 318


>gi|296133037|ref|YP_003640284.1| flagellar motor switch protein FliM [Thermincola sp. JR]
 gi|296031615|gb|ADG82383.1| flagellar motor switch protein FliM [Thermincola potens JR]
          Length = 333

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            + +  +LG   +++  L+ L  GDVI LD R  + + I + ++K   G         + 
Sbjct: 260 KITLSAVLGETTIKLGELLELQPGDVIQLDNRTTDELKILVGDRKKFYGR---PGTVGSR 316

Query: 136 FGVRVIEILNA 146
             V++  ++  
Sbjct: 317 LAVQITRLVKE 327


>gi|150021178|ref|YP_001306532.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
           BI429]
 gi|149793699|gb|ABR31147.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
           BI429]
          Length = 329

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ---KIAKGEITIMEEDD 133
           V++   +G   + + +++NL  GDVI L+    + + I +N +     A G         
Sbjct: 259 VELSATIGETNLTLWDILNLEVGDVIRLNTFKEDPLKIKLNGKDKFLGAPG------VFK 312

Query: 134 THFGVRVIEILNAQ 147
             + V+++E+ + +
Sbjct: 313 GKYAVKILEVFDEE 326


>gi|148269397|ref|YP_001243857.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
 gi|147734941|gb|ABQ46281.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
          Length = 328

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +PV +Q ++G   +++  +++L  GDVI L     + + I +  +   +G   I      
Sbjct: 255 VPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGVFKG 311

Query: 135 HFGVRVI 141
            + V+V 
Sbjct: 312 KYAVKVT 318


>gi|145284339|gb|ABP51920.1| AscQ [Aeromonas veronii bv. sobria]
          Length = 308

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P    +   Q  ++  +     +D     E        +  +P+++   +G   +    L
Sbjct: 204 PFAYCQPHQQHLELTAMHNAKPADPFGPTE--------LEQLPIQVSFEVGRQTLDWHTL 255

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
            +L  G +I LD  +   V I  N   +  G +    E     GVRV
Sbjct: 256 TSLQPGALIDLDTPLDGEVRIISNGHSLGVGRLV---EIQGRLGVRV 299


>gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
           27405]
 gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           2360]
 gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
 gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
           27405]
 gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           2360]
 gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
 gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           1313]
          Length = 328

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V ++ ILG   +Q+++ + L  GDVITLD  V  ++D+ + +    +G   +       
Sbjct: 258 KVPVRAILGRATIQVADFLELQPGDVITLDSNVNGNLDVLVGDLLKFRGSPGV---KKNR 314

Query: 136 FGVRVIEILNAQ 147
             +++ E++  +
Sbjct: 315 NAIKITEVIRRE 326


>gi|167567945|ref|ZP_02360861.1| SctQ [Burkholderia oklahomensis EO147]
 gi|167573181|ref|ZP_02366055.1| SctQ [Burkholderia oklahomensis C6786]
          Length = 431

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 49  NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           ++SE        +   + D    I  + + +Q  + +  + I  L  L  G VI L   V
Sbjct: 331 SMSEDADQADAGLAVATADEPARIGELELPVQFEIDTVSLPIDQLSVLEPGYVIELPVAV 390

Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            ++ + I ++ Q +  GE+  + E   H GVR+I
Sbjct: 391 ADARLRIVVHGQTVGFGELVAVGE---HLGVRII 421


>gi|147678396|ref|YP_001212611.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
 gi|146274493|dbj|BAF60242.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
          Length = 330

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIP-VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
               ++ + ++        +  P +++ ++ G   + + + + L +GDV+ LDK+V + +
Sbjct: 235 FGPQTSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGDVLILDKKVDQDL 294

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVI 141
           D+ I      K          +   V++ 
Sbjct: 295 DLYIGEHLKFK---VQAGALGSKLAVQIT 320


>gi|212711702|ref|ZP_03319830.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM
           30120]
 gi|212685804|gb|EEB45332.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM
           30120]
          Length = 309

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +  + VK+  +LG   + +  L  L  G V ++ +     V +  N Q IA+GE+T + +
Sbjct: 231 LHGLTVKLTFVLGHSDITVGELDTLQPGTVYSIGENKEREVKVYANKQLIAEGELTYIGD 290

Query: 132 DDTHFGVRVIEILN 145
            D   G+ +  +++
Sbjct: 291 SDE-LGLEIKRLVS 303


>gi|255022967|ref|ZP_05294953.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208]
          Length = 503

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           + +I       E   + +    ++      T  +E++  +   + + + +  +   + E 
Sbjct: 382 MYQIFNPAAAKEMAQLTLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 441

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                 ++  IPV ++++ G+  +++   ++  + DVI L + + E + + +N   I KG
Sbjct: 442 EQ----ILEEIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497

Query: 125 EITIME 130
            +  ++
Sbjct: 498 ILVRVD 503


>gi|330819400|ref|YP_004348262.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           gladioli BSR3]
 gi|327371395|gb|AEA62750.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           gladioli BSR3]
          Length = 474

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDD 133
           I + +Q  + +  + +  L  L  G V+ L     ++ + + ++ Q +  GE+  + E  
Sbjct: 400 IELPVQFEIDTVALPLDQLSALGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVGE-- 457

Query: 134 THFGVRVI 141
            H GVR+I
Sbjct: 458 -HLGVRII 464


>gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 328

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 58  SNNILEKSTDNFDLIM----NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           S    E+S  N   I     N  + +++++G   + + +L+ LS GDVI L++ + + +D
Sbjct: 236 STAAQERSPANIAAIRTKLENTTIPIKVVMGKTVITVRDLLALSVGDVIPLNRNISQELD 295

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           I I N+    G+  +         ++V  I+  +
Sbjct: 296 IVIGNRAKFLGKPGV---FANRMAIQVTGIVEEE 326


>gi|1483321|emb|CAA68097.1| HrcQb protein [Pantoea agglomerans]
          Length = 108

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           S  +  +   +  L+   P+ +++  G   + +  L  L  G ++TLD        +   
Sbjct: 20  SEPLQSEDNPHIALL---PLSLEVRCGRTRLTLGELQQLQLGRILTLDNMTPGEAGLYHG 76

Query: 118 NQKIAKGEITIME 130
           +  IA+GE+  +E
Sbjct: 77  DTLIARGELVDVE 89


>gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 308

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           P+ ++ +LG   M++   + L  GDVI LD RVG  + + + N+   + +  ++ E    
Sbjct: 242 PLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNKLAFQAKPGVVGE---R 298

Query: 136 FGVRVI 141
             V++ 
Sbjct: 299 MAVQIT 304


>gi|167840285|ref|ZP_02466969.1| Surface presentation of antigens (SPOA) protein domain protein
           [Burkholderia thailandensis MSMB43]
          Length = 187

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF--- 69
           D+L+   +  D+P      S     ++             P  S SN+    +       
Sbjct: 49  DDLDEPIVAGDSPGDLRGDSRADLQADSQAHSRSDLWTDSPTDSPSNSPARDAPSAVPEP 108

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITI 128
             + ++ + + + + +  + I+ L  L  G V+ L        V +    Q I  G +  
Sbjct: 109 ADLGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQAIGGGRLVA 168

Query: 129 MEEDDTHFGVRV 140
           +     H GVR+
Sbjct: 169 VG---AHLGVRI 177


>gi|153954743|ref|YP_001395508.1| hypothetical protein CKL_2125 [Clostridium kluyveri DSM 555]
 gi|219855207|ref|YP_002472329.1| hypothetical protein CKR_1864 [Clostridium kluyveri NBRC 12016]
 gi|146347601|gb|EDK34137.1| FliM [Clostridium kluyveri DSM 555]
 gi|219568931|dbj|BAH06915.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 331

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
              D   + E      + +  + + +  +LG+  + ++  +NL+ GDV+TL ++  + V 
Sbjct: 236 QDGDEEVLAESREKLRERLNIVGIHLTAVLGTVEVTVNEFLNLNIGDVLTLKEKTTDPVK 295

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           + + ++    G+  I+ +   + G+ +++I++ 
Sbjct: 296 LMLEDKIYYYGKPGIIGK---NMGIEILDIIDK 325


>gi|973273|gb|AAC43941.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +      ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|238023707|ref|YP_002907939.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           glumae BGR1]
 gi|237878372|gb|ACR30704.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           glumae BGR1]
          Length = 445

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDD 133
           + + +Q  + +  + +  L +L  G V+ L     ++ + + ++ Q +  GE+  + E  
Sbjct: 371 VELPVQFEIDTVALPLDQLSSLGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVGE-- 428

Query: 134 THFGVRVI 141
            H GVR+I
Sbjct: 429 -HLGVRII 435


>gi|170690584|ref|ZP_02881751.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           graminis C4D1M]
 gi|170145019|gb|EDT13180.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           graminis C4D1M]
          Length = 446

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSK 98
            L ++  + +  +P+  D     ++ ++  D+  +++PV+    + +  + +S L  L  
Sbjct: 338 SLTKEPIMTDELDPVRPDDLLAPDQHSNPIDIGELDLPVQF--EVDTVALPLSQLYALRP 395

Query: 99  GDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           G V+ L        + +  + Q I  GE+  + +   H G+R+
Sbjct: 396 GYVLELPTPVADAQLKLVTHGQTIGYGELVTVGD---HLGIRI 435


>gi|973269|gb|AAC43938.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +      ++ +    +  +PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|322421724|ref|YP_004200947.1| flagellar motor switch protein FliM [Geobacter sp. M18]
 gi|320128111|gb|ADW15671.1| flagellar motor switch protein FliM [Geobacter sp. M18]
          Length = 325

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 28/51 (54%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           + +M  P+ + + +G   + +++L+ L+ GDVI LD    + + + +   K
Sbjct: 249 EELMGAPMDISVEMGGATVSLADLLGLTPGDVIMLDSSGKDELSVKVGGTK 299


>gi|167820376|ref|ZP_02452056.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 91]
          Length = 233

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S            + P              + D +   
Sbjct: 114 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 158

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 159 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 214


>gi|42524697|ref|NP_970077.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
           HD100]
 gi|39576907|emb|CAE78136.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
           HD100]
          Length = 333

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 53/123 (43%), Gaps = 13/123 (10%)

Query: 9   SYIKDNLEGRSMHIDNPLQ-------DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
           S+++  +  + + I  P         D  + + T    ++I    ++ I + + +     
Sbjct: 186 SFVRTEVNPQFVGIVPPTDVVIASTFDVELENATGTISIVIPYATIEPIKQKLQTGFQVE 245

Query: 62  LEKSTDNF------DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            +++          + ++   +++++ LG   +++ +L+NL  GDVI LD+      D+ 
Sbjct: 246 TDQTDKKLWTAIIQEQLLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDVA 305

Query: 116 INN 118
           +  
Sbjct: 306 VEG 308


>gi|975754|gb|AAC43845.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +      ++      +  +PVK++ +L    + +++L  + +  +++L      +V+I  
Sbjct: 212 EEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|157850891|gb|ABV90252.1| flagellar motor switch protein [Bacillus subtilis subsp. sadata]
          Length = 110

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + SD N    + T + +  IM   + +   LG+  + I   ++L  GD ITLDK V + +
Sbjct: 14  MQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPL 73

Query: 113 DITINNQK 120
            + + ++ 
Sbjct: 74  TVLVGDKP 81


>gi|153003619|ref|YP_001377944.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027192|gb|ABS24960.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. Fw109-5]
          Length = 334

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDV--ITLDKRVGESVDITINNQKIAKGEITIMEE 131
            +PV +++ L    + ++ L  L  G +  + LD+R    V +    + +A+GE+    +
Sbjct: 264 QLPVVLEVELARVEVTLAELARLEPGGILPLALDRRG--LVTLRAGERAVARGELV---D 318

Query: 132 DDTHFGVRVIEI 143
            D   GVR+I++
Sbjct: 319 VDGAVGVRIIDL 330


>gi|312171378|emb|CBX79637.1| Surface presentation of antigens protein spaO [Erwinia amylovora
           ATCC BAA-2158]
          Length = 308

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 54  ISSDSNNILEKSTDNFDLIMN---IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           + +   N  E   +  + +++   +PV ++ +L    + +S L  +  G  + ++    +
Sbjct: 203 VENQLENNHEMYLEEEEALLDWTKLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEK 262

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            + I +N +  A GE+  ME+    F V + ++
Sbjct: 263 KIKIYLNRKLFACGELVAMED--GSFAVEINQV 293


>gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM
           1740]
 gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes]
          Length = 354

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++++   ++ +   L+    V +  +LG   + +  ++ L  GD++ LD+   ++V + 
Sbjct: 238 SETSSKKSRNRELQALLGGAAVNISAVLGGTSLDLKEVLELGVGDIVRLDRPADDTVIVN 297

Query: 116 INN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           ++   + IA      +        V++ E++  +
Sbjct: 298 VDGREKYIA-----TIGLQRYRKTVKIKEVIKTE 326


>gi|311068153|ref|YP_003973076.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
 gi|310868670|gb|ADP32145.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
          Length = 332

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + S+ N    + T + +  IM   + +   LG+  + I   ++L  GD ITLDK V + +
Sbjct: 236 MQSERNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPL 295

Query: 113 DITINNQK 120
            + + ++ 
Sbjct: 296 TVLVGDKP 303


>gi|167907138|ref|ZP_02494343.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei NCTC 13177]
          Length = 260

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
            +  + +D + +    +          + D +   PV ++ +L    + ++ L     G 
Sbjct: 154 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 210

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
           V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 211 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 241


>gi|975758|gb|AAC43848.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +      ++      +  +PVK++ +L    + +++L  + +  +++L      +V+I  
Sbjct: 212 EEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
 gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
          Length = 359

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 81  IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
            ILG   + +++ +NL  GDVI LD    E +D+ I  + I K     + +    + V++
Sbjct: 264 AILGKTEIYLNDFLNLEVGDVIRLDSFYDEPIDLEIEERPIFK---VNVGKSKGFYSVKI 320

Query: 141 IE 142
           +E
Sbjct: 321 VE 322


>gi|8996040|gb|AAF82339.1|AF005744_18 YsaQ [Yersinia enterocolitica]
 gi|15088608|gb|AAK84119.1|AF369954_17 YsaQ [Yersinia enterocolitica]
          Length = 312

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +D+    + + +    + E     FD +  + VK+  +LG   + +  L ++  G V +L
Sbjct: 208 DDMQETEDTVPTLDEVLPEYLPSRFD-VAKLTVKLTFVLGHSEILLEELAHIQPGSVYSL 266

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
                  V +  N Q +A+GE+  + + +   G+ V ++
Sbjct: 267 GADKDREVKVYANKQLVAEGELIYIGDGEE-LGLEVTKL 304


>gi|292487270|ref|YP_003530142.1| surface presentation of antigens protein spaO [Erwinia amylovora
           CFBP1430]
 gi|292900358|ref|YP_003539727.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200206|emb|CBJ47334.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552689|emb|CBA19734.1| Surface presentation of antigens protein spaO [Erwinia amylovora
           CFBP1430]
          Length = 308

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 54  ISSDSNNILEKSTDNFDLIMN---IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           + +   N  E   +  + +++   +PV ++ +L    + +S L  +  G  + ++    +
Sbjct: 203 VENQLENNNEMYLEEEEALLDWTKLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEK 262

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            + I +N +  A GE+  ME+    F V + ++
Sbjct: 263 KIKIYLNRKLFACGELVAMED--GSFAVEINQV 293


>gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13]
          Length = 332

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + +   LG   +  S+L+N++ GDV+ L +++ E + + ++N+    G++    +   + 
Sbjct: 260 LTVTTELGHSEISFSDLLNITIGDVLPLQQKIDEPIIVKVDNKPSFYGQV---GQVKKNM 316

Query: 137 GVRVIEILNA 146
            V+++E +  
Sbjct: 317 AVQILEKIKE 326


>gi|167915492|ref|ZP_02502583.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 112]
          Length = 215

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 41  LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100
            +  + +D + +    +          + D +   PV ++ +L    + ++ L     G 
Sbjct: 109 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 165

Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132
           V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 166 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 196


>gi|253688596|ref|YP_003017786.1| type III secretion system apparatus protein YscQ/HrcQ
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755174|gb|ACT13250.1| type III secretion system apparatus protein YscQ/HrcQ
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 386

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 53/115 (46%), Gaps = 12/115 (10%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
             VS P++ ++ +      +  +   +  S+N+ E           +PV + +  GS  M
Sbjct: 253 ETVSMPSSATDTMFADPHSEASAFEFTQKSDNVTESLPP-------LPVTLHLRCGSLTM 305

Query: 89  QISNLVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            ++ L +L+ G V+TL D   G++  +   +  +A G++    + +   G+++ +
Sbjct: 306 TLTELQHLASGSVLTLRDVVPGQA-WLYYGDIALASGDLV---DVEGRLGLQITQ 356


>gi|299822274|ref|ZP_07054160.1| flagellar motor switch protein [Listeria grayi DSM 20601]
 gi|299815803|gb|EFI83041.1| flagellar motor switch protein [Listeria grayi DSM 20601]
          Length = 82

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           IP+++   LG    Q+ NL++L KG +  L+      V I I    I  GEI      D 
Sbjct: 7   IPLQIDFELGRTNQQVGNLLDLKKGTIFRLECSTANVVKIVIAGTCIGYGEILT---KDG 63

Query: 135 HFGVRVIEILNA 146
              V+++++ +A
Sbjct: 64  KLFVKIVKLGDA 75


>gi|123443728|ref|YP_001007699.1| type III secretion apparatus protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090689|emb|CAL13565.1| type III secretion apparatus protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 312

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           VK+  +LG   + +  L ++  G V +L       V +  N Q +A+GE+  + + +   
Sbjct: 239 VKLTFVLGHSEILLEELAHIQPGSVYSLGADKDREVKVYANKQLVAEGELIYIGDGEE-L 297

Query: 137 GVRVIEI 143
           G+ V ++
Sbjct: 298 GLEVTKL 304


>gi|161502065|ref|YP_001569177.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|973277|gb|AAC43944.1| SpaO [Salmonella enterica]
 gi|973281|gb|AAC43947.1| SpaO [Salmonella enterica]
 gi|160863412|gb|ABX20035.1| hypothetical protein SARI_00082 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 303

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +      ++ +    +  +PVK++ +L    + +++L  + +  +++L      +V+I  
Sbjct: 212 EEEKNETETAEILPGLSQLPVKLEFVLYRKQVTLADLEAIGQQQLLSLPTNAECNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRV 140
           N   +  GE+  M +     GV +
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEI 292


>gi|187933524|ref|YP_001885005.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721677|gb|ACD22898.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
           Eklund 17B]
          Length = 331

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D   I E      + I  + +++   LG+  + + + + L+KGD+I LD +    + + +
Sbjct: 239 DEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYV 298

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +++    +  +  +   + GV +++I++ +
Sbjct: 299 GDEECYYAKPGVTGK---NMGVAILDIIDKE 326


>gi|332344758|gb|AEE58092.1| Type III secretion apparatus protein [Escherichia coli UMNK88]
          Length = 81

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            +   ++PVK++ +LG   M +  +  L    +I+L     ++++I +N      GE+  
Sbjct: 2   INSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIRVNGALTGYGELVE 61

Query: 129 MEEDDTHFGVRV 140
           +++     GV +
Sbjct: 62  VDD---KLGVEI 70


>gi|145301462|ref|YP_001144301.1| type III secretion system protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|38201228|emb|CAD56763.1| ascQ protein [Aeromonas salmonicida subsp. salmonicida]
 gi|66947959|emb|CAE83096.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida]
 gi|142856344|gb|ABO92553.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 308

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P    +   Q  ++  +    S++     E        +  +P+++   +G   +    L
Sbjct: 204 PFAYCQPNQQHLELTAMHNAASAEPFGPTE--------LDQLPIQVSFEVGRQTLDWHTL 255

Query: 94  VNLSKGDVITLDKRVGESVD----ITINNQKIAKGEITIMEEDDTHFGVRV 140
            +L  G +I L    G  +D    I  N   +  G +    E     GVRV
Sbjct: 256 TSLQPGALIDL----GTPLDGEVRIISNGHLLGVGRLV---EIQGRLGVRV 299


>gi|34500876|gb|AAQ73904.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 379

 Score = 45.6 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 25/142 (17%)

Query: 5   VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64
           ++  ++   ++E  SM    P  DT ++ P +++  L      DN++E +          
Sbjct: 243 LAPYTFTVTDMETVSM----PATDTMLAVPHSDASALEHTPTSDNVTENLPP-------- 290

Query: 65  STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
                     +PV + I  GS  M ++ L +L+ G V+TL   V     +   +  +A G
Sbjct: 291 ----------LPVTLHIRCGSLTMTLTELQHLASGSVLTLRDVVQGQAWLYHGDIALASG 340

Query: 125 EITIMEEDDTHFGVRVIEILNA 146
           ++    + +   G+++ +  +A
Sbjct: 341 DLV---DVEGRLGLQITQCFSA 359


>gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
 gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
 gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
          Length = 352

 Score = 45.6 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 35/64 (54%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++++   ++ +   L+    V +  ILG   + +  +++L  GD++ LD+   ++V I 
Sbjct: 239 SETSSKKSRNKELQALLGGAKVNVAAILGETKLTLREILDLEVGDIMRLDRPADDTVIIN 298

Query: 116 INNQ 119
           ++ +
Sbjct: 299 VDGR 302


>gi|331654352|ref|ZP_08355352.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli M718]
 gi|331047734|gb|EGI19811.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli M718]
          Length = 315

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      +    +PVK++ +LG   M +  +  L    +I+L     ++++I +N     
Sbjct: 230 ENDDQMINSYEELPVKIEFVLGKKVMNLYEIDELCAKRIISLLPESEKNIEIRVNGALTG 289

Query: 123 KGEITIMEEDDTHFGVRV 140
            GE+  +++     GV +
Sbjct: 290 YGELVEVDD---KLGVEI 304


>gi|238924157|ref|YP_002937673.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
           33656]
 gi|238875832|gb|ACR75539.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
           33656]
 gi|291524890|emb|CBK90477.1| flagellar motor switch protein FliM [Eubacterium rectale DSM 17629]
          Length = 326

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEE 131
            IPVK   +LG   + + +   L  GDVI LD  V + +DI + N  +  A     +   
Sbjct: 257 QIPVK--AVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTA-----LPGS 309

Query: 132 DDTHFGVRVIEILNAQ 147
               + VR+  ++  +
Sbjct: 310 SGDKYAVRITSVVREE 325


>gi|188534811|ref|YP_001908608.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
 gi|188029853|emb|CAO97734.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 308

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 60  NILEKSTDNFDLIMN---IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           N  E   +  +++++   +PV ++ +L    + ++ L  ++ G  + L     + + I +
Sbjct: 209 NNRETYREEEEVLLDWTKLPVDIEFVLDKYTVTLAELEEITPGVALPLKPAAEKKIKIYL 268

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143
           N +  A GE+  +E+    F V + ++
Sbjct: 269 NRKLFACGELVALED--GSFAVEINQV 293


>gi|973297|gb|AAC43959.1| SpaO [Salmonella enterica]
 gi|975742|gb|AAC43836.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +      ++ D    + ++PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|188588470|ref|YP_001920165.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251780168|ref|ZP_04823088.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188498751|gb|ACD51887.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243084483|gb|EES50373.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 331

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           D   I E      + I  + +++   LG+  + + + + L+KGD+I LD +    + + +
Sbjct: 239 DEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYV 298

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +++    +  +  +   + GV +++I++ +
Sbjct: 299 GDEECYYAKPGVTGK---NMGVAILDIIDKE 326


>gi|975746|gb|AAC43839.1| SpaO [Salmonella enterica]
 gi|975750|gb|AAC43842.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 57  DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           +      ++ D    + ++PVK++ +L    + ++ L  + +  +++L      +V+I  
Sbjct: 212 EEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMA 271

Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           N   +  GE+  M +     GV + E L+ 
Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298


>gi|307725659|ref|YP_003908872.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. CCGE1003]
 gi|307586184|gb|ADN59581.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. CCGE1003]
          Length = 511

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEE 131
           +++PV+    + +  + +S L  L  G V+ L   V E+ + +  + Q I  GE+  + +
Sbjct: 437 LDLPVQF--EVDTVALPLSQLYALRPGYVLELPTPVAEAQLKLVTHGQTIGYGELVTVGD 494

Query: 132 DDTHFGVRV 140
              H G+R+
Sbjct: 495 ---HLGIRI 500


>gi|294500928|ref|YP_003564628.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
 gi|294350865|gb|ADE71194.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
          Length = 328

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            SS     +++     + I +  +++   LG+  + I + + L  GDVI L   V   + 
Sbjct: 237 QSSKKEPNVQEVEQLKEQINDAELQVVAELGTADISIEDFLALDAGDVIRLQTSVHNPLT 296

Query: 114 ITINN--QKIAK-GEITIMEEDDTHFGVRVIEILNAQ 147
           I +    + IA+ G++         F V++++ +  +
Sbjct: 297 IYVGEQPKFIAQPGKV------SRKFAVQILDDVKRR 327


>gi|303240276|ref|ZP_07326795.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
           CD2]
 gi|302592186|gb|EFL61915.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
           CD2]
          Length = 329

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            S+       +S D  +L I N  V ++ +LG   + +++ + L  GDVI LD  V  ++
Sbjct: 235 FSNSEKEKTNESKDTIELKIENTKVPVRAVLGRSTILVNDFLELQPGDVIPLDSSVSGNL 294

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +I + +     G             ++V E++  +
Sbjct: 295 EILVGDLLKFYG---TPGVKKNRVAIKVNEVVRGE 326


>gi|291529031|emb|CBK94617.1| flagellar motor switch protein FliM [Eubacterium rectale M104/1]
          Length = 326

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEE 131
            IPVK   +LG   + + +   L  GDVI LD  V + +DI + N  +  A     +   
Sbjct: 257 QIPVK--AVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTA-----LPGS 309

Query: 132 DDTHFGVRVIEILNAQ 147
               + VR+  ++  +
Sbjct: 310 SGDKYAVRITSVVREE 325


>gi|307944365|ref|ZP_07659706.1| putative surface presentation of antigens (spoa) protein [Roseibium
           sp. TrichSKD4]
 gi|307772711|gb|EFO31931.1| putative surface presentation of antigens (spoa) protein [Roseibium
           sp. TrichSKD4]
          Length = 348

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 22/116 (18%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG  + ID  LQ+ + + PT  +    ++N  +  +  +                    I
Sbjct: 237 EGSELIIDGDLQEISANGPTEMTNKAGEENMGEGAAGKVDE------------------I 278

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES--VDITINNQKIAKGEITIM 129
            V + +  G   + I  L  L  G V+ L   VG+   V++ +N QKI +G +  +
Sbjct: 279 KVNLVVSAGELQLPIGELRELETGSVLRL--PVGQPGNVNLMVNGQKIGEGVLVTI 332


>gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
           2522]
 gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
           2522]
          Length = 332

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +   P+ + + LG   + I+  + L + DVI L++ + + + + + N+     +     +
Sbjct: 254 LKQAPLDVIVELGQSQISIAEFLQLGENDVIELNQTIDDPLLVKLGNEPKYYSQ---PGK 310

Query: 132 DDTHFGVRVIEILNAQ 147
                 V++ + +  +
Sbjct: 311 VKGKLAVQITDSIVKE 326


>gi|302343739|ref|YP_003808268.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
           2075]
 gi|301640352|gb|ADK85674.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
           2075]
          Length = 328

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 8/52 (15%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
            V+  + LG   +   +L+ L  GDV+ LD          IN   +A  E  
Sbjct: 257 EVEFTVELGRTELTSGDLLQLKVGDVLQLDSD--------INGHLVAMVEGV 300


>gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
           YK9]
 gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
           YK9]
          Length = 333

 Score = 45.2 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + + + LG   + +   +NL +GDVITL+K VGE ++I + N+    G            
Sbjct: 259 LPIAVELGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNKIKFIG---SPGSIKDRV 315

Query: 137 GVRVIEILNA 146
            V+V EI++ 
Sbjct: 316 AVQVDEIVSE 325


>gi|239826624|ref|YP_002949248.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
 gi|239806917|gb|ACS23982.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
          Length = 334

 Score = 44.8 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEEDD 133
            + +   LG+  + I   + L  GDVI LD+ + + + I + +  + I +       + +
Sbjct: 260 KLPIIAELGTATITIQEFLQLEVGDVIELDQSIQQPLLIKVGDIPKFIGQ-----PGKRN 314

Query: 134 THFGVRVIEILNAQ 147
               V++++    +
Sbjct: 315 KRLAVQILDAFKGE 328


>gi|6708103|gb|AAF25800.1|AF172245_2 BscQ [Bordetella bronchiseptica]
          Length = 123

 Score = 44.8 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SV 112
            + D      ++    D    IPV++   LG     ++ L +L  G    L++ + +  V
Sbjct: 32  RTPDPGETPAQAEATLDT-DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPV 90

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            +  N   +  G +    + D   GV +  +
Sbjct: 91  MVRANGLLLGSGRLV---DIDGRIGVVLQSV 118


>gi|297569682|ref|YP_003691026.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925597|gb|ADH86407.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 330

 Score = 44.8 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           + I N  V+ ++ LG   +    ++NL  GD +TLD+R  E + + +
Sbjct: 253 ENIKNAEVEFKVELGRTTVPAREIINLQVGDTLTLDRRTDEQLPVFV 299


>gi|312879599|ref|ZP_07739399.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
           12260]
 gi|310782890|gb|EFQ23288.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
           12260]
          Length = 334

 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 65  STDNFDLIMN--------IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
              N + I +        + V + + LG C + + +++ L   DVI LD +  + + + +
Sbjct: 239 GKKNLEGIRDMLSKRLHEVSVPLALELGHCALTLGDVLQLQVNDVIRLDGKATDPLGLRV 298

Query: 117 NNQK 120
            N+ 
Sbjct: 299 GNRV 302


>gi|315281354|ref|ZP_07869994.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|313614993|gb|EFR88497.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|328475657|gb|EGF46406.1| flagellar motor switch domain protein [Listeria monocytogenes 220]
          Length = 54

 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           M + ++  LS GDV+ ++K+ G  V+I ++ +K+  GE  +M+E   +FG+ + EI
Sbjct: 1   MPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDE---NFGIVISEI 53


>gi|227114169|ref|ZP_03827825.1| type III secretion protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 385

 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 12/119 (10%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88
             VS P + ++ +      +  +   +S  +N+ E           +PV + +  GS  M
Sbjct: 258 ETVSMPPSATDTMFADPHSEVSALEFTSMRDNVTESLPP-------LPVTLHLRCGSLTM 310

Query: 89  QISNLVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            ++ L +L+ G V+TL D   G++  +   +  +A G++    + +   G+++ +  ++
Sbjct: 311 TLAELQHLASGSVLTLRDVVPGQA-WLYHGDIALASGDLV---DVEGRLGLQITQRFSS 365


>gi|56460301|ref|YP_155582.1| flagellar motor switch protein FliM [Idiomarina loihiensis L2TR]
 gi|56179311|gb|AAV82033.1| Flagellar motor switch protein [Idiomarina loihiensis L2TR]
          Length = 356

 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +++ P +  E + +  D    S+   +D    +  S    D IM++PV+M
Sbjct: 206 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTD----MRWSKALRDEIMDVPVEM 261

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
              L    M +  +++L +GDVI L+
Sbjct: 262 IAKLAQTEMSLREVMDLREGDVIPLE 287


>gi|46398253|gb|AAS91807.1| AscQ [Aeromonas hydrophila]
          Length = 308

 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 19/111 (17%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P    +   Q  ++  +     +D     E        +  +P+++   +G   +    L
Sbjct: 204 PFAYCQPHQQHLELTAMHNATPADPFGPTE--------LEQLPIQVSFEVGRQTLDWHTL 255

Query: 94  VNLSKGDVITLDKRVGESVD----ITINNQKIAKGEITIMEEDDTHFGVRV 140
            ++  G +I L    G  +D    I  N   +  G +    E     GVR+
Sbjct: 256 TSMQPGALIDL----GTPLDGEVRIISNGHSLGVGRLV---EIQGRLGVRI 299


>gi|167840169|ref|ZP_02466853.1| type III secretion system protein BsaV [Burkholderia thailandensis
           MSMB43]
          Length = 168

 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL +  V  P ++        D    + P + D   +              
Sbjct: 48  EGENIMLNEPLTEPAVDDPHDDLHDEPTTADALPDASPQAFDVAAL-------------- 93

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N     +GE+  + E 
Sbjct: 94  PVTLEFVLHDERVTVAQLAGCHPGLVLPLRGAPGE-VTIRANGLPFGRGELIQVGEQ 149


>gi|323703196|ref|ZP_08114849.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531855|gb|EGB21741.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
           DSM 574]
          Length = 330

 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V++ +++G   + + + + L  GDV+ L +   + +D+ ++N+   K     +       
Sbjct: 259 VEISVVVGETDISVKDFLQLQVGDVLPLARGFNQDLDMYVDNELKYK---VQVGTVGQSL 315

Query: 137 GVRVIEI 143
            V+V  +
Sbjct: 316 AVQVTSL 322


>gi|167724227|ref|ZP_02407463.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei DM98]
          Length = 182

 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 16  EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75
           EG ++ ++ PL D+ + +  + S            + P              + D +   
Sbjct: 63  EGENIMLNEPLADSAIDALHDASHDTSHDEPTAAHAPPAF------------DIDAL--- 107

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           PV ++ +L    + ++ L     G V+ L    GE V I  N Q   +GE+  + E 
Sbjct: 108 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 163


>gi|331678848|ref|ZP_08379522.1| typeIII secretion apparatus protein [Escherichia coli H591]
 gi|331073678|gb|EGI44999.1| typeIII secretion apparatus protein [Escherichia coli H591]
          Length = 134

 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +   ++PVK++ +LG   M +  +  L    +I+L     +++ I 
Sbjct: 42  NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIKIR 101

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 102 VNGALTGYGELVEVDD---KLGVEI 123


>gi|317486825|ref|ZP_07945641.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921988|gb|EFV43258.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
          Length = 388

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
            +   +S+  ++ +     +  D  +L     V +   L    M + ++  L+ G     
Sbjct: 292 PEEGPMSDENNTAAGAAPSEGVDTGEL----EVTLTFELERRLMTVRDVETLAPGYTFAF 347

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
                  V +  N + + KG +    + +   GV+V+ +
Sbjct: 348 GGDALAPVTLYANGKSVGKGRLV---DLNGTLGVQVVSL 383


>gi|126442961|ref|YP_001063273.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
 gi|126222452|gb|ABN85957.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
          Length = 424

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D+P +     +    ++     +       P  +   +    + +  D +  + + + + 
Sbjct: 300 DSPAEFPADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPAD-LGEVALPVHVE 358

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H GVR+
Sbjct: 359 IDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLGVRI 414


>gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
           27750]
 gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
           27750]
          Length = 327

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
              D+N   +      D  M IPVK   +LG+  + +S+  NL  GD+I +DK+V + ++
Sbjct: 238 QEKDTNTYEDAIETVIDKAM-IPVK--AVLGTSKISVSDFANLQIGDIIRIDKKVDQELE 294

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + + N K  K    +    +  + VRV E++  +
Sbjct: 295 VFVGNIKKFKA---LPGYYEDKYAVRVTEVIRKE 325


>gi|134282037|ref|ZP_01768743.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
 gi|134246566|gb|EBA46654.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
          Length = 424

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D+P +     +    ++     +       P  +   +    + +  D +  + + + + 
Sbjct: 300 DSPAEFPADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPAD-LGEVALPVHVE 358

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H GVR+
Sbjct: 359 IDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLGVRI 414


>gi|255018475|ref|ZP_05290601.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-515]
          Length = 64

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           ++++ G+  +++   ++  + DVI L + + E + + +N   I KG +  +++   HFG+
Sbjct: 1   LEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGI 57

Query: 139 RVIEIL 144
           ++ E++
Sbjct: 58  QMTELV 63


>gi|295399820|ref|ZP_06809801.1| flagellar motor switch protein FliM [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111668|ref|YP_003989984.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
 gi|294978223|gb|EFG53820.1| flagellar motor switch protein FliM [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216769|gb|ADP75373.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
          Length = 334

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            + +   LG+  + I + + L  GDVI LD+ + + + I + +     G+     + +  
Sbjct: 260 KLPIIAELGTATITIQDFLQLEVGDVIELDQSIQQPLLIKVGDIPKFTGQ---PGKRNKR 316

Query: 136 FGVRVIE 142
             V++++
Sbjct: 317 LAVQILD 323


>gi|237751752|ref|ZP_04582232.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
 gi|229373118|gb|EEO23509.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
          Length = 356

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S+++    ++ +   LI    V +  +LG   +    ++ L  GDVI LD+   ++V ++
Sbjct: 238 SETSGKKSRNRELQALIGGADVHIAAMLGGTQLSFKEILELKVGDVIMLDRVADDTVHVS 297

Query: 116 INNQ 119
           I+ +
Sbjct: 298 IDGR 301


>gi|237753388|ref|ZP_04583868.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375655|gb|EEO25746.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 352

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 34/64 (53%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S+++    ++ +   L+    V +  +LG   + +  +++L  GD++ LD+   ++V I 
Sbjct: 239 SETSAKKSRNKELQALLGGAKVNVAAVLGETKLSMHEILDLEVGDIVRLDRPADDTVIIN 298

Query: 116 INNQ 119
           ++ +
Sbjct: 299 VDGR 302


>gi|291519586|emb|CBK74807.1| Flagellar motor switch protein [Butyrivibrio fibrisolvens 16/4]
          Length = 272

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN-QKIAKGEITIM 129
           LI    + ++ +LG+  + +++   L  GD++ LD +V E +D+ + + +K A     + 
Sbjct: 199 LISRAKIPVKAVLGNSVITVADFSQLQVGDIVKLDTKVDEELDVFVGDIRKFA----ALP 254

Query: 130 EEDDTHFGVRVIEILNAQ 147
                 + VRV +I+  +
Sbjct: 255 GASGKEYAVRVTQIIREE 272


>gi|94264049|ref|ZP_01287849.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [delta proteobacterium MLMS-1]
 gi|93455560|gb|EAT05747.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [delta proteobacterium MLMS-1]
          Length = 330

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
            D I N  V +++ LG   +  ++++NL+ GD I L++R  E + + +  
Sbjct: 252 VDNIKNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQLPVYVAG 301


>gi|171316783|ref|ZP_02905994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MEX-5]
 gi|171098041|gb|EDT42857.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MEX-5]
          Length = 377

 Score = 44.1 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 54  ISSDSNNILEKSTDNFDLI----MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
           +++++++    + D  D +    + +PV     + +  + I  L  + +G VI L +   
Sbjct: 280 MANEADHPGNDTPDRNDPVAIGALEVPVNF--EIDTVALPIDQLAAMRQGYVIELSRTTS 337

Query: 110 E-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
           +  V +T ++Q I  GE+  + +   H GVR++++
Sbjct: 338 DMQVRLTAHSQVIGHGELVSVGD---HLGVRILQM 369


>gi|218778863|ref|YP_002430181.1| flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760247|gb|ACL02713.1| Flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
           AK-01]
          Length = 325

 Score = 44.1 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEIT 127
           +  + V++ + LG+  +    L++L KGDVI+LD+   E +   I    +   K  + 
Sbjct: 253 VQEVLVEICVELGTAVITAERLMSLRKGDVISLDQFADEPLTAKIQGVPKIAGKAGVV 310


>gi|254575131|gb|ACT68032.1| type III secretion protein [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 305

 Score = 44.1 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +PV ++ +L    + +  L ++  G  + L +   +++ I +N +  A+GE+  +E  + 
Sbjct: 225 LPVDIEFVLDGGRVTLVELEDIRPGAALPLPQDAEKNMKIYLNKKLFARGELVALE--NG 282

Query: 135 HFGVRVIEI 143
              V +  +
Sbjct: 283 ALAVEMNHV 291


>gi|149194333|ref|ZP_01871430.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
 gi|149135508|gb|EDM23987.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
          Length = 356

 Score = 44.1 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++++   ++ +   L+    V+++ +LG   + +  +++L  GD+I L++   ++V + 
Sbjct: 240 SETSSRKSRNKELRALLGGAKVELEAVLGYANLTMQEILDLVVGDIIKLNRPADDTVVVK 299

Query: 116 INNQKIAKGEITIMEEDDTHF--GVRVIEILNAQ 147
           ++ +     E  I +     F   +++ EIL  +
Sbjct: 300 VDGR-----EKFIADFGIKRFRRAIKIREILKTE 328


>gi|168334557|ref|ZP_02692713.1| flagellar motor switch protein FliM [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 327

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 11/106 (10%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           D  N S    S  +   E++T+   L+    + M+ ++G   + +   + L  GD+I LD
Sbjct: 227 DKLNTSYQFQSSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIELQIGDIIRLD 286

Query: 106 KRVGESVDITINNQKIAKGEIT----IMEEDDTHFGVRVIEILNAQ 147
             +   +D+ +       G +     +         V++ +IL+ +
Sbjct: 287 TTIDSLIDVYV-------GNVVKFKAVPGIHKNKSAVQIKQILDKE 325


>gi|78044874|ref|YP_359866.1| flagellar motor switch protein FliM [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996989|gb|ABB15888.1| flagellar motor switch protein FliM [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 335

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 29/46 (63%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            +++  ILG   +++   + +  GD++ L+++V E +++ + +QK+
Sbjct: 263 ELEVSAILGGTELRVREFLKIEVGDIVVLNRKVDEELELFVEDQKL 308


>gi|118581837|ref|YP_903087.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
           2379]
 gi|118504547|gb|ABL01030.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
           2379]
          Length = 325

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 48  DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D +   +  D   I  + +      +M  P+++ + +G+  + +  L++L+ GD I LDK
Sbjct: 227 DKLKAGMQFDLMAIDPQWSSRLSSGLMEAPLEIVVEMGNANITLGELLDLAAGDTIMLDK 286

Query: 107 RVGESVDITINNQ 119
                + + +   
Sbjct: 287 PCSSELLVKVEGT 299


>gi|152965629|ref|YP_001361413.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
           SRS30216]
 gi|151360146|gb|ABS03149.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
           SRS30216]
          Length = 314

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D       ++ P +     +   ++   S         + ++  D+ +   +IPV++
Sbjct: 191 LEVDGVAGTATLAMPLDPLSTALTAAELRVASPEELRIRRLMRDRLDDHLE---HIPVEV 247

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
            + + +  M+   ++ L  GDV+ L  R  E +++  ++  +A
Sbjct: 248 SVRMKAAQMRPDEILGLVPGDVLRLPHRADEPLEVVSSDAHVA 290


>gi|308173594|ref|YP_003920299.1| flagellar motor switching and energizing component [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606458|emb|CBI42829.1| flagellar motor switching and energizing component [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553474|gb|AEB23966.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
           TA208]
 gi|328911735|gb|AEB63331.1| flagellar motor switching and energizing component [Bacillus
           amyloliquefaciens LL3]
          Length = 332

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + SD N    + T + +  IM   + +  +LG+  + I   ++L  GD ITLDK V + +
Sbjct: 236 MQSDRNEAKPEETKSLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPL 295

Query: 113 DITINNQK 120
            + + N+ 
Sbjct: 296 TVLVGNKP 303


>gi|326791530|ref|YP_004309351.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
           5427]
 gi|326542294|gb|ADZ84153.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
           5427]
          Length = 328

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + ++ ILG   + +   + LS+ D++ LDK +   +DI + N     G      E     
Sbjct: 259 IPIKAILGKTHITVREFLELSRSDIVKLDKDIDSGLDIYVGNILKFTG---SPGEYKNKV 315

Query: 137 GVRVIEILNAQ 147
            +++  ++  +
Sbjct: 316 AIKINHVIQRE 326


>gi|28628131|gb|AAO34615.1| HrcQ [Erwinia chrysanthemi]
          Length = 413

 Score = 43.7 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM-- 79
           +  P  DT V   T   +      D  + + P +       +            P+ +  
Sbjct: 285 VTTPFDDTAVFDNTAAFDA-----DTASEASPYAEYGAPDGDNPAGALSGYALPPLTLAL 339

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
            +  G   + + +L  L+ G V+TL +   GE+  +    Q +A GE+    + +   G+
Sbjct: 340 TVRCGYLTLTLQDLQQLAPGSVLTLQQATPGEAT-LYHGEQPLALGELV---DVEGRLGL 395

Query: 139 RVI 141
           ++ 
Sbjct: 396 QIT 398


>gi|328948403|ref|YP_004365740.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
           2489]
 gi|328448727|gb|AEB14443.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
           2489]
          Length = 344

 Score = 43.7 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK-RVGESVDITINNQKIAKGEITI 128
           + + ++ +++   +GS  + I ++++L  GDVI L+  +VGE + +++ ++K    +  +
Sbjct: 253 EKLADVEMELVADIGSINVPIRDVLSLRTGDVIRLNTIKVGEPLTLSVGSKKKFYCQPGV 312

Query: 129 MEEDDTHFGVRVIEILNAQ 147
           + +      V++IE ++ Q
Sbjct: 313 VGK---KVAVQIIEKIDEQ 328


>gi|307131229|ref|YP_003883245.1| HrcQ [Dickeya dadantii 3937]
 gi|306528758|gb|ADM98688.1| HrcQ [Dickeya dadantii 3937]
          Length = 382

 Score = 43.7 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 10  YIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQ-KNDVDNISEPISSDSNNILEKSTDN 68
           +    LE   + I  P  DT     T   +     + D    + P +  S    E  T  
Sbjct: 238 FTVTELEECPVAI--PFDDTTPFDDTIPFDDAAPFETDTAPETSPHAGFSAPDGEHHTGA 295

Query: 69  FDLIMNIPVKM--QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGE 125
                  P+ +   +  G   + + +L  L+ G V+TL +   GE+  +    Q +A GE
Sbjct: 296 PSGYALPPLTLALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEAT-LYHGEQPLALGE 354

Query: 126 ITIMEEDDTHFGVRVI 141
           +    + +   G+++ 
Sbjct: 355 LV---DVEGRLGLQIT 367


>gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM
           1251]
 gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [Sulfurimonas denitrificans DSM
           1251]
          Length = 372

 Score = 43.7 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           L+    V ++ +LG+  + + ++++L  GD++ L     + V I ++ +   +G+   + 
Sbjct: 257 LLGGAKVGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADDIVTICVDGKDRFRGK---IG 313

Query: 131 EDDTHFGVRVIEILNAQ 147
                  V+V EI++ +
Sbjct: 314 LRRFRKSVQVTEIIDTE 330


>gi|51103118|gb|AAT96261.1| HrcQ-like protein [Pseudomonas viridiflava]
 gi|51103160|gb|AAT96302.1| HrcQ-like protein [Pseudomonas viridiflava]
          Length = 354

 Score = 43.7 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 46  DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            +D+I E       +  + + D      ++ + + +  G+  + +  L +L+ G V+T +
Sbjct: 256 HLDDIDEHEHHPEADSTDANEDGLQRFNDLSMALTVRAGNLSLSLGQLRSLAVGSVLTFN 315

Query: 106 K-RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
               G ++ +    + +A GE+    + +   G+++ 
Sbjct: 316 GCTPGHAM-LHHGERVLAHGELV---DVEGRLGLQIT 348


>gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM
           2228]
          Length = 335

 Score = 43.7 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           V++  +LGS  + + + + L  GDV+ LDK+V E+ ++ I   +  K E  +  +++  
Sbjct: 259 VEVDAVLGSTEITVEDFLYLQPGDVVRLDKKVEENAELKIGRSR--KYEAVVGNKNNHK 315


>gi|269796385|ref|YP_003315840.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
 gi|269098570|gb|ACZ23006.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
          Length = 315

 Score = 43.7 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
           +P    E ++Q++  +      +SD  +    +         +PV + + +    +   +
Sbjct: 212 APMRAGEGVVQRSKDELAEAAAASDRLHRTMST---------VPVDVHVRMRPVTVHPRD 262

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           +V+L+ G+VI L+  V   +D+ ++   +A G   +   +      ++++
Sbjct: 263 VVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHG---VAGNNGRQLACKIVD 309


>gi|227328492|ref|ZP_03832516.1| type III secretion protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 297

 Score = 43.7 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 66/146 (45%), Gaps = 27/146 (18%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
           +  ++  ++   ++E  SM    P  DT +++P +++  L      DN++E +       
Sbjct: 158 LSALAPYTFTVTDMETVSM----PATDTMLAAPHSDASALEYTPTSDNVTENLPP----- 208

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
                        +PV + I  GS  M ++ L +L+ G V+TL D   G++  +   +  
Sbjct: 209 -------------LPVTLHIRCGSLTMTLAKLQHLASGSVLTLRDVVPGQA-WLYHGDIA 254

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146
           +A G++    + +   G+++ +  +A
Sbjct: 255 LASGDLV---DVEGRLGLQITQCFSA 277


>gi|82795277|gb|ABB91646.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tagetis]
          Length = 135

 Score = 43.7 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101
                 D   EPI  D  +  ++ +     + ++P+ + +  G   + ++ L  L  G V
Sbjct: 34  QPGLPSDEPDEPIGPDEQDEQDEHSP-LSAVDSLPLDLTLRCGELRLTLAELRRLDAGTV 92

Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           + +         +    + +A+GE+    + D   G+++ 
Sbjct: 93  LEVSGIAPGYATLCHGERVVAEGELV---DVDGRLGLQIT 129


>gi|332280452|ref|ZP_08392865.1| surface presentation of antigens protein SpaO [Shigella sp. D9]
 gi|332102804|gb|EGJ06150.1| surface presentation of antigens protein SpaO [Shigella sp. D9]
          Length = 190

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +    +PVK++ +LG   + +  + +L    +I+L     ++++I 
Sbjct: 98  NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 157

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 158 VNGALTGYGELVEVDD---KLGVEI 179


>gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
           YUAN-3]
 gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
           YUAN-3]
          Length = 335

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S + +      +    +  IP++++ +LG+  + +   + L  GDV+ LD+ + E   + 
Sbjct: 240 SKTGDEQASRENLLRKVRQIPIELRAVLGTARITLHEALQLQVGDVVPLDQHLDEKAAVY 299


>gi|268592376|ref|ZP_06126597.1| putative surface presentation of antigens protein [Providencia
           rettgeri DSM 1131]
 gi|291312162|gb|EFE52615.1| putative surface presentation of antigens protein [Providencia
           rettgeri DSM 1131]
          Length = 310

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 62/144 (43%), Gaps = 4/144 (2%)

Query: 4   KVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSE--MLIQKNDVDNISEPISSDSNNI 61
           K+ +   ++D L  + + ++  +    ++      E  ++I++       E       + 
Sbjct: 163 KLLQTIELRDVLSIQQLQLNISVAGQVLARFQKQDEGLLMIEELVAPESEEEFVFPEEDE 222

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           +++    F+ +  + +K+  +LG   + +  L  +  G + ++ +     V +  N Q I
Sbjct: 223 MQEIVRPFN-VKEMNIKLTFVLGHSDITVDELSKMEPGYIYSIGENKEREVKVYANKQFI 281

Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145
           A+GE+  +   D   G+ +  +++
Sbjct: 282 AEGELIYIGNSDE-LGLEITHVVS 304


>gi|91782702|ref|YP_557908.1| putative type III secretion protein, FliN like [Burkholderia
           xenovorans LB400]
 gi|91686656|gb|ABE29856.1| Putative type III secretion protein, FliN like protein
           [Burkholderia xenovorans LB400]
          Length = 323

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDI 114
           +D    +E +++    I +I    + +LG+  + ++ L +L +G ++       E  V +
Sbjct: 232 TDETQPVEMTSELL-PIDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTL 290

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVI 141
                  A+GE+    + +   GVRV 
Sbjct: 291 LCQGIPFARGELI---DIEGALGVRVT 314


>gi|167464156|ref|ZP_02329245.1| flagellar motor switch protein FliM [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382382|ref|ZP_08056289.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153735|gb|EFX46110.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 332

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
            +     LGS  + +   +NLS GDVITL K V E + I I ++
Sbjct: 258 KLPFVAELGSSHITVHEFLNLSVGDVITLQKPVNEPLKIRIGDK 301


>gi|95929861|ref|ZP_01312602.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
           684]
 gi|95134157|gb|EAT15815.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
           684]
          Length = 329

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           + ++ V +   L    + +  +++L  GD++ LD  V + V + +  +
Sbjct: 256 VEDMDVAVSAQLAQITLNVREILDLRVGDILQLDCSVDQPVSVMVEGK 303


>gi|89098632|ref|ZP_01171514.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
 gi|89086594|gb|EAR65713.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
          Length = 332

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            +       E+     D I    V +   LGS  + I + + L  GDVI L++ +   + 
Sbjct: 237 QTEKKEREPEELGRLEDSIQKAQVPVSAELGSADISIQDFLMLDLGDVIELNQAIDRPLT 296

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           I I +     G+     + +    +++++
Sbjct: 297 IKIGDIPKFTGQ---PGKANKKLAIQILD 322


>gi|330957489|gb|EGH57749.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 135

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
            ++L    + + +   D +    +   E     +D         + +++  +   D    
Sbjct: 3   TEDLYQDEVEMLDEYDDQSPDHLSEQQEEQHWPDDEYAEQASGYAPADDERQDEQDESPA 62

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++ +++ +  G   + ++ L  L  G V+ +         +    Q +A+GE+    +
Sbjct: 63  LDSLELELTLRCGELRLTLAELRRLDAGSVLEVSGVAPGHATLCHGEQVVAEGELV---D 119

Query: 132 DDTHFGVRVIEILN 145
            +   G+++  ++ 
Sbjct: 120 VEGRLGLQITRLVT 133


>gi|209920318|ref|YP_002294402.1| putative type III secretion protein [Escherichia coli SE11]
 gi|209913577|dbj|BAG78651.1| putative type III secretion protein [Escherichia coli SE11]
          Length = 190

 Score = 43.3 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +    +PVK++ +LG   + +  + +L    +I+L     ++++I 
Sbjct: 98  NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 157

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 158 VNGALTGYGELVEVDD---KLGVEI 179


>gi|254255056|ref|ZP_04948373.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia dolosa AUO158]
 gi|124899701|gb|EAY71544.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia dolosa AUO158]
          Length = 311

 Score = 43.3 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + ++P+++  +L  C   +S++   + G  + L       V+IT     +A GE+    E
Sbjct: 236 VSDLPIRIDFVLHRCTTSVSDVDAFAHGTFLPLAADAERRVEITTGGTVLAVGELV---E 292

Query: 132 DDTHFGVRVIEILNAQ 147
            D   GV + ++  A+
Sbjct: 293 LDGRLGVEIHQVARAR 308


>gi|330950823|gb|EGH51083.1| type III secretion protein HrcQb [Pseudomonas syringae Cit 7]
          Length = 133

 Score = 43.3 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 29  TNVSSPTNNSEMLIQKND--VDNISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGS 85
            +   P        Q++D   ++      SD+ +  +    +   +++ + + + +  G 
Sbjct: 15  DDYEEPVPEQADQQQRDDEYAEHAFGYADSDAEHEEQSGDHHESPMLDSLELDLTLRCGE 74

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
             + ++ L  L  G ++ +         +    Q +A+GE+    + +   G+++  ++
Sbjct: 75  LRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELV---DVEGRLGLQITRLV 130


>gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
           B316]
 gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
           B316]
          Length = 327

 Score = 43.3 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            S+   N  E   D  + ++  + V ++ ILG C + +S+ V+L  GD+I LD RV   +
Sbjct: 234 FSTMQKNADEDYEDTLESMVKRVDVPVKAILGKCNVSVSDFVHLQAGDIIRLDNRVNTDM 293

Query: 113 DITINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + + N  +  A     +       + VR+  ++  +
Sbjct: 294 QVYVGNIFKFTA-----LPGTAKDKYAVRITSVVREE 325


>gi|323341356|ref|ZP_08081600.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
           25644]
 gi|323091233|gb|EFZ33861.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
           25644]
          Length = 336

 Score = 43.3 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + N+ + ++  LG   M  ++ +NL  GDVI LDK+    ++  I  +           +
Sbjct: 261 LNNVEMVIETKLGDAQMSFADFLNLEAGDVIRLDKKTTSPLETYIEGEPFFY---VKPGQ 317

Query: 132 DDTHFGVRVIE 142
            D    + +++
Sbjct: 318 KDGQLAIELLD 328


>gi|312972917|ref|ZP_07787090.1| surface presentation of antigens spaO domain protein [Escherichia
           coli 1827-70]
 gi|310332859|gb|EFQ00073.1| surface presentation of antigens spaO domain protein [Escherichia
           coli 1827-70]
          Length = 81

 Score = 43.3 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            +   ++PVK++ +LG   M +  +  L    + +L     ++++I +N      GE+  
Sbjct: 2   INSFEDLPVKIEFVLGKKIMNLYEIDELCAKRITSLLSESEKNIEIRVNGALTGYGELVE 61

Query: 129 MEEDDTHFGVRV 140
           +++     GV +
Sbjct: 62  VDD---KLGVEI 70


>gi|53716432|ref|YP_106204.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           ATCC 23344]
 gi|124382042|ref|YP_001025752.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           NCTC 10229]
 gi|126447332|ref|YP_001077837.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           NCTC 10247]
 gi|254176060|ref|ZP_04882718.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           ATCC 10399]
 gi|254359171|ref|ZP_04975443.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           2002721280]
 gi|52422402|gb|AAU45972.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           ATCC 23344]
 gi|126240186|gb|ABO03298.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           NCTC 10247]
 gi|148028358|gb|EDK86318.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           2002721280]
 gi|160697102|gb|EDP87072.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           ATCC 10399]
 gi|261826615|gb|ABM99775.2| type III secretion inner membrane protein SctQ [Burkholderia mallei
           NCTC 10229]
          Length = 645

 Score = 43.3 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +          ++    D+     +  D    +  + 
Sbjct: 523 PADRAGDLPAPSAAHSSPGSLAGLPAGLQ-----ADAPPRDARYAAPEPAD----LGEVA 573

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 574 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 630

Query: 136 FGVRV 140
            GVR+
Sbjct: 631 LGVRI 635


>gi|329889297|ref|ZP_08267640.1| type III secretion system protein [Brevundimonas diminuta ATCC
           11568]
 gi|328844598|gb|EGF94162.1| type III secretion system protein [Brevundimonas diminuta ATCC
           11568]
          Length = 209

 Score = 42.9 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 42/106 (39%), Gaps = 12/106 (11%)

Query: 43  QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
           +++ +   + P + D + +   +        + P+ + + LG   + +  L  L  G ++
Sbjct: 112 KESRMTEAAAPPAEDEHGLTPGA--------DTPIAVTVDLGETAVPLKTLTELRPGAIL 163

Query: 103 TLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            L     E  V +    Q  A+G +  + E    + V +  + + +
Sbjct: 164 PLTGLDAEMRVTLRSAGQAFARGRLVSLGEA---YAVLIDAVADPK 206


>gi|207110176|ref|ZP_03244338.1| flagellar motor switch protein FliM [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 125

 Score = 42.9 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 45  SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 104

Query: 116 INNQK 120
           ++ +K
Sbjct: 105 VHKKK 109


>gi|227357592|ref|ZP_03841945.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
 gi|227162302|gb|EEI47306.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
          Length = 309

 Score = 42.9 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + I  IP+ +  +L +  + I  L  L+ G    L       ++I  N + IA+GE+ 
Sbjct: 232 DLNSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELI 291

Query: 128 IMEE 131
            +++
Sbjct: 292 KIKD 295


>gi|293449186|ref|ZP_06663607.1| type III secretion protein SctQ [Escherichia coli B088]
 gi|291322276|gb|EFE61705.1| type III secretion protein SctQ [Escherichia coli B088]
 gi|323183416|gb|EFZ68813.1| surface presentation of antigens family protein [Escherichia coli
           1357]
          Length = 173

 Score = 42.9 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +    +PVK++ +LG   + +  + +L    +I+L     ++++I 
Sbjct: 81  NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 140

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162


>gi|197286518|ref|YP_002152390.1| type III secretion system protein [Proteus mirabilis HI4320]
 gi|194684005|emb|CAR45295.1| type III secretion system protein [Proteus mirabilis HI4320]
          Length = 309

 Score = 42.9 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           + + I  IP+ +  +L +  + I  L  L+ G    L       ++I  N + IA+GE+ 
Sbjct: 232 DLNSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELI 291

Query: 128 IMEE 131
            +++
Sbjct: 292 KIKD 295


>gi|258516873|ref|YP_003193095.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780578|gb|ACV64472.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 331

 Score = 42.9 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 45  NDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
            + + ++   +SD++ +   S   N    +++PV + ++LG     +  L  L  G  +T
Sbjct: 228 KEAEIVANNANSDNDQVAVASKLPNLTAALSLPVNLTVVLGKTLSTVEELARLEIGKKLT 287

Query: 104 LDKRVGESVDITINNQKIAKGEIT 127
           L     E V+I   +  + KG++ 
Sbjct: 288 L-PLSAECVEIYAGDTLVGKGKLI 310


>gi|308068664|ref|YP_003870269.1| flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
 gi|305857943|gb|ADM69731.1| Flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
          Length = 331

 Score = 42.9 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            +S+  +   +  D   L +    + +   LG   + ++  + LS GDVI+L+K V E +
Sbjct: 234 FTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGL 293

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            I +  +    G   ++ +      V++ EI+N 
Sbjct: 294 SIRVGEKLKFMGSPGMVRD---RVAVQIDEIVNE 324


>gi|154686048|ref|YP_001421209.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
           FZB42]
 gi|154351899|gb|ABS73978.1| FliM [Bacillus amyloliquefaciens FZB42]
          Length = 332

 Score = 42.9 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + SD N    + T   +  IM   + +  +LG+  + I   ++L  GD ITLDK V + +
Sbjct: 236 MQSDRNEAKPEETKLLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPL 295

Query: 113 DITINNQK 120
            + + N+ 
Sbjct: 296 TVLVGNKP 303


>gi|300815708|ref|ZP_07095932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 107-1]
 gi|300531637|gb|EFK52699.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
           coli MS 107-1]
          Length = 173

 Score = 42.9 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +    +PVK++ +LG   + +  + +L    +I+L     ++++I 
Sbjct: 81  NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 140

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162


>gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans
           ISDg]
 gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans
           ISDg]
          Length = 325

 Score = 42.9 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEED 132
           IPVK   +LG   + ++ L+N+ KGD+I LD+++ + + + + N  +  A     +    
Sbjct: 258 IPVK--AVLGKSSISLNELINMQKGDIIKLDRKIDDELSVYVGNIKKFTA-----LPGAS 310

Query: 133 DTHFGVRVIEILNAQ 147
              + V++  I+  +
Sbjct: 311 SDSYAVKISTIIREE 325


>gi|295706274|ref|YP_003599349.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
 gi|294803933|gb|ADF40999.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
          Length = 333

 Score = 42.9 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            SS     +++     + I +  +++   LG   + I + + L  GDVI L   V   + 
Sbjct: 237 QSSKKEPNVQEVEQLKEQINDAELQVVAELGKADISIEDFLALDAGDVIRLQTSVHNPLT 296

Query: 114 ITI 116
           I +
Sbjct: 297 IYV 299


>gi|260768787|ref|ZP_05877721.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972]
 gi|260616817|gb|EEX42002.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972]
          Length = 253

 Score = 42.9 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + +IP  + ++L    + I+++  ++ GD I L K   + +D+ + NQ + KG++ +   
Sbjct: 188 LNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY--DLLDVNVENQTLFKGQLIV--G 243

Query: 132 DDTHFGVR 139
           ++   GV+
Sbjct: 244 ENAQLGVK 251


>gi|170698359|ref|ZP_02889433.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
 gi|170136698|gb|EDT04952.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
          Length = 374

 Score = 42.9 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIP---VKMQIILGSCCMQISNLVNLSKGDVITL-DK 106
            +P  S         TD+ D  ++I    + +++ + +  M ++ L  L  G V+ L   
Sbjct: 274 EDPTMSHDTQFNAPLTDSIDTPVDISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 333

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
                V +    Q I  GE+  + +   H GVR++++
Sbjct: 334 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 367


>gi|310641555|ref|YP_003946313.1| heat shock protein hslvu, atpase subunit hslu [Paenibacillus
           polymyxa SC2]
 gi|309246505|gb|ADO56072.1| Heat shock protein HslVU, ATPase subunit HslU [Paenibacillus
           polymyxa SC2]
          Length = 332

 Score = 42.9 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            +S+  +   +  D   L +    + +   LG   + ++  + LS GDVI+L+K V E +
Sbjct: 235 FTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGL 294

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            I +  +    G   ++ +      V++ EI+N 
Sbjct: 295 SIRVGEKLKFMGSPGMVRD---RVAVQIDEIVNE 325


>gi|208434362|ref|YP_002266028.1| flagellar motor switch protein [Helicobacter pylori G27]
 gi|208432291|gb|ACI27162.1| flagellar motor switch protein [Helicobacter pylori G27]
          Length = 334

 Score = 42.9 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 218 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 277

Query: 116 INNQK 120
           ++ +K
Sbjct: 278 VHKKK 282


>gi|172064927|ref|YP_001815639.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
 gi|171997169|gb|ACB68086.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
          Length = 374

 Score = 42.9 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIP---VKMQIILGSCCMQISNLVNLSKGDVITL-DK 106
            +P  S         TD+ D  ++I    + +++ + +  M ++ L  L  G V+ L   
Sbjct: 274 EDPTMSHDTQFNAPLTDSIDTPVDISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 333

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
                V +    Q I  GE+  + +   H GVR++++
Sbjct: 334 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 367


>gi|62286914|sp|Q60235|HRCQB_PSESY RecName: Full=Type III secretion protein HrcQb
 gi|818890|gb|AAB05074.1| HrpU [Pseudomonas syringae pv. syringae]
 gi|148562539|gb|ABQ88358.1| HrcQb [Pseudomonas syringae pv. syringae]
          Length = 133

 Score = 42.9 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 29  TNVSSPTNNSEMLIQKND--VDNISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGS 85
            +   P        Q++D   ++      SD+ +  +    +   +++ + + + +  G 
Sbjct: 15  DDYEEPVPEQADQQQRDDEYAEHAFGYADSDAEHEEQSGDHHESPMLDSLELDLTLRCGD 74

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
             + ++ L  L  G ++ +         +    Q +A+GE+    + +   G+++  ++
Sbjct: 75  LRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELV---DVEGRLGLQITRLV 130


>gi|291538507|emb|CBL11618.1| flagellar motor switch protein FliM [Roseburia intestinalis XB6B4]
          Length = 326

 Score = 42.5 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITI 128
           LI   P+ ++ +LG+  + +++ + L  GD+I LD +V + + + + +  +  A     +
Sbjct: 252 LISKAPMPIKAVLGNSSISVNDFLGLQVGDIIRLDTKVDQELSVFVGSIKKFTA-----L 306

Query: 129 MEEDDTHFGVRVIEILNAQ 147
             E    + VR+  ++  +
Sbjct: 307 PGETGDDYAVRITSVIREE 325


>gi|197120188|ref|YP_002140615.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
 gi|197089548|gb|ACH40819.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
          Length = 325

 Score = 42.5 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           + +M  P+ + + +G   + +S+L++L+ GD I L+    + + + +   K   G   I 
Sbjct: 248 EELMGAPMDLSVEMGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTKKFMG---IA 304

Query: 130 EEDDTHFGVRVIEILNA 146
                +  V++   LNA
Sbjct: 305 GVSGGNKAVQITRALNA 321


>gi|226198463|ref|ZP_03794031.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|225929520|gb|EEH25539.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 432

 Score = 42.5 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 310 PADRAGDLPAPSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 360

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 361 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 417

Query: 136 FGVRV 140
            GVR+
Sbjct: 418 LGVRI 422


>gi|217422634|ref|ZP_03454137.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 576]
 gi|217394865|gb|EEC34884.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 576]
          Length = 432

 Score = 42.5 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 310 PADRAGDLPAPSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 360

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 361 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 417

Query: 136 FGVRV 140
            GVR+
Sbjct: 418 LGVRI 422


>gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
           16294]
 gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
           16294]
          Length = 366

 Score = 42.5 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           L+    V ++  LG   + + +++ L  GDVI L     + V + ++ ++  +GE   + 
Sbjct: 254 LLGGAKVNVEANLGDADLSMHDILELKVGDVIRLSSAANDIVTVAVDGKERFRGE---IG 310

Query: 131 EDDTHFGVRVIEILNAQ 147
                  + + EI+  +
Sbjct: 311 LRRFRKSISITEIIETE 327


>gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
           49176]
 gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
           49176]
          Length = 326

 Score = 42.5 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
            S     D  N  E+  +  D    IP++   +LG   + +++ VNL  GDV+ L+ +V 
Sbjct: 234 FSALQEKDDTNYGEQIEEIIDR-AQIPIR--AVLGKSVVSVNDFVNLQPGDVVRLNAKVD 290

Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           + +D+ + N K  K    +       + +R+ +++  +
Sbjct: 291 DELDVFVGNMKKFKA---LPGASSGVYALRITKVIREE 325


>gi|240145492|ref|ZP_04744093.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
 gi|257202307|gb|EEV00592.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
 gi|291536015|emb|CBL09127.1| flagellar motor switch protein FliM [Roseburia intestinalis M50/1]
          Length = 326

 Score = 42.5 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITI 128
           LI   P+ ++ +LG+  + +++ + L  GD+I LD +V + + + + +  +  A     +
Sbjct: 252 LISKAPMPIKAVLGNSSISVNDFLGLQVGDIIRLDTKVDQELSVFVGSIKKFTA-----L 306

Query: 129 MEEDDTHFGVRVIEILNAQ 147
             E    + VR+  ++  +
Sbjct: 307 PGETGDDYAVRITSVIREE 325


>gi|253702497|ref|YP_003023686.1| flagellar motor switch protein FliM [Geobacter sp. M21]
 gi|251777347|gb|ACT19928.1| flagellar motor switch protein FliM [Geobacter sp. M21]
          Length = 325

 Score = 42.5 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 28/51 (54%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           + +M  P+ + + +G   + +S+L++L+ GD I L+    + + + +   K
Sbjct: 248 EELMGAPMDLSVEMGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTK 298


>gi|109947667|ref|YP_664895.1| flagellar motor switch protein FliM [Helicobacter acinonychis str.
           Sheeba]
 gi|109714888|emb|CAJ99896.1| fliM [Helicobacter acinonychis str. Sheeba]
          Length = 354

 Score = 42.5 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 38/65 (58%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+ ++ V M ++LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNRELQALLSSVSVDMIVLLGAVELSLKEMLDLDVGDTIRLNKVANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|302392382|ref|YP_003828202.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
           5501]
 gi|302204459|gb|ADL13137.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
           5501]
          Length = 333

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 43/95 (45%), Gaps = 7/95 (7%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           +S  +   E+     D +    + +   LG+  + +++L++L  GDVI +D++  +   +
Sbjct: 238 TSRDSASSEELNKLKDRLSKAKLPVIANLGTTNITVADLLDLQPGDVIRMDQKATKEAVV 297

Query: 115 TINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + N  + I K  +       +   + +  +L+ +
Sbjct: 298 KVGNKEKFIGKPGVV-----GSKLAIEISSVLDKE 327


>gi|296162489|ref|ZP_06845280.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. Ch1-1]
 gi|295887302|gb|EFG67129.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           sp. Ch1-1]
          Length = 323

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDI 114
           +D    +E +++    I +I    + +LG+  + ++ L +L +G ++       E  V +
Sbjct: 232 TDETQPVEVTSELL-PIDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTL 290

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVI 141
                  A+GE+    + +   GVRV 
Sbjct: 291 LCQGIPFARGELI---DIEGAMGVRVT 314


>gi|186893684|ref|YP_001870796.1| type III secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|186696710|gb|ACC87339.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
           pseudotuberculosis PB1/+]
          Length = 320

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
             ++  S+P++  S             + ++P  + + +G   + +  +  L+ G  +  
Sbjct: 217 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
                  V+I +N Q + +G +   +E      VR+ +
Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 309


>gi|167467560|ref|ZP_02332264.1| type III secretion system protein [Yersinia pestis FV-1]
          Length = 270

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
             ++  S+P++  S             + ++P  + + +G   + +  +  L+ G  +  
Sbjct: 167 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 224

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
                  V+I +N Q + +G +   +E      VR+ +
Sbjct: 225 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 259


>gi|162419017|ref|YP_001608229.1| type III secretion system protein [Yersinia pestis Angola]
 gi|162351832|gb|ABX85780.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis Angola]
          Length = 294

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
             ++  S+P++  S             + ++P  + + +G   + +  +  L+ G  +  
Sbjct: 191 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 248

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
                  V+I +N Q + +G +   +E      VR+ +
Sbjct: 249 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 283


>gi|51594681|ref|YP_068872.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           32953]
 gi|51587963|emb|CAH19566.1| type III secretion system apparatus protein, SsaQ [Yersinia
           pseudotuberculosis IP 32953]
          Length = 306

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
             ++  S+P++  S             + ++P  + + +G   + +  +  L+ G  +  
Sbjct: 203 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 260

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
                  V+I +N Q + +G +   +E      VR+ +
Sbjct: 261 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 295


>gi|150260682|ref|ZP_01917410.1| type III secretion system apparatus protein [Yersinia pestis
           CA88-4125]
 gi|218927476|ref|YP_002345351.1| type III secretion system protein [Yersinia pestis CO92]
 gi|115346087|emb|CAL18955.1| type III secretion system apparatus protein [Yersinia pestis CO92]
 gi|149290090|gb|EDM40167.1| type III secretion system apparatus protein [Yersinia pestis
           CA88-4125]
          Length = 306

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
             ++  S+P++  S             + ++P  + + +G   + +  +  L+ G  +  
Sbjct: 203 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 260

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
                  V+I +N Q + +G +   +E      VR+ +
Sbjct: 261 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 295


>gi|22124443|ref|NP_667866.1| type III secretion system protein [Yersinia pestis KIM 10]
 gi|45440279|ref|NP_991818.1| type III secretion system protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108810003|ref|YP_653919.1| type III secretion system protein [Yersinia pestis Antiqua]
 gi|108813558|ref|YP_649325.1| type III secretion system protein [Yersinia pestis Nepal516]
 gi|145600948|ref|YP_001165024.1| type III secretion system protein [Yersinia pestis Pestoides F]
 gi|165926685|ref|ZP_02222517.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165936446|ref|ZP_02225014.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010408|ref|ZP_02231306.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213947|ref|ZP_02239982.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167402221|ref|ZP_02307694.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167418911|ref|ZP_02310664.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426186|ref|ZP_02317939.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229836524|ref|ZP_04456690.1| type III secretion system apparatus protein [Yersinia pestis
           Pestoides A]
 gi|229840132|ref|ZP_04460291.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842213|ref|ZP_04462368.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904048|ref|ZP_04519161.1| type III secretion system apparatus protein [Yersinia pestis
           Nepal516]
 gi|270488966|ref|ZP_06206040.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|294502342|ref|YP_003566404.1| type III secretion protein [Yersinia pestis Z176003]
 gi|21957230|gb|AAM84117.1|AE013654_6 putative type III secretion system component [Yersinia pestis KIM
           10]
 gi|45435135|gb|AAS60695.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777206|gb|ABG19725.1| type III secretion system apparatus protein [Yersinia pestis
           Nepal516]
 gi|108781916|gb|ABG15974.1| type III secretion system apparatus protein [Yersinia pestis
           Antiqua]
 gi|145212644|gb|ABP42051.1| type III secretion system apparatus protein [Yersinia pestis
           Pestoides F]
 gi|165915562|gb|EDR34171.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921308|gb|EDR38532.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990498|gb|EDR42799.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204922|gb|EDR49402.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962905|gb|EDR58926.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048402|gb|EDR59810.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054897|gb|EDR64699.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229679818|gb|EEO75921.1| type III secretion system apparatus protein [Yersinia pestis
           Nepal516]
 gi|229690523|gb|EEO82577.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696498|gb|EEO86545.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706208|gb|EEO92216.1| type III secretion system apparatus protein [Yersinia pestis
           Pestoides A]
 gi|262360422|gb|ACY57143.1| type III secretion protein [Yersinia pestis D106004]
 gi|262364372|gb|ACY60929.1| type III secretion protein [Yersinia pestis D182038]
 gi|270337470|gb|EFA48247.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|294352801|gb|ADE63142.1| type III secretion protein [Yersinia pestis Z176003]
 gi|320013866|gb|ADV97437.1| type III secretion system apparatus protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 320

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
             ++  S+P++  S             + ++P  + + +G   + +  +  L+ G  +  
Sbjct: 217 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274

Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
                  V+I +N Q + +G +   +E      VR+ +
Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 309


>gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
           6192]
 gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
           6192]
 gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM
           6578]
          Length = 341

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           + I ++ V + + +GS  +++ +++++ KGDVI L  RV E + + I N+ 
Sbjct: 254 ERISSVEVNLVVEVGSMNLKMRDILSIQKGDVIMLPTRVKEPLVLKIENRP 304


>gi|237510474|ref|ZP_04523189.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
 gi|235002679|gb|EEP52103.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
          Length = 424

 Score = 42.5 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 19/126 (15%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDN-ISEPISSDSNNILEKSTDNFDLIMNI 75
                 D P      SSP + + +       D   + P  +D              +  +
Sbjct: 306 PADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPAD--------------LGEV 351

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDT 134
            + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     
Sbjct: 352 ALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---A 408

Query: 135 HFGVRV 140
           H GVR+
Sbjct: 409 HLGVRI 414


>gi|288573016|ref|ZP_06391373.1| flagellar motor switch protein FliM [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568757|gb|EFC90314.1| flagellar motor switch protein FliM [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 334

 Score = 42.5 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + V + + LG   + + +++ L  GDVI LD  + + V + + ++    G        D 
Sbjct: 258 VKVPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRVRVGSRIKFTGR---PGTVDG 314

Query: 135 HFGVRVIEILN 145
            + V V+E+ +
Sbjct: 315 RYSVEVLEVAD 325


>gi|126458111|ref|YP_001076229.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|242311035|ref|ZP_04810052.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 1106b]
 gi|126231879|gb|ABN95292.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 1106a]
 gi|242134274|gb|EES20677.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei 1106b]
          Length = 436

 Score = 42.5 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 314 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 364

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 365 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 421

Query: 136 FGVRV 140
            GVR+
Sbjct: 422 LGVRI 426


>gi|260886644|ref|ZP_05897907.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
 gi|330839524|ref|YP_004414104.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
 gi|260863787|gb|EEX78287.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
 gi|329747288|gb|AEC00645.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
          Length = 334

 Score = 42.5 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           P+ + + LG+  M I   + L  GDV+ LD +V + + I +  + 
Sbjct: 260 PIPLIVELGTIDMTIREFLTLGFGDVLQLDTKVKDELKILVGQKP 304


>gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
           12809]
          Length = 336

 Score = 42.5 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            EK  +   ++ +  V   I LG   + I +++ L  GD++  + +    V+I  NN++ 
Sbjct: 247 GEKEDEIMHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIHFNNKQK 306

Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146
             GE+           V++ + +  
Sbjct: 307 FLGEV---GTLGVKKAVKITQFITE 328


>gi|212702681|ref|ZP_03310809.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098]
 gi|212673953|gb|EEB34436.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098]
          Length = 398

 Score = 42.5 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S+  +++S  +   S    +L       +   +G   +++  L  L  G  + L      
Sbjct: 294 SDGAAAESATVEPASVGALEL------PVVFEIGRLHLRLDELAALVPGHTLALGGETPS 347

Query: 111 S-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141
             VDI +  Q +A+G +  +       GV++ 
Sbjct: 348 PVVDIRVAGQLLAQGRLVDVGGIP---GVQIT 376


>gi|331669597|ref|ZP_08370443.1| typeIII secretion apparatus protein [Escherichia coli TA271]
 gi|331063265|gb|EGI35178.1| typeIII secretion apparatus protein [Escherichia coli TA271]
          Length = 113

 Score = 42.5 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +    +PVK++ +LG   M +  + +L    +I+L     ++++I 
Sbjct: 21  NESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPESEKNIEIR 80

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 81  VNGALTGYGELVEVDD---KLGVEI 102


>gi|271500422|ref|YP_003333447.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya
           dadantii Ech586]
 gi|270343977|gb|ACZ76742.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya
           dadantii Ech586]
          Length = 394

 Score = 42.5 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 11/124 (8%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78
            + + +P    N +S  + +            +E        +         L       
Sbjct: 266 PIPVGDPTPFDNTASYGDTTLDACNVQHTSPCAESTLPSGEPLSGYPLPPLAL------A 319

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFG 137
           + +  G   + + +L  L+ G V+TL + + GE+  +    Q +A+GE+  +E      G
Sbjct: 320 LTVRCGYLTLTLQDLQQLAPGTVLTLQQAIPGEAT-LYHGEQPLAQGELVNVE---GRLG 375

Query: 138 VRVI 141
           +++ 
Sbjct: 376 LQIT 379


>gi|254301370|ref|ZP_04968814.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
 gi|157811448|gb|EDO88618.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
          Length = 432

 Score = 42.5 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 310 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 360

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 361 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 417

Query: 136 FGVRV 140
            GVR+
Sbjct: 418 LGVRI 422


>gi|53722641|ref|YP_111626.1| type III secretion protein [Burkholderia pseudomallei K96243]
 gi|76818024|ref|YP_335836.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 1710b]
 gi|254264905|ref|ZP_04955770.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
 gi|52213055|emb|CAH39093.1| putative type III secretion protein [Burkholderia pseudomallei
           K96243]
 gi|76582497|gb|ABA51971.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 1710b]
 gi|254215907|gb|EET05292.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
          Length = 428

 Score = 42.5 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 306 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 356

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 357 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 413

Query: 136 FGVRV 140
            GVR+
Sbjct: 414 LGVRI 418


>gi|317013858|gb|ADU81294.1| flagellar motor switch protein FliM [Helicobacter pylori
           Gambia94/24]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|251789494|ref|YP_003004215.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae
           Ech1591]
 gi|247538115|gb|ACT06736.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae
           Ech1591]
          Length = 387

 Score = 42.2 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 11/123 (8%)

Query: 26  LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN------IPVKM 79
           L++  V++P +++ +       D  +   +S          DN    ++      + + +
Sbjct: 254 LEECPVTTPFDDTAVFDNTASFDAYTASEASPYAEYGAPDGDNPAGALSGYALPPLTLAL 313

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138
            +  G   + + +L  L+ G V+TL +   GE+  +    Q +A GE+    + +   G+
Sbjct: 314 TVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEAT-LYHGEQPLALGELV---DVEGRLGL 369

Query: 139 RVI 141
           ++ 
Sbjct: 370 QIT 372


>gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea
           MMB-1]
 gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea
           MMB-1]
          Length = 329

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 50  ISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           +   + SD +   ++   + +  + ++ V + + + S  + + +++    GDVI ++   
Sbjct: 227 LDAGVQSDVDEKDDRWGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEMP- 285

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            E V +  NN    +G++      +  + V++ E + AQ
Sbjct: 286 -EYVTVRANNVPTFRGKL---GSSNGKYSVQMKESIKAQ 320


>gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132]
 gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           ND132]
          Length = 325

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           + +M  PV+M + LG   +    L+ L +GD+I LD    E ++  +  
Sbjct: 250 ERLMETPVEMVVRLGRTSISGRQLLYLQEGDIILLDTDEDELLEAEVEG 298


>gi|317180688|dbj|BAJ58474.1| flagellar motor switch protein FliM [Helicobacter pylori F32]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|317177228|dbj|BAJ55017.1| flagellar motor switch protein FliM [Helicobacter pylori F16]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|39995529|ref|NP_951480.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
 gi|39982292|gb|AAR33753.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
 gi|298504529|gb|ADI83252.1| flagellar motor switch protein FliM [Geobacter sulfurreducens
           KN400]
          Length = 328

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 24/47 (51%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           ++  P+ + + +G   + +++L++L  GD I LD      + + +  
Sbjct: 253 LLEAPLDVSVEVGGAVISLNDLLSLVPGDTIMLDTPCTSDLTVKVGG 299


>gi|308182586|ref|YP_003926713.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
 gi|308064771|gb|ADO06663.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|297379637|gb|ADI34524.1| flagellar motor switch protein FliM [Helicobacter pylori v225d]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|229544404|ref|ZP_04433462.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
 gi|229324889|gb|EEN90566.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
          Length = 333

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEIT 127
           + I    V +   LG+  ++I + +NL  GD I L++ + E + + ++   + I +    
Sbjct: 252 EGIKEAKVPLTAELGTATIKIEDFLNLEIGDCIRLNQTIEEPLVVKVDKIPKFIGQ---- 307

Query: 128 IMEEDDTHFGVRVIEIL 144
              +  T   V++++I+
Sbjct: 308 -PGKQGTKMAVQILDII 323


>gi|254779108|ref|YP_003057213.1| flagellar motor switch protein FliM [Helicobacter pylori B38]
 gi|308184220|ref|YP_003928353.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
 gi|254001019|emb|CAX28963.1| Flagellar motor switch protein FliM [Helicobacter pylori B38]
 gi|308060140|gb|ADO02036.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|207092363|ref|ZP_03240150.1| flagellar motor switch protein FliM [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|317012255|gb|ADU82863.1| flagellar motor switch protein FliM [Helicobacter pylori
           Lithuania75]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|217031646|ref|ZP_03437151.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
 gi|298736644|ref|YP_003729170.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
 gi|216946846|gb|EEC25442.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
 gi|298355834|emb|CBI66706.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|15645645|ref|NP_207821.1| flagellar motor switch protein FliM [Helicobacter pylori 26695]
 gi|108562841|ref|YP_627157.1| flagellar motor switch protein FliM [Helicobacter pylori HPAG1]
 gi|2314176|gb|AAD08075.1| flagellar motor switch protein (fliM) [Helicobacter pylori 26695]
 gi|107836614|gb|ABF84483.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
 gi|317009061|gb|ADU79641.1| flagellar motor switch protein FliM [Helicobacter pylori India7]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens
           GS-15]
 gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens
           GS-15]
          Length = 327

 Score = 42.2 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           ++  P+ + + +G   + +  L+NL+ GD I LD      + + +  
Sbjct: 252 LLEAPLDLSVEVGGAIISMDELLNLTPGDTIMLDTPCNSDLVVKVGG 298


>gi|332673263|gb|AEE70080.1| flagellar motor switch protein FliM [Helicobacter pylori 83]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|317010690|gb|ADU84437.1| flagellar motor switch protein FliM [Helicobacter pylori
           SouthAfrica7]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|261837849|gb|ACX97615.1| flagellar motor switch protein [Helicobacter pylori 51]
 gi|261839264|gb|ACX99029.1| flagellar motor switch protein FliM [Helicobacter pylori 52]
 gi|317181758|dbj|BAJ59542.1| flagellar motor switch protein FliM [Helicobacter pylori F57]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|194435192|ref|ZP_03067422.1| Spa33 [Shigella dysenteriae 1012]
 gi|194416571|gb|EDX32710.1| Spa33 [Shigella dysenteriae 1012]
          Length = 293

 Score = 42.2 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130
           +I VK+  IL    M I+ L    +     L K   +    V+I +N   +  GE+  +E
Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279

Query: 131 EDDTHFGVRVIE 142
           +    +G+ +  
Sbjct: 280 DG---YGIEISS 288


>gi|15611461|ref|NP_223112.1| flagellar motor switch protein FliM [Helicobacter pylori J99]
 gi|4154924|gb|AAD05972.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
 gi|307637112|gb|ADN79562.1| flagellar motor-switch protein [Helicobacter pylori 908]
 gi|325995703|gb|ADZ51108.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997299|gb|ADZ49507.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKVANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|210134611|ref|YP_002301050.1| flagellar motor switch protein FliM [Helicobacter pylori P12]
 gi|210132579|gb|ACJ07570.1| flagellar motor switch protein [Helicobacter pylori P12]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|162460689|ref|NP_001105000.1| FDR3 [Zea mays]
 gi|14090543|gb|AAK53546.1| FDR3 [Zea mays]
          Length = 355

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITIN 117
               + ++   D + ++ + + I + +  + I  +  L  G ++ L        + +  +
Sbjct: 266 RAAPDAASSPLD-VSDVELPVHIEVVTVNLPIGQIAALQPGYILALPVALADADIRLVAH 324

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            Q +A GE+  + +     G+ +  I NA
Sbjct: 325 GQTLAFGELVAIGD---QLGLHIRRIANA 350


>gi|217033289|ref|ZP_03438720.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
 gi|216944230|gb|EEC23655.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
 gi|317179190|dbj|BAJ56978.1| flagellar motor switch protein FliM [Helicobacter pylori F30]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|188527225|ref|YP_001909912.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
 gi|188143465|gb|ACD47882.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
 gi|308061768|gb|ADO03656.1| flagellar motor switch protein FliM [Helicobacter pylori Cuz20]
 gi|308063277|gb|ADO05164.1| flagellar motor switch protein FliM [Helicobacter pylori Sat464]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 36/65 (55%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG+  + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|187734486|ref|YP_001883215.1| Spa33 [Shigella boydii CDC 3083-94]
 gi|187426982|gb|ACD06257.1| Spa33 [Shigella boydii CDC 3083-94]
          Length = 293

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130
           +I VK+  IL    M I+ L    +     L K   +    V+I +N   +  GE+  +E
Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279

Query: 131 EDDTHFGVRVIE 142
           +    +G+ +  
Sbjct: 280 DG---YGIEISS 288


>gi|32307045|gb|AAP79015.1| Spa33 [Shigella flexneri]
 gi|320182864|gb|EFW57739.1| surface presentation of antigens protein SpaO [Shigella flexneri
           CDC 796-83]
          Length = 293

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130
           +I VK+  IL    M I+ L    +     L K   +    V+I +N   +  GE+  +E
Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279

Query: 131 EDDTHFGVRVIE 142
           +    +G+ +  
Sbjct: 280 DG---YGIEISS 288


>gi|45504754|gb|AAS66845.1| YsaQ [Sodalis glossinidius]
          Length = 285

 Score = 42.2 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           VDN+  P + ++         ++     +PV ++ +L +    ++ L NL  G V  L +
Sbjct: 204 VDNVIAPSNEETQPQHTLPLFDWS---RVPVTVEFVLEANSYPLAELDNLQPGTVFDLSE 260

Query: 107 RVGESVDITINNQKIAKG 124
            V +++ I +N Q +  G
Sbjct: 261 NVEKNIKIFLNQQLVGHG 278


>gi|220929456|ref|YP_002506365.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
           H10]
 gi|219999784|gb|ACL76385.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
           H10]
          Length = 328

 Score = 42.2 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            ++  N  +E +  + +  I +  V ++ +LG   + IS  ++L  GDV+ LD  V   +
Sbjct: 235 FTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGDVLPLDTNVNGDL 294

Query: 113 DITINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +I + +  +  AK  +           +++ E+L  +
Sbjct: 295 EILVGDLPKFKAKPGV-----KKNKVAIKITEVLRRE 326


>gi|226313058|ref|YP_002772952.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
           100599]
 gi|226096006|dbj|BAH44448.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
           100599]
          Length = 331

 Score = 42.2 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            + +   +G+  + + + + L KGDVI LD+ +   + I + N     G+          
Sbjct: 258 KLPIVAEMGTATITVGDFLQLQKGDVIQLDQSIDNKLKIKVGNHLKFLGQ---PGTHKGR 314

Query: 136 FGVRVIEILNA 146
             V++ E++  
Sbjct: 315 VAVQIDEVIEE 325


>gi|82524596|ref|YP_406191.1| Spa33 [Shigella dysenteriae Sd197]
 gi|81243994|gb|ABB64703.1| Spa33 [Shigella dysenteriae Sd197]
          Length = 293

 Score = 42.2 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130
           +I VK+  IL    M I+ L    +     L K   +    V+I +N   +  GE+  +E
Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279

Query: 131 EDDTHFGVRVIE 142
           +    +G+ +  
Sbjct: 280 DG---YGIEISS 288


>gi|283850275|ref|ZP_06367564.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
 gi|283574301|gb|EFC22272.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
          Length = 326

 Score = 42.2 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + +M  PV++ +  G   +    L++L  GD+I LD  V   +D  I   +  +G
Sbjct: 250 ERLMETPVELLVRFGRSQITGRQLLSLKPGDIIMLDNDVDALLDAEIQGVRKFRG 304


>gi|324119903|gb|EGC13782.1| type III secretion protein SctQ [Escherichia coli E1167]
          Length = 134

 Score = 41.8 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +    +PVK++ +LG   + +  + +L    +I+L     ++++I 
Sbjct: 42  NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 101

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 102 VNGALTGYGELVEVDD---KLGVEI 123


>gi|302338090|ref|YP_003803296.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
           11293]
 gi|301635275|gb|ADK80702.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
           11293]
          Length = 341

 Score = 41.8 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 64  KSTDNFDLIMN----IPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINN 118
            +T+N +++ +    + + +   +G   + + ++++L  GDVI L D RVG+ + I I N
Sbjct: 242 ATTENLNILKDRLSTVAIPVVAEIGEMNLTVRDVLSLRAGDVIRLPDVRVGDPMTIKIGN 301

Query: 119 QK 120
           +K
Sbjct: 302 RK 303


>gi|323180306|gb|EFZ65858.1| surface presentation of antigens family protein [Escherichia coli
           1180]
          Length = 134

 Score = 41.8 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +    +PVK++ +LG   + +  + +L    +I+L     ++++I 
Sbjct: 42  NESKIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 101

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 102 VNGALTGYGELVEVDD---KLGVEI 123


>gi|224373367|ref|YP_002607739.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
 gi|223588573|gb|ACM92309.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
          Length = 356

 Score = 41.8 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 47/99 (47%), Gaps = 17/99 (17%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++++    ++ +   L+    ++++ +LG   + +  +++L  GD+I L++   ++V + 
Sbjct: 240 NETSGRKSRNKELRALLRGAKIELEAVLGYAELNMKQVLDLEVGDIIKLNRPADDTVIVK 299

Query: 116 INNQKIAKGEITIMEEDDTHFGVR-------VIEILNAQ 147
           ++ +          E+    FGVR       + EIL  +
Sbjct: 300 VDGR----------EKFIAEFGVRRYRRSIKIKEILKTE 328


>gi|320202507|gb|EFW77077.1| surface presentation of antigens protein SpaO [Escherichia coli
           EC4100B]
          Length = 173

 Score = 41.8 bits (97), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E           +PVK++ +LG   + +  + +L    +I+L     ++++I 
Sbjct: 81  NESEIYDENDEQMIHSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 140

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162


>gi|331664427|ref|ZP_08365333.1| typeIII secretion apparatus protein [Escherichia coli TA143]
 gi|331058358|gb|EGI30339.1| typeIII secretion apparatus protein [Escherichia coli TA143]
          Length = 113

 Score = 41.8 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           E      +   ++PVK++ +L    M +  + +L    +I+L     ++++I +N     
Sbjct: 28  ENDYQQINSFEDLPVKIEFVLEKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 87

Query: 123 KGEITIMEEDDTHFGVRV 140
            GE+  +++     GV +
Sbjct: 88  YGELVEVDD---KLGVEI 102


>gi|315180490|gb|ADT87404.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
           11218]
          Length = 108

 Score = 41.4 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + +IP  + ++L    + I+++  ++ GD I L K   + +D+ + NQ + KG++ +   
Sbjct: 43  LNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY--DLLDVNVENQTLFKGQLIV--G 98

Query: 132 DDTHFGVR 139
           ++   GV+
Sbjct: 99  ENAQLGVK 106


>gi|170737014|ref|YP_001778274.1| surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819202|gb|ACA93784.1| surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia MC0-3]
          Length = 290

 Score = 41.4 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           IPV + + + S  M++  L+ +  GDV+ + +   E+VD+ +NN
Sbjct: 225 IPVTISVHVLSKNMRLDELLRMRPGDVLPV-RLP-ETVDVLVNN 266


>gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
           BON]
 gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
           BON]
          Length = 335

 Score = 41.4 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I N+ + ++ ILG   + I + + LS GD+I LD+ V   + + + +     G+      
Sbjct: 258 IENVQIPIRAILGESTISIGDFMQLSPGDIIQLDESVDNHIKVMVGDITKFYGK---PGL 314

Query: 132 DDTHFGVRVIEILNAQ 147
              H  V++ +++  +
Sbjct: 315 RHNHMAVKITDVIYQE 330


>gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
 gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
          Length = 327

 Score = 41.4 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P    E ++ K    +I       + + +E        ++   V ++  LG+  M++ + 
Sbjct: 222 PVIVLEPVLNKIGTHDILARSKKATEDRIEDIARTLKEVL---VYLEFRLGTAAMKVEDF 278

Query: 94  VNLSKGDVITLDKRVGESVDITINN 118
           ++L +GD++TLDK+V + + + IN 
Sbjct: 279 LSLKEGDLLTLDKKVDDELPVFING 303


>gi|134300220|ref|YP_001113716.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
           MI-1]
 gi|134052920|gb|ABO50891.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
           MI-1]
          Length = 330

 Score = 41.4 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V + +++G   + + + + L  GDV+ L + + + +D+ ++ +   K     +       
Sbjct: 259 VAISVVMGEAQITVKDFLQLQVGDVLPLGRGLTQDLDMYVDEELKYK---VQVGTVGQSL 315

Query: 137 GVRVIEI 143
            V+V  +
Sbjct: 316 AVQVTSL 322


>gi|312958827|ref|ZP_07773346.1| type III secretion system rscQ [Pseudomonas fluorescens WH6]
 gi|311286597|gb|EFQ65159.1| type III secretion system rscQ [Pseudomonas fluorescens WH6]
          Length = 335

 Score = 41.4 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + + +  G+  + +  L NL  G V+ +         +   ++ I +G++    E D   
Sbjct: 268 MALTVRCGTLNLTLGELRNLGPGSVLGITGYAPGVAGLYYGDRPIGQGQLV---EVDGRL 324

Query: 137 GVRVIEIL 144
           G++V  +L
Sbjct: 325 GLQVSRVL 332


>gi|297584047|ref|YP_003699827.1| flagellar motor switch protein FliM [Bacillus selenitireducens
           MLS10]
 gi|297142504|gb|ADH99261.1| flagellar motor switch protein FliM [Bacillus selenitireducens
           MLS10]
          Length = 333

 Score = 41.4 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + +          +  +L I   P+ + + LG   + I   V+L+ GD I L++ + E +
Sbjct: 235 MQTKKKERKPGEIEALELNIKRAPLDVAVQLGQSEITIEEFVHLAVGDTIELNQSIDELL 294

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +T+      K       +   H  V+++E +  +
Sbjct: 295 RMTVGGSPKYK---VQPGKVKEHLAVQIVEDIEEE 326


>gi|303892|dbj|BAA02828.1| spa33 [Shigella flexneri]
 gi|829079|dbj|BAA09161.1| ORF21 [Shigella sonnei]
 gi|281603907|gb|ADA76890.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella
           flexneri 2002017]
          Length = 293

 Score = 41.4 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 56  SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE--- 110
           S+SN   E +  +  L    +I VK+  IL    M I+ L    +     L K   +   
Sbjct: 203 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVEN---ELFKFPDDIVK 259

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            V+I +N   +  GE+  +E+    +G+ +  
Sbjct: 260 HVNIKVNGSLVGHGELVSIEDG---YGIEISS 288


>gi|167907267|ref|ZP_02494472.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei NCTC 13177]
          Length = 217

 Score = 41.4 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 95  PADRASDLPAPSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 145

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 146 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 202

Query: 136 FGVRV 140
            GVR+
Sbjct: 203 LGVRI 207


>gi|13449099|ref|NP_085315.1| Type III secretion protein [Shigella flexneri 5a]
 gi|74314951|ref|YP_313369.1| Spa33 [Shigella sonnei Ss046]
 gi|60415911|sp|P0A1K9|SPAO_SHIFL RecName: Full=Surface presentation of antigens protein SpaO;
           AltName: Full=Spa33 protein
 gi|60415912|sp|P0A1L0|SPAO_SHISO RecName: Full=Surface presentation of antigens protein SpaO;
           AltName: Full=Spa33 protein
 gi|13310647|gb|AAK18471.1|AF348706_160 Type III secretion protein [Shigella flexneri 5a]
 gi|152794|gb|AAA26543.1| spa33 [Shigella flexneri]
 gi|12329096|emb|CAC05827.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella
           flexneri]
 gi|73858428|gb|AAZ91134.1| Spa33 [Shigella sonnei Ss046]
          Length = 293

 Score = 41.4 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 56  SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE--- 110
           S+SN   E +  +  L    +I VK+  IL    M I+ L    +     L K   +   
Sbjct: 203 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVEN---ELFKFPDDIVK 259

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            V+I +N   +  GE+  +E+    +G+ +  
Sbjct: 260 HVNIKVNGSLVGHGELVSIEDG---YGIEISS 288


>gi|326204614|ref|ZP_08194470.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
           2782]
 gi|325985181|gb|EGD46021.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
           2782]
          Length = 328

 Score = 41.4 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            ++  N  +E +  + +  I +  V ++ +LG   + IS  ++L  GDV+ LD  V   +
Sbjct: 235 FTNVENEKIEHNKSDIEFKIEHTYVPVRAVLGKTSISISEFLDLQSGDVLPLDTNVNGDL 294

Query: 113 DITINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           +I + +  +  AK  +           V++ E+L  +
Sbjct: 295 EILVGDLPKFNAKPGV-----KKNKVAVKITEVLRRE 326


>gi|238757864|ref|ZP_04619046.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
           35236]
 gi|238703849|gb|EEP96384.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
           35236]
          Length = 269

 Score = 41.4 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 53  PISSDSNNILEKSTDNFD-------LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            +  D  ++L +  D+ D        I ++P  + + +G   + +  L  L  GD++ + 
Sbjct: 158 ELVQDVESLLMEERDDVDNPPPLAVSIDDLPQILLVEVGQVDISLGALRALRVGDLLPVA 217

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
            + G  V + +N + +  GE+         F VR+ 
Sbjct: 218 AQFGGEVKLRLNGRVLGAGELV---GCGDSFLVRIN 250


>gi|115360603|ref|YP_777740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
 gi|115285931|gb|ABI91406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
          Length = 326

 Score = 41.4 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 51  SEPISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DK 106
            +P  S         TD+ D    I  + + +++ + +  M ++ L  L  G V+ L   
Sbjct: 226 EDPTMSHDTQFNAPLTDSIDTPVEISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 285

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
                V +    Q I  GE+  + +   H GVR++++
Sbjct: 286 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 319


>gi|91791431|ref|YP_561082.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
 gi|91713433|gb|ABE53359.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
          Length = 103

 Score = 41.4 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 64  KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           ++  +  ++    +++ + +G   M IS L  L +  ++ L ++V    ++   +  IAK
Sbjct: 22  ETPLDLAILEQTKIELNVNIGDVSMSISELKELKENSIVKLAQKVDSEFELKWKDVVIAK 81

Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147
           G +  ++E   +  + + ++ + +
Sbjct: 82  GRLVAVDE---YLALEITQVTSNE 102


>gi|315586408|gb|ADU40789.1| flagellar motor switch protein FliM [Helicobacter pylori 35A]
          Length = 354

 Score = 41.0 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 35/65 (53%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++N+   ++ +   L+  + V M + LG   + +  +++L  GD I L+K   + V + 
Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGVVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297

Query: 116 INNQK 120
           ++ +K
Sbjct: 298 VHKKK 302


>gi|167820507|ref|ZP_02452187.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 91]
          Length = 199

 Score = 41.0 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 77  PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 127

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 128 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 184

Query: 136 FGVRV 140
            GVR+
Sbjct: 185 LGVRI 189


>gi|323388135|gb|ADX60331.1| type III secretion protein RscQab [Pseudomonas fluorescens]
          Length = 330

 Score = 41.0 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 29  TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF--DLIMNIPVKMQIILGSC 86
            + S P   + + I++  VD          + + E   D F  +    + + + +  G+ 
Sbjct: 213 DDESGPLCLTLVSIEETSVDEDFATSQYPGDELDEPVVDVFGHEPFDELNMALTVRCGTL 272

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            + +  L NL+ G V+ +         +   ++ I +G++    E D   G+++  ++ +
Sbjct: 273 NLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLV---EVDGRLGLQLSRVIFS 329

Query: 147 Q 147
           +
Sbjct: 330 R 330


>gi|167584012|ref|ZP_02376400.1| type III secretion inner membrane protein SctQ [Burkholderia
           ubonensis Bu]
          Length = 144

 Score = 41.0 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
           + ++ + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  + 
Sbjct: 68  LGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG 127

Query: 131 EDDTHFGVRV 140
               H GVR+
Sbjct: 128 ---AHLGVRI 134


>gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198]
 gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198]
          Length = 357

 Score = 41.0 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 34/64 (53%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S++++   ++ +   LI    + +   LG   + +  ++ L +GD+I LD+   ++V + 
Sbjct: 238 SETSSKKSRNKELQALIGGAGISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVA 297

Query: 116 INNQ 119
           I+ +
Sbjct: 298 IDGK 301


>gi|331005464|ref|ZP_08328843.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
 gi|330420740|gb|EGG95027.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
          Length = 255

 Score = 41.0 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT-INNQKIAKGEITIMEEDDT 134
            +   +  G+  + +  ++++  GDVI L K++G+SV    ++ +K+  G + +   +D 
Sbjct: 190 KISFSVEYGNASLTVDEIMSIKTGDVIRLTKKIGDSVSAHNLSGEKLFDGSLGV---NDN 246

Query: 135 HFGVRVI 141
           +F ++V 
Sbjct: 247 NFAIKVT 253


>gi|307310519|ref|ZP_07590167.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|306909414|gb|EFN39909.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
          Length = 113

 Score = 41.0 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +    +PVK++ +LG   + +  + +L    +I+L     ++++I 
Sbjct: 21  NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 80

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 81  VNGALTGYGELVEVDD---KLGVEI 102


>gi|227876753|ref|ZP_03994862.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35243]
 gi|269976280|ref|ZP_06183276.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
           28-1]
 gi|306817700|ref|ZP_07451442.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35239]
 gi|307699817|ref|ZP_07636868.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
 gi|227842650|gb|EEJ52850.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35243]
 gi|269935609|gb|EEZ92147.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
           28-1]
 gi|304649514|gb|EFM46797.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35239]
 gi|307614855|gb|EFN94073.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
          Length = 307

 Score = 41.0 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDV--DNISEPISSDSNNILEKSTDNFDLIMN 74
             ++     + D ++  P       I K D   D  SE    ++  + ++  DN +    
Sbjct: 179 PITLTTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLE---E 235

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           IPV++ +      +    L  L+ GD + L       +D+ +++  +A
Sbjct: 236 IPVEVAVRFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILA 283


>gi|86157791|ref|YP_464576.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774302|gb|ABC81139.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 334

 Score = 41.0 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 39  EMLIQKNDVDNISEPISSD---SNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLV 94
            ++I    V++  + +SS    S    E+  D     +  +PV+++ + G   +  + L+
Sbjct: 216 HLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLL 275

Query: 95  NLSKGDVITLDKRVGESVDITINNQ 119
            L++G+V+ LD   G  V + +  +
Sbjct: 276 ELAEGEVLLLDTDEGRPVPVVVQGR 300


>gi|15606467|ref|NP_213847.1| hypothetical protein aq_1238 [Aquifex aeolicus VF5]
 gi|2983683|gb|AAC07248.1| putative protein [Aquifex aeolicus VF5]
          Length = 182

 Score = 41.0 bits (95), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           +  I E +S    +  E+  +    ++ +PV ++++L     +++ +VN+ KG VI   K
Sbjct: 89  LKEIKEELSMRKPDPKERE-ELLSALLKVPVNLEVLLFKRKDKLNKVVNMGKGFVILTGK 147

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
              E V++ +  +    G   I+ E +    V++ +IL
Sbjct: 148 TPQEEVEVLVQGRLKFLG---ILGEKNGKRAVKISKIL 182


>gi|167573309|ref|ZP_02366183.1| type III secretion system protein BsaV [Burkholderia oklahomensis
           C6786]
          Length = 320

 Score = 41.0 bits (95), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 41  LIQKNDVDNISEP-ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
            + ++ +D++ +   ++++       T + D +   PV ++ +L    + ++ L +   G
Sbjct: 213 PLSEDAIDDLHDERAAAEAPQDAPPPTFDIDAL---PVTLEFVLQDERVTVAQLASCHPG 269

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEED 132
            V+ +    GE V I  N +    GE+  + E 
Sbjct: 270 LVLPVRGAPGE-VTIRANGRPFGCGELIQVGEQ 301


>gi|46562140|ref|YP_009161.1| type III secretion system protein YopQ family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447677|gb|AAS94343.1| type III secretion system protein, YopQ family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235511|gb|ADP88364.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris RCH1]
          Length = 484

 Score = 41.0 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
            P S  S+    +     D    + V +   L    M++++L  L+ G    L       
Sbjct: 335 TPESPMSDQQTPEVPAGLDTAA-LEVDIVFELERRTMKLNDLAALAPGYTFALGTDPLAP 393

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           V + +  + I +G +    + D   GV+V+ + +A
Sbjct: 394 VTLRVQGRNIGRGRLV---DLDGTPGVQVLHLESA 425


>gi|197122895|ref|YP_002134846.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
 gi|220917687|ref|YP_002492991.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196172744|gb|ACG73717.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
 gi|219955541|gb|ACL65925.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 338

 Score = 41.0 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 39  EMLIQKNDVDNISEPISSD---SNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLV 94
            ++I    V++  + +SS    S    E+  D     +  +PV+++ + G   +  + L+
Sbjct: 220 HLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLL 279

Query: 95  NLSKGDVITLDKRVGESVDITINNQ 119
            L++G+V+ LD   G  V + +  +
Sbjct: 280 ELAEGEVLLLDTDEGRPVPVVVQGR 304


>gi|31983540|ref|NP_858285.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella
           flexneri 2a str. 301]
 gi|18462532|gb|AAL72304.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella
           flexneri 2a str. 301]
          Length = 248

 Score = 41.0 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 56  SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE--- 110
           S+SN   E +  +  L    +I VK+  IL    M I+ L    +     L K   +   
Sbjct: 158 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVEN---ELFKFPDDIVK 214

Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            V+I +N   +  GE+  +E+    +G+ +  
Sbjct: 215 HVNIKVNGSLVGHGELVSIEDG---YGIEISS 243


>gi|254253711|ref|ZP_04947028.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia dolosa AUO158]
 gi|124898356|gb|EAY70199.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia dolosa AUO158]
          Length = 388

 Score = 41.0 bits (95), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 51  SEPISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DK 106
            +P  S         TD+ D    I  + + +++ + +  M ++ L  L  G V+ L   
Sbjct: 288 EDPTMSHDTQFNAPLTDSIDTPVEISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 347

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
                V +    Q I  GE+  + +   H GVR++++
Sbjct: 348 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 381


>gi|163783035|ref|ZP_02178030.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881715|gb|EDP75224.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
          Length = 322

 Score = 41.0 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 40  MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99
           + I    +D I + + +      +        +M  PV ++ IL +  M +  L+ + +G
Sbjct: 213 LAIPMKTIDPIKDILRTADTESGDFRDVILSNLMGTPVLLEAILPTLVMNVHELLEMKEG 272

Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           D I LD R  +S+ + +    + KG   I+ E      V++   +
Sbjct: 273 DFIPLDPRATDSITVKVAGVPMFKG---ILGESAGRKAVKIKSFV 314


>gi|221639474|ref|YP_002525736.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|221160255|gb|ACM01235.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
          Length = 323

 Score = 41.0 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 18/116 (15%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
            N E  S  I  PLQ     S    S M     D          D  +  EK       I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125
           ++IP+ +   L    + +  L+ +  GDV+ +   + E+V + +  Q I   A GE
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEAVSLLVEGQPIFEAAPGE 307


>gi|167915629|ref|ZP_02502720.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 112]
          Length = 238

 Score = 41.0 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 116 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 166

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 167 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 223

Query: 136 FGVRV 140
            GVR+
Sbjct: 224 LGVRI 228


>gi|167923472|ref|ZP_02510563.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei BCC215]
          Length = 209

 Score = 41.0 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 87  PADRAGDLPADSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 137

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 138 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 194

Query: 136 FGVRV 140
            GVR+
Sbjct: 195 LGVRI 199


>gi|94987608|ref|YP_595541.1| putative translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731857|emb|CAJ55220.1| putative translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 368

 Score = 41.0 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI-MNIPVKMQIILGS 85
            +   +      E   +  +         ++S     + +   D+  +++PV  ++    
Sbjct: 254 PEDQGNGGEQFVENHTEAPNSHGQQRTARANSGRQSGQQSSGIDVSGLDLPVVFELE--R 311

Query: 86  CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
             M + N+  L+ G    L   V   V + +N + I  G +    + +   GV+V++++
Sbjct: 312 QFMTVQNIGLLAPGYTFALSVDVQAPVTLRVNGKAIGVGRLV---DLNGSLGVQVVQVM 367


>gi|77463631|ref|YP_353135.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
 gi|126462463|ref|YP_001043577.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|77388049|gb|ABA79234.1| Flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
 gi|126104127|gb|ABN76805.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 323

 Score = 41.0 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 18/116 (15%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
            N E  S  I  PLQ     S    S M     D          D  +  EK       I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125
           ++IP+ +   L    + +  L+ +  GDV+ +   + E+V + +  Q I   A GE
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEAVSLLVEGQPIFEAAPGE 307


>gi|296531735|ref|ZP_06894561.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
 gi|296267934|gb|EFH13735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
          Length = 353

 Score = 41.0 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           V++  ++ S  +  S + +   G V  LDKR  + VD+      + + 
Sbjct: 274 VELTAVIESRTVPFSEVASWQPGSVFVLDKRQEDPVDVFCQGLMVCRA 321


>gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
 gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
          Length = 333

 Score = 40.6 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           + + PV M+++LG   M + N + L  GD+I LD +  + + +++
Sbjct: 258 LHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSV 302


>gi|323490151|ref|ZP_08095371.1| flagellar motor switch protein FliM [Planococcus donghaensis
           MPA1U2]
 gi|323396199|gb|EGA89025.1| flagellar motor switch protein FliM [Planococcus donghaensis
           MPA1U2]
          Length = 327

 Score = 40.6 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           + +    ++++ +LG   ++  + +NL KGDVI LD+     V + ++N+     +  + 
Sbjct: 247 EKLHGTKMEIKAVLGQSMIEFGDFLNLKKGDVIRLDESYDSPVTLQVDNKLKFYAQPGV- 305

Query: 130 EEDDTHFGVRVIEI 143
                   ++V E+
Sbjct: 306 --SKGRMAIQVTEV 317


>gi|298530627|ref|ZP_07018029.1| flagellar motor switch protein FliM [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510001|gb|EFI33905.1| flagellar motor switch protein FliM [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 325

 Score = 40.6 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           + ++ IPV   + +G   +    L+N+  GD++ LD    + +   +    
Sbjct: 250 ERLLEIPVDFNVTMGKTQITGRQLLNMEAGDILMLDTDQEDLLKAYVQGVL 300


>gi|120586839|ref|YP_961184.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris subsp. vulgaris DP4]
 gi|120564253|gb|ABM29996.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris DP4]
          Length = 475

 Score = 40.6 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111
            P S  S+    +     D    + V +   L    M++++L  L+ G    L       
Sbjct: 326 TPESPMSDQQTPEVPAGLDTAA-LEVDIVFELERRTMKLNDLAALAPGYTFALGTDPLAP 384

Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           V + +  + I +G +    + D   GV+V+ + +A
Sbjct: 385 VTLRVQGRNIGRGRLV---DLDGTPGVQVLHLESA 416


>gi|302185359|ref|ZP_07262032.1| type III secretion system apparatus protein YscQ/HrcQ [Pseudomonas
           syringae pv. syringae 642]
 gi|256259401|gb|ACU65038.1| HrcQ [Pseudomonas syringae pv. syringae]
          Length = 393

 Score = 40.6 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 27  QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86
           ++          +  ++  D           S  + E  T  F+   ++ + + +  G  
Sbjct: 279 EEDAGLDDDRYEDDAVEDEDGHEHHADPHPSSGPVSETPTGAFN---DLALPLTLRCGQI 335

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
            + +  L  L  G V+ +         +    +++A+GE+    + +   G++++++
Sbjct: 336 NLTLGELATLVPGTVLEVPGIKPGLAGLYYGERRLAQGELV---DVEGRLGLQILQV 389


>gi|15895484|ref|NP_348833.1| flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
 gi|15025214|gb|AAK80173.1|AE007722_2 Flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
 gi|325509631|gb|ADZ21267.1| Flagellar switch protein FliM [Clostridium acetobutylicum EA 2018]
          Length = 331

 Score = 40.6 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 55  SSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
             +   I+++S       +++  V +   LG   + + + + LS GDVITL+ +  + V 
Sbjct: 236 QENDEEIVKESRVELRKRLDVVEVPVIAKLGQTEITVEDFLRLSIGDVITLNSKCSDPVP 295

Query: 114 ITI 116
           + I
Sbjct: 296 VYI 298


>gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas
           mendocina NK-01]
 gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas
           mendocina NK-01]
          Length = 279

 Score = 40.6 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
                 ++ ++ + I  +PV++  ++ S  M +S ++ L  GD++ + + + E  D+ IN
Sbjct: 195 PPAPAAQAGNSLNQIRQLPVRLDCVVASLQMPLSQVLALRPGDILPM-RLL-ERCDVQIN 252

Query: 118 NQKIAKGEITIMEEDDTHF 136
            QK+ +G   I E+D + F
Sbjct: 253 QQKLFRG--AIFEDDGSLF 269


>gi|167724362|ref|ZP_02407598.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei DM98]
          Length = 216

 Score = 40.6 bits (94), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +   +  +   + P   D+     +  D    +  + 
Sbjct: 94  PADRAGDLPADSAAHSSPGSLAGL---QAGLQADASPR--DARYAAPEPAD----LGEVA 144

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 145 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 201

Query: 136 FGVRV 140
            GVR+
Sbjct: 202 LGVRI 206


>gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
 gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
          Length = 331

 Score = 40.6 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           + + PV M+++LG   M + N + L  GD+I LD +  + + +++
Sbjct: 257 LHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLILSV 301


>gi|2315249|emb|CAA74715.1| flagellar switch protein [Rhodobacter sphaeroides]
          Length = 323

 Score = 40.6 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 18/116 (15%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
            N E  S  I  PLQ     S    S M     D          D  +  EK       I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125
           ++IP+ +   L    + +  L+ +  GDV+ +   + E++ + +  Q I   A GE
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEALSLLVEGQPIFEAAPGE 307


>gi|332298232|ref|YP_004440154.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
           12168]
 gi|332181335|gb|AEE17023.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
           12168]
          Length = 344

 Score = 40.6 bits (94), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
           + + ++ + +   +GS  + I +++ L  GD++ L + R+ + + ++I N+K
Sbjct: 252 EKLSDVDMDVVAEIGSVSLPIRDVLALRVGDIVRLSNVRITDPITLSIGNKK 303


>gi|126653737|ref|ZP_01725655.1| flagellar motor switch protein M [Bacillus sp. B14905]
 gi|126589701|gb|EAZ83837.1| flagellar motor switch protein M [Bacillus sp. B14905]
          Length = 331

 Score = 40.6 bits (94), Expect = 0.075,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 23/41 (56%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
            + + + LG   + I + + +  GDVI L++++ + + + +
Sbjct: 259 KLPLSVELGLTDITIEDFLTMQVGDVIQLEQKINDPLLLKV 299


>gi|262276388|ref|ZP_06054197.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
 gi|262220196|gb|EEY71512.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
          Length = 353

 Score = 40.6 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D       S    D +M++ V +
Sbjct: 205 IELDGGGGDFHVVMPYSMVEPIRELLDAGIQSDKMDTDKRW----SKALQDEVMDVEVSL 260

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
              L    + + +L+ +  GDVI +  ++ ++  + I +    +G++    + + +  ++
Sbjct: 261 TAKLLETTLSLRDLMEMEAGDVIPV--KMPDACTVYIEDLPTFRGKL---GQSNDNLAIK 315

Query: 140 VIE 142
           + +
Sbjct: 316 ITD 318


>gi|167850342|ref|ZP_02475850.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei B7210]
          Length = 227

 Score = 40.6 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 13/119 (10%)

Query: 23  DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82
           D P      SSP + + +            P  +   +    + +  D +  + + + + 
Sbjct: 111 DLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVALPVHVE 161

Query: 83  LGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H GVR+
Sbjct: 162 IDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLGVRI 217


>gi|117928062|ref|YP_872613.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
           11B]
 gi|117648525|gb|ABK52627.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
           11B]
          Length = 314

 Score = 40.6 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           ++  + P   D  ++LE+S       + ++ +++ +      +    L+NLS GDV++L 
Sbjct: 212 LEAAASPKRGDRRDLLERSQAALRARLEDVEIEVAVQFPYVALTPHELLNLSVGDVLSLR 271

Query: 106 KRVGESVDITINNQKIAKG 124
                 + IT      A  
Sbjct: 272 HPTNAPLLITAEGIPFAYA 290


>gi|118592625|ref|ZP_01550015.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614]
 gi|118434676|gb|EAV41327.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614]
          Length = 360

 Score = 40.6 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDTH 135
           +   LGS  +  + + N   G +  L   + ES   V +  N+  IA+G++  + +    
Sbjct: 292 LSFRLGSANLSATEIANWRPGAIANLPDSLNESNTEVKVVANDTTIAQGDLVRVGD---R 348

Query: 136 FGVRVIEI 143
            GVR+  I
Sbjct: 349 VGVRLSRI 356


>gi|303248092|ref|ZP_07334357.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
           JJ]
 gi|302490491|gb|EFL50399.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
           JJ]
          Length = 326

 Score = 40.6 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + +M  PV+M +  G   +    L++L  GD+I LD  V   ++  +   +  +G
Sbjct: 250 ERLMETPVEMLVRFGRSQVTGRQLLSLKPGDIIMLDNDVDALLEAEVQGVRKFRG 304


>gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus
           C3-41]
 gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
          Length = 331

 Score = 40.2 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 23/41 (56%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
            + + + LG   + I + + +  GDVI L++++ + + + +
Sbjct: 259 KLPLSVELGLTDITIEDFLTMQIGDVIQLEQKINDPLLLKV 299


>gi|170026116|ref|YP_001722621.1| type III secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169752650|gb|ACA70168.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
           pseudotuberculosis YPIII]
          Length = 320

 Score = 40.2 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P  + + +G   + +  +  L+ G  +         V+I +N Q + +G +   +E  
Sbjct: 244 DLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDE-- 301

Query: 134 THFGVRVIE 142
               VR+ +
Sbjct: 302 -QLVVRIAQ 309


>gi|153950005|ref|YP_001402769.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152961500|gb|ABS48961.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 320

 Score = 40.2 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           ++P  + + +G   + +  +  L+ G  +         V+I +N Q + +G +   +E  
Sbjct: 244 DLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDE-- 301

Query: 134 THFGVRVIE 142
               VR+ +
Sbjct: 302 -QLVVRIAQ 309


>gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 322

 Score = 40.2 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
              +  + +   + L    M +  L+NL  G  I L+ +  +S+++ +  + 
Sbjct: 240 LKKLSKVELNFTLELSRFTMLVEELLNLEVGSDIILNVKKDDSINLMVEGKP 291


>gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
 gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
 gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
          Length = 353

 Score = 40.2 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 36/64 (56%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           SD+++   ++ +   LI    V +   LG+  + +  +++L  GD++ LD+   +++ ++
Sbjct: 238 SDTSSKKSRNKELQALIAGANVVVSGYLGNATLSLKEVLDLQVGDIVRLDRAADDTILVS 297

Query: 116 INNQ 119
           ++ +
Sbjct: 298 VDGR 301


>gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
           1]
 gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
           1]
          Length = 365

 Score = 40.2 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           L+    V ++  LG   + + ++++L  GDV+ L     + V ++I+ ++  +G+   + 
Sbjct: 254 LLGGAKVNVEANLGDAELTMRDVLDLQIGDVVRLSSAANDIVTVSIDGKERFRGQ---IG 310

Query: 131 EDDTHFGVRVIEILNAQ 147
                  +++ EI++ +
Sbjct: 311 LRRFRKSIQISEIIDTE 327


>gi|257457606|ref|ZP_05622773.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
           35580]
 gi|257444992|gb|EEV20068.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
           35580]
          Length = 344

 Score = 40.2 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
           + +  + + +   +GS  + + +++NL  GDV+ L D RVG    +++ ++K
Sbjct: 252 EKLSTVDMDVVAEVGSLKLPVRDVLNLRAGDVVRLTDTRVGHPFTLSVGSRK 303


>gi|332558487|ref|ZP_08412809.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
 gi|3435105|gb|AAC32319.1| flagellar switch protein [Rhodobacter sphaeroides]
 gi|332276199|gb|EGJ21514.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
          Length = 323

 Score = 40.2 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 18/116 (15%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
            N E  S  I  PLQ     S    S M     D          D  +  EK       I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125
           ++IP+ +   L    + +  L+ +  GDV+ +   + E++ + +  Q I   A GE
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEALSLLVEGQPIFEAAPGE 307


>gi|238927453|ref|ZP_04659213.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
           43531]
 gi|238884735|gb|EEQ48373.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
           43531]
          Length = 333

 Score = 40.2 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            S D  +  E+  +    I    V   + LG   M I+  + L  GDV+ LD    + + 
Sbjct: 238 ASMDRESSPEQVEELQRKIERTSVPFTVQLGEIEMTINEFLTLGFGDVLQLDTLTKDELV 297

Query: 114 ITI--NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
             +  N + +A+              V++  ++  +
Sbjct: 298 CYVGSNPKFLAR-----PGTAGKRMAVQISGVIEGE 328


>gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
           16841]
 gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
           16841]
          Length = 326

 Score = 40.2 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITI 128
           LI    + ++ +LG+  + + + VNL  GD+I LD  V + ++I + N  +  A     +
Sbjct: 252 LISKAKIPVKAVLGNSTISVDDFVNLQVGDIIRLDSGVNQDLNIFVGNIKKFTA-----L 306

Query: 129 MEEDDTHFGVRVIEILNAQ 147
                 ++ VRV  ++  +
Sbjct: 307 PGAVGDNYAVRVTSVVREE 325


>gi|189025946|ref|YP_001933718.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
           pallidum SS14]
 gi|189018521|gb|ACD71139.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
          Length = 344

 Score = 40.2 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
           D +  + + +   +GS  + + +++ L  GD+I L D  VG+   ++I N+K
Sbjct: 252 DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRK 303


>gi|14422436|dbj|BAB60843.1| epaO2 [Escherichia coli]
          Length = 173

 Score = 40.2 bits (93), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           ++S    E      +    +PVK++ +L    M +  +  L    +I+L     ++++I 
Sbjct: 81  NESEIYDENDEQMINSFEELPVKIEFVLVKKIMNLYEIDELCAKRIISLLPESEKNIEIR 140

Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140
           +N      GE+  +++     GV +
Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162


>gi|15639708|ref|NP_219158.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|6225364|sp|P74927|FLIM_TREPA RecName: Full=Flagellar motor switch protein FliM
 gi|2196898|gb|AAB61256.1| flagellar switch protein [Treponema pallidum]
 gi|3323023|gb|AAC65687.1| flagellar motor switch protein (fliM) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|291060085|gb|ADD72820.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 344

 Score = 40.2 bits (93), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
           D +  + + +   +GS  + + +++ L  GD+I L D  VG+   ++I N+K
Sbjct: 252 DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRK 303


>gi|152997440|ref|YP_001342275.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
 gi|150838364|gb|ABR72340.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
          Length = 324

 Score = 40.2 bits (93), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 50  ISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           +   + SD +   ++   + +  + +I V++ + + +  + +  ++    GD+I ++   
Sbjct: 228 LDAGVQSDVDEKDDRWGKSLEQDVKDIDVRLSVSVANRKISLGEVLKFKAGDIIPIEMP- 286

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            E V +  N     KG++ +  E    + V++ E   A+
Sbjct: 287 -EFVTVRANGVPTFKGKLGVSNE---RYSVQMQESFKAK 321


>gi|297530595|ref|YP_003671870.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
 gi|297253847|gb|ADI27293.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
          Length = 334

 Score = 40.2 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
            + +   LG+  + ++  + L  GDVI L++ + E + + I
Sbjct: 260 KLPIIAELGTAVITVNEFLQLEAGDVIQLEQSIHEPLVVKI 300


>gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
 gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
          Length = 321

 Score = 40.2 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
               + +S ++ + I  +PV++  ++ S  M ++ ++ L  GD++ + + + E  D+ IN
Sbjct: 237 PPAPVAQSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPM-RLL-ERCDVQIN 294

Query: 118 NQKIAKGEITIMEEDDTHF 136
            QK+ +G   I E+D + F
Sbjct: 295 QQKLFRG--AIFEDDGSLF 311


>gi|119714993|ref|YP_921958.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
 gi|119535654|gb|ABL80271.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
          Length = 335

 Score = 40.2 bits (93), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 48  DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
                P+S        ++     D    +PV++ + L    +    L  L  GD + L  
Sbjct: 237 AAAPAPVSERERAQRAQAAAELADQFQRVPVEVAVSLRPTTLSPMELAALRPGDALRLRH 296

Query: 107 RVGESVDITINNQKIAKG 124
                +++ ++    A  
Sbjct: 297 PAAAPLEVVVDGTCFAHA 314


>gi|299534775|ref|ZP_07048105.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
 gi|298729863|gb|EFI70408.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
          Length = 331

 Score = 40.2 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 22/40 (55%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           + + + LG   + I + + +  GDVI LD+++   + + +
Sbjct: 260 LPLSVELGLTDITIEDFLTMQVGDVIQLDQKIEAPLLLKV 299


>gi|239906894|ref|YP_002953635.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
 gi|239796760|dbj|BAH75749.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
          Length = 326

 Score = 40.2 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           + +M  PV++ +  G   +    L++L  GD++ L+  V E ++  I  
Sbjct: 250 ERLMETPVELLVRFGRSQITGRQLLSLKPGDILMLENDVDELLEAEIQG 298


>gi|56419765|ref|YP_147083.1| flagellar motor switch protein FliM [Geobacillus kaustophilus
           HTA426]
 gi|261419430|ref|YP_003253112.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
 gi|319766245|ref|YP_004131746.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
 gi|56379607|dbj|BAD75515.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
 gi|261375887|gb|ACX78630.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
 gi|317111111|gb|ADU93603.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
          Length = 334

 Score = 40.2 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
            + +   LG+  + ++  + L  GDVI L++ + E + + I
Sbjct: 260 KLPIIAELGTAVITVNEFLQLEAGDVIQLEQSIHEPLVVKI 300


>gi|322432987|ref|YP_004210236.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321165214|gb|ADW70918.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 100

 Score = 40.2 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 40/115 (34%), Gaps = 16/115 (13%)

Query: 30  NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89
             +SP + ++    +  +    +P        L             P  + + +      
Sbjct: 2   GTASPVSTTQQAAPQATIAVFKDPDPGKLVPWL-------------PCTLALEVSVVGFT 48

Query: 90  ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           + +L+ L+KG ++         + + +N   +A  E  ++ E       R+ +++
Sbjct: 49  VGSLLKLTKGSLVQTSCHQSTDIPLHVNGILMAWTEFEVVGE---RLAARITDLV 100


>gi|229166617|ref|ZP_04294369.1| Flagellar motor switch protein [Bacillus cereus AH621]
 gi|228616871|gb|EEK73944.1| Flagellar motor switch protein [Bacillus cereus AH621]
          Length = 74

 Score = 40.2 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 32/53 (60%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +IP+ +   +G+   +I +L++++KG +  L+     +V + + N++I  G+I
Sbjct: 6   DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSAKNTVRLMLENEEIGTGKI 58


>gi|261407972|ref|YP_003244213.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
 gi|329929322|ref|ZP_08283075.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
 gi|261284435|gb|ACX66406.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
 gi|328936691|gb|EGG33134.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
          Length = 332

 Score = 40.2 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           IS    ++ E+       +    + +   LG   + +S  + LS GDVI+L+K + + + 
Sbjct: 236 ISEKKASVPEEVDALKQRVSKAKLPIVAELGVSQLTVSEFLGLSVGDVISLNKPMHDGLS 295

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144
           I + ++    G    +++      V++ EI+
Sbjct: 296 IKVGDKLKFIGSPGTIKD---RVAVQIDEIV 323


>gi|313672895|ref|YP_004051006.1| flagellar motor switch protein flim [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939651|gb|ADR18843.1| flagellar motor switch protein FliM [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 342

 Score = 40.2 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 28/50 (56%)

Query: 69  FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
            D++M   + +++ +G   + + +++ L +GD I  + +  E V + +NN
Sbjct: 254 LDILMEAYLPLKLEIGPTILTVGDILELVEGDTIVFEHKAEEDVVLKVNN 303


>gi|218508017|ref|ZP_03505895.1| type III secretion system translocation protein [Rhizobium etli
           Brasil 5]
          Length = 52

 Score = 39.8 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
             L  + +G V  LD+ + ++VDI    + I +GEI  ++       VRV 
Sbjct: 1   RTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGWS---AVRVT 48


>gi|251797432|ref|YP_003012163.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
 gi|247545058|gb|ACT02077.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
          Length = 333

 Score = 39.8 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
            + +   LG   + I   + L+ GDVI+L+K + + + I +  + 
Sbjct: 258 KLPIVAELGESVITIKEFLGLAVGDVISLNKPIDDGLRIKVGEKL 302


>gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
 gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
 gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
          Length = 331

 Score = 39.8 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 57  DSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            S+   E + +   + ++ + +  ++ILG+  + + + +NL+ GDV+TL+++  + +++ 
Sbjct: 238 SSDEEDEVTKEYLRMKLDSVQLVSEVILGNASVTVEDFLNLTVGDVVTLERKFEDPLEVV 297

Query: 116 INNQK 120
           I  + 
Sbjct: 298 IEERP 302


>gi|284041533|ref|YP_003391873.1| surface presentation of antigens (SPOA) protein [Conexibacter
           woesei DSM 14684]
 gi|283945754|gb|ADB48498.1| surface presentation of antigens (SPOA) protein [Conexibacter
           woesei DSM 14684]
          Length = 322

 Score = 39.8 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           V M+  +GS  M I +++ L+ GD++ L     + V +   +  I
Sbjct: 255 VTMRAEVGSVEMAIDDVLGLAPGDLVKLSSLAADGVVVYAEDVPI 299


>gi|973194|gb|AAB00543.1| FliM' [Treponema pallidum]
          Length = 155

 Score = 39.8 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
           D +  + + +   +GS  + + +++ L  GD+I L D  VG+   ++I N+K
Sbjct: 63  DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRK 114


>gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 325

 Score = 39.8 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           + +M  PV+M I +G   +    L+ L +GD+I LD    E ++  +  
Sbjct: 250 ERLMETPVEMVIRMGRTTISGRQLLYLQEGDIILLDTDEDELLEAEVEG 298


>gi|237755434|ref|ZP_04584059.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692398|gb|EEP61381.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 322

 Score = 39.8 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 58  SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           S    E   +    ++ + + + + L    + +   +N   G  I L+K+  E +D+ + 
Sbjct: 230 SEVSPEWRKELIKKLLKVNLNLTLELDKFSVLVEEFLNYEVGTEIILNKKQSEELDLKVE 289

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           ++   K     + + D  F   + +I+  
Sbjct: 290 DKVKFKA---SIGKLDKKFAAMITKIIKE 315


>gi|126732535|ref|ZP_01748333.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
 gi|126706981|gb|EBA06049.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
          Length = 368

 Score = 39.8 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 52  EPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +P+   +      +      I++ +P ++  +L    + +S    L  GDV+ L K   +
Sbjct: 173 KPVPRSAEQGGADAAGPHAAILDRVPARLDAVLSRITLPLSRAQTLKPGDVLKLSKDALD 232

Query: 111 SVDITIN-NQKIAKGEITIMEEDDTHFGVRVI 141
            V+I       +AKG    M + +    VR+ 
Sbjct: 233 RVEIIAGRGHMVAKGR---MGQLNGARAVRLT 261


>gi|292669771|ref|ZP_06603197.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
 gi|292648568|gb|EFF66540.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
          Length = 333

 Score = 39.8 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S D  +  E+  +    I    V   + LGS  + I+  + L  GDV+ LD    + +  
Sbjct: 239 SVDKESTPEQVAELQRKIERTWVPFSVELGSVDITINEFLTLGFGDVLQLDTLAQDELVC 298

Query: 115 TI 116
            +
Sbjct: 299 YV 300


>gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
           3645]
 gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
           3645]
          Length = 376

 Score = 39.8 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 54  ISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            +  ++ + E+S       ++   V++ + L    +   +L+ L  GDVIT  K   E +
Sbjct: 260 FAYGTSEVSEESRQALSTQIDGASVEVGVTLAETKITTEDLLELRVGDVITTPKDSREPL 319

Query: 113 DITINN 118
            +++N 
Sbjct: 320 KVSVNG 325


>gi|89068711|ref|ZP_01156097.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
           HTCC2516]
 gi|89045674|gb|EAR51736.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
           HTCC2516]
          Length = 316

 Score = 39.5 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 16/154 (10%)

Query: 3   KKVSKISYIKDNLEGRSMHI-----DNPLQ----DTNVSSPTNNSEMLIQKNDVDNI--- 50
           +++S++S+  D+LE     I      +P      D  V         LI    +D +   
Sbjct: 150 RQLSEVSFEIDSLESAPETIAIAPSGSPAVWVTLDLTVGERGGALYFLIPYTALDTVRPV 209

Query: 51  -SEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
            ++P              + +  I +  V +   L    + +   +   KG  I L    
Sbjct: 210 LNQPFLGGKIGGDTSWRKDLEEKIEDTTVTLTASLHRLRVPVQEALGWRKGQTIDLGISA 269

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            + VD+    +++ +G+  +         +R+IE
Sbjct: 270 EQPVDVVCGERRMFRGQ--MGRRATGQVALRLIE 301


>gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565]
 gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565]
          Length = 356

 Score = 39.5 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V+ P +  E + +  D    S+   +D    +  S    D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           +  L    + +  L+ L  GD+I +D
Sbjct: 259 RAKLLETELTLRELMELRPGDIIPVD 284


>gi|329902178|ref|ZP_08273067.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548849|gb|EGF33478.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 317

 Score = 39.5 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +P+++   +G C   +  L  L  G V+ ++     ++ IT   + + +GE+  +     
Sbjct: 251 LPLQLHFDMGCCHTTLGGLRTLVAGSVLPIEGGSPAAIGITAGGRTLGQGELVEVN---G 307

Query: 135 HFGVRVI 141
              +R+I
Sbjct: 308 KLAIRII 314


>gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
           255-15]
 gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
           255-15]
          Length = 327

 Score = 39.5 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 27/45 (60%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           V ++ +LG   +    L++L  GD ++L  R  + V++ ++++K+
Sbjct: 260 VDLKAVLGQTELSFGELLHLEVGDCLSLQTRTSDPVELFVDDRKM 304


>gi|255021379|ref|ZP_05293427.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
 gi|254969242|gb|EET26756.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
          Length = 337

 Score = 39.5 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 48  DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D ++   ++D + I ++   +  D +    +++++      + +  L+ L  GDVI L++
Sbjct: 229 DQLTAGTTADRSEIDKRWVQSLHDELREATLELRVEFARLPISVRQLLALRVGDVIPLER 288

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              E++   ++   + +G           + ++  E L  +
Sbjct: 289 P--ETLVARVDGIPVFRGP---YGVHGGKYAIQFHEALPPE 324


>gi|229160724|ref|ZP_04288716.1| Flagellar motor switch protein [Bacillus cereus R309803]
 gi|228622739|gb|EEK79573.1| Flagellar motor switch protein [Bacillus cereus R309803]
          Length = 74

 Score = 39.5 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 32/53 (60%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +IP+ +   +G+   +I +L++++KG +  L+     +V I + N++I  G+I
Sbjct: 6   DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRIMLENEEIGTGKI 58


>gi|85711035|ref|ZP_01042095.1| flagellar motor switch protein [Idiomarina baltica OS145]
 gi|85694948|gb|EAQ32886.1| flagellar motor switch protein [Idiomarina baltica OS145]
          Length = 354

 Score = 39.5 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +++ P +  E + +  D    S+   +D    +  S    D IM++PV+M
Sbjct: 204 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTD----MRWSKALRDEIMDVPVEM 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
              L    + +  +++  +GD+I L+
Sbjct: 260 VAKLADVDVTLREVMDFEEGDIIPLE 285


>gi|42528263|ref|NP_973361.1| flagellar motor switch protein FliM [Treponema denticola ATCC
           35405]
 gi|4426948|gb|AAD20622.1| flagellar switch protein FliM [Treponema denticola]
 gi|41819533|gb|AAS13280.1| flagellar motor switch protein FliM [Treponema denticola ATCC
           35405]
 gi|325474547|gb|EGC77733.1| flagellar switch protein FliM [Treponema denticola F0402]
          Length = 344

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
           D +  + V M   +GS  + I +++NL  GDV+ L + RVG+   +T+ ++ 
Sbjct: 252 DKLSTVEVDMVAEVGSLDVSIRDVLNLRAGDVVRLPNVRVGDPFKLTVGSRP 303


>gi|304438436|ref|ZP_07398376.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368519|gb|EFM22204.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 333

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S D  +  E+  +    I    V   + LG   + I+  + L  GDV+ LD    + +  
Sbjct: 239 SMDRESSPEQVAELQRKIERTSVPFTVQLGEIHVTINEFLTLGFGDVLQLDTLTKDELVC 298

Query: 115 TI--NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            +  N + +A+              V++  I+  +
Sbjct: 299 YVGSNPKFLAR-----PGTAGKRMAVQISGIIEGE 328


>gi|291558209|emb|CBL35326.1| Flagellar motor switch protein [Eubacterium siraeum V10Sc8a]
          Length = 319

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 29/66 (43%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S   +       E+  +    +    + +  +L    + + +++NL   D+I L+K + +
Sbjct: 227 SGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITD 286

Query: 111 SVDITI 116
           +V + +
Sbjct: 287 NVQLKV 292


>gi|94496751|ref|ZP_01303326.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58]
 gi|94423764|gb|EAT08790.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58]
          Length = 93

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-D 105
           +D+   P  S +        D+F       V+++  L    + +S L  + +G V+ L D
Sbjct: 1   MDDADTPAMSPTPAGSTFPADDFS------VQLRFELDQTDVPLSRLQAVQQGGVLPLQD 54

Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +     V I    + IA G+I  + +    +GV +  +L  
Sbjct: 55  RDGALPVRIIAGGRAIAAGQIVSVGDS---YGVLIETVLKE 92


>gi|285018282|ref|YP_003375993.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473500|emb|CBA16003.1| probable xanthomonas secretion apparatus protein [Xanthomonas
           albilineans]
          Length = 346

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 8   ISYIKDNLEGRSMHIDNPLQD-----TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNIL 62
           I      L  R+ HI  PL       T    P    E + Q   V  ++  +  D     
Sbjct: 209 IKITTPTLMLRASHIAFPLSLDQGVLTVADLPFPYQEQVSQTPSVPPVAHSVDDDPAPNE 268

Query: 63  EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
                    +  +PV++        ++++ L  L  GDV+ L+   G  + I  N + + 
Sbjct: 269 SSPI----WVGELPVELSFAFEPLALKLAELSALRPGDVVPLE--SGVRLLIHANGRPVG 322

Query: 123 KGEITIME 130
           + E+  +E
Sbjct: 323 EAELVEVE 330


>gi|225620315|ref|YP_002721572.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
           WA1]
 gi|296126963|ref|YP_003634215.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
           12563]
 gi|225215134|gb|ACN83868.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
           WA1]
 gi|296018779|gb|ADG72016.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
           12563]
          Length = 343

 Score = 39.1 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
           + + NI V+    LGS  + +S+++NL KGDV+   D ++ + V   I N+K
Sbjct: 255 EKLQNIFVETSAELGSMQLPLSDILNLQKGDVVKFTDTKITDPVIFKIGNRK 306


>gi|319944169|ref|ZP_08018445.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
           51599]
 gi|319742464|gb|EFV94875.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
           51599]
          Length = 349

 Score = 39.1 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 13/68 (19%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI----TINNQKIAKGEITIMEED 132
           V++   L +  + +  L+ L  GDVI ++   G  + I      N +           E 
Sbjct: 279 VELVAELTTATLTLGELMKLRTGDVIEIETGPGAMLKIGQVPIFNGR---------YGEH 329

Query: 133 DTHFGVRV 140
           +  + VR+
Sbjct: 330 NGRYAVRI 337


>gi|167750716|ref|ZP_02422843.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
 gi|167656395|gb|EDS00525.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
          Length = 331

 Score = 39.1 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 29/66 (43%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S   +       E+  +    +    + +  +L    + + +++NL   D+I L+K + +
Sbjct: 239 SGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITD 298

Query: 111 SVDITI 116
           +V + +
Sbjct: 299 NVQLKV 304


>gi|229189860|ref|ZP_04316870.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
 gi|228593534|gb|EEK51343.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
          Length = 81

 Score = 39.1 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 32/53 (60%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +IP+ +   +G+   +I +L++++KG +  L+     +V + + N++I  G+I
Sbjct: 13  DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKI 65


>gi|313895914|ref|ZP_07829468.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975339|gb|EFR40800.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 334

 Score = 39.1 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            S D  +  ++  D    I    V   + LG+  + I+  + L  GDV+ LD    + + 
Sbjct: 238 ASVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAKDELV 297

Query: 114 ITI 116
             +
Sbjct: 298 CYV 300


>gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
 gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
          Length = 329

 Score = 39.1 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
            +Q +LG   M +  +++L  GD++TL  +V + + + + + K   GEI I++ +
Sbjct: 261 NLQAVLGESTMTLREILDLEIGDILTLSTKVRDPMVLQVGDMKKYYGEIGIIDNN 315


>gi|284989543|ref|YP_003408097.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
           43160]
 gi|284062788|gb|ADB73726.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
           43160]
          Length = 321

 Score = 39.1 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 3/110 (2%)

Query: 15  LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74
           +   ++ I +   +  +  P ++ ++ +       +SE   +      E   +       
Sbjct: 186 VASYTIGIGSRSGEATLVLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLT---Q 242

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           +PV + +      +   +L++L+ GDV+ L       +++T N    A  
Sbjct: 243 VPVDVGVRFAPLEVSSEDLLSLAVGDVLLLRHPQDAPLEVTTNEVTFAYA 292


>gi|291532053|emb|CBK97638.1| Flagellar motor switch protein [Eubacterium siraeum 70/3]
          Length = 319

 Score = 39.1 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 29/66 (43%)

Query: 51  SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           S   +       E+  +    +    + +  +L    + + +++NL   D+I L+K + +
Sbjct: 227 SGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTVLTLRDVLNLQVNDIIPLNKPITD 286

Query: 111 SVDITI 116
           +V + +
Sbjct: 287 NVQLKV 292


>gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1]
 gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1]
          Length = 332

 Score = 39.1 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           V +   LG   + I + + L  GDVI L+KR+   + I +
Sbjct: 260 VPIVAELGDSDITIDDFLMLDIGDVIQLNKRIDAPLTIKV 299


>gi|312962467|ref|ZP_07776958.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6]
 gi|311283394|gb|EFQ61984.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6]
          Length = 109

 Score = 39.1 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 91  SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
             L   + G V+ L   V   V++ +N Q  A GE+  +E+     GV + E+
Sbjct: 52  KRLAAFAPGKVLPLAPTVIHGVEVRVNGQLFALGELVQLED---RLGVELHEV 101


>gi|294675223|ref|YP_003575839.1| family 3 glycosyl hydrolase [Prevotella ruminicola 23]
 gi|294471943|gb|ADE81332.1| glycosyl hydrolase, family 3 [Prevotella ruminicola 23]
          Length = 823

 Score = 39.1 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 17/100 (17%)

Query: 31  VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII-------- 82
            ++     +  I ++ V       +     + EK     +L ++I  KM +         
Sbjct: 13  AATMMQAQQPAIPRDAVLEAKIEKTLAKMTLDEKIGQMLELNLDIIGKMTVENAKVDREK 72

Query: 83  -------LGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
                   G    +I +L+ ++   +I  DK  G  VDI 
Sbjct: 73  VRSVMQQYGRSEAEIKDLLKMTDQQII--DKLGGFPVDIY 110


>gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
 gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
          Length = 347

 Score = 39.1 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  ST   D IM++PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALRDEIMDVPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L+ L  GDVI ++    E   + +      +     M        V+
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYR---VKMGRSGEKLAVQ 314

Query: 140 VIE 142
           + E
Sbjct: 315 ISE 317


>gi|320529422|ref|ZP_08030510.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
 gi|320138388|gb|EFW30282.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
          Length = 334

 Score = 39.1 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           S D  +  ++  D    I    V   + LG+  + I+  + L  GDV+ LD    + +  
Sbjct: 239 SVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAKDELVC 298

Query: 115 TI 116
            +
Sbjct: 299 YV 300


>gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis
           HTE831]
 gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
          Length = 330

 Score = 39.1 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 24/37 (64%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            V+++ ILG+  + I + +N  +GD+I+LD+ +   +
Sbjct: 257 EVELKAILGATTISIHDFLNFQQGDIISLDQPIDAPL 293


>gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01]
 gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01]
          Length = 347

 Score = 39.1 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  ST   D IM++PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALRDEIMDVPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L+ L  GDVI ++    E   + +      +     M        V+
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYR---VKMGRSGEKLAVQ 314

Query: 140 VIE 142
           + E
Sbjct: 315 ISE 317


>gi|258404714|ref|YP_003197456.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
           5692]
 gi|257796941|gb|ACV67878.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
           5692]
          Length = 336

 Score = 38.7 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL--DKRVGESVDITINNQKIAKGEIT 127
           D +M +  +++    +  + I  ++NL  GD+I L  D++ G+ V   +  +   +    
Sbjct: 255 DEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQRV--LVEQKPKFQA--- 309

Query: 128 IMEEDDTHFGVRVI 141
           +         VR+ 
Sbjct: 310 VAGTRKGKKAVRIT 323


>gi|310659031|ref|YP_003936752.1| flim [Clostridium sticklandii DSM 519]
 gi|308825809|emb|CBH21847.1| FliM [Clostridium sticklandii]
          Length = 332

 Score = 38.7 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
              + + ++ D    LE      +      + +  ++G   + +   + L +GDVI L +
Sbjct: 235 FSTVKKELNEDDKGYLETRVKRAN------IDINAVVGDTYITVEEFIYLQEGDVIKLSR 288

Query: 107 RVGESVDITINNQ 119
           ++ E +++ +  +
Sbjct: 289 KIDEDLELHVEGK 301


>gi|195952553|ref|YP_002120843.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
 gi|195932165|gb|ACG56865.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
          Length = 321

 Score = 38.7 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           S+ ++ ++  + N +LI N+ V + + +      + +++    GD ITL       V + 
Sbjct: 230 SEVSDYVDYDSINKNLIKNLTVSLSVAIDGGDFMVKDILEWEVGDTITLKTSANRPVKVN 289

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
           I       G   ++   ++   V+++++L+ +
Sbjct: 290 IEGMLKMYG---VLGRSNSKKAVKILKLLDNK 318


>gi|220905099|ref|YP_002480411.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869398|gb|ACL49733.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 326

 Score = 38.7 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           + +M  PV++++  G   +  + L+ +  GD++ LDK   + +D T+  
Sbjct: 250 ERLMETPVELKVCFGKTTITGNQLLRMQVGDILVLDKDEEDMLDCTVAG 298


>gi|42780855|ref|NP_978102.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|229195974|ref|ZP_04322727.1| Flagellar motor switch protein [Bacillus cereus m1293]
 gi|42736775|gb|AAS40710.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
 gi|228587533|gb|EEK45598.1| Flagellar motor switch protein [Bacillus cereus m1293]
          Length = 79

 Score = 38.7 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 32/53 (60%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +IP+ +   +G+   +I +L++++KG +  L+     +V + + N++I  G+I
Sbjct: 11  DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKI 63


>gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
 gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
          Length = 334

 Score = 38.7 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134
            V +   L      +  L+ +  GD I LD+   E  +  +I    I + +       ++
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EPRIQASIGGVPIFECQ---YGTHNS 310

Query: 135 HFGVRVIE 142
            + +R+ E
Sbjct: 311 KYAIRIEE 318


>gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32]
 gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32]
          Length = 347

 Score = 38.7 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S+   D IM++PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALRDEIMDVPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L+ L  GDVI ++    E   + +      +     M        V+
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYR---VKMGRSGEKLAVQ 314

Query: 140 VIE 142
           + E
Sbjct: 315 ISE 317


>gi|238563925|ref|ZP_04610802.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           GB8 horse 4]
 gi|238519669|gb|EEP83138.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           GB8 horse 4]
          Length = 160

 Score = 38.7 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +          ++    D+     +  D    +  + 
Sbjct: 38  PADRAGDLPAPSAAHSSPGSLAGLPAGLQ-----ADAPPRDARYAAPEPAD----LGEVA 88

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 89  LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 145

Query: 136 FGVRV 140
            GVR+
Sbjct: 146 LGVRI 150


>gi|229011055|ref|ZP_04168249.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
 gi|228750227|gb|EEM00059.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
          Length = 74

 Score = 38.7 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 32/53 (60%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +IP+ +   +G+   +I +L++++KG +  L+     +V I + N++I  G+I
Sbjct: 6   DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTENTVLIMLENEEIGTGKI 58


>gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 334

 Score = 38.7 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134
            V +   L      +  L+ +  GD I LD+   E  +  +I    I + +       ++
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EPRIQASIGGVPIFECQ---YGTHNS 310

Query: 135 HFGVRVIE 142
            + +R+ E
Sbjct: 311 KYAIRIEE 318


>gi|138894751|ref|YP_001125204.1| flagellar motor switch protein FliM [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247627|ref|ZP_03146329.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
 gi|134266264|gb|ABO66459.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212411|gb|EDY07168.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
          Length = 334

 Score = 38.7 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           + +   LG+  + +   + L  GDVI L + + E + + I
Sbjct: 261 LPIVAELGTAVVTVGEFLQLEVGDVIQLKQSIHEPLVVKI 300


>gi|152975176|ref|YP_001374693.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023928|gb|ABS21698.1| flagellar motor switch protein, putative [Bacillus cytotoxicus NVH
           391-98]
          Length = 74

 Score = 38.7 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 31/53 (58%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +IP+ +   +G    +I +L++++KG +  L+     +V + + N++I  G+I
Sbjct: 6   DIPLTIYFEIGKTKKKIEDLLHITKGTLYRLEDSTKNTVRLMLENEEIGTGKI 58


>gi|30019807|ref|NP_831438.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|47565431|ref|ZP_00236472.1| flagellar motor switch protein fliN VC2125, putative [Bacillus
           cereus G9241]
 gi|49477320|ref|YP_035881.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143696|ref|YP_083132.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|75763359|ref|ZP_00743097.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118477196|ref|YP_894347.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|163939572|ref|YP_001644456.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|196033551|ref|ZP_03100963.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           W]
 gi|196038931|ref|ZP_03106238.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           NVH0597-99]
 gi|196045029|ref|ZP_03112262.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           03BB108]
 gi|206970641|ref|ZP_03231593.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH1134]
 gi|206974901|ref|ZP_03235816.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           H3081.97]
 gi|217959245|ref|YP_002337793.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|218235179|ref|YP_002366447.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|218896696|ref|YP_002445107.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           G9842]
 gi|218902876|ref|YP_002450710.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH820]
 gi|222095385|ref|YP_002529445.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|225863620|ref|YP_002748998.1| hypothetical protein BCA_1722 [Bacillus cereus 03BB102]
 gi|228900344|ref|ZP_04064573.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
 gi|228907395|ref|ZP_04071253.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
 gi|228914340|ref|ZP_04077955.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228920472|ref|ZP_04083817.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228926798|ref|ZP_04089866.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933046|ref|ZP_04095909.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228938875|ref|ZP_04101475.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228945365|ref|ZP_04107720.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228952145|ref|ZP_04114237.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228958043|ref|ZP_04119778.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228964746|ref|ZP_04125853.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971756|ref|ZP_04132377.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978365|ref|ZP_04138742.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
 gi|228984847|ref|ZP_04145017.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229017048|ref|ZP_04173967.1| Flagellar motor switch protein [Bacillus cereus AH1273]
 gi|229023229|ref|ZP_04179739.1| Flagellar motor switch protein [Bacillus cereus AH1272]
 gi|229029442|ref|ZP_04185525.1| Flagellar motor switch protein [Bacillus cereus AH1271]
 gi|229043518|ref|ZP_04191227.1| Flagellar motor switch protein [Bacillus cereus AH676]
 gi|229058411|ref|ZP_04196795.1| Flagellar motor switch protein [Bacillus cereus AH603]
 gi|229069313|ref|ZP_04202603.1| Flagellar motor switch protein [Bacillus cereus F65185]
 gi|229078944|ref|ZP_04211496.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
 gi|229090725|ref|ZP_04221958.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
 gi|229096247|ref|ZP_04227220.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
 gi|229102361|ref|ZP_04233069.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
 gi|229109218|ref|ZP_04238817.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
 gi|229115202|ref|ZP_04244612.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
 gi|229121314|ref|ZP_04250545.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
 gi|229127089|ref|ZP_04256086.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
 gi|229132590|ref|ZP_04261438.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
 gi|229138462|ref|ZP_04267051.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
 gi|229144375|ref|ZP_04272780.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
 gi|229149967|ref|ZP_04278193.1| Flagellar motor switch protein [Bacillus cereus m1550]
 gi|229155333|ref|ZP_04283443.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
 gi|229172408|ref|ZP_04299967.1| Flagellar motor switch protein [Bacillus cereus MM3]
 gi|229178170|ref|ZP_04305541.1| Flagellar motor switch protein [Bacillus cereus 172560W]
 gi|229183954|ref|ZP_04311169.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
 gi|296502363|ref|YP_003664063.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|300117314|ref|ZP_07055104.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|301053300|ref|YP_003791511.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|29895352|gb|AAP08639.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
 gi|47557421|gb|EAL15748.1| flagellar motor switch protein fliN VC2125, putative [Bacillus
           cereus G9241]
 gi|49328876|gb|AAT59522.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977165|gb|AAU18715.1| flagellar motor switch protein N [Bacillus cereus E33L]
 gi|74489150|gb|EAO52628.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118416421|gb|ABK84840.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|163861769|gb|ABY42828.1| flagellar motor switch protein, putative [Bacillus
           weihenstephanensis KBAB4]
 gi|195993985|gb|EDX57941.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           W]
 gi|196024031|gb|EDX62705.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           03BB108]
 gi|196030076|gb|EDX68676.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           NVH0597-99]
 gi|206734277|gb|EDZ51447.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH1134]
 gi|206746920|gb|EDZ58312.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           H3081.97]
 gi|217063362|gb|ACJ77612.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH187]
 gi|218163136|gb|ACK63128.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           B4264]
 gi|218539681|gb|ACK92079.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           AH820]
 gi|218542965|gb|ACK95359.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
           G9842]
 gi|221239443|gb|ACM12153.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|225788270|gb|ACO28487.1| conserved domain protein [Bacillus cereus 03BB102]
 gi|228599479|gb|EEK57084.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
 gi|228605300|gb|EEK62750.1| Flagellar motor switch protein [Bacillus cereus 172560W]
 gi|228610879|gb|EEK68142.1| Flagellar motor switch protein [Bacillus cereus MM3]
 gi|228628048|gb|EEK84765.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
 gi|228633489|gb|EEK90092.1| Flagellar motor switch protein [Bacillus cereus m1550]
 gi|228639006|gb|EEK95431.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
 gi|228644999|gb|EEL01242.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
 gi|228650822|gb|EEL06809.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
 gi|228656205|gb|EEL12046.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
 gi|228662159|gb|EEL17768.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
 gi|228668342|gb|EEL23774.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
 gi|228674228|gb|EEL29473.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
 gi|228681008|gb|EEL35177.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
 gi|228687207|gb|EEL41112.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
 gi|228692667|gb|EEL46393.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
 gi|228704358|gb|EEL56792.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
 gi|228713800|gb|EEL65685.1| Flagellar motor switch protein [Bacillus cereus F65185]
 gi|228719920|gb|EEL71510.1| Flagellar motor switch protein [Bacillus cereus AH603]
 gi|228725740|gb|EEL76988.1| Flagellar motor switch protein [Bacillus cereus AH676]
 gi|228731901|gb|EEL82800.1| Flagellar motor switch protein [Bacillus cereus AH1271]
 gi|228738023|gb|EEL88509.1| Flagellar motor switch protein [Bacillus cereus AH1272]
 gi|228744221|gb|EEL94304.1| Flagellar motor switch protein [Bacillus cereus AH1273]
 gi|228774797|gb|EEM23193.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228781382|gb|EEM29583.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
 gi|228787846|gb|EEM35804.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794996|gb|EEM42495.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228801560|gb|EEM48442.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807499|gb|EEM54026.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228814337|gb|EEM60603.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228820724|gb|EEM66749.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228826647|gb|EEM72418.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832911|gb|EEM78480.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228839102|gb|EEM84398.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228845334|gb|EEM90370.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228852256|gb|EEM97052.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
 gi|228859231|gb|EEN03662.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
 gi|296323415|gb|ADH06343.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|298725149|gb|EFI65801.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|300375469|gb|ADK04373.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
 gi|324325780|gb|ADY21040.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326939375|gb|AEA15271.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 74

 Score = 38.7 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 32/53 (60%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           +IP+ +   +G+   +I +L++++KG +  L+     +V + + N++I  G+I
Sbjct: 6   DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKI 58


>gi|307293811|ref|ZP_07573655.1| surface presentation of antigens (SPOA) protein [Sphingobium
           chlorophenolicum L-1]
 gi|306879962|gb|EFN11179.1| surface presentation of antigens (SPOA) protein [Sphingobium
           chlorophenolicum L-1]
          Length = 299

 Score = 38.7 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +I +  + +L    + ++ L+ L  GDVI +   +  S+ + + ++ +A G    + E D
Sbjct: 224 DIRLPARTVLARPDLSLAELMQLKAGDVIPVT--INRSLPLIVGDRIVAHG---TIGEQD 278

Query: 134 THFGVRVIEILNAQ 147
                ++ +I   Q
Sbjct: 279 GRAAFQIEKISGNQ 292


>gi|222053613|ref|YP_002535975.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
 gi|221562902|gb|ACM18874.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
          Length = 328

 Score = 38.3 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 27/49 (55%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           + +   P+++ + +G+  + ++ L+NLS GD + L++     + + +  
Sbjct: 250 EELKEAPLEISVEMGNSSITLAELLNLSPGDTVMLEESGRNELLVKVGG 298


>gi|94495436|ref|ZP_01302016.1| flagellar switch protein [Sphingomonas sp. SKA58]
 gi|94424824|gb|EAT09845.1| flagellar switch protein [Sphingomonas sp. SKA58]
          Length = 295

 Score = 38.3 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +I +  + +L    + +++L+ L  GDVI +   +G ++ + + N+ +A G    + E D
Sbjct: 225 DIRLPARTVLARPNLSLADLMELKVGDVIPVT--IGRALPLIVGNRIVAHG---TIGEQD 279

Query: 134 THFGVRV 140
                ++
Sbjct: 280 GRAAFQI 286


>gi|167743329|ref|ZP_02416103.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 14]
          Length = 177

 Score = 38.3 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +            P  +   +    + +  D +  + 
Sbjct: 55  PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 105

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 106 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 162

Query: 136 FGVRV 140
            GVR+
Sbjct: 163 LGVRI 167


>gi|46579323|ref|YP_010131.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603117|ref|YP_967517.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
 gi|46448737|gb|AAS95390.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563346|gb|ABM29090.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
 gi|311233150|gb|ADP86004.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris RCH1]
          Length = 326

 Score = 38.3 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           + +M  PV++++  G   +  + L+ L  GDV+ LD    + +++TI  
Sbjct: 250 ERLMETPVELKVRFGETKITGNQLLRLQVGDVLLLDTDTDDMLEVTIAG 298


>gi|84502561|ref|ZP_01000697.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
 gi|84389373|gb|EAQ02170.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
          Length = 317

 Score = 38.3 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 52  EPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           +P    S    +    N  ++I +  V +   L    + +  ++   +G V+ L   V +
Sbjct: 214 QPFHGGSLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQEVLEWKRGQVLDLGIEVDQ 273

Query: 111 SVDITINNQKIAKGEITIME---EDDTHFGVRVIEILNAQ 147
            V +  +       E+ + +     +    +++ E L  +
Sbjct: 274 PVSLICSGH-----EMYMAQTGKRKNGRMALKITEQLKDE 308


>gi|167898939|ref|ZP_02486340.1| type III secretion inner membrane protein SctQ [Burkholderia
           pseudomallei 7894]
          Length = 174

 Score = 38.3 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
                 D P      SSP + + +          ++    D+     +  D    +  + 
Sbjct: 52  PADRAGDLPAPSAAHSSPGSLAGLPAGLQ-----ADAPPRDARYAAPEPAD----LGEVA 102

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135
           + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H
Sbjct: 103 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 159

Query: 136 FGVRV 140
            GVR+
Sbjct: 160 LGVRI 164


>gi|256370968|ref|YP_003108792.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007552|gb|ACU53119.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 302

 Score = 38.3 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 26/53 (49%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           + ++ +++ +      +    L+ L+ GDV+ L  R G+   + ++  ++ + 
Sbjct: 228 LHDVRLEVSVRFEPTSISSRTLLELAPGDVVPLGHRQGQPAWVIVDRTRLHRA 280


>gi|157364676|ref|YP_001471443.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
 gi|157315280|gb|ABV34379.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
          Length = 330

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            ++    + EK  ++    +  + +K+  ILG   + +  +++L  GDVI L     + V
Sbjct: 233 FTAKREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVKEILDLEVGDVIRLQTHKDDDV 292

Query: 113 DITINNQK--IAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + + ++   +A+  +        H  V+V  IL  +
Sbjct: 293 MVEVQSKPKFMARPGV-----FKGHRAVKVTRILKPE 324


>gi|149926087|ref|ZP_01914350.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105]
 gi|149825375|gb|EDM84586.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105]
          Length = 359

 Score = 37.9 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 39  EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98
           E+ IQ N+ D      S D ++      +N      I +++    G   +  + L ++ +
Sbjct: 258 EVFIQMNEDDTRLHFGSDDLSDTSGLEEENLPPHEQIELEIHA--GKTKILFNELCSVQE 315

Query: 99  GDVITLDKRVGESVDITINNQKIAKGEIT 127
           G +I L +     V + +    I +GE+ 
Sbjct: 316 GTLIELREHALPMVTLCVMGSPILEGELV 344


>gi|320538201|ref|ZP_08038096.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
 gi|320145018|gb|EFW36739.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
          Length = 344

 Score = 37.9 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120
           D +  + + +   +G   + + ++++L  GDVI L D  VG+   +++ N+K
Sbjct: 252 DKLSTVDMDVVAEVGFLNLSVRDVLSLRIGDVIRLKDTHVGDPFTLSVGNRK 303


>gi|323166472|gb|EFZ52236.1| surface presentation of antigens family protein [Shigella sonnei
           53G]
          Length = 162

 Score = 37.9 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 56  SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
           S+SN   E +  +  L    +I VK+  IL    M I+ L    + ++      + + V+
Sbjct: 72  SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVN 131

Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIE 142
           I +N   +  GE+  +E+    +G+ +  
Sbjct: 132 IKVNGSLVGHGELVSIEDG---YGIEISS 157


>gi|94986472|ref|YP_594405.1| flagellar motor switch protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730721|emb|CAJ54083.1| Flagellar motor switch protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 325

 Score = 37.9 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           + ++  PV++++ +G+  +  + L+ L  GDV+ LD  V + ++ T+  
Sbjct: 250 ERLLETPVELKVRMGNTQITGNQLLRLKIGDVLVLDTDVEDLLECTVAG 298


>gi|239628949|ref|ZP_04671980.1| flagellar motor switch protein FliM [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519095|gb|EEQ58961.1| flagellar motor switch protein FliM [Clostridiales bacterium
           1_7_47FAA]
          Length = 296

 Score = 37.9 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 7   KISYIKDNLEGR-SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS 65
           ++  + D L  R +M +  P  +   S    +     +K D +           ++LE  
Sbjct: 172 ELEVVIDKLSARLNMVMPAPNVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLES- 230

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                      V+++ IL    +   +++ L+ GDVI L+K+V   + I + +
Sbjct: 231 ----------EVELRAILHEFTLDAQDILQLTPGDVIPLNKKVDSGISIYVED 273


>gi|319649555|ref|ZP_08003711.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
 gi|317398717|gb|EFV79399.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
          Length = 332

 Score = 37.9 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 54  ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + +D      +     +  I    V +   LGS  + I + ++L  GDVI L++ + +++
Sbjct: 236 MQTDKKEREPEVIARLERNIHKAEVPVICELGSSDIAIQDFLSLDIGDVIELNQGIDQAL 295

Query: 113 DITINN 118
            I + N
Sbjct: 296 IIKVGN 301


>gi|32266646|ref|NP_860678.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
           51449]
 gi|32262697|gb|AAP77744.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
           51449]
          Length = 353

 Score = 37.9 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 34/64 (53%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           SD+++   ++ +   LI    V +   LG   + +  +++L  GD++ LD    +++ ++
Sbjct: 238 SDTSSKKSRNKELQALIAGANVIVSGYLGDATLTLKEILDLQVGDIVRLDTIADDTIIVS 297

Query: 116 INNQ 119
           ++ +
Sbjct: 298 VDGR 301


>gi|260899856|ref|ZP_05908251.1| conserved domain protein [Vibrio parahaemolyticus AQ4037]
 gi|221271468|dbj|BAH15020.1| putative type III secretion system apparatus protein VscQ2 [Vibrio
           parahaemolyticus]
 gi|308107308|gb|EFO44848.1| conserved domain protein [Vibrio parahaemolyticus AQ4037]
 gi|328469630|gb|EGF40566.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus
           10329]
          Length = 71

 Score = 37.9 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + + + +++  C M +  L++L KG++I +D  V   V +   N+ IA G +  +++   
Sbjct: 1   MKIAIDVVIAHCSMTLEELLHLQKGNMIKIDDFVQSEVMLKSGNELIATGTLIKIDD--- 57

Query: 135 HFGVRVIEI 143
            +GV +  +
Sbjct: 58  QYGVSIDNV 66


>gi|297538201|ref|YP_003673970.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
 gi|297257548|gb|ADI29393.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
          Length = 334

 Score = 37.9 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V++   L    M I +++N+  GDV+ L+  + ES++  ++   +    +      +  
Sbjct: 256 EVEIVADLAKTNMMIGDVLNMKVGDVVPLN--IEESIEAQVDGVPVM---LCKYGMFNGQ 310

Query: 136 FGVRVIEILNA 146
           + +RV ++L +
Sbjct: 311 YALRVEKLLRS 321


>gi|148266212|ref|YP_001232918.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
 gi|146399712|gb|ABQ28345.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
          Length = 328

 Score = 37.9 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 24/43 (55%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           P+++ + +G+  + +  L+NL+ GD I L+ R    + + +  
Sbjct: 256 PLEISVEMGNSVITLDELLNLAPGDTIMLNNRGRSELLVKVGG 298


>gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 349

 Score = 37.9 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S    D IM++PV +
Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVNL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           +  L    + + +L+ L  GDVI +D
Sbjct: 259 RAKLLDVDLSLRDLMELQVGDVIPID 284


>gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 349

 Score = 37.9 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S    D IM++PV +
Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVNL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           +  L    + + +L+ L  GDVI +D
Sbjct: 259 RAKLLDVDLSLRDLMELQVGDVIPID 284


>gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 349

 Score = 37.9 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S    D IM++PV +
Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVNL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           +  L    + + +L+ L  GDVI +D
Sbjct: 259 RAKLLDVDLSLRDLMELQVGDVIPID 284


>gi|167566199|ref|ZP_02359115.1| type III secretion system protein BsaV [Burkholderia oklahomensis
           EO147]
          Length = 326

 Score = 37.9 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
            P +   +    ++      P  +         T + D +   PV ++ +L    + ++ 
Sbjct: 212 EPLSEDAIDDLHDERAAAEAPQDAPPPQDAPPPTFDIDAL---PVTLEFVLQDERVTVAQ 268

Query: 93  LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           L +   G V+ +    GE V I  N +    GE+  + E 
Sbjct: 269 LASCHPGLVLPVRGAPGE-VTIRANGRPFGCGELIQVGEQ 307


>gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9]
 gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium
           profundum SS9]
          Length = 348

 Score = 37.9 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ +  D    +  S    + IM++PV +
Sbjct: 203 IELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKD----VRWSMALREEIMDVPVNL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           +  L    + + +L+ L  GD+I +D  V ES  + + +    + +   M +   +  ++
Sbjct: 259 RAKLLDVDLSLRDLMELQAGDIIPID--VPESATVFVEDLPTYRAK---MGKSGDNIALK 313

Query: 140 VIE 142
           + +
Sbjct: 314 ITQ 316


>gi|146277687|ref|YP_001167846.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555928|gb|ABP70541.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 323

 Score = 37.9 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
            N E  S  I  PLQ     S    S M     D          D     EK       I
Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRTWREKLER---AI 253

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132
           ++IP+ +   L    + +  L+ +  GDV+ +  ++ E+V + + N+ I +G   +  E 
Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQIQPGDVLPV--QLTEAVSLLVENEPIFEG---VPGER 308

Query: 133 DTHFGVRVI 141
                + + 
Sbjct: 309 GGQAALNLT 317


>gi|284007672|emb|CBA73390.1| type III secretion inner membrane protein YscQ,SpaO [Arsenophonus
           nasoniae]
          Length = 234

 Score = 37.5 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 50  ISEPISSDSN--NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           + +P++SD +  N   +S+     +  + +K+  IL      ++ + +   G  + L+  
Sbjct: 135 LEQPVTSDQDDHNASPESSTAIFDLNQLALKVNFILQRQTFSLNTIKSWQTGTQLRLNSD 194

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
              ++ + IN Q  AKGE+  + E      V +  +L+ +
Sbjct: 195 AHCAIALEINGQIFAKGELIQVGE---QLAVELHTLLSTE 231


>gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
 gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
          Length = 348

 Score = 37.5 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ +  D    +  S    + IM++PV +
Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKD----VRWSMALREEIMDVPVNL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           +  L    + + +L+ L  GD+I +D  V ES  + + +    + +   M +   +  ++
Sbjct: 259 RAKLLDVDLSLRDLMELQAGDIIPID--VPESATVFVEDLPTYRAK---MGKSGDNIALK 313

Query: 140 VIE 142
           + +
Sbjct: 314 ITQ 316


>gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 356

 Score = 37.5 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V+ P +  E + +  D    S+   +D    +  S    D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           +  L    + +  L+ L  GD+I ++
Sbjct: 259 RAKLLETELTLRELMELQPGDIIPVE 284


>gi|260775668|ref|ZP_05884564.1| hypothetical protein VIC_001047 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608084|gb|EEX34253.1| hypothetical protein VIC_001047 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 106

 Score = 37.5 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 47  VDNISEPISSDSNNILEKSTDNFDLIMNIP--------VKMQIILGSCCMQISNLVNLSK 98
           +D   +  S DS  +L  S ++     ++P        V + + +G   + +S    +  
Sbjct: 1   MDGQDDVKSEDSALLLGGSDEHLSSESDMPNDQTGRITVNLGLEIGRVRLPLSEWAQVGP 60

Query: 99  GDVITLDKR-VGESVDITINNQKIAKGEITIM 129
           G V+ L    VGE+         +A GE+  +
Sbjct: 61  GSVLMLSGVGVGEAYLTDAEG-VVAYGELVDV 91


>gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 356

 Score = 37.5 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V+ P +  E + +  D    S+   +D    +  S    D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           +  L    + +  L+ L  GD+I ++    E++ + + +      +   M     +  ++
Sbjct: 259 RAKLLETDLTLRELMELKPGDIIPVEMP--ENLLVYVEDLPTFHAK---MGRTKDNVALK 313

Query: 140 VIE 142
           + +
Sbjct: 314 ITD 316


>gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila]
          Length = 356

 Score = 37.5 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V+ P +  E + +  D    S+   +D    +  S    D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           +  L    + +  L+ L  GD+I ++
Sbjct: 259 RAKLLETELTLRELMELQPGDIIPVE 284


>gi|289208344|ref|YP_003460410.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
 gi|288943975|gb|ADC71674.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
          Length = 324

 Score = 37.5 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 48  DNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           + +   + SD +++ ++     +  I +  V++   L    + +  L+++  GD+I ++ 
Sbjct: 229 EQLDTGLQSDRSDVDQRWMKALEEEIQDAEVEVSSTLTETEVTVQELLDIQPGDIIPIN- 287

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            + E+V + + +  + +G+  +    D    ++V +
Sbjct: 288 -LPETVTLKVEDIPLFRGKFGV---SDGKNAIQVTD 319


>gi|251768328|ref|ZP_02270322.2| type III secretion inner membrane protein SctQ [Burkholderia mallei
           PRL-20]
 gi|243060179|gb|EES42365.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
           PRL-20]
          Length = 100

 Score = 37.5 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130
           +  + + + + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  + 
Sbjct: 24  LGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG 83

Query: 131 EDDTHFGVRV 140
               H GVR+
Sbjct: 84  ---AHLGVRI 90


>gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893]
 gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893]
          Length = 332

 Score = 37.5 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 48  DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D +   + SD +++ E+      + I ++ V +   +    + + ++  L +GD+I ++ 
Sbjct: 225 DVLDAGVQSDIDDVDERWVSALQEDIKDVNVPINTTVCRRRISLRDIAKLKEGDIIPVE- 283

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            + E + +T N   + K     M   D    +R+ +
Sbjct: 284 -IPELLTLTANGIPVYKA---TMGTRDGKLALRIHD 315


>gi|89899368|ref|YP_521839.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
 gi|89344105|gb|ABD68308.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
          Length = 329

 Score = 37.5 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            + +   L      +  L+ +  GD I LD+     +++T+    + + +       +  
Sbjct: 257 EITLVAELARADATVEQLLAMKTGDFIELDRPSR--IEVTVEGVPVFECQ---YGTHNAK 311

Query: 136 FGVRV 140
           + +R+
Sbjct: 312 YAIRI 316


>gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum
           JL354]
          Length = 339

 Score = 37.5 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I+   V++  +LG   M+++++ +L  G  I  D    +  ++      +A+ +   +  
Sbjct: 264 ILRTEVEIYTVLGEREMRLADVHSLEIGQTIPFDVTPDDPFEVCCGGVPLARAQ---IGR 320

Query: 132 DDTHFGVRVIEILN 145
              H  + +++ + 
Sbjct: 321 QRNHVAIGIVDTIK 334


>gi|261252329|ref|ZP_05944902.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
 gi|260935720|gb|EEX91709.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
          Length = 349

 Score = 37.5 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  ST   + IM++PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           ++ L    + + +L+ L  GD+I ++
Sbjct: 260 RVQLLEQDISLRDLMELQPGDIIPIN 285


>gi|269103169|ref|ZP_06155866.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163067|gb|EEZ41563.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 347

 Score = 37.1 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S    + IM+IPV +
Sbjct: 203 IELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSRALREEIMDIPVNI 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           +  L    + + +L+ L  GD+I +D
Sbjct: 259 RAKLLDVDLTLRDLMELQVGDIIPVD 284


>gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
           4028]
 gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
           4028]
          Length = 325

 Score = 37.1 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120
           D +M  PV M +  G+  +    L+++  GD++ LD+   + +   I+   
Sbjct: 250 DRLMETPVDMNVTFGTTQITGRQLLDMKVGDILMLDQDEDDMLSGRIHGIL 300


>gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
 gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
          Length = 319

 Score = 37.1 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I    VK++ IL    M + +L NL  G VI L       V +  N+Q +   ++    +
Sbjct: 236 IQRTEVKLEAILEEREMSLGDLANLRVGQVIELQATARSPVTLACNDQPVFTCQL---GQ 292

Query: 132 DDTHFGVRVIEILNAQ 147
            +  + +++ E+++ +
Sbjct: 293 LNGSYTLQIDELIHEE 308


>gi|291278835|ref|YP_003495670.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
           SSM1]
 gi|290753537|dbj|BAI79914.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
           SSM1]
          Length = 333

 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           L+ +I V ++ +LG     +  +++L  GD I L+K+      + +NN
Sbjct: 255 LLEDIFVDVEAVLGENIFTVDEILSLKAGDTILLNKKSTHPAVLILNN 302


>gi|121533750|ref|ZP_01665577.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
           Nor1]
 gi|121307741|gb|EAX48656.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
           Nor1]
          Length = 334

 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 25/84 (29%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +    V + + LG   + + +L++L+ GDV+ L+ R                GE++++  
Sbjct: 257 LQRTSVPVIVELGRATVTVQDLLDLAVGDVLQLESRFD--------------GELSVIIG 302

Query: 132 DDTHF-----------GVRVIEIL 144
               F            V++ E++
Sbjct: 303 QREKFKCKPGLVGGKVAVQITEVM 326


>gi|225569967|ref|ZP_03778992.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
           15053]
 gi|225161437|gb|EEG74056.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
           15053]
          Length = 336

 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           ++++  L    + +  +  L  GDVI L+K     V + +  Q   +G++      + + 
Sbjct: 264 MEIKAELAEAQLSMKEVCGLKVGDVIDLNKSRESDVVLYVEEQPWFRGKL---GAHNKNA 320

Query: 137 GVRVIEILNAQ 147
            V++ + +  +
Sbjct: 321 AVKIKQCIQEE 331


>gi|330502773|ref|YP_004379642.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
 gi|328917059|gb|AEB57890.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
          Length = 323

 Score = 37.1 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 48  DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           + +     SD ++  E+      + I+++ V +   +    +++ +++++  GDVI ++ 
Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVE- 285

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + E+V +  N     K     +     +  ++V+E +  Q
Sbjct: 286 -LPENVVMRANGVPTFK---VKLGAHKGNLALQVLEPIERQ 322


>gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
 gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
          Length = 336

 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 7   KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPI-----SSDS 58
           ++ Y++  +  +  +I  P +    T+ S     ++  +      ++ EPI     S+  
Sbjct: 176 ELEYVRSEMNSQFANIATPSEIVVSTSFSLELGGAQAEMHICFPYSMVEPIRDLLYSTMQ 235

Query: 59  NNILEKSTDNFDLIMN----IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           ++ L +      L+        V++   LG+  + + ++VN+  GDVI L  +V E +  
Sbjct: 236 SDHLTQDRRWITLLSRQLQTAEVELTCNLGTARVTLRDIVNMRVGDVIPL--QVSELLQA 293

Query: 115 TINNQKI 121
           T++   +
Sbjct: 294 TVDGVPV 300


>gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
 gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
          Length = 327

 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 57  DSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            S      +T N    +  +PV++ +++G   + +   ++L  GDV+ LD+R GE +D+ 
Sbjct: 237 PSEPPDASATRNLRYWLEKVPVEVSVVVGETRLSVQEFLDLEVGDVLVLDRRFGEDLDVY 296

Query: 116 I 116
           +
Sbjct: 297 V 297


>gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
 gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
          Length = 367

 Score = 37.1 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LI    V  + ILG   + ++  +NL +GD++ LD+   +   +TI+ +     E+ + E
Sbjct: 253 LIGRAEVLYEAILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTIDKK-----EVFLAE 307

Query: 131 EDDTHF--GVRVIEILNA 146
                F   +R+ E++ +
Sbjct: 308 VGLHRFRKSIRIEELIRS 325


>gi|114332022|ref|YP_748244.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
 gi|114309036|gb|ABI60279.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
          Length = 330

 Score = 37.1 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            +++   LG   + +  ++N+ +GDVI LD  + ++V    N   I
Sbjct: 261 EIEIIANLGHTRVTLHQILNMQEGDVIALD--IPDTVVAMANGVPI 304


>gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 125

 Score = 37.1 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 82  ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           +L    + ++ L  + +  +++L   V  +V+I  N   +  GE+  M +     GV + 
Sbjct: 1   VLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDT---LGVEIH 57

Query: 142 EILNA 146
           E L+ 
Sbjct: 58  EWLSE 62


>gi|114320135|ref|YP_741818.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226529|gb|ABI56328.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 395

 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           +   + SD N + E+ T +    M    V++  +L    + + +++N+  GD+I ++  +
Sbjct: 229 LDAGVQSDRNEVDERWTRSLREEMKFAEVELSSVLTEVEVSLRDVMNMKPGDIIPVE--L 286

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            E+V +   +  + +G          +  +++ E +  +
Sbjct: 287 PEAVKVYAEDMPVFRGR---YGVRHGNTAIKITERIQPR 322


>gi|118475490|ref|YP_892646.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414716|gb|ABK83136.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 363

 Score = 37.1 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           LI    V  + ILG   + ++  +NL +GD++ LDK   +   + I+ +
Sbjct: 254 LIGRAEVLYEAILGRTVISVNEFLNLQEGDILRLDKSADDKAIVCIDKK 302


>gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36]
 gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36]
          Length = 350

 Score = 37.1 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 50  ISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           +   + SD  +  E+ +    + I+++PV++   L    + I  ++ L  GD+I ++
Sbjct: 229 LDAGVQSDKEDTDERWSSALQEEILDVPVELSTKLLETELTIGQIMELRVGDIIPIE 285


>gi|238787476|ref|ZP_04631274.1| Type III secretion system apparatus protein [Yersinia frederiksenii
           ATCC 33641]
 gi|238724263|gb|EEQ15905.1| Type III secretion system apparatus protein [Yersinia frederiksenii
           ATCC 33641]
          Length = 307

 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITINNQKIAK-------GE 125
           ++P  + + +G   + +  +  L+ G  +    +  GE V+I ++ Q +         GE
Sbjct: 236 DLPQTLVMEIGRLTLPLREIKQLAVGQTLACQTRCYGE-VNIRLHGQPVGSGSLLSCDGE 294

Query: 126 ITI 128
           + +
Sbjct: 295 LVV 297


>gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila]
          Length = 356

 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V+ P +  E + +  D    S+   +D    +  S    D IM++ V++
Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           +  L    + +  L+ L  GD+I ++
Sbjct: 259 RAKLLETDLTLRELMELRPGDIIPVE 284


>gi|333017444|gb|EGK36760.1| surface presentation of antigens family protein [Shigella flexneri
           K-227]
          Length = 102

 Score = 37.1 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +I VK+  IL    M I+ L    + ++      + + V+I +N   +  GE+  +E+  
Sbjct: 32  DINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELVSIEDG- 90

Query: 134 THFGVRVIE 142
             +G+ +  
Sbjct: 91  --YGIEISS 97


>gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
 gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
          Length = 357

 Score = 37.1 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
           D IM++PV +  +L    + + +++ +  GD+I ++    E + + I +    +G++   
Sbjct: 248 DEIMDVPVDLSTMLLEQELTLRDIMEMKAGDIIPVEMP--EHLLVRIEDLPTFRGKL--- 302

Query: 130 EEDDTHFGVRVIE 142
                +  VR+ E
Sbjct: 303 GRKGDNVAVRIEE 315


>gi|218887526|ref|YP_002436847.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758480|gb|ACL09379.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 409

 Score = 37.1 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V +   L    M + +L  L+ G    L       V +T+  + +  G +    +     
Sbjct: 337 VTVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLV---DLGGTL 393

Query: 137 GVRV 140
           GV+V
Sbjct: 394 GVQV 397


>gi|163801852|ref|ZP_02195749.1| flagellar motor switch protein M [Vibrio sp. AND4]
 gi|159174360|gb|EDP59164.1| flagellar motor switch protein M [Vibrio sp. AND4]
          Length = 348

 Score = 37.1 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S+   + IM+ PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L+ L  GDVI +D    E+  + I +    +     M   +    V+
Sbjct: 260 RVNLLEKDISLRDLMELQPGDVIPIDMP--ENATMFIEDLPTYR---VKMGRSEDKLAVQ 314

Query: 140 VIE 142
           V E
Sbjct: 315 VSE 317


>gi|315453793|ref|YP_004074063.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
 gi|315132845|emb|CBY83473.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
          Length = 353

 Score = 36.8 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 34/64 (53%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           +++++   ++ +   L+    V +   LGS  + +  +++L  GD I L+K   ++V + 
Sbjct: 238 TETSSKKSRNKELQALVGGASVDVSAFLGSVRLTLKEVLDLVVGDTIRLNKVANDTVVVN 297

Query: 116 INNQ 119
           I+ +
Sbjct: 298 IDKK 301


>gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 325

 Score = 36.8 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           +++IP+KM   L    + +S L+ L +GDV  +  ++G+ V++ ++  +   GE   M E
Sbjct: 256 VLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPI--QIGDGVEVLMDEHRFYYGE---MGE 310

Query: 132 DDTHFGVRVIE 142
                 + +  
Sbjct: 311 VGGQSAINLTS 321


>gi|146307837|ref|YP_001188302.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
 gi|145576038|gb|ABP85570.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
          Length = 323

 Score = 36.8 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 48  DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           + +     SD ++  E+      + I+++ V +   +    +++ +++++  GDVI ++ 
Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVE- 285

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + E+V +  N     K     +     +  ++V+E +  Q
Sbjct: 286 -LPENVIMRANGVPTFK---VKLGAHKGNLALQVLEPIERQ 322


>gi|266621918|ref|ZP_06114853.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
           DSM 13479]
 gi|288866391|gb|EFC98689.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
           DSM 13479]
          Length = 295

 Score = 36.8 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 27/47 (57%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           ++   V+++ I     +   +++ L  GDV+ L+K+V  S+DI + +
Sbjct: 226 LLESEVELRAIFHEFSLDAQDILQLQPGDVVPLNKKVDSSIDIYVED 272


>gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7]
          Length = 322

 Score = 36.8 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           +   +    + + +++++  GDVI ++  +G+S+ +  N 
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE--LGDSLVLRANG 296


>gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
           DFL-11]
 gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
           DFL-11]
          Length = 319

 Score = 36.8 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           I    VK++ IL    M +  L NL  G VI L       V +  N+Q I   ++    +
Sbjct: 236 IQRTEVKLEAILEEREMHLGELSNLKVGQVIELQATARSPVTLACNDQPIFTCQL---GQ 292

Query: 132 DDTHFGVRVIEILNAQ 147
            D  + +++ E+++ +
Sbjct: 293 LDGSYTLQIEELIHEE 308


>gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1]
 gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1]
          Length = 349

 Score = 36.8 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S+   + IM++PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDVPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           ++ L    + + +L+ L  GD+I +D
Sbjct: 260 RVNLLEKDVSLRDLMELQAGDIIPID 285


>gi|34498061|ref|NP_902276.1| translocation protein in type III secretion [Chromobacterium
           violaceum ATCC 12472]
 gi|34103916|gb|AAQ60276.1| translocation protein in type III secretion [Chromobacterium
           violaceum ATCC 12472]
          Length = 290

 Score = 36.8 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131
           + +  + + + +    + +  L NL  G +++        V +   ++ IA+G +    +
Sbjct: 221 LGDAMITVTVEVAKMELPLHQLGNLQPGTLLSSAVSSDGLVTLKAGSRPIARGTLL---D 277

Query: 132 DDTHFGVRV 140
            D+   VR+
Sbjct: 278 IDSRLAVRI 286


>gi|300871253|ref|YP_003786126.1| flagellar motor switch protein FliM [Brachyspira pilosicoli
           95/1000]
 gi|300688954|gb|ADK31625.1| flagellar motor switch protein, FliM [Brachyspira pilosicoli
           95/1000]
          Length = 343

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESV 112
           + + NI V+    LGS  + +S+++NL KGDV+   + ++ + V
Sbjct: 255 EKLQNIYVETSAELGSMQLPLSDILNLQKGDVVKFTETKITDPV 298


>gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC
           43644]
 gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC
           43644]
          Length = 712

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 19  SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS-SDSNNILEKSTDNFDLIMNIPV 77
              + N   +     P   ++  +   +++N++   +  +   I  +  + F+LI +  V
Sbjct: 113 PQALPNAAAENTPPLPEEVADPKMSAKELENLTPYTNIPNPRPITGQIAELFELIQDPSV 172

Query: 78  KMQIILGSCC-MQISN 92
           ++ +++G    +Q+  
Sbjct: 173 ELSVVVGRGKVIQLRE 188


>gi|94968664|ref|YP_590712.1| flagellar motor switch protein FliM [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550714|gb|ABF40638.1| flagellar motor switch protein FliM [Candidatus Koribacter
           versatilis Ellin345]
          Length = 329

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 25/48 (52%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           ++  P  + + L    +++  L+ L  GD++ L +    ++++++  +
Sbjct: 250 LLGCPFPVSLGLVDASVRVRELLQLRAGDILPLKRSAESAIELSVGGR 297


>gi|91200230|emb|CAJ73274.1| similar to flagellar motor switch [Candidatus Kuenenia
           stuttgartiensis]
          Length = 318

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
             ++ +   I+  + N  E+       +  +P+ +  ILG+  +  + L+NL  GDVI+L
Sbjct: 221 ATLEAVMGKITEATLNREEEIVIIKQTLNQVPLLVNTILGTTQLSFNELINLRVGDVISL 280

Query: 105 DKRVGESVDITI 116
           D ++ + + + I
Sbjct: 281 DNKITDHLSLEI 292


>gi|160896094|ref|YP_001561676.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
 gi|160361678|gb|ABX33291.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
          Length = 334

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            V +   L      +  L+ +  GD I LD+   E +
Sbjct: 257 EVTLVAELARADATVEQLLAMRPGDFIELDR---EPL 290


>gi|17549082|ref|NP_522422.1| Hrp conserved protein HRCQ [Ralstonia solanacearum GMI1000]
 gi|6066702|emb|CAB58248.1| HrpQ protein [Ralstonia solanacearum]
 gi|17431333|emb|CAD18012.1| hrp conserved protein hrcq [Ralstonia solanacearum GMI1000]
 gi|1097281|prf||2113360G hrpQ gene
          Length = 354

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 22/120 (18%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           PL D + + P + +              P+                  + +PV +   L 
Sbjct: 249 PLTDDDDAYPHDFAAPRTPAGSSAGQGVPLEQ----------------LEVPVHL--ELA 290

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143
              M ++ L  L    V+TL  ++ + SV +  + Q +  G++  + E     G+++  I
Sbjct: 291 VMGMPLAELAALQPQHVLTLPVKIRDVSVRLVCHGQTLGHGQLVAVGE---QLGLQIASI 347


>gi|333008532|gb|EGK28001.1| surface presentation of antigens family protein [Shigella flexneri
           K-218]
          Length = 102

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           +I VK+  IL    M I+ L    + ++      + + V+I +N   +  GE+  +E+  
Sbjct: 32  DINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELVSIEDG- 90

Query: 134 THFGVRVIE 142
             +G+ +  
Sbjct: 91  --YGIEISS 97


>gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
 gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
          Length = 334

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            V +   L      +  L+ +  GD I LD+   E +
Sbjct: 257 EVTLVAELARADATVEQLLAMRPGDFIELDR---EPL 290


>gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
 gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
          Length = 349

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  ST   + IM++PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVI 102
           ++ L    + + +L+ L  GD+I
Sbjct: 260 RVDLLEQDISLRDLMELQPGDII 282


>gi|254469380|ref|ZP_05082785.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
 gi|211961215|gb|EEA96410.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
          Length = 350

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 17  GRSMHIDNPLQDTNVSSPTNN--SEMLIQKNDVDNISEPISSD-SNNILEKSTDNFDLIM 73
           G+ + +D PL   ++         E +   N +  ++E ++++ +     +   + D + 
Sbjct: 216 GQRITVDGPLSRHHLVLVEQGWGCERIESVNGMSELAEQVNAEQTAEAGAEEIGSID-LS 274

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV---GESVDITINNQKIAKGEITIME 130
            + V ++  +    + I+ L + + G ++ +D         V +    ++IAKG +  ++
Sbjct: 275 QMSVPVRFEVDEREISIAELESWAAGTLVNIDVPALNEETPVYVRAAGKRIAKGHLVQID 334

Query: 131 EDDTHFGVRVI 141
           E      +R+ 
Sbjct: 335 E---RVALRIS 342


>gi|330826724|ref|YP_004390027.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
           K601]
 gi|329312096|gb|AEB86511.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
           K601]
          Length = 334

 Score = 36.4 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 15/70 (21%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE---- 131
            V +   L      +  L+ +  GD I LD+   E        +  A  E   + E    
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EP-------RIRASIEGVPVFECQYG 306

Query: 132 -DDTHFGVRV 140
             +  + +R+
Sbjct: 307 THNAKYAIRI 316


>gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
 gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
 gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
 gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
          Length = 334

 Score = 36.4 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
            V +   L      +  L+ +  GD I LD+   E +
Sbjct: 257 EVTLVAELARADATVEQLLAMRPGDFIELDR---EPL 290


>gi|319764508|ref|YP_004128445.1| flagellar motor switch protein flim [Alicycliphilus denitrificans
           BC]
 gi|317119069|gb|ADV01558.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
           BC]
          Length = 334

 Score = 36.4 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 15/70 (21%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE---- 131
            V +   L      +  L+ +  GD I LD+   E        +  A  E   + E    
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EP-------RIRASIEGVPVFECQYG 306

Query: 132 -DDTHFGVRV 140
             +  + +R+
Sbjct: 307 THNAKYAIRI 316


>gi|160939629|ref|ZP_02086977.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437420|gb|EDP15184.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
           BAA-613]
          Length = 296

 Score = 36.4 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 7   KISYIKDNLEGR-SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS 65
           ++  + + L  R +M +  P  +   S    +  +  +K D D           ++LE  
Sbjct: 172 ELEVVIEKLRARINMVMPAPNVEELTSKFGYSFAVSHKKQDEDKQKSKRHYIEQHLLES- 230

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
                      V+++ IL    +   +++ L+ GDVI L+K+V  +V + + +
Sbjct: 231 ----------EVELRAILHEFTLDAQDILQLAPGDVIPLNKKVDSAVSLYVED 273


>gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
 gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
          Length = 368

 Score = 36.4 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LI    V  + ILG   + ++  +NL +GD++ LD+   +   +TI+ +++   E+    
Sbjct: 254 LIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEV---G 310

Query: 131 EDDTHFGVRVIEILNA 146
                  +R+ E++ +
Sbjct: 311 LHRFRKSIRIEELIRS 326


>gi|268678938|ref|YP_003303369.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616969|gb|ACZ11334.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 353

 Score = 36.4 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           LI    V  + I+G   + +  L+ L KGD++ LD+   +   + I+ +++   EI
Sbjct: 252 LISRAEVFNEAIIGQAELSVGELLELKKGDIVRLDRAADDKAIVMIDKKELFLAEI 307


>gi|46410122|gb|AAS93912.1| RPP13-like protein [Arabidopsis arenosa]
          Length = 605

 Score = 36.4 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 20/41 (48%)

Query: 95  NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
           +L +   + L+K   E +++ +N+    K  + ++++    
Sbjct: 233 SLGETSEVELEKMAEEELEVYLNDILQGKKYLVVVDDIWEK 273


>gi|221633527|ref|YP_002522752.1| excinuclease ABC subunit B [Thermomicrobium roseum DSM 5159]
 gi|221157243|gb|ACM06370.1| excinuclease ABC, B subunit [Thermomicrobium roseum DSM 5159]
          Length = 668

 Score = 36.4 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 91  SNLVNLSKGDVITLDKRVGESVDI--------TINNQKIAKGEITIMEEDDTHFGVRV 140
            +++ L +G V+  DK +   VD+         +     A+G++  +      F VR+
Sbjct: 155 KSILALRRGQVVRRDKILRHLVDLQYDRNDMTLVRGTFRARGDLIEVFPAYEEFAVRI 212


>gi|224370777|ref|YP_002604941.1| FliM [Desulfobacterium autotrophicum HRM2]
 gi|223693494|gb|ACN16777.1| FliM [Desulfobacterium autotrophicum HRM2]
          Length = 326

 Score = 36.4 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           ++I+   V +++ LG+  +    L+ L  GDVI LD    + +   ++     +G
Sbjct: 252 EIILESTVNLRVQLGTTEISGERLIYLQPGDVIQLDNDAKDMLTGYVDGLPKVRG 306


>gi|91223552|ref|ZP_01258817.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
 gi|269965696|ref|ZP_06179809.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91191638|gb|EAS77902.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
 gi|269829764|gb|EEZ84000.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 348

 Score = 36.4 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S+   + IM+ PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L+ L  GD+I ++    E   + + +    +     M   +    V+
Sbjct: 260 RVNLLEKDISLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYR---VKMGRSEDKLAVQ 314

Query: 140 VIE 142
           + E
Sbjct: 315 ISE 317


>gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
 gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
          Length = 322

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+      + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDLLDVDVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    +++ +++++  GDVI ++
Sbjct: 259 LSATVARRQLRLRDILHMQPGDVIPVE 285


>gi|219566951|dbj|BAH04982.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
          Length = 354

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 34/126 (26%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           PL D + + P + +              P+                  + +PV +   L 
Sbjct: 249 PLTDDDDAYPHDFAAPRTPAGSSAGQGVPLEQ----------------LEVPVHL--ELA 290

Query: 85  SCCMQISNLVNLSKGDVITLDKRVGESV---DITIN----NQKIAKGEITIMEEDDTHFG 137
              M ++ L  L    V+TL       V   D+T+      Q +  G++  + E     G
Sbjct: 291 VMGMPLAELAALQPQHVLTL------PVKIRDVTVRLVCHGQTLGHGQLVAVGE---QLG 341

Query: 138 VRVIEI 143
           +++  I
Sbjct: 342 LQIASI 347


>gi|149203625|ref|ZP_01880594.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
 gi|149142742|gb|EDM30784.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
          Length = 334

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 47  VDNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
           + + +   S    N   ++  N + ++ N PV +  ++    + + +++ L  GD++   
Sbjct: 200 IASPARASSGKIANTKIEAPANLEQVVNNAPVMLDAVMARLRLPLRDILALKPGDLLPFQ 259

Query: 106 KRVGESVDITINNQKIA-KGEITIMEEDDTHFGVRVIEILN 145
           +      +   + Q +  +G I    E     G+R + +++
Sbjct: 260 R------ETLNDTQLVGTRGHIVATAELGQMNGLRALRLIS 294


>gi|255028845|ref|ZP_05300796.1| flagellar motor switch protein [Listeria monocytogenes LO28]
          Length = 85

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 52  EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           EP  +      + S    D   NI V + + LG   M + ++  LS GDV+ ++K
Sbjct: 13  EPKETPQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEK 64


>gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
 gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
          Length = 322

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+      + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVSVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    +++ +++++  GDVI ++
Sbjct: 259 LSATVARRQLKLRDVLHMQPGDVIPVE 285


>gi|225851080|ref|YP_002731314.1| hypothetical protein PERMA_1547 [Persephonella marina EX-H1]
 gi|225645615|gb|ACO03801.1| hypothetical protein PERMA_1547 [Persephonella marina EX-H1]
          Length = 106

 Score = 36.4 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133
           NIP+ + I L S  + +S++  + +   I + ++  + V++ +N + I KG   ++ +D 
Sbjct: 38  NIPLPVVIRLMSRDIPVSDIDRIGETTEILVSEKEEKDVELLVNGEIIGKG---VVFKDS 94

Query: 134 THFGVRVIEI 143
               +++ ++
Sbjct: 95  GSLKLKITDL 104


>gi|254228441|ref|ZP_04921867.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
 gi|262393595|ref|YP_003285449.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
 gi|151939029|gb|EDN57861.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
 gi|262337189|gb|ACY50984.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
          Length = 348

 Score = 36.0 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S+   + IM+ PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L+ L  GD+I ++    E   + + +    +     M   +    V+
Sbjct: 260 RVNLLEKDISLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYR---VKMGRSEDKLAVQ 314

Query: 140 VIE 142
           + E
Sbjct: 315 ISE 317


>gi|94984419|ref|YP_603783.1| hypothetical protein Dgeo_0311 [Deinococcus geothermalis DSM 11300]
 gi|94554700|gb|ABF44614.1| hypothetical protein Dgeo_0311 [Deinococcus geothermalis DSM 11300]
          Length = 1063

 Score = 36.0 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 34  PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93
           P   SE+L  + DV +++     D   + E +T+N       P  +++ L    ++I + 
Sbjct: 133 PGERSEVLQGRIDVADLAAATPLDLAAVAEMATEN-------PGTIKLPLAGSVIRIRDR 185

Query: 94  VNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +       + ++  +GE+ D+T+N   + +
Sbjct: 186 IT------VEVEAPLGETADLTVNGVPVGR 209


>gi|83646773|ref|YP_435208.1| flagellar motor switch protein FliM-like protein [Hahella
           chejuensis KCTC 2396]
 gi|83634816|gb|ABC30783.1| flagellar motor switch protein FliM-like protein [Hahella
           chejuensis KCTC 2396]
          Length = 252

 Score = 36.0 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
           K+ + L S  + I+ + +L  GDVI LD ++ E   + 
Sbjct: 187 KLSVRLNSVELTINEVTSLQAGDVIKLDHKLTEPALVF 224


>gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
 gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
          Length = 322

 Score = 36.0 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+      + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           M   +    +++ +++++  GDVI ++
Sbjct: 259 MTATVARRQLKLRDILHMQPGDVIPVE 285


>gi|238796112|ref|ZP_04639623.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC
           43969]
 gi|238720057|gb|EEQ11862.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC
           43969]
          Length = 303

 Score = 36.0 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           +D     E +      + E     FD +  + VK+  +LG   + +  L ++  G V  L
Sbjct: 193 DDTPEAEETLPRLDEVLPENVPRPFD-VAGVTVKLTFVLGHSDIPLQELAHIQPGAVYEL 251

Query: 105 DKRVGESVDITIN 117
                  V I  N
Sbjct: 252 GADKDREVKIYAN 264


>gi|149179192|ref|ZP_01857759.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
 gi|148841965|gb|EDL56361.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
          Length = 349

 Score = 36.0 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ-------IILGSCCMQISNLV 94
           I  N ++ +S  ++SD+ +  +K + +    +N+   +        + L +  +    ++
Sbjct: 224 IPFNTIEPLSNKLTSDTWSAYKKKSPDLRQQLNLEASVSKSKIAMRVELDNSKLTAGEVL 283

Query: 95  NLSKGDVITLDKRVGESVDITINNQKI 121
           NL+ GDVI  +K   +S+ + +    +
Sbjct: 284 NLAVGDVIMCNKGSAQSLTVELEGSPV 310


>gi|167034915|ref|YP_001670146.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
 gi|166861403|gb|ABY99810.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
          Length = 322

 Score = 36.0 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+      + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           M   +    +++ +++++  GDVI ++
Sbjct: 259 MTATVARRQLKLRDILHMQPGDVIPVE 285


>gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440]
 gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
 gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440]
 gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida]
 gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
 gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1]
          Length = 322

 Score = 36.0 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+      + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           M   +    +++ +++++  GDVI ++
Sbjct: 259 MTATVARRQLKLRDILHMQPGDVIPVE 285


>gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
 gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
          Length = 366

 Score = 36.0 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           LI    V  + ILG   + +S  ++L +GD++ LD+   +   + I+ +++   E+
Sbjct: 255 LIGRAEVLYEAILGKAIVSVSEFLDLKEGDIVRLDRSADDKAIVCIDKKEVFLAEV 310


>gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
 gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY]
 gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
 gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY]
          Length = 334

 Score = 36.0 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 15/72 (20%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE---- 131
            V +   L      +  L+ +  GD I L++   E        +  A  E   + E    
Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELER---EP-------RIRASIEGVPVFECQYG 306

Query: 132 -DDTHFGVRVIE 142
             ++ + +R+ E
Sbjct: 307 THNSKYAIRIEE 318


>gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 456

 Score = 36.0 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 53/141 (37%), Gaps = 7/141 (4%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70
           ++DN++     +     +   +     S  L +   +  +S  + +  N ++  +     
Sbjct: 184 LRDNMQHLEERVRERTSELQAAREMAESANLAKSEFLATMSHELRTPLNAVIGFTDVLLS 243

Query: 71  LIMNIPVKMQII-LGSCCMQISNLVNLSKG----DVITLDKRVGESVDITINNQKIAKGE 125
            I      +Q   LG       +L++L         I  D+   E  D+ I  +++A G 
Sbjct: 244 RIYGEVTDIQAEFLGYVLQSSRHLLSLINDILDLSKIEADRMELEPSDVDI--RQLASGS 301

Query: 126 ITIMEEDDTHFGVRVIEILNA 146
           + +++E      +R+ E +  
Sbjct: 302 LVMVKERAQQHRIRLTEEVAP 322


>gi|260222423|emb|CBA31972.1| Flagellar motor switch protein fliM [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 334

 Score = 36.0 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 7   KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE 63
           ++ Y +  ++ +  +I  P +    T+      +    I  +   +  EPI     +  +
Sbjct: 176 ELEYQRSEMQPQFANIATPSEIVISTSFQLEIGDITGAIHFSFPYSTLEPIRDVLYSSTQ 235

Query: 64  KSTDNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
             +   D          I    V +   L      +  L+ + KGD I LD+     +  
Sbjct: 236 GDSIEVDRRWVNVLTREIQAAEVTIVAELARADATVEQLLGMKKGDFIELDRAPR--IQA 293

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRV 140
           T++   I + +       ++ + +R+
Sbjct: 294 TVDGVPIFECQ---YGTHNSKYAIRI 316


>gi|148554378|ref|YP_001261960.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
 gi|148499568|gb|ABQ67822.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
          Length = 331

 Score = 36.0 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D I+    + ++    +        ++ + + ++ +L    M ++ L+ L  GDVI ++ 
Sbjct: 234 DQIAARTQAGADGDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDVIPVN- 292

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
            + ++V + + N++ A+G    + E D    + +
Sbjct: 293 -LSQTVPLLVGNRRFAEG---TIGEQDGRAALMI 322


>gi|32474773|ref|NP_867767.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
 gi|32445313|emb|CAD75314.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
          Length = 428

 Score = 36.0 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           ++ +     K  D+ D     PV + + L    ++ S+L++L+ GD+IT ++    ++++
Sbjct: 281 TNPTPQSRRKIADSIDA---APVDVVVTLARSKIRTSDLLDLNVGDIITTEQAASSALEL 337

Query: 115 TI 116
           ++
Sbjct: 338 SV 339


>gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
 gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
          Length = 334

 Score = 36.0 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134
            V +   L      +  L+ +  GD I LD+   E  +  +I    I + +       ++
Sbjct: 257 EVTLVAELAQADATVEQLLAMKPGDFIELDR---EPRIRASIGGVPIFECQ---YGTHNS 310

Query: 135 HFGVRVIE 142
            + +R+ E
Sbjct: 311 KYAIRIEE 318


>gi|225568550|ref|ZP_03777575.1| hypothetical protein CLOHYLEM_04627 [Clostridium hylemonae DSM
           15053]
 gi|225162778|gb|EEG75397.1| hypothetical protein CLOHYLEM_04627 [Clostridium hylemonae DSM
           15053]
          Length = 736

 Score = 36.0 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 90  ISNLVNLSKGDVITLDK---RVGESVDITINNQKIAKGEITIMEEDDTHF 136
           + ++++     V+ L K   + GES DI +N  KI +GE  +++     F
Sbjct: 462 LKDIIDAHCFSVVMLTKIFRQAGES-DIVVNAHKINRGEEVVLDNKSRDF 510


>gi|327540553|gb|EGF27130.1| flagellar motor switch protein fliM [Rhodopirellula baltica WH47]
          Length = 428

 Score = 36.0 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 55  SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           ++ +     K  D+ D     PV + + L    ++ S+L++L+ GD+IT ++    ++++
Sbjct: 281 TNPTPQSRRKIADSIDA---APVDVVVTLARSKIRTSDLLDLNVGDIITTEQAASSALEL 337

Query: 115 TI 116
           ++
Sbjct: 338 SV 339


>gi|190574232|ref|YP_001972077.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
           K279a]
 gi|190012154|emb|CAQ45777.1| putative flagellar motor switch protein FliM [Stenotrophomonas
           maltophilia K279a]
          Length = 334

 Score = 36.0 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           +   I SD N+  E         +NI  V +  +L S  M + +L  L  GD++ ++   
Sbjct: 228 LDAGIQSDRNDRDESWGKTLREQLNIAEVTLSSVLASKRMTLRDLTQLKVGDILPIELSP 287

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
              V   + N  +  GE  I    +    V++ 
Sbjct: 288 QVPV--CVENIPVFTGEFGIANGMN---AVKIT 315


>gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
           WM1]
 gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
           WM1]
          Length = 339

 Score = 36.0 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 56  SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115
            D  N  +   +  + I    + ++  +G   + + ++ NL  GDVI L       V + 
Sbjct: 244 GDEANSQDNKQEIMNSIKASDLLVRAQVGESMITLDDVYNLHVGDVINLGTPKDSDVQLY 303

Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIE 142
           +  Q   +G++ +      +  VR+ +
Sbjct: 304 VEGQPWFRGQLGV---HKRNVAVRIED 327


>gi|1066861|gb|AAB81317.1| Complete gene sequence under accession number M24465 [Salmonella
           enterica subsp. enterica serovar Typhimurium]
          Length = 32

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 3/26 (11%)

Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146
           IA+GE+ ++ +    +GVR+ +I+  
Sbjct: 1   IAQGEVVVVAD---KYGVRITDIITP 23


>gi|94986980|ref|YP_594913.1| putative translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731229|emb|CAJ54592.1| putative translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 360

 Score = 35.6 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            E +  N  +   + V +   +G     +S L +  +G   TL+  +   V ++  ++ I
Sbjct: 276 SESTIRNKSIEHPLEVPISFEIGKYNTTLSELEHFIEGHTFTLELDIHSPVILSFEDKTI 335

Query: 122 AKGEITIMEEDDTHFGVRVIE 142
             G   ++   +   G+R++E
Sbjct: 336 GTG---VLMNFNGVIGIRILE 353


>gi|254523832|ref|ZP_05135887.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
 gi|219721423|gb|EED39948.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
          Length = 334

 Score = 35.6 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDV--ITLDK 106
           +   I SD N+  E         +NI  V +  +L S  M + +L  L  GDV  I L+ 
Sbjct: 228 LDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLTRLKVGDVLPIELNP 287

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           +    V + + N  +  GE  I    +    V++ 
Sbjct: 288 Q----VPLCVENIPVFTGEFGIANGMN---AVKIT 315


>gi|153215435|ref|ZP_01950019.1| conserved domain protein [Vibrio cholerae 1587]
 gi|153827945|ref|ZP_01980612.1| conserved domain protein [Vibrio cholerae 623-39]
 gi|124114729|gb|EAY33549.1| conserved domain protein [Vibrio cholerae 1587]
 gi|148876526|gb|EDL74661.1| conserved domain protein [Vibrio cholerae 623-39]
          Length = 71

 Score = 35.6 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           + + + +++  C M +  L++L KG+++ ++  V  +V +   N+ IA G +  +++   
Sbjct: 1   MKIAIDVVIAHCSMTLDELLHLQKGNMVKVEDFVQSAVMLKSGNELIATGTLIKIDD--- 57

Query: 135 HFGVRVIEI 143
            F V +  +
Sbjct: 58  QFAVSIDNV 66


>gi|238897369|ref|YP_002923046.1| type III secretion system protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465124|gb|ACQ66898.1| type III secretion system protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 320

 Score = 35.6 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 33  SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92
           S T +++   +    ++  +  S D     E+       +      + + +G   + I +
Sbjct: 210 SDTESNDFSYKAPSDEDAPDASSPDVIPEFEEEPKKIS-LNEFTQTLVMEIGRINIPIQD 268

Query: 93  LVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140
           L  L  G  +       GE V I +N +KI  G +      D    VR+
Sbjct: 269 LNQLFVGKTLNCKTSFYGE-VMIRLNGRKIGSGNLL---NCDGELIVRI 313


>gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           stutzeri DSM 4166]
          Length = 279

 Score = 35.6 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 12/106 (11%)

Query: 46  DVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104
           D + + E  S  +   + +   N  D I ++PV++  ++ +  M ++ ++ L   D++ L
Sbjct: 182 DTELVDELTSRLAGPPVPRLPGNPIDHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML 241

Query: 105 DKRVGESVD---ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
                  +D   + IN QK+ +G    + E+D    +  +E +N Q
Sbjct: 242 -----RPLDRYEVRINQQKLFRG---TIFEEDGALFLTSLESVNPQ 279


>gi|254506968|ref|ZP_05119107.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
 gi|219550253|gb|EED27239.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
          Length = 349

 Score = 35.6 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  ST   + IM++PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVI 102
           ++ L    + + +L+ L  GD+I
Sbjct: 260 RVNLLEQDISLRDLMELRPGDII 282


>gi|104782811|ref|YP_609309.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
 gi|95111798|emb|CAK16522.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
          Length = 322

 Score = 35.6 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+      + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           M   +    +++ +++++  GDVI ++
Sbjct: 259 MSATVARRQLKLRDILHMQPGDVIPVE 285


>gi|111225322|ref|YP_716116.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152854|emb|CAJ64601.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 1291

 Score = 35.6 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 25  PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84
           P     V+S     E++ +   V + S+ ++S   +++ +      ++ ++PV     +G
Sbjct: 387 PATAGEVTSLVPLPEVVGEILGVGSKSKAVASQVTSLVSRLGPELGILGDVPVSAIAEVG 446

Query: 85  SCCMQISNLVNLSKGDVITLDKRVG 109
           S  + +  +  L +G+VI   ++ G
Sbjct: 447 SAEL-VEAISRLRRGEVI---RQAG 467


>gi|306820127|ref|ZP_07453775.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551905|gb|EFM39848.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 332

 Score = 35.6 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 63  EKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           EK   N +  +    ++   I+G   + + + + +  GDVI L+K+V E +++ +  +
Sbjct: 244 EKGKKNLESNVKKAKLEAVAIIGDTFITVEDFIFMQVGDVIKLNKKVDEELELKVAGK 301


>gi|114706761|ref|ZP_01439661.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
 gi|114537709|gb|EAU40833.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
          Length = 321

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 48  DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
           + +  P  S      E    NF+      + ++ +L    + ++ + +   G  + LD  
Sbjct: 218 EPLPLPQPSPDETWSEAMVRNFEKSG---LHLEAVLARKQVPLAEVAHFRVGQTLALDVM 274

Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           V E + +    + I K ++         +  R  E ++ 
Sbjct: 275 VSELITLECEGKPIFKSQV---GFSRGSYVARFEEAVDP 310


>gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
 gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
          Length = 349

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  ST   + IM++PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVI 102
           ++ L    + + +L+ L  GD+I
Sbjct: 260 RVNLLEQDISLRDLMELQPGDII 282


>gi|327441044|dbj|BAK17409.1| flagellar motor switch protein [Solibacillus silvestris StLB046]
          Length = 331

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 54  ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           + +++  I  + +   +  +    + +   LGS  + I + + ++ GDVI L +++   +
Sbjct: 236 MQTNTKEISPEQSKMLESRVKQAKLPIIAELGSSDITIEDFLTMAVGDVIPLKQKIENPL 295

Query: 113 DITI 116
            + +
Sbjct: 296 TLKV 299


>gi|260776477|ref|ZP_05885372.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607700|gb|EEX33965.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 351

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  ST   + IM++PV  
Sbjct: 206 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 261

Query: 80  QIILGSCCMQISNLVNLSKGDVI 102
           ++ L    + + +L+ L  GD+I
Sbjct: 262 RVNLLEQDISLRDLMELQPGDII 284


>gi|229591843|ref|YP_002873962.1| flagellar motor switch protein FliM [Pseudomonas fluorescens SBW25]
 gi|229363709|emb|CAY51095.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
          Length = 322

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+      + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDLLDVDVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    +++ +++++  GD+I ++
Sbjct: 259 LSATVARRQLRLRDILHMQPGDIIPVE 285


>gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
           ATCC 25259]
          Length = 334

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            V++   LG+  + + ++VNL  GDVI LD
Sbjct: 257 EVEIVADLGTAEVSLRDIVNLKVGDVIPLD 286


>gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
          Length = 326

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D       I SD +++ E+      D +    V+
Sbjct: 207 IELDGGGGDLHVTMPYSMIEPMRELLDAG-----IQSDRSDVDERWIRALRDEVKAAEVE 261

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           +  +L    + + +++ L  GD+I +D  + E V +      + +G+  + +  +    +
Sbjct: 262 LSSMLTETTLSLEDVMRLKPGDIIPID--LPEQVLLRAEGIPVLRGKFGVSDGYN---AI 316

Query: 139 RVIE 142
           +V E
Sbjct: 317 KVTE 320


>gi|91776323|ref|YP_546079.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
           KT]
 gi|91710310|gb|ABE50238.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
           KT]
          Length = 335

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 7   KISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-----NISEPISSDSNNI 61
           +  YI+  +  +  +I  P  +  V S T N E+     ++      ++ EPI     + 
Sbjct: 175 EFEYIRSEMNTQFANIATP--NEVVVSTTFNIELGSASGEIHFCFPYSMIEPIRDLLTSP 232

Query: 62  LEKSTDNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112
           L+      D          I +  V +   L    M + +++N+  GDVI L   + E +
Sbjct: 233 LQGEALGVDKRWVRLMTQQIQSAEVMLIADLAKAEMTLGDILNMKVGDVIPL--SISEEI 290

Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +  ++N  + + +       +  + +RV ++L +
Sbjct: 291 EAKVDNVPVMQCK---YGVFNGQYALRVEKLLRS 321


>gi|70729040|ref|YP_258774.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
 gi|68343339|gb|AAY90945.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
          Length = 322

 Score = 35.6 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+ +    + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWSKALREDVLDVAVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    +++ +++++  GDVI ++
Sbjct: 259 LSATVARRQLRLRDILHMQPGDVIPVE 285


>gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
           19624]
 gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
           19624]
          Length = 331

 Score = 35.6 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V +   L      +  L+ +  GD I L+++    ++ TI+   + + +       +  +
Sbjct: 258 VTLVAELARANTTVEELLAMKVGDFIELERQPR--IEATISGVPVFECQ---YGTHNAKY 312

Query: 137 GVRV 140
            +R+
Sbjct: 313 AIRI 316


>gi|114764585|ref|ZP_01443789.1| hypothetical protein 1100011001360_R2601_26946 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542961|gb|EAU45981.1| hypothetical protein R2601_26946 [Roseovarius sp. HTCC2601]
          Length = 175

 Score = 35.6 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIM 73
              ++   P  + N   P   +       D    + P +    ++L      T N     
Sbjct: 4   KSKINEPGPKAEDNAPKPAAEA-PRAPSGDFKPSTPPKAKPPASVLSSDLHITGNLKTTG 62

Query: 74  NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123
           +I V+  +  G      ++L+ + +   I  +       D+ IN + + +
Sbjct: 63  DIQVEGTVE-GDIR---AHLLTIGESATIKGEVVAD---DVVINGRIVGR 105


>gi|51246520|ref|YP_066404.1| flagellar motor switch protein (FliM) [Desulfotalea psychrophila
           LSv54]
 gi|50877557|emb|CAG37397.1| related to flagellar motor switch protein (FliM) [Desulfotalea
           psychrophila LSv54]
          Length = 323

 Score = 35.6 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 78  KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137
            +    G   + + +++ L  GD++ +D    + + + + N     G   I    +    
Sbjct: 260 DITAQPGRLELSVGDILGLQVGDILEVDYDPSKPLKVLVENSPKFYG---IPGTHNGKKA 316

Query: 138 VRVIE 142
           + + E
Sbjct: 317 ISLTE 321


>gi|85711955|ref|ZP_01043009.1| hypothetical protein OS145_12679 [Idiomarina baltica OS145]
 gi|85694141|gb|EAQ32085.1| hypothetical protein OS145_12679 [Idiomarina baltica OS145]
          Length = 314

 Score = 35.2 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG----ESVDITINNQKIAKGEI 126
           ++ ++ V   I  G+  + +  L+ +    V    K         ++ ++N   I  GE 
Sbjct: 37  MLGDVEVT-AISDGTTELPVHQLLQMDADKVRE--KLAEFYRQSPLETSVNAYLINDGES 93

Query: 127 TIMEED--DTHFGVRVIEIL 144
            I+ +    + FG  +  ++
Sbjct: 94  LILIDTGAGSMFGASLGNLV 113


>gi|300693807|ref|YP_003749780.1| type III secretion system apparatus protein hrcq [Ralstonia
           solanacearum PSI07]
 gi|299075844|emb|CBJ35153.1| type III secretion system apparatus protein HrcQ [Ralstonia
           solanacearum PSI07]
          Length = 355

 Score = 35.2 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITINNQKIAKGEITIME 130
           +  + V + + L    M +S L  L    V+TL  K    +V +  + Q +  G++  + 
Sbjct: 279 LEQLEVPVHLELAVMGMPLSELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338

Query: 131 EDDTHFGVRVIEI 143
           E     G+++  I
Sbjct: 339 E---QLGLQIASI 348


>gi|27365287|ref|NP_760815.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
 gi|37680658|ref|NP_935267.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
 gi|320155671|ref|YP_004188050.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
 gi|27361434|gb|AAO10342.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
 gi|37199407|dbj|BAC95238.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
 gi|319930983|gb|ADV85847.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
          Length = 347

 Score = 35.2 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S+   + IM+ PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L+ L  GDVI ++     +V + +      +     M + +    V+
Sbjct: 260 RVNLLEKDISLRDLMELRPGDVIPIE-MPKHAV-MFVEELPTYR---VKMGQSNEKLAVQ 314

Query: 140 VIE 142
           + E
Sbjct: 315 ISE 317


>gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium
           HP15]
          Length = 332

 Score = 35.2 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 48  DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D +   + SD +++ E+  +   + I  + V +   +    + + ++  +  GD+I ++ 
Sbjct: 225 DVLDAGVQSDIDDVDERWVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVE- 283

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            + E + +T N   I K     +   D    +R+ E
Sbjct: 284 -IPEHLTVTANGIPIYKA---TLGTRDGKLALRIHE 315


>gi|260767962|ref|ZP_05876896.1| putative flagellar motor switch protein [Vibrio furnissii CIP
           102972]
 gi|260615992|gb|EEX41177.1| putative flagellar motor switch protein [Vibrio furnissii CIP
           102972]
          Length = 256

 Score = 35.2 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           PV++ ++L    M +S+++ L+  D++ +D      V I
Sbjct: 189 PVRLNVLLSKKTMPLSDVLRLTPNDILPIDLLSTVPVSI 227


>gi|149914719|ref|ZP_01903249.1| hypothetical protein RAZWK3B_14039 [Roseobacter sp. AzwK-3b]
 gi|149811512|gb|EDM71347.1| hypothetical protein RAZWK3B_14039 [Roseobacter sp. AzwK-3b]
          Length = 183

 Score = 35.2 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 18/120 (15%)

Query: 9   SYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS--- 65
            + K  +   +   ++P Q    S+P  +++     ++    S P +    ++L      
Sbjct: 1   MFSKSKINDPAPKAEDPRQ---TSTPDRSADTSYSGSEFKA-SAPKAKPPASVLSADLHI 56

Query: 66  TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV--DITINNQKIAK 123
           T N     +I V+  +  G      ++L+ + +G  I      GE V  D+ IN + + +
Sbjct: 57  TGNLKTTGDIQVEGTVE-GDIR---AHLLTVGEGATIK-----GEIVADDVVINGRIVGR 107


>gi|157164910|ref|YP_001467212.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
 gi|112799933|gb|EAT97277.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
          Length = 367

 Score = 35.2 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126
           LI    V  + ILG   + ++  +NL +GD++ LD+   +   + I+ +++   E+
Sbjct: 255 LIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRGADDKAIVCIDKKEVFLAEV 310


>gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
 gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
          Length = 315

 Score = 35.2 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 48  DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
             +++P     +     +  + +  I +  V +  +L    + +  ++    G VI L  
Sbjct: 204 AQLAQPFLGGRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGM 263

Query: 107 RVGESVDITINNQKI 121
            V   V   +N Q +
Sbjct: 264 TVDTPVVGMVNAQPM 278


>gi|110680043|ref|YP_683050.1| hypothetical protein RD1_2838 [Roseobacter denitrificans OCh 114]
 gi|109456159|gb|ABG32364.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 382

 Score = 35.2 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 48  DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
             + E  SS+S      S    +  +M +  ++  +L    + +S +  L  G  +++  
Sbjct: 191 KAVPERQSSESETADPGSPATLEKSVMAVTAELSAVLCRVRVSLSEMSRLRPGHTLSIPA 250

Query: 107 RVGESVDIT-INNQKIAKG 124
              ESV++  I   ++A+G
Sbjct: 251 NAFESVELLSIEGARVARG 269


>gi|116624443|ref|YP_826599.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227605|gb|ABJ86314.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 293

 Score = 35.2 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 23/41 (56%)

Query: 87  CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
            + + +L++L +G+++T D  V   +++ +N      G++ 
Sbjct: 217 TLSVGDLLSLREGNLLTFDFPVERPIELVVNGACKFTGQVV 257


>gi|57241942|ref|ZP_00369882.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           RM3195]
 gi|315638332|ref|ZP_07893512.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           JV21]
 gi|57017134|gb|EAL53915.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           RM3195]
 gi|315481599|gb|EFU72223.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           JV21]
          Length = 360

 Score = 35.2 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119
           LI    V  + ILG   + ++  + L +GD++ LD+   +   ++I+ +
Sbjct: 254 LIGRAEVVYEAILGKTLINVNEFLELKQGDILRLDREADDKAVVSIDKK 302


>gi|225871935|ref|YP_002753389.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793506|gb|ACO33596.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
          Length = 116

 Score = 35.2 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 35  TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI-------PVKMQIILGSCC 87
           TN +  L +      +  P   DS    E  T +  L   I       P++++I L    
Sbjct: 3   TNTTTALEETTSSTALLAPAQGDSPLEAEAETASLSLRRTIEERVTQAPLRLEIRLPIRG 62

Query: 88  MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
           +++ +++ L KG +        E +      Q++   E  ++++      VRV 
Sbjct: 63  LRVKDVLALRKGAIFETQWPADEDIPGDCGGQQLVWAEFEVIDK---KLAVRVT 113


>gi|332524239|ref|ZP_08400465.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
           JA2]
 gi|332107574|gb|EGJ08798.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
           JA2]
          Length = 334

 Score = 35.2 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 7   KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE 63
           ++ Y +  ++ +  +I  P +    T  +    ++   +      +  EPI     + ++
Sbjct: 176 ELEYQRSEMQPQFANIATPSEIVVSTAFTLEIGDTSGAVHFCIPYSTLEPIRDVLYSTIQ 235

Query: 64  KSTDNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105
             +   D          I    V +   LG     +  L++   GD I LD
Sbjct: 236 GDSAEPDRRWVNLLKHQIQAAEVDLVAELGHAPATVEQLLSFKPGDFIELD 286


>gi|330880582|gb|EGH14731.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 242

 Score = 35.2 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 124 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWINALKEDVLDVNVP 178

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           +   +    + + +++++  GDVI ++  + ES+ +  N 
Sbjct: 179 LTTTIAQRQLPLRDILHMRPGDVIPVE--LSESLVMRANG 216


>gi|21242691|ref|NP_642273.1| flagellar motor switch protein FliM [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294664066|ref|ZP_06729468.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21108164|gb|AAM36809.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292606169|gb|EFF49418.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 337

 Score = 35.2 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V +  +L S  M +  L  L  GD++ +D      +   + +  +  GE  +   ++  
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312

Query: 136 FGVRVIEI 143
             V++  +
Sbjct: 313 -AVKITAV 319


>gi|325928696|ref|ZP_08189868.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
 gi|325540928|gb|EGD12498.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
          Length = 337

 Score = 35.2 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V +  +L S  M +  L  L  GD++ +D      +   + +  +  GE  +   ++  
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312

Query: 136 FGVRVIEI 143
             V++  +
Sbjct: 313 -AVKITAV 319


>gi|153834156|ref|ZP_01986823.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
 gi|156975423|ref|YP_001446330.1| flagellar motor switch protein FliM [Vibrio harveyi ATCC BAA-1116]
 gi|148869526|gb|EDL68524.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
 gi|156527017|gb|ABU72103.1| hypothetical protein VIBHAR_03154 [Vibrio harveyi ATCC BAA-1116]
          Length = 348

 Score = 35.2 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S+   + IM+ PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           ++ L    + + +L+ L  GDVI ++
Sbjct: 260 RVNLLEKDISLRDLMELQPGDVIPIE 285


>gi|194365650|ref|YP_002028260.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
           R551-3]
 gi|194348454|gb|ACF51577.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
           R551-3]
          Length = 334

 Score = 35.2 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           +   I SD N+  E         +NI  V +  +L S  M + +L  L  GD++ ++   
Sbjct: 228 LDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLTQLKVGDILPIELSP 287

Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141
              +   + N  +  GE  I    +    V++ 
Sbjct: 288 QVPL--CVENIPVFTGEFGIANGMN---AVKIT 315


>gi|300697462|ref|YP_003748123.1| type III secretion system apparatus protein HrcQ [Ralstonia
           solanacearum CFBP2957]
 gi|299074186|emb|CBJ53731.1| type III secretion system apparatus protein HrcQ [Ralstonia
           solanacearum CFBP2957]
          Length = 355

 Score = 34.8 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITINNQKIAKGEITIME 130
           +  + V + + L    M ++ L  L    V+TL  K    +V +  + Q +  G++  + 
Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338

Query: 131 EDDTHFGVRVIEI 143
           E     G+++  I
Sbjct: 339 E---QLGLQIASI 348


>gi|78047547|ref|YP_363722.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035977|emb|CAJ23668.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 337

 Score = 34.8 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V +  +L S  M +  L  L  GD++ +D      +   + +  +  GE  +   ++  
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312

Query: 136 FGVRVIEI 143
             V++  +
Sbjct: 313 -AVKITAV 319


>gi|171322881|ref|ZP_02911586.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171091755|gb|EDT37285.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 70

 Score = 34.8 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFG 137
           M + + +  + I+ L  L  G V+ L     +  V +    Q I  G +  +     H G
Sbjct: 1   MHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLG 57

Query: 138 VRV 140
           VR+
Sbjct: 58  VRI 60


>gi|222823278|ref|YP_002574851.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
 gi|222538499|gb|ACM63600.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
          Length = 363

 Score = 34.8 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130
           LI    V  + +LG   + ++  ++L +GD++ LD+   +   + I+ +     E+ + +
Sbjct: 255 LIGRAEVIYEAMLGKTFINVNEFLDLKQGDILKLDRSADDKAIVAIDKK-----EVFLAQ 309

Query: 131 EDDTHF--GVRVIEILNA 146
                F   ++++E++  
Sbjct: 310 VGLHRFRKSIKILELIKT 327


>gi|269961627|ref|ZP_06175989.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
 gi|269833668|gb|EEZ87765.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
          Length = 348

 Score = 34.8 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S+   + IM+ PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           ++ L    + + +L+ L  GDVI ++
Sbjct: 260 RVNLLEKDISLRDLMELQPGDVIPIE 285


>gi|85710186|ref|ZP_01041251.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
 gi|85688896|gb|EAQ28900.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
          Length = 343

 Score = 34.8 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +P+ ++ ++G   + +  L  L  GD I L       +   I     A+G++      D+
Sbjct: 239 MPLTLEAVVGEIDLTLGRLEQLRPGDKIPLTISRDLPL--RIGETVFARGKV---GRLDS 293

Query: 135 HFGVRVI 141
           +  +RV 
Sbjct: 294 NLALRVT 300


>gi|301764120|ref|XP_002917494.1| PREDICTED: LOW QUALITY PROTEIN: stromal membrane-associated protein
           1-like [Ailuropoda melanoleuca]
          Length = 403

 Score = 34.8 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 14  NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISE-PISSDSNNILEKSTDNFDLI 72
             E      D  ++    +SP   +E  I  + +D  +E P+++ S    +   D+ D I
Sbjct: 158 TTEKLQKTEDQQMELKKSTSPKKAAEPTIDLSGLDGPAEAPVTNGSTTTGQAPNDDLD-I 216

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVI 102
             +P+ +   L +   +++    LSK  ++
Sbjct: 217 FGVPLDLFTELATKSKEVAK-KQLSKDSIL 245


>gi|50557178|ref|XP_505997.1| YALI0F28589p [Yarrowia lipolytica]
 gi|49651867|emb|CAG78809.1| YALI0F28589p [Yarrowia lipolytica]
          Length = 454

 Score = 34.8 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 2   IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61
           IK   +++  K+ +      +   L D  +     + E    K  +     P+S+  +  
Sbjct: 113 IKGSYELATGKEMVSRDPKVLKAELADALLKWKAVDFETEAAKRRL-----PVSAVRSYS 167

Query: 62  LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
                 N DL+ + PV +     S  + ++  + LS   V+ L++ +       +  + +
Sbjct: 168 EWDEDKNVDLL-DFPVTITKTGDSSVIPLNGPLALSGEKVLELNRVIAAP----VCGKVL 222

Query: 122 A 122
           A
Sbjct: 223 A 223


>gi|319790436|ref|YP_004152069.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
           HB-1]
 gi|317114938|gb|ADU97428.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
           HB-1]
          Length = 347

 Score = 34.8 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 23/47 (48%)

Query: 70  DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116
           + ++   +++ + L      +  +++  +GD + LD   G+ + + +
Sbjct: 241 EKLLKTNLRVWLELTRKKFSVKEVLSWKEGDKLQLDVSKGDLLKLYV 287


>gi|153854475|ref|ZP_01995753.1| hypothetical protein DORLON_01748 [Dorea longicatena DSM 13814]
 gi|149753001|gb|EDM62932.1| hypothetical protein DORLON_01748 [Dorea longicatena DSM 13814]
          Length = 738

 Score = 34.8 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 16/133 (12%)

Query: 13  DNLEGRSMHIDNPLQDT------NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
             +        NP  +T      N  +P     ++I  +++  +  P+     N +   T
Sbjct: 385 QTIHRLLEVSGNPDDETIGGFQRNAENPLEADVVII--DEMSMVDLPLMYALLNAIVPGT 442

Query: 67  DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK---RVGESVDITINNQKIAK 123
               L+ ++     +  GS    + ++++     V+ L K   + GES DI +N  KI +
Sbjct: 443 RVI-LVGDVNQLPSVGPGSV---LKDIISSECFSVVKLTKIFRQAGES-DIIVNAHKINR 497

Query: 124 GEITIMEEDDTHF 136
           GE  +++     F
Sbjct: 498 GEPVVLDNKSMDF 510


>gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 322

 Score = 34.8 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWINALKEDVLDVNVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           +   +    + + +++++  GDVI ++  + ES+ +  N 
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE--LSESLVMRANG 296


>gi|119503672|ref|ZP_01625755.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460734|gb|EAW41826.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
          Length = 323

 Score = 34.8 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES--VDITINNQKIAKGEITIMEED 132
           I V++  ++      + NL+    G VI +D    E     + +  + IA+G+       
Sbjct: 256 IDVELCGVVSLLETSLRNLLAFKVGTVIPID----EPQTAQLMVEGRGIARGK---YGAH 308

Query: 133 DTHFGVRVIEILNAQ 147
           D+   V++ +   ++
Sbjct: 309 DSSRAVQITDFSRSK 323


>gi|315179666|gb|ADT86580.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
           11218]
          Length = 272

 Score = 34.8 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           PV++ ++L    M +S ++ L+  D++ +D      V I
Sbjct: 205 PVRLNVLLSKKTMPLSEVLRLTPNDILPIDLLSTVPVSI 243


>gi|126741268|ref|ZP_01756947.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
 gi|126717673|gb|EBA14396.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
          Length = 458

 Score = 34.8 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 50  ISEPISSDSNNILEKSTDNFDLIM-NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108
           + EP   +       +  +    M N+  ++  +L    + ++ L NL  GDVI L++  
Sbjct: 201 LPEPTPEELGLAGAAAGPSLGSSMGNLRAELSAVLCKMRLPLNELSNLKPGDVIPLEQAF 260

Query: 109 GESVD-ITINNQKIAKGEITIMEEDDTHFGVRVIE 142
               D I+I  Q IA+G++    + +    VR+ E
Sbjct: 261 LYETDLISIGGQSIAQGKL---GQMNGSRAVRLNE 292


>gi|187920207|ref|YP_001889238.1| shikimate 5-dehydrogenase [Burkholderia phytofirmans PsJN]
 gi|187718645|gb|ACD19868.1| shikimate 5-dehydrogenase [Burkholderia phytofirmans PsJN]
          Length = 277

 Score = 34.4 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
           G+ M++  P +    +     SE    +  +   +  +  +   I  ++ D   L+ +I 
Sbjct: 59  GKGMNVTAPFKLKAFAMADERSE----RAQLAGAANALKFEDGRIAAENFDGVGLVRDIE 114

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
           V + + +    + +       +G ++         V++ I N+ +AK E  +
Sbjct: 115 VNLDLPMAGKRVLVLGAGGAMRGALLPF--LAARPVELVIANRDVAKAEALV 164


>gi|88704280|ref|ZP_01101994.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
 gi|88701331|gb|EAQ98436.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
          Length = 327

 Score = 34.4 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124
           I +++  +L +  + +++L+ L  G VI L     E V + ++N  +A+G
Sbjct: 255 IELEVAGVLATQSIALADLLELEAGAVIPL--APAEQVSLKVDNVTLAEG 302


>gi|30248480|ref|NP_840550.1| flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
           19718]
 gi|30138366|emb|CAD84375.1| Flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
           19718]
          Length = 330

 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLD 105
            +++   LG   + +  ++N+ +GDVI LD
Sbjct: 261 EIEIIANLGQTQVTLHQILNMQEGDVIALD 290


>gi|171057710|ref|YP_001790059.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
 gi|170775155|gb|ACB33294.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
          Length = 334

 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 7   KISYIKDNLEGRSMHIDNPLQDTNVSS-------PTNNSEMLIQKNDVDNISEPISSDSN 59
           ++ Y +  ++ +  +I  P +    +S        T      I    ++ I + + S + 
Sbjct: 176 ELEYQRSEMQPQFANIAAPGEIVVTTSFTLEIGDATGTIHFCIPYATLEPIRDVLYSSTQ 235

Query: 60  NILEKSTDNFDLIMN-----IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
               +    +  +M        V++   L      +  L+ L  GD I LD    +S+++
Sbjct: 236 GDSAEPDRRWVKLMTHQIQAAQVQLVAELAHAPATVEQLLALKAGDFIELDLI--KSIEV 293

Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            ++   + + +       +  + ++V  +L  Q
Sbjct: 294 KVDGVPVMEAQ---YGTSNGKYALKVDRMLTNQ 323


>gi|322435511|ref|YP_004217723.1| Glutamate synthase (ferredoxin) [Acidobacterium sp. MP5ACTX9]
 gi|321163238|gb|ADW68943.1| Glutamate synthase (ferredoxin) [Acidobacterium sp. MP5ACTX9]
          Length = 1516

 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 20   MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM---NIP 76
              +D P  D +  +P       I +    ++   I++    +  +      L+      P
Sbjct: 1254 QPVDGPPLDESWVAPAL---AAIAEGKAYSVEAQIANCDRAVGARLAGEIALLRAQAETP 1310

Query: 77   VKMQIIL-GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128
            V + + L G+        +   +G V+ LD +  + V      + ++ GE+ I
Sbjct: 1311 VDVSLKLHGTAGQSFGAFL--VEGMVLELDGQANDFV-----GKGLSGGEVVI 1356


>gi|323456061|gb|EGB11928.1| hypothetical protein AURANDRAFT_20268 [Aureococcus anophagefferens]
          Length = 1143

 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQI------ILGSCCMQISNLVNLSKGDVITLDKR 107
           I++ S N    + +  D + + PV + +       L S  + + +++ L+ GDV+  D R
Sbjct: 229 IAAASENAANGALEALDALSS-PVSVAVRDGEEVELDSTQLVVGDVILLATGDVVPADCR 287

Query: 108 VGESVDITINNQKIAKGE 125
           V  + D+ +N   +  GE
Sbjct: 288 VVRAADLKVNEMLL-TGE 304


>gi|47222360|emb|CAG05109.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1228

 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 14  NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73
           ++   +++ D P ++  VS P   ++           +EP+  D    LE+     DL+ 
Sbjct: 258 DVTEETLYGDFPDENAAVSGPAAPAQSADPACPPG--TEPLEEDERQALEEYEKMQDLLK 315

Query: 74  NIPVKMQI-ILGSCCMQISNLVNLSKG 99
            I + + +  +G    +    +  +KG
Sbjct: 316 TIGLDLGVAEIGRMAARTKERLQGNKG 342


>gi|5679187|gb|AAD46901.1|AF160974_4 HrcQ homolog [Xanthomonas campestris pv. glycines]
 gi|30524903|gb|AAP34348.1|AF499777_16 HrcQ [Xanthomonas axonopodis pv. glycines]
          Length = 304

 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117
           +    +   +   +  + + +Q+ +    + +S L  L  G ++ L   V ++ + + + 
Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            Q I  G +  + E   H GV+++ +  +
Sbjct: 274 GQTIGIGRLVTVGE---HLGVQILSMSES 299


>gi|283781536|ref|YP_003372291.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
 gi|283439989|gb|ADB18431.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
          Length = 362

 Score = 34.4 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
            V++ + L    +   +++ L  GD+IT DK +   ++I +  
Sbjct: 272 KVELVVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQG 314


>gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
           SV96]
 gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
           SV96]
          Length = 331

 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 45  NDVDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103
             +  + + ISSDS  +           ++   V +  +L    M I +++ L KGDVI 
Sbjct: 234 EPIRELLDAISSDSGEVDGGWQAALRGEVLRAEVSINSLLVEKNMTIRDVMRLKKGDVIP 293

Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146
           +D    ++V +      + +G++      D ++ +++I+ + +
Sbjct: 294 IDMP--DTVILKAEGIPVFEGKV---GISDGNYAIQIIDKVKS 331


>gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
 gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
          Length = 349

 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D ++  P +  E + +  D    S+ + +D    +  ST   + IM++PV  
Sbjct: 204 VEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139
           ++ L    + + +L+ L  GDVI + K    +V + + +    +     M        V+
Sbjct: 260 RVNLLEMDIALRDLMELQVGDVIPI-KMPEHAV-MFVEDLPTYR---VKMGRSGEKLAVQ 314

Query: 140 VIEILN 145
           V E + 
Sbjct: 315 VSEKIK 320


>gi|323493118|ref|ZP_08098249.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
           20546]
 gi|323312589|gb|EGA65722.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
           20546]
          Length = 272

 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI----TINNQKIAK-GEITIME 130
           PVK+ ++L    M +S+L++L   D++ ++      V I      N     K G++ ++ 
Sbjct: 205 PVKLNVLLSQKRMPLSDLLSLQANDILPIELLSTVPVSIGDQHLFNGSVAEKEGQLVLII 264

Query: 131 EDD 133
             D
Sbjct: 265 NHD 267


>gi|207739217|ref|YP_002257610.1| hrp protein hrcq [Ralstonia solanacearum IPO1609]
 gi|206592590|emb|CAQ59496.1| hrp conserved protein hrcq [Ralstonia solanacearum IPO1609]
          Length = 362

 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 16/79 (20%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV---DITIN----NQKIAKG 124
           +  + V + + L    M ++ L  L    V+TL       V   D+T+      Q +  G
Sbjct: 286 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTL------PVKIRDVTVRLVCHGQTLGHG 339

Query: 125 EITIMEEDDTHFGVRVIEI 143
           ++  + E     G+++  I
Sbjct: 340 QLVAVGE---QLGLQIASI 355


>gi|83747859|ref|ZP_00944892.1| HrcQ [Ralstonia solanacearum UW551]
 gi|83725506|gb|EAP72651.1| HrcQ [Ralstonia solanacearum UW551]
          Length = 355

 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 16/79 (20%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV---DITIN----NQKIAKG 124
           +  + V + + L    M ++ L  L    V+TL       V   D+T+      Q +  G
Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTL------PVKIRDVTVRLVCHGQTLGHG 332

Query: 125 EITIMEEDDTHFGVRVIEI 143
           ++  + E     G+++  I
Sbjct: 333 QLVAVGE---QLGLQIASI 348


>gi|57168742|ref|ZP_00367873.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
 gi|305432516|ref|ZP_07401678.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
 gi|57019789|gb|EAL56472.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
 gi|304444555|gb|EFM37206.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
          Length = 358

 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           LI    V  + ILG   + +   + L +GD++ LD+   +
Sbjct: 253 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 292


>gi|153951200|ref|YP_001397325.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938646|gb|ABS43387.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 359

 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           LI    V  + ILG   + +   + L +GD++ LD+   +
Sbjct: 254 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 293


>gi|87119476|ref|ZP_01075373.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
 gi|86164952|gb|EAQ66220.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
          Length = 322

 Score = 34.1 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136
           V++   +    + + +++    GD+I +D  + E + +  N     KG++ +  E    +
Sbjct: 256 VELSAAVAHVDVPLQDVLKFKAGDIIPVD--IPEFITVRANGLPTIKGKLGVSNE---KY 310

Query: 137 GVRVIE 142
            V+V+E
Sbjct: 311 SVQVVE 316


>gi|330902572|gb|EGH33587.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 244

 Score = 34.1 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 154 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 208

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    + + +++++  GDVI ++
Sbjct: 209 LTTTIAQRQLPLRDILHMRPGDVIPVE 235


>gi|294665991|ref|ZP_06731254.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604239|gb|EFF47627.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 304

 Score = 34.1 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117
           +    +   +   +  + + +Q+ +    + +S L  L  G ++ L   V ++ + + + 
Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273

Query: 118 NQKIAKGEITIMEEDDTHFGVRV 140
            Q I  G +  + E   H GV++
Sbjct: 274 GQTIGIGRLVTVGE---HLGVQI 293


>gi|283955445|ref|ZP_06372943.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793072|gb|EFC31843.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 359

 Score = 34.1 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           LI    V  + ILG   + +   + L +GD++ LD+   +
Sbjct: 254 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 293


>gi|57237070|ref|YP_178082.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
 gi|86149575|ref|ZP_01067805.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86151492|ref|ZP_01069707.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86154028|ref|ZP_01072229.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88597737|ref|ZP_01100970.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|121613064|ref|YP_999786.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|148926866|ref|ZP_01810544.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157414374|ref|YP_001481630.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|167004761|ref|ZP_02270519.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|205356443|ref|ZP_03223207.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561745|ref|YP_002343524.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|283955504|ref|ZP_06372999.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|315123665|ref|YP_004065669.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|57165874|gb|AAW34653.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
 gi|85839843|gb|EAQ57102.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85841839|gb|EAQ59086.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85842442|gb|EAQ59656.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87248986|gb|EAQ71948.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|88190041|gb|EAQ94017.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359451|emb|CAL34234.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|145844443|gb|EDK21551.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157385338|gb|ABV51653.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205345630|gb|EDZ32269.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|283792965|gb|EFC31739.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|284925356|gb|ADC27708.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|307747020|gb|ADN90290.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315017387|gb|ADT65480.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315057501|gb|ADT71830.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927743|gb|EFV07070.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929164|gb|EFV08389.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931622|gb|EFV10587.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 359

 Score = 34.1 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 71  LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110
           LI    V  + ILG   + +   + L +GD++ LD+   +
Sbjct: 254 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 293


>gi|28899016|ref|NP_798621.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837001|ref|ZP_01989668.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
 gi|260365238|ref|ZP_05777795.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
 gi|260878788|ref|ZP_05891143.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AN-5034]
 gi|260897383|ref|ZP_05905879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           Peru-466]
 gi|260899942|ref|ZP_05908337.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ4037]
 gi|4322004|gb|AAD15907.1| polar flagellar switch protein FliM [Vibrio parahaemolyticus]
 gi|28807235|dbj|BAC60505.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749774|gb|EDM60519.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
 gi|308088268|gb|EFO37963.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           Peru-466]
 gi|308094184|gb|EFO43879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AN-5034]
 gi|308107409|gb|EFO44949.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ4037]
 gi|308115479|gb|EFO53019.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
 gi|328474447|gb|EGF45252.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 10329]
          Length = 348

 Score = 34.1 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +V  P +  E + +  D    S+ + +D    +  S+   + IM+ PV  
Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
           ++ L    + + +L+ L  GD+I ++
Sbjct: 260 RVNLLEKDISLRDLMELQPGDIIPIE 285


>gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
 gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
          Length = 332

 Score = 34.1 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 48  DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D +   + SD +++ E+  +   + I  + V +   +    + + ++  +  GDVI ++ 
Sbjct: 225 DVLDAGVQSDIDDVDERWVNALQEDIKEVNVPINTTVCRRRISLRDIARMKAGDVIPVE- 283

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
            + E + +T N   I K     +   D    +R+ +
Sbjct: 284 -IPEHLTVTANGIPIYKA---TLGTRDGKLALRIHD 315


>gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 337

 Score = 34.1 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V +  +L S  M +  L  L  GDV+ ++      +   + +  +  GE  +   ++  
Sbjct: 257 EVTLSSVLASKRMTLRQLTGLKVGDVLPIELPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312

Query: 136 FGVRVIEI 143
             V++  +
Sbjct: 313 -AVKITAV 319


>gi|21241176|ref|NP_640758.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106483|gb|AAM35294.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 304

 Score = 34.1 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117
           +    +   +   +  + + +Q+ +    + +S L  L  G ++ L   V ++ + + + 
Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146
            Q I  G +  + E   H GV+++ +  +
Sbjct: 274 GQTIGIGRLVTVGE---HLGVQILSMSES 299


>gi|331232871|ref|XP_003329097.1| hypothetical protein PGTG_10837 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309308087|gb|EFP84678.1| hypothetical protein PGTG_10837 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 893

 Score = 34.1 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 12  KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71
           + +    S  +  PLQ + ++SP    +   Q    D +S PIS  S +       +   
Sbjct: 165 EPSRHSFSSELPAPLQLSPINSPQAQEDRQDQTRTFDPVSSPISRKSQSQGVIELGS-SP 223

Query: 72  IMNIPVKMQIILGSCCMQISN 92
           +++IP           M ISN
Sbjct: 224 LVDIPSSFT----KARMPISN 240


>gi|66768580|ref|YP_243342.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573912|gb|AAY49322.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 337

 Score = 34.1 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V +  +L S  M +  L  L  GD++ +D      +   +    +  GE  +   ++  
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312

Query: 136 FGVRVIEI 143
             V++  +
Sbjct: 313 -AVKITAV 319


>gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae 642]
          Length = 322

 Score = 34.1 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118
           +   +    + + +++++  GDVI ++  + +S+ +  N 
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE--LSDSLVLRANG 296


>gi|294625839|ref|ZP_06704455.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599867|gb|EFF43988.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 304

 Score = 34.1 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 59  NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117
           +    +   +   +  + + +Q+ +    + +S L  L  G ++ L   V ++ + + + 
Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273

Query: 118 NQKIAKGEITIMEEDDTHFGVRV 140
            Q I  G +  + E   H GV++
Sbjct: 274 GQTIGIGRLVTVGE---HLGVQI 293


>gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
 gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
          Length = 342

 Score = 34.1 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 57/130 (43%), Gaps = 12/130 (9%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D+   D +V+ P +  E + +  D         SD ++  E+      + I+++ V 
Sbjct: 223 IELDSGGGDLHVTMPYSMIEPIREMLDAG-----FQSDVSDQDERWVKALREDILDVNVP 277

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           +   +    +++ +++N+  GDVI ++    E + +  N     K     +     +  +
Sbjct: 278 LGATVVRRQLKLRDILNMQPGDVIPVEMP--EDMIMRANGMPAFK---VKLGAHKGNLAL 332

Query: 139 RVIE-ILNAQ 147
           +V+E ++  +
Sbjct: 333 QVLEPVVRPR 342


>gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105]
 gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105]
          Length = 348

 Score = 34.1 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDV--ITLDKRVGESVD 113
            V +   L S  + +++++ L  GDV  I +DK +   VD
Sbjct: 256 EVDLVASLASTQLTVADIMELRIGDVIPIEIDKVIEARVD 295


>gi|315498450|ref|YP_004087254.1| flagellar motor switch protein flim [Asticcacaulis excentricus CB
           48]
 gi|315416462|gb|ADU13103.1| flagellar motor switch protein FliM [Asticcacaulis excentricus CB
           48]
          Length = 387

 Score = 34.1 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI------TINNQKIAKG 124
           ++++ +L    M +S ++NL  G+ I L+      +++        N +   KG
Sbjct: 309 MEVRAVLDEQQMPLSEVLNLKVGETIVLNATADSPIELRCGTIPLTNGKMGRKG 362


>gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 252

 Score = 34.1 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 134 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 188

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    + + +++++  GDVI ++
Sbjct: 189 LTTTIAQRQLPLRDILHMRPGDVIPVE 215


>gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 322

 Score = 34.1 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    + + +++++  GDVI ++
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285


>gi|253998475|ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
 gi|313200550|ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688]
 gi|253985154|gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
 gi|312439866|gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688]
          Length = 334

 Score = 33.7 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
            V++   L    MQ+ +++N+  GDVI L+  + E+++  ++N  +
Sbjct: 256 EVELVANLAKARMQLGDVLNMKVGDVIPLN--ISETIEAHVDNVPV 299


>gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae B728a]
 gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 322

 Score = 33.7 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    + + +++++  GDVI ++
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285


>gi|147679239|ref|YP_001213454.1| putative aminopeptidase 1 [Pelotomaculum thermopropionicum SI]
 gi|146275336|dbj|BAF61085.1| aspartyl aminopeptidase [Pelotomaculum thermopropionicum SI]
          Length = 470

 Score = 33.7 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 75  IPVKMQIILGSCCMQISNLV-NLSKGDV--ITLDKRVGESVDITINNQKIAKGEI----- 126
           +PV +    G     IS+L+ +L+K  +     D   GE ++I      +A GE+     
Sbjct: 163 VPVVIGERPGEPVFTISDLLPHLAKDQMEKKMADAVSGEGLNILAGGMPVAGGEVKERFK 222

Query: 127 -TIMEEDDTHFGVRVIEILNAQ 147
             ++++ +  +G+   ++++A+
Sbjct: 223 LAVLDQLNRLYGITEEDLISAE 244


>gi|163731544|ref|ZP_02138991.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149]
 gi|161394998|gb|EDQ19320.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149]
          Length = 382

 Score = 33.7 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 48  DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
             + E  +S+  +    S    +  +M +  ++  +L    + +S +  L  GD +++  
Sbjct: 191 KAVPERHNSEGESAAPGSPATLEHSVMAVTAELSAVLCRVRVSLSEMSRLRPGDTLSIPS 250

Query: 107 RVGESVDIT-INNQKIAKG 124
              +SV++  I   +IA+G
Sbjct: 251 NAFDSVEVLSIEGARIARG 269


>gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato T1]
 gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato K40]
 gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato T1]
 gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 322

 Score = 33.7 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    + + +++++  GDVI ++
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285


>gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 322

 Score = 33.7 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    + + +++++  GDVI ++
Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285


>gi|260779321|ref|ZP_05888213.1| putative flagellar motor switch protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605485|gb|EEX31780.1| putative flagellar motor switch protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 271

 Score = 33.7 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
           PVK+ ++L    M +S L++L   DV+ ++      V I
Sbjct: 205 PVKLNVLLSKKTMPLSELISLQPNDVLPIELLSSAPVSI 243


>gi|296445666|ref|ZP_06887621.1| anti-FecI sigma factor, FecR [Methylosinus trichosporium OB3b]
 gi|296256911|gb|EFH03983.1| anti-FecI sigma factor, FecR [Methylosinus trichosporium OB3b]
          Length = 233

 Score = 33.7 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 89  QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
            + +L    +G +I +D+ +GE VDI        +G + I  +       RV  + +A+
Sbjct: 151 PVDDLTAWRRGRLIFVDRPLGEVVDILARYH---RGYVVIAGDALRRL--RVTGVFDAK 204


>gi|298346003|ref|YP_003718690.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           43063]
 gi|304390239|ref|ZP_07372193.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315654591|ref|ZP_07907497.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           51333]
 gi|315657504|ref|ZP_07910386.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236064|gb|ADI67196.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           43063]
 gi|304326721|gb|EFL93965.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491055|gb|EFU80674.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           51333]
 gi|315491976|gb|EFU81585.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 306

 Score = 33.7 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 2/106 (1%)

Query: 17  GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76
             ++     L D ++  P +     I + DV +            + +     D + ++P
Sbjct: 179 PITLTAGEHLDDCSIMMPVSMITDAIHQGDVHDTRTEQQKAEAAAVRQHL--VDTLEDVP 236

Query: 77  VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122
           + + +      +    L  L+ GD + L       +D+ + +  +A
Sbjct: 237 IGVAVRFTPRNVNPRELDGLAIGDTLPLIHPTSRPLDLVVGDLILA 282


>gi|121608105|ref|YP_995912.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
           EF01-2]
 gi|121552745|gb|ABM56894.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
           EF01-2]
          Length = 334

 Score = 33.7 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107
            V +   L      +  L+ L  GD I L+++
Sbjct: 257 EVVLVAELARADATVEQLLALKPGDFIELERQ 288


>gi|159024056|gb|ABW87284.1| HrcQ [Xanthomonas fuscans subsp. fuscans]
          Length = 304

 Score = 33.7 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 72  IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIME 130
           +  + + +Q+ +    + +S L  L  G ++ L   V ++ + + +  Q I  G +  + 
Sbjct: 227 VAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVYGQTIGIGRLVTVG 286

Query: 131 EDDTHFGVRV 140
           E   H GV++
Sbjct: 287 E---HLGVQI 293


>gi|288917908|ref|ZP_06412268.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288350697|gb|EFC84914.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1157

 Score = 33.7 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 13  DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72
           D L  R+     P    +V+S     E++ +   V   S+ ++S    ++ +      ++
Sbjct: 311 DTLADRTEST-RPETAGDVTSLVALPEIVGEILGVGPKSKAVASQVTTLVSRLGPELGIL 369

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109
            ++P+     +GS  + +  +  L +G+VI   ++ G
Sbjct: 370 SDVPLDAIAEVGSPTL-VEGIGRLRRGEVI---RQAG 402


>gi|58582231|ref|YP_201247.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624124|ref|YP_451496.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188576791|ref|YP_001913720.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576983|ref|YP_001913912.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58426825|gb|AAW75862.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368064|dbj|BAE69222.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521243|gb|ACD59188.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521435|gb|ACD59380.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 337

 Score = 33.7 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V +  +L S  M +  L  L  GD++ +D      +   +    +  GE  +   ++  
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312

Query: 136 FGVRVIEI 143
             V++  +
Sbjct: 313 -AVKITAV 319


>gi|167949200|ref|ZP_02536274.1| hypothetical protein Epers_22951 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 113

 Score = 33.7 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 20/88 (22%)

Query: 35  TNNSEMLIQKNDVDNISE-PISSDSNNILEKSTDNFDLIMNIPVKMQI----------IL 83
              +E L +++  +  +  P  + + +  +  T + D I+++PV +             +
Sbjct: 16  DEWAEALEEQSGSEGGANLPAVNGAEDEDDAETVSLDAILDVPVIISTGDRPHQDQHPQV 75

Query: 84  GSCCMQISNLVNLSKGDVITLDKRVGES 111
            S  +         +  V+ LD+  GE 
Sbjct: 76  CSSSI---------RDSVVELDRLAGEP 94


>gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 363

 Score = 33.7 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +++ P +  E + +  D    S+   +D    L  S    D IM++ V++
Sbjct: 205 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTD----LRWSKALRDEIMDVEVEL 260

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
              L    + +  ++ L  GD+I ++
Sbjct: 261 STQLLEVDLTLKQIMELKAGDIIPVE 286


>gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 337

 Score = 33.7 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V +  +L S  M +  L  L  GD++ +D      +   +    +  GE  +   ++  
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312

Query: 136 FGVRVIEI 143
             V++  +
Sbjct: 313 -AVKITAV 319


>gi|21231367|ref|NP_637284.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|188991610|ref|YP_001903620.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113030|gb|AAM41208.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|167733370|emb|CAP51571.1| Flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris]
          Length = 337

 Score = 33.7 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V +  +L S  M +  L  L  GD++ +D      +   +    +  GE  +   ++  
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312

Query: 136 FGVRVIEI 143
             V++  +
Sbjct: 313 -AVKITAV 319


>gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
           19865]
 gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
           19865]
          Length = 337

 Score = 33.7 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135
            V +  +L S  M +  L  L  GD++ +D      +   +    +  GE  +   ++  
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312

Query: 136 FGVRVIEI 143
             V++  +
Sbjct: 313 -AVKITAV 319


>gi|332360787|gb|EGJ38593.1| hypothetical protein HMPREF9380_1192 [Streptococcus sanguinis SK49]
          Length = 642

 Score = 33.7 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 11  IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67
            K  L   S     P Q    ++PT  ++  +        ++P  + S+   E +T 
Sbjct: 200 GKWVLVKDSADTTTPAQPEQPTTPTEPAQPEVPAPTPAEPAQPTPAPSDRPAEPTTP 256


>gi|124265765|ref|YP_001019769.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
 gi|124258540|gb|ABM93534.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
          Length = 333

 Score = 33.7 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 25/157 (15%)

Query: 7   KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE 63
           ++ Y +  ++ +   I  P +    T+ +    ++   I         EPI     + ++
Sbjct: 176 ELEYQRSEMQPQFATIAAPSEIVVTTSFTVEIGDTSGTIHFCIPYATLEPIRDTLYSTVQ 235

Query: 64  KSTDNFD------LIMNI---PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114
              +  D      L   I    V +   L      +  L+ L  GD I LD      +D 
Sbjct: 236 GDANEPDRRWVKLLTQQIQAAEVDLVAELAQAPATVEQLLALKPGDFIELD------LDQ 289

Query: 115 TINNQKIAKGEITIME----EDDTHFGVRVIEILNAQ 147
            ++ +      + + +      +  + +++ ++L  Q
Sbjct: 290 VVHAKVDG---VPVFDCHYGTSNGKYAIKIDQLLTNQ 323


>gi|320354329|ref|YP_004195668.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122831|gb|ADW18377.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
           propionicus DSM 2032]
          Length = 345

 Score = 33.7 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 73  MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121
           + +  ++    G   M I  ++ L  GD+I L       + + + +Q +
Sbjct: 266 LEMESQVIARSGLITMTIRRILGLQPGDIIDLQYDPDRPLTVLVEDQPL 314


>gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1]
 gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
          Length = 322

 Score = 33.7 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 10  YIKDNLEGRSMHIDNPLQDTNVSS---PTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66
           YI   +     +I  P +   VS+     +     +      ++ EP+    +   +   
Sbjct: 178 YINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDL 237

Query: 67  DNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117
           D+ D          ++++ V +   +    +++ +++++  GDVI ++    E + +  N
Sbjct: 238 DDQDERWVNALRQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEMP--EDMIMRAN 295

Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147
                K     M     +  ++VIE +  +
Sbjct: 296 GVPAFK---VKMGSHKGNLALQVIEPIERR 322


>gi|330940699|gb|EGH43710.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 222

 Score = 33.7 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 104 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 158

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    + + +++++  GDVI ++
Sbjct: 159 LTTTIAQRQLPLRDILHMRPGDVIPVE 185


>gi|325109075|ref|YP_004270143.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
           5305]
 gi|324969343|gb|ADY60121.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
           5305]
          Length = 368

 Score = 33.7 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 42  IQKNDVDNISEPISSDS------NNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLV 94
           I  N ++ ++  +SSD+        I  +     ++ I    V +   L    +  S L+
Sbjct: 225 IPFNTIEPLTGKLSSDTWSAYTKQQISPQQKAQLEVGIGAAKVNLVAALAETHLTASELM 284

Query: 95  NLSKGDVITLDKRVGESVDITINNQK 120
           NL  GDVI  ++ V + + I +  + 
Sbjct: 285 NLDVGDVILTERDVKKGLTIFVEGKP 310


>gi|330899437|gb|EGH30856.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 216

 Score = 33.7 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78
           + +D    D +V+ P +  E + +  D         SD ++  E+  +   + ++++ V 
Sbjct: 98  IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 152

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLD 105
           +   +    + + +++++  GDVI ++
Sbjct: 153 LTTTIAQRQLPLRDILHMRPGDVIPVE 179


>gi|187918152|ref|YP_001883715.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
 gi|119861000|gb|AAX16795.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
          Length = 352

 Score = 33.7 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 54  ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113
            +S++ ++L +  +N D+++         +G   +++  +++L KGDVI L+      +D
Sbjct: 253 TTSENLDVLREKLENTDMLL------VAEIGEVKLKVREILSLEKGDVINLE---DSPID 303


>gi|88813208|ref|ZP_01128448.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
 gi|88789530|gb|EAR20657.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
          Length = 336

 Score = 33.7 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 48  DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106
           D +S  + SD N++ ++   +  + + + PV++   L    + +  L+ L  GD+I ++ 
Sbjct: 229 DVLSAGVQSDRNDVDQRWVRSLREEMKSAPVRLSCRLTEARVSLHELMRLQPGDIIPIEM 288

Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142
              E+V +      + +G +        +  V++ E
Sbjct: 289 P--ETVVLRAAEVPVLRGRL---GCSGGNVAVKITE 319


>gi|330814983|ref|YP_004358688.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
 gi|327367376|gb|AEA58732.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
          Length = 332

 Score = 33.7 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 76  PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGEITIMEED 132
            V++   L         ++NL  GDV+ LD  +G++V   ++   +     G        
Sbjct: 257 EVELTADLAEVPTTFERILNLRVGDVLPLD--IGDAVTAKVDGVPVMECGYG------IF 308

Query: 133 DTHFGVRVIEILNA 146
           +  + +RV  ++ A
Sbjct: 309 NGQYALRVNRMIGA 322


>gi|94500287|ref|ZP_01306820.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
 gi|94427586|gb|EAT12563.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
          Length = 331

 Score = 33.7 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 75  IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134
           +PV   ++     + +  +     GDVI +D    E   +  N   I +G++ +    D 
Sbjct: 255 VPVHGTVV--DREISLREVAAFQPGDVIPVDMP--EDFILQANGTPIFRGQLGV---RDD 307

Query: 135 HFGVRVIEILNAQ 147
           +  V++ E +  +
Sbjct: 308 NLAVKIKEPIKRK 320


>gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
           3776]
 gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
           3776]
          Length = 375

 Score = 33.7 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 42  IQKNDVDNISEPISSDSNNILEKSTDNF-------DLIMNIPVKMQIILGSCCMQISNLV 94
           I  N ++ +S  +SSD+ +  +K   +        D +    VKM + L    +   +L 
Sbjct: 231 IPFNTIEPLSGKLSSDTWSAYQKKGLDPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLA 290

Query: 95  NLSKGDVITLDKRVGESVDITINN 118
           +L+ GDVI  +    + +++ +  
Sbjct: 291 HLAVGDVIMTEHPKEDGLEVVVEG 314


>gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 363

 Score = 33.7 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 20  MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79
           + +D    D +++ P +  E + +  D    S+   +D    L  S    D IM++ V M
Sbjct: 205 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTD----LRWSKALRDEIMDVEVDM 260

Query: 80  QIILGSCCMQISNLVNLSKGDVITLD 105
              L    + +  ++ L  GD+I ++
Sbjct: 261 STQLLEVDLTLKQIMELKAGDIIPVE 286


>gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
 gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
          Length = 395

 Score = 33.7 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138
           M   LG   + I +L +L  GDVI L+K    +V + +  Q    G++ + ++   +  +
Sbjct: 280 MTGQLGVVKLDIEDLYHLKVGDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKK---NIAI 336

Query: 139 RVIE 142
           R+ +
Sbjct: 337 RIED 340


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.154    0.419 

Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,695,985,257
Number of Sequences: 14124377
Number of extensions: 128163221
Number of successful extensions: 302143
Number of sequences better than 10.0: 2295
Number of HSP's better than 10.0 without gapping: 3225
Number of HSP's successfully gapped in prelim test: 521
Number of HSP's that attempted gapping in prelim test: 297247
Number of HSP's gapped (non-prelim): 4331
length of query: 147
length of database: 4,842,793,630
effective HSP length: 110
effective length of query: 37
effective length of database: 3,289,112,160
effective search space: 121697149920
effective search space used: 121697149920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 76 (33.7 bits)