BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62] (147 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040365|gb|ACT57161.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62] Length = 147 Score = 290 bits (742), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 147/147 (100%), Positives = 147/147 (100%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN Sbjct: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60 Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK Sbjct: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 IAKGEITIMEEDDTHFGVRVIEILNAQ Sbjct: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 >gi|315121855|ref|YP_004062344.1| putative flagellar motor switch protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495257|gb|ADR51856.1| putative flagellar motor switch protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 136 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/136 (73%), Positives = 114/136 (83%), Gaps = 8/136 (5%) Query: 20 MHIDNPLQDTNVSSPT---NNSEMLIQ-----KNDVDNISEPISSDSNNILEKSTDNFDL 71 MHID+PLQD + S NNS + +ND+D+ SE ISS+SNNI EKS+DN DL Sbjct: 1 MHIDSPLQDHDQSEECTLKNNSHIFQNTTENPQNDLDDSSEKISSNSNNIFEKSSDNIDL 60 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 IMNIPV +QIILGSCCMQISNLVNLSKGDVITLDKRVGE+VDITINNQKIAKGEITIME+ Sbjct: 61 IMNIPVNIQIILGSCCMQISNLVNLSKGDVITLDKRVGEAVDITINNQKIAKGEITIMED 120 Query: 132 DDTHFGVRVIEILNAQ 147 DDTHFGVRVIE+LN++ Sbjct: 121 DDTHFGVRVIELLNSK 136 >gi|222084856|ref|YP_002543385.1| flagellar motor switch protein [Agrobacterium radiobacter K84] gi|221722304|gb|ACM25460.1| flagellar motor switch protein [Agrobacterium radiobacter K84] Length = 179 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 44/78 (56%), Positives = 64/78 (82%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLIM+IP+ +QI+LGS MQ+S L+NL++G +I LDKR+GE V+IT+N + I +GEIT Sbjct: 98 NLDLIMDIPIDVQIVLGSSRMQVSGLMNLTEGAIIALDKRIGEPVEITVNGRCIGRGEIT 157 Query: 128 IMEEDDTHFGVRVIEILN 145 ++E DDT FG+++IE+ N Sbjct: 158 VLEHDDTRFGIKLIELSN 175 >gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 195 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 43/80 (53%), Positives = 67/80 (83%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NFDLIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT Sbjct: 114 NFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 173 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++ DDT FGV++IE+L+ + Sbjct: 174 VLDNDDTRFGVKLIEVLSTK 193 >gi|241203097|ref|YP_002974193.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856987|gb|ACS54654.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 194 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 43/80 (53%), Positives = 67/80 (83%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NFDLIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT Sbjct: 113 NFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 172 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++ DDT FGV++IE+L+ + Sbjct: 173 VLDNDDTRFGVKLIEVLSTK 192 >gi|86356303|ref|YP_468195.1| flagellar motor switch protein [Rhizobium etli CFN 42] gi|86280405|gb|ABC89468.1| flagellar motor switch protein [Rhizobium etli CFN 42] Length = 214 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 43/82 (52%), Positives = 69/82 (84%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T NF+LIM+IP+ +QI+LG+ MQ+S+L+NL++G I LDK++GE V+I +N ++IA+GE Sbjct: 131 TSNFELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGEPVEIMVNGRRIARGE 190 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 IT+++ DDT FGV++IE+L+ + Sbjct: 191 ITVLDNDDTRFGVKLIEVLSTK 212 >gi|218508216|ref|ZP_03506094.1| flagellar motor switch protein [Rhizobium etli Brasil 5] Length = 195 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 43/82 (52%), Positives = 68/82 (82%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GE Sbjct: 112 TSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGE 171 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 IT+++ DDT FGV++IE+L+ + Sbjct: 172 ITVLDNDDTRFGVKLIEVLSTK 193 >gi|190890354|ref|YP_001976896.1| flagellar motor switch protein [Rhizobium etli CIAT 652] gi|190695633|gb|ACE89718.1| flagellar motor switch protein [Rhizobium etli CIAT 652] Length = 195 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 43/82 (52%), Positives = 68/82 (82%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GE Sbjct: 112 TSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGE 171 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 IT+++ DDT FGV++IE+L+ + Sbjct: 172 ITVLDNDDTRFGVKLIEVLSTK 193 >gi|222147562|ref|YP_002548519.1| flagellar motor switch protein FliN [Agrobacterium vitis S4] gi|221734550|gb|ACM35513.1| flagellar motor switch protein FliN [Agrobacterium vitis S4] Length = 220 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 42/80 (52%), Positives = 65/80 (81%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLIM+IP+ +QI+LGS M +S L+NL +G +I LDK++GE V+I +N ++IA+GEIT Sbjct: 139 NLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEIMVNGRRIARGEIT 198 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E DDT FGV++IE+++ + Sbjct: 199 VLENDDTRFGVKLIEVMSTK 218 >gi|209547919|ref|YP_002279836.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533675|gb|ACI53610.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 195 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 42/80 (52%), Positives = 67/80 (83%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT Sbjct: 114 NFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 173 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++ DDT FGV++IE+L+ + Sbjct: 174 VLDNDDTRFGVKLIEVLSTK 193 >gi|218679322|ref|ZP_03527219.1| putative flagellar motor switch protein [Rhizobium etli CIAT 894] Length = 178 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 42/80 (52%), Positives = 67/80 (83%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT Sbjct: 97 NFELIMDIPIDVQIMLGTNRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 156 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++ DDT FGV++IE+L+ + Sbjct: 157 VLDNDDTRFGVKLIEVLSTK 176 >gi|325291949|ref|YP_004277813.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3] gi|45479284|gb|AAS66686.1| FliN [Agrobacterium sp. H13-3] gi|325059802|gb|ADY63493.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3] Length = 179 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 40/82 (48%), Positives = 67/82 (81%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +DN DLIM+IP+ +QI+LG+ M +S L++L +G I LD+++GE V+I +N ++IA+GE Sbjct: 96 SDNMDLIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGE 155 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 IT++E+DDT FGV++IE+++ + Sbjct: 156 ITVLEDDDTRFGVKLIEVMSTR 177 >gi|159184368|ref|NP_353589.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str. C58] gi|3913685|sp|Q57259|FLIN_AGRT5 RecName: Full=Flagellar motor switch protein FliN gi|39092|emb|CAA46543.1| FliN homologue [Agrobacterium tumefaciens] gi|1480839|gb|AAC45323.1| FliN [Agrobacterium tumefaciens] gi|2459704|gb|AAB71780.1| FliN [Agrobacterium tumefaciens] gi|159139682|gb|AAK86374.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str. C58] Length = 179 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 38/82 (46%), Positives = 67/82 (81%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 ++N ++IM+IP+ +QI+LG+ M +S L++L +G I LD+++GE V+I +N ++IA+GE Sbjct: 96 SENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGE 155 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 IT++E+DDT FGV++IE+L+ + Sbjct: 156 ITVLEDDDTRFGVKLIEVLSTR 177 >gi|319781691|ref|YP_004141167.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167579|gb|ADV11117.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 128 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 41/80 (51%), Positives = 61/80 (76%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S+ N +IMNIPV +QIILGS M +S+L+ L KG + L++R+GE VD+ +N +KIA+G Sbjct: 43 SSANSSVIMNIPVDIQIILGSTEMPVSDLMALQKGSTVALNRRIGEPVDVVVNGRKIARG 102 Query: 125 EITIMEEDDTHFGVRVIEIL 144 EIT++E D + FG+R+ EI+ Sbjct: 103 EITVLESDPSRFGIRLTEII 122 >gi|163758005|ref|ZP_02165093.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43] gi|162284294|gb|EDQ34577.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43] Length = 241 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 40/77 (51%), Positives = 59/77 (76%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 DL+M IPV +QIILGS M +S+L+ LS+G I LD+++GE V+I +N + I +GEIT++ Sbjct: 159 DLVMGIPVDVQIILGSSRMAVSSLMELSEGATIALDRKIGEPVEIMVNGKMIGRGEITVL 218 Query: 130 EEDDTHFGVRVIEILNA 146 + DDT F VR+IE++ A Sbjct: 219 DSDDTKFAVRIIEVIGA 235 >gi|254473327|ref|ZP_05086724.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062] gi|211957443|gb|EEA92646.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062] Length = 138 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 59/80 (73%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D ++ IPV MQ++LGS M +++L+ L +G VI LD RVGE VDI +N + +A+GEI Sbjct: 55 NLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVARGEIV 114 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E+D++ FGV + EI+ A+ Sbjct: 115 VVEDDNSRFGVSLTEIVGAK 134 >gi|150395475|ref|YP_001325942.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419] gi|150026990|gb|ABR59107.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419] Length = 215 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 39/76 (51%), Positives = 61/76 (80%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLIM+IP+ +QI+LG+ MQ+S+L+NL++G I LD+++GE V+I +N + I +GEIT Sbjct: 135 NLDLIMDIPIDIQIVLGTSRMQVSSLMNLTEGATIALDRKIGEPVEIMVNGRVIGRGEIT 194 Query: 128 IMEEDDTHFGVRVIEI 143 ++E D T FGV+++EI Sbjct: 195 VLEGDVTRFGVKLLEI 210 >gi|260466629|ref|ZP_05812817.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum WSM2075] gi|259029635|gb|EEW30923.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum WSM2075] Length = 128 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 40/77 (51%), Positives = 59/77 (76%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +IMNIPV +QIILGS M +S+L+ L KG + L++R+GE VD+ +N +KIA+GEIT Sbjct: 46 NSSVIMNIPVDVQIILGSTEMAVSDLMALQKGSTVALNRRIGEPVDVVVNGRKIARGEIT 105 Query: 128 IMEEDDTHFGVRVIEIL 144 ++E D + FG+R+ EI+ Sbjct: 106 VLESDPSRFGIRLTEII 122 >gi|319409197|emb|CBI82841.1| Flagellar motor switch protein fliY [Bartonella schoenbuchensis R1] Length = 165 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 37/78 (47%), Positives = 62/78 (79%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +LIM+IPV++QI+LGS M ++NL++L +G VITLDK++G+ +DI +N + IA+GE+ Sbjct: 87 NPELIMSIPVEVQIVLGSTTMPVANLMDLGRGSVITLDKQIGDPIDIIVNGRIIARGEVI 146 Query: 128 IMEEDDTHFGVRVIEILN 145 ++E+D + FGV + E++ Sbjct: 147 VLEDDPSRFGVSLTEVMG 164 >gi|319405390|emb|CBI79009.1| Flagellar motor switch protein fliY [Bartonella sp. AR 15-3] Length = 170 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 40/94 (42%), Positives = 70/94 (74%), Gaps = 3/94 (3%) Query: 55 SSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 SS ++ + + + D N +LIM+IPV++Q++LGS M +S L++L +G VITLDK++G+ Sbjct: 76 SSGASKVPQNAGDTSSNTELIMSIPVEVQVVLGSTTMPVSTLMDLGRGAVITLDKQIGDP 135 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +DI +N + IA+GE+ ++E+D + FGV + EI++ Sbjct: 136 IDIVVNGRVIARGEVIVLEDDPSRFGVSLTEIID 169 >gi|13472566|ref|NP_104133.1| flagellar motor switch protein FliN [Mesorhizobium loti MAFF303099] gi|14023312|dbj|BAB49919.1| flagellar motor switch protein; FliN [Mesorhizobium loti MAFF303099] Length = 128 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 60/77 (77%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N ++IMNIPV +QIILGS M +++L+ L KG + L++R+GE VD+ +N +KIA+GEIT Sbjct: 46 NSNVIMNIPVDVQIILGSTEMAVADLMALQKGSTVALNRRIGEPVDVVVNGRKIARGEIT 105 Query: 128 IMEEDDTHFGVRVIEIL 144 ++E D + FG+R+ EI+ Sbjct: 106 VLESDPSRFGIRLTEII 122 >gi|118589948|ref|ZP_01547352.1| probable flagellar motor switch protein [Stappia aggregata IAM 12614] gi|118437445|gb|EAV44082.1| probable flagellar motor switch protein [Stappia aggregata IAM 12614] Length = 130 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 39/80 (48%), Positives = 60/80 (75%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D I+ IPV +Q++LGS M +SNL+ L +G VI L+ RVGE +DI +N + IA+GE+ Sbjct: 45 NLDTILGIPVNIQVVLGSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVV 104 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E+D++ FGV + EI++AQ Sbjct: 105 VVEDDNSRFGVSLTEIISAQ 124 >gi|2916786|emb|CAA11953.1| flagellar C-ring protein [Sinorhizobium meliloti] Length = 198 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 39/78 (50%), Positives = 60/78 (76%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N + I +GE Sbjct: 116 TANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGE 175 Query: 126 ITIMEEDDTHFGVRVIEI 143 IT++E D T FGV+++EI Sbjct: 176 ITVLEGDVTRFGVKLLEI 193 >gi|227820848|ref|YP_002824818.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii NGR234] gi|227339847|gb|ACP24065.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii NGR234] Length = 210 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 39/76 (51%), Positives = 59/76 (77%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N + I +GEIT Sbjct: 130 NMDLIMDIPIDVQIVLGTSRMQVSGLMGLTEGATIALDRKIGEPVEIMVNGRVIGRGEIT 189 Query: 128 IMEEDDTHFGVRVIEI 143 ++E D T FGV++IEI Sbjct: 190 VLEGDVTRFGVKLIEI 205 >gi|15964405|ref|NP_384758.1| flagellar motor switch protein [Sinorhizobium meliloti 1021] gi|15073582|emb|CAC45224.1| Flagellar motor switch protein [Sinorhizobium meliloti 1021] Length = 210 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 39/78 (50%), Positives = 60/78 (76%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N + I +GE Sbjct: 128 TANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGE 187 Query: 126 ITIMEEDDTHFGVRVIEI 143 IT++E D T FGV+++EI Sbjct: 188 ITVLEGDVTRFGVKLLEI 205 >gi|307311547|ref|ZP_07591188.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C] gi|307318902|ref|ZP_07598333.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83] gi|17380371|sp|O54245|FLIN_RHIME RecName: Full=Flagellar motor switch protein FliN gi|306895316|gb|EFN26071.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83] gi|306899564|gb|EFN30193.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C] Length = 198 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 39/78 (50%), Positives = 60/78 (76%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N + I +GE Sbjct: 116 TANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGE 175 Query: 126 ITIMEEDDTHFGVRVIEI 143 IT++E D T FGV+++EI Sbjct: 176 ITVLEGDVTRFGVKLLEI 193 >gi|254503358|ref|ZP_05115509.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] gi|222439429|gb|EEE46108.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] Length = 130 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 2/108 (1%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 I+ D N + + D N + D N D I+ IPV +Q++LGS M +SNL+ L +G Sbjct: 17 IKTADAANFARVEAPDKKNAGDTMGDDRNLDTILGIPVNIQVVLGSATMLVSNLLKLGRG 76 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VI L+ RVGE +DI +N + IA+GE+ ++E+D++ FGV + EI+++Q Sbjct: 77 AVIPLNHRVGEPIDIVVNGRVIARGEVVVVEDDNSRFGVSLTEIISSQ 124 >gi|170748132|ref|YP_001754392.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] gi|170654654|gb|ACB23709.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] Length = 130 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 38/81 (46%), Positives = 58/81 (71%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N D I+ IPV MQ++LGS M +SNL+ L +G ++ LD RVGE VD+ +N + IA+G Sbjct: 42 SGRNLDSILRIPVLMQVVLGSATMPVSNLMKLGRGAIVPLDHRVGEPVDVVVNGRVIARG 101 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D++ FGV + EI+ Sbjct: 102 EVVVVEDDNSRFGVSLTEIVG 122 >gi|121602197|ref|YP_989410.1| flagellar motor switch protein fliY [Bartonella bacilliformis KC583] gi|120614374|gb|ABM44975.1| flagellar motor switch protein fliY [Bartonella bacilliformis KC583] Length = 139 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 66/81 (81%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +++N +L+M+IPV++QI+LGS M ++NL+NL +G VITL+K++G+ +DI +N + IA+G Sbjct: 58 ASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDIVVNGRIIARG 117 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + E+++ Sbjct: 118 EVIVLEDDSSRFGVSLTEVID 138 >gi|17989457|ref|NP_542090.1| flagellar motor switch protein FLIN [Brucella melitensis bv. 1 str. 16M] gi|62317076|ref|YP_222929.1| flagellar motor switch protein FliN [Brucella abortus bv. 1 str. 9-941] gi|83269069|ref|YP_418360.1| flagellar motor switch FliN [Brucella melitensis biovar Abortus 2308] gi|161620209|ref|YP_001594095.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365] gi|225685984|ref|YP_002733956.1| flagellar motor switch protein FliN [Brucella melitensis ATCC 23457] gi|254731810|ref|ZP_05190388.1| Flagellar motor switch FliN protein [Brucella abortus bv. 4 str. 292] gi|256014913|ref|YP_003104922.1| flagellar motor switch protein FliN [Brucella microti CCM 4915] gi|17985336|gb|AAL54354.1| flagellar motor switch protein flin [Brucella melitensis bv. 1 str. 16M] gi|62197269|gb|AAX75568.1| flagellar motor switch protein FliN, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939343|emb|CAJ12288.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Brucella melitensis biovar Abortus 2308] gi|161337020|gb|ABX63324.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365] gi|225642089|gb|ACO02002.1| flagellar motor switch protein FliN [Brucella melitensis ATCC 23457] gi|255997573|gb|ACU49260.1| flagellar motor switch protein FliN [Brucella microti CCM 4915] Length = 106 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 59/81 (72%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G Sbjct: 25 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 84 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + EI+ Sbjct: 85 EVIVLEDDSSRFGVSLTEIIG 105 >gi|218663132|ref|ZP_03519062.1| putative flagellar motor switch protein [Rhizobium etli IE4771] Length = 77 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 38/75 (50%), Positives = 62/75 (82%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 M+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ D Sbjct: 1 MDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDND 60 Query: 133 DTHFGVRVIEILNAQ 147 DT FGV++IE+L+ + Sbjct: 61 DTRFGVKLIEVLSTK 75 >gi|189022343|ref|YP_001932084.1| Flagellar motor switch FliN protein [Brucella abortus S19] gi|225628599|ref|ZP_03786633.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo] gi|237816638|ref|ZP_04595630.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A] gi|254691435|ref|ZP_05154689.1| Flagellar motor switch FliN protein [Brucella abortus bv. 6 str. 870] gi|254695266|ref|ZP_05157094.1| Flagellar motor switch FliN protein [Brucella abortus bv. 3 str. Tulya] gi|254698365|ref|ZP_05160193.1| Flagellar motor switch FliN protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699434|ref|ZP_05161262.1| Flagellar motor switch FliN protein [Brucella suis bv. 5 str. 513] gi|254706319|ref|ZP_05168147.1| Flagellar motor switch FliN protein [Brucella pinnipedialis M163/99/10] gi|254711389|ref|ZP_05173200.1| Flagellar motor switch FliN protein [Brucella pinnipedialis B2/94] gi|254711988|ref|ZP_05173799.1| Flagellar motor switch FliN protein [Brucella ceti M644/93/1] gi|254715058|ref|ZP_05176869.1| Flagellar motor switch FliN protein [Brucella ceti M13/05/1] gi|254720634|ref|ZP_05182445.1| Flagellar motor switch FliN protein [Brucella sp. 83/13] gi|256029981|ref|ZP_05443595.1| Flagellar motor switch FliN protein [Brucella pinnipedialis M292/94/1] gi|256043046|ref|ZP_05445991.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 1 str. Rev.1] gi|256111968|ref|ZP_05452919.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 3 str. Ether] gi|256256621|ref|ZP_05462157.1| Flagellar motor switch FliN protein [Brucella abortus bv. 9 str. C68] gi|256262890|ref|ZP_05465422.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str. 63/9] gi|260544316|ref|ZP_05820137.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038] gi|260564278|ref|ZP_05834763.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str. 16M] gi|260568541|ref|ZP_05839010.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40] gi|260757054|ref|ZP_05869402.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str. 870] gi|260759575|ref|ZP_05871923.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str. 292] gi|260762819|ref|ZP_05875151.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str. 86/8/59] gi|260882864|ref|ZP_05894478.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str. C68] gi|261215631|ref|ZP_05929912.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str. Tulya] gi|261216765|ref|ZP_05931046.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1] gi|261313766|ref|ZP_05952963.1| flagellar motor switch protein FliN [Brucella pinnipedialis M163/99/10] gi|261318995|ref|ZP_05958192.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94] gi|261319632|ref|ZP_05958829.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1] gi|261749885|ref|ZP_05993594.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513] gi|265985678|ref|ZP_06098413.1| flagellar motor switch protein FliN [Brucella sp. 83/13] gi|265987002|ref|ZP_06099559.1| flagellar motor switch protein FliN [Brucella pinnipedialis M292/94/1] gi|265989484|ref|ZP_06102041.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str. Rev.1] gi|265993417|ref|ZP_06105974.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str. Ether] gi|294853147|ref|ZP_06793819.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL 07-0026] gi|297249978|ref|ZP_06933679.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5 str. B3196] gi|306837358|ref|ZP_07470237.1| flagellar motor switch protein FliN [Brucella sp. NF 2653] gi|306841072|ref|ZP_07473795.1| flagellar motor switch protein FliN [Brucella sp. BO2] gi|306846303|ref|ZP_07478864.1| flagellar motor switch protein FliN [Brucella sp. BO1] gi|189020917|gb|ACD73638.1| Flagellar motor switch FliN protein [Brucella abortus S19] gi|225616445|gb|EEH13493.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo] gi|237787451|gb|EEP61667.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A] gi|260097587|gb|EEW81461.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038] gi|260151921|gb|EEW87014.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str. 16M] gi|260155206|gb|EEW90287.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40] gi|260669893|gb|EEX56833.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str. 292] gi|260673240|gb|EEX60061.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str. 86/8/59] gi|260677162|gb|EEX63983.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str. 870] gi|260872392|gb|EEX79461.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str. C68] gi|260917238|gb|EEX84099.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str. Tulya] gi|260921854|gb|EEX88422.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1] gi|261292322|gb|EEX95818.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1] gi|261298218|gb|EEY01715.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94] gi|261302792|gb|EEY06289.1| flagellar motor switch protein FliN [Brucella pinnipedialis M163/99/10] gi|261739638|gb|EEY27564.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513] gi|262764287|gb|EEZ10319.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str. Ether] gi|263000153|gb|EEZ12843.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str. Rev.1] gi|263092727|gb|EEZ16936.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str. 63/9] gi|264659199|gb|EEZ29460.1| flagellar motor switch protein FliN [Brucella pinnipedialis M292/94/1] gi|264664270|gb|EEZ34531.1| flagellar motor switch protein FliN [Brucella sp. 83/13] gi|294818802|gb|EFG35802.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL 07-0026] gi|297173847|gb|EFH33211.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5 str. B3196] gi|306273298|gb|EFM55167.1| flagellar motor switch protein FliN [Brucella sp. BO1] gi|306288910|gb|EFM60213.1| flagellar motor switch protein FliN [Brucella sp. BO2] gi|306407550|gb|EFM63750.1| flagellar motor switch protein FliN [Brucella sp. NF 2653] gi|326410310|gb|ADZ67374.1| Flagellar motor switch FliN protein [Brucella melitensis M28] gi|326553603|gb|ADZ88242.1| Flagellar motor switch FliN protein [Brucella melitensis M5-90] Length = 115 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 59/81 (72%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G Sbjct: 34 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + EI+ Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114 >gi|319406966|emb|CBI80603.1| Flagellar motor switch protein fliY [Bartonella sp. 1-1C] Length = 170 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 78/117 (66%), Gaps = 4/117 (3%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 TN S+P+ +E K + +S++ ++ N +LIM+IPV++Q++LGS M Sbjct: 57 TNPSTPSFGAEAA-GKTTIGGTG---ASNAPKNPSDTSSNTELIMSIPVEVQVVLGSTTM 112 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 ++ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FGV + EI++ Sbjct: 113 PVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGVSLTEIID 169 >gi|148558477|ref|YP_001257190.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC 25840] gi|148369762|gb|ABQ62634.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC 25840] Length = 115 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 59/81 (72%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G Sbjct: 34 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + EI+ Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114 >gi|27381990|ref|NP_773519.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] gi|27355160|dbj|BAC52144.1| fliN [Bradyrhizobium japonicum USDA 110] Length = 124 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 36/78 (46%), Positives = 57/78 (73%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D I+ IPV MQ++LGS + ++NL+ L +G V+ LD RVGE VD+ +N + +A+GE+ Sbjct: 40 NVDAILRIPVTMQVVLGSATIPVANLMKLGRGAVVPLDHRVGEPVDVVVNGRIVARGEVV 99 Query: 128 IMEEDDTHFGVRVIEILN 145 ++EED++ FGV + EI+ Sbjct: 100 VVEEDNSRFGVSLTEIVG 117 >gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp. indica ATCC 9039] gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp. indica ATCC 9039] Length = 109 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 39/78 (50%), Positives = 57/78 (73%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D I+ IPV +Q++LGS M +SNL+ L +G VI LD RVGE VDI +N + IA+GE+ Sbjct: 26 NLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVIPLDHRVGEPVDIVVNGRVIARGEVV 85 Query: 128 IMEEDDTHFGVRVIEILN 145 ++E+D++ FGV + EI+ Sbjct: 86 VVEDDNSRFGVSLTEIVG 103 >gi|188579886|ref|YP_001923331.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] gi|179343384|gb|ACB78796.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] Length = 108 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 38/78 (48%), Positives = 57/78 (73%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D I+ IPV MQ++LGS M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI Sbjct: 23 NLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIV 82 Query: 128 IMEEDDTHFGVRVIEILN 145 I+EED++ FGV + E++ Sbjct: 83 IVEEDNSRFGVSLTEVVG 100 >gi|319403949|emb|CBI77537.1| Flagellar motor switch protein fliY [Bartonella rochalimae ATCC BAA-1498] Length = 170 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 64/81 (79%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ N +LIM+IPV++Q++LGS M ++ L++L +G VITLDK++G+ +DI +N + IA+G Sbjct: 89 TSSNTELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARG 148 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + EI++ Sbjct: 149 EVIVLEDDPSRFGVSLTEIID 169 >gi|256158145|ref|ZP_05456061.1| Flagellar motor switch FliN protein [Brucella ceti M490/95/1] gi|256252904|ref|ZP_05458440.1| Flagellar motor switch FliN protein [Brucella ceti B1/94] gi|261219992|ref|ZP_05934273.1| flagellar motor switch protein FliN [Brucella ceti B1/94] gi|265996663|ref|ZP_06109220.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1] gi|260918576|gb|EEX85229.1| flagellar motor switch protein FliN [Brucella ceti B1/94] gi|262550960|gb|EEZ07121.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1] Length = 98 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 59/81 (72%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G Sbjct: 17 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 76 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + EI+ Sbjct: 77 EVIVLEDDSSRFGVSLTEIIG 97 >gi|256059634|ref|ZP_05449831.1| Flagellar motor switch FliN protein [Brucella neotomae 5K33] gi|261323604|ref|ZP_05962801.1| flagellar motor switch protein FliN [Brucella neotomae 5K33] gi|261299584|gb|EEY03081.1| flagellar motor switch protein FliN [Brucella neotomae 5K33] Length = 115 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 59/81 (72%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G Sbjct: 34 SKPNLDLIMGIPVDVQMVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + EI+ Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114 >gi|239834453|ref|ZP_04682781.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG 3301] gi|239822516|gb|EEQ94085.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG 3301] Length = 115 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 38/81 (46%), Positives = 59/81 (72%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N +LIM IPV +Q++LG M ++NL+ L +G VITLDK++G+ VDI +N + IA+G Sbjct: 34 SKPNLELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + EI+ Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114 >gi|163850081|ref|YP_001638124.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218528684|ref|YP_002419500.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240137214|ref|YP_002961683.1| flagellar motor switch protein fliN [Methylobacterium extorquens AM1] gi|254559226|ref|YP_003066321.1| flagellar motor switch protein fliN [Methylobacterium extorquens DM4] gi|163661686|gb|ABY29053.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218520987|gb|ACK81572.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240007180|gb|ACS38406.1| flagellar motor switch protein fliN [Methylobacterium extorquens AM1] gi|254266504|emb|CAX22268.1| flagellar motor switch protein fliN [Methylobacterium extorquens DM4] Length = 108 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 38/78 (48%), Positives = 57/78 (73%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D I+ IPV MQ++LGS M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI Sbjct: 23 NLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIV 82 Query: 128 IMEEDDTHFGVRVIEILN 145 I+EED++ FGV + E++ Sbjct: 83 IVEEDNSRFGVSLTEVVG 100 >gi|153011535|ref|YP_001372749.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC 49188] gi|151563423|gb|ABS16920.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC 49188] Length = 115 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 38/81 (46%), Positives = 59/81 (72%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N +LIM IPV +Q++LG M ++NL+ L +G VITLDK++G+ VDI +N + IA+G Sbjct: 34 SKPNLELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + EI+ Sbjct: 94 EVIVLEDDSSRFGVSLTEIIG 114 >gi|170741400|ref|YP_001770055.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] gi|168195674|gb|ACA17621.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] Length = 125 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 36/78 (46%), Positives = 57/78 (73%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D ++ IPV +Q++LGS M ++NL+ L +G ++ LD RVGE VDI +N + IA+GE+ Sbjct: 41 NLDSVLRIPVLIQVVLGSATMPVANLMKLGRGAIVPLDHRVGEPVDIMVNGRVIARGEVV 100 Query: 128 IMEEDDTHFGVRVIEILN 145 ++EED++ FGV + EI+ Sbjct: 101 VVEEDNSRFGVSLTEIVG 118 >gi|319898626|ref|YP_004158719.1| flagellar motor switch protein fliY [Bartonella clarridgeiae 73] gi|319402590|emb|CBI76135.1| Flagellar motor switch protein fliY [Bartonella clarridgeiae 73] Length = 171 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 69/91 (75%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + +++N ++ N +LIM+IPV++Q++LGS M ++ L++L +G VITLDK++G+ +DI Sbjct: 80 AQNASNSTGDTSSNKELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDI 139 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N + IA+GE+ ++E+D + FG+ + EI++ Sbjct: 140 VVNGRIIARGEVIVLEDDPSRFGISLTEIID 170 >gi|110632666|ref|YP_672874.1| flagellar motor switch protein FliN [Mesorhizobium sp. BNC1] gi|110283650|gb|ABG61709.1| flagellar motor switch protein FliN [Chelativorans sp. BNC1] Length = 121 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 70/107 (65%), Gaps = 5/107 (4%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQIILGSCCMQISNLVNL 96 + K++ + + I + + E++ N D +++IPV++QI+LGS M +S L+ L Sbjct: 8 VHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSELMAL 67 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +G ++LD+R+GE V+I +N + IA+GEITI+E D + FGVR+ EI Sbjct: 68 QRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114 >gi|163844318|ref|YP_001621973.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445] gi|163675041|gb|ABY39151.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445] Length = 106 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 57/81 (70%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DLIM IPV +Q++LG M +S+L+ L G VITLDK++G+ VDI +N + IA+G Sbjct: 25 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRVIARG 84 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D FGV + EI+ Sbjct: 85 EVIVLEDDSPRFGVSLTEIIG 105 >gi|23499886|ref|NP_699326.1| flagellar motor switch protein FliN [Brucella suis 1330] gi|23463461|gb|AAN33331.1| flagellar motor switch protein FliN, putative [Brucella suis 1330] Length = 106 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 58/81 (71%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DLIM IPV +Q++LG M +S+L+ L G VITLDK++G+ VDI +N + IA+G Sbjct: 25 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGCGAVITLDKQIGDPVDIVVNGRVIARG 84 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+D + FGV + EI+ Sbjct: 85 EVIVLEDDSSRFGVSLTEIIG 105 >gi|254702551|ref|ZP_05164379.1| Flagellar motor switch FliN protein [Brucella suis bv. 3 str. 686] gi|261753129|ref|ZP_05996838.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686] gi|261742882|gb|EEY30808.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686] Length = 107 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 37/74 (50%), Positives = 55/74 (74%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI +N + IA+G Sbjct: 34 SKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARG 93 Query: 125 EITIMEEDDTHFGV 138 E+ ++E+D + FGV Sbjct: 94 EVIVLEDDSSRFGV 107 >gi|217976218|ref|YP_002360365.1| flagellar motor switch protein FliN [Methylocella silvestris BL2] gi|217501594|gb|ACK49003.1| flagellar motor switch protein FliN [Methylocella silvestris BL2] Length = 110 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 37/80 (46%), Positives = 58/80 (72%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + N + I+ IPV +Q++LGS M +S+L+ L +G VI LD RVGE VD+ +N + IA+GE Sbjct: 25 SRNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVVVNGRIIARGE 84 Query: 126 ITIMEEDDTHFGVRVIEILN 145 I ++E+D++ FGV + EI+ Sbjct: 85 IVVVEDDNSRFGVSLTEIVG 104 >gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571] gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571] Length = 120 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 55/74 (74%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +M IPV +Q++LGS M ++NL+ L +G ++ LD RVGE VD+ +N + IA+GE+ ++EE Sbjct: 40 VMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEVMVVEE 99 Query: 132 DDTHFGVRVIEILN 145 D++ FGV + EI+ Sbjct: 100 DNSRFGVTLTEIVG 113 >gi|296447444|ref|ZP_06889369.1| flagellar motor switch protein FliN [Methylosinus trichosporium OB3b] gi|296255064|gb|EFH02166.1| flagellar motor switch protein FliN [Methylosinus trichosporium OB3b] Length = 123 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 59/82 (71%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + + I+ IPV MQ+I+GS M +SNL+ L +G ++ LD+++GE VD+ +N + IA+GE Sbjct: 36 SRKLESILRIPVVMQVIVGSVTMPVSNLMKLGRGAIVPLDQKIGEPVDVVVNGRLIARGE 95 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + ++E+D+T FGV + EI+ + Sbjct: 96 VVVVEDDNTRFGVSLTEIIEPR 117 >gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] Length = 132 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 56/78 (71%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N + I+ IPV +Q++LGS M +++L+ L +G VI LD RVGE V++ +N + +A+G + Sbjct: 47 NLEPILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVV 106 Query: 128 IMEEDDTHFGVRVIEILN 145 ++E++++ FGV + EI+ Sbjct: 107 VVEDENSRFGVSLTEIVG 124 >gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] Length = 131 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 56/79 (70%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N + I+ IPV +Q++LGS M +++L+ L +G VI LD RVGE V++ +N + +A+G + Sbjct: 47 NLEPILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVV 106 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++E++++ FGV + EI+ Sbjct: 107 VVEDENSRFGVSLTEIVGG 125 >gi|114706763|ref|ZP_01439663.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Fulvimarina pelagi HTCC2506] gi|114537711|gb|EAU40835.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Fulvimarina pelagi HTCC2506] Length = 131 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 56/76 (73%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DL++++ V MQ++LGS M +S L+ L++G ++ LD +VG+ +D+ +N + IA+GEI Sbjct: 41 DLDLVLDVSVTMQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIV 100 Query: 128 IMEEDDTHFGVRVIEI 143 ++++DD FGV + E+ Sbjct: 101 VLDQDDQQFGVTLTEV 116 >gi|300024613|ref|YP_003757224.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526434|gb|ADJ24903.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] Length = 140 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 2/93 (2%) Query: 53 PISSDSNNILEKS--TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 P S++ I E DN +I +PV M+++LGS M ++ L L+KG V+ LDK VG+ Sbjct: 41 PADSEAGGIEEPQIEADNSAMIAGLPVMMKVVLGSAKMPVATLAKLAKGSVVKLDKMVGD 100 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 VDI +N IA+GE+ I+ E + FGV + ++ Sbjct: 101 PVDILVNGHLIARGEVVILNEASSRFGVVLTQV 133 >gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 366 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NFDLI+++PV++ + LG I ++NL+ G VI LDK G+ VDI +N + IA+GE+ Sbjct: 283 NFDLIVDVPVRITVRLGQAAKTIGEILNLTPGSVIELDKMAGDPVDILVNGKLIARGEVV 342 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ EI+N Sbjct: 343 VIDE---NFGVRITEIVN 357 >gi|312115254|ref|YP_004012850.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium vannielii ATCC 17100] gi|311220383|gb|ADP71751.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium vannielii ATCC 17100] Length = 120 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 68/101 (67%), Gaps = 4/101 (3%) Query: 49 NISEPISSDSNNI--LEKSTD--NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +++E ++ + ++ L K D + + ++ IP+ ++++LGS M I + L +G VI L Sbjct: 16 DVAEEVTRAAASLIGLGKGGDPGSLERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPL 75 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D++VG++VD+ IN + IAKGEI +++E+ + FGV + E+++ Sbjct: 76 DRKVGDAVDVMINGRIIAKGEIVVLDEEGSRFGVTLTEMID 116 >gi|323139659|ref|ZP_08074701.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242] gi|322395091|gb|EFX97650.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242] Length = 124 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 5/97 (5%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + P+ +D + + D I+ IPV +Q+++GS + +S+L+ L +G VI LD RVG+ Sbjct: 28 APPVDTDKSQL-----RRIDSILRIPVVVQVVVGSATLPVSSLLKLGRGAVIPLDHRVGD 82 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VDI +N + IA+GE+ ++EED FGV + EI Q Sbjct: 83 PVDIVVNGRTIARGEVVVVEEDGARFGVSLTEICEPQ 119 >gi|209963529|ref|YP_002296444.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|209956995|gb|ACI97631.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 119 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 2/81 (2%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D I N+PV +Q++LG M +S L+ L +G V+ L+++VGE+VD+ +N++ IA+GE+ Sbjct: 37 DELRAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIARGEV 96 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 I+ DD GV + EI+ A+ Sbjct: 97 VIV--DDGRLGVTMTEIVKAE 115 >gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42] gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42] Length = 378 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D N + S +N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI + Sbjct: 284 DHNEAAQGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 343 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N + +AKGE+ ++EE +FGVRV +IL+ Sbjct: 344 NQRIVAKGEVVVIEE---NFGVRVTDILS 369 >gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon 786 str. D14] gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon 786 str. D14] Length = 415 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 58/79 (73%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +L+M+IP+K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ Sbjct: 331 NNLNLLMDIPLKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEV 390 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E+ FGVRV +I++ Sbjct: 391 VVIDEN---FGVRVTDIVS 406 >gi|162147463|ref|YP_001601924.1| flagellar motor switch protein fliN [Gluconacetobacter diazotrophicus PAl 5] gi|209545572|ref|YP_002277801.1| flagellar motor switch protein FliN [Gluconacetobacter diazotrophicus PAl 5] gi|161786040|emb|CAP55622.1| putative flagellar motor switch protein fliN [Gluconacetobacter diazotrophicus PAl 5] gi|209533249|gb|ACI53186.1| flagellar motor switch protein FliN [Gluconacetobacter diazotrophicus PAl 5] Length = 125 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 56/82 (68%), Gaps = 2/82 (2%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + + + +IPVK+ ++GS M +S L+ L +G V+ LD+++GE+VDI NN+ IA+G Sbjct: 41 GSGQMEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARG 100 Query: 125 EITIMEEDDTHFGVRVIEILNA 146 E+ ++ DD H GV + EI+++ Sbjct: 101 EVVVV--DDNHIGVTMTEIISS 120 >gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC 43970] gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC 43970] Length = 129 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 66/102 (64%), Gaps = 7/102 (6%) Query: 48 DNISEPISSDS----NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 D +SE +++DS +N++ +++ DLI++IPVKM + LG M I L+ LS+G V++ Sbjct: 21 DAMSEQLAADSSPPKDNLVPNFSEDLDLILDIPVKMTVELGRTKMTIKELLRLSQGSVVS 80 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L+ GE +DI IN IA+GE+ ++ + FG+R+ +I+ Sbjct: 81 LEGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIIT 119 >gi|328545472|ref|YP_004305581.1| flagellar motor switch protein [polymorphum gilvum SL003B-26A1] gi|326415213|gb|ADZ72276.1| Probable flagellar motor switch protein [Polymorphum gilvum SL003B-26A1] Length = 136 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 60/80 (75%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D I+ IPV +Q++LGS M ++NL+ L +G VI L+ RVGE VDI +N + +A+GE+ Sbjct: 51 NLDTILGIPVNIQVVLGSATMLVANLLKLGRGAVIPLNHRVGEPVDIVVNGRVVARGEVV 110 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E+D++ FGV + EI++AQ Sbjct: 111 VVEDDNSRFGVSLTEIISAQ 130 >gi|209964122|ref|YP_002297037.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|7025357|gb|AAF35847.1|AF220003_1 polar flagellar motor switch protein FpiN [Rhodospirillum centenum] gi|209957588|gb|ACI98224.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 108 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 57/79 (72%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + +IPV++ +LG C MQ+S+L+ L +G V+ LD++VGE++DI +NN+ +A+GE+ Sbjct: 30 DLESVYDIPVQISAVLGKCTMQVSSLMKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVV 89 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++E+ GV + EI+ + Sbjct: 90 VVED---RLGVTMTEIIKS 105 >gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681] gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681] Length = 436 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 58/79 (73%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +L+M+IP+++ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ Sbjct: 352 NNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEV 411 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E+ FGVRV +I++ Sbjct: 412 VVIDEN---FGVRVTDIVS 427 >gi|85060032|ref|YP_455734.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] gi|84780552|dbj|BAE75329.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] Length = 132 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 14/115 (12%) Query: 38 SEMLIQKND-------VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90 +E L+Q+ D I P++ N S + DLIM+IPVKM + LG M I Sbjct: 15 AEALVQQGGDRERAVSTDGIFSPLAGKGGN---GSLQDIDLIMDIPVKMTVELGRTKMTI 71 Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L+ L++G V+ LD GE +DI IN IA+GE+ + ++ +GVR+ I+ Sbjct: 72 KELLRLAQGSVVALDGLAGEPLDILINGYLIAQGEVVVADK----YGVRITSIIT 122 >gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein [Paenibacillus polymyxa SC2] gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus polymyxa SC2] Length = 437 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 60/88 (68%), Gaps = 3/88 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S + +N +L+M+IP+++ + LG QI +++ LS+G +I LDK GE VDI +N Sbjct: 344 SGGFPQVDENNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMVN 403 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145 N+ IAKGE+ +++E+ FGVRV +I++ Sbjct: 404 NKLIAKGEVVVIDEN---FGVRVTDIVS 428 >gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130] gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130] Length = 171 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 73/131 (55%), Gaps = 5/131 (3%) Query: 21 HIDNPLQD-TNVSSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNI 75 +D P ++ T +SP + D D +++ ++ + S + + D + + +I Sbjct: 4 ELDGPAEEVTQTTSPEIEGAPATPRYDFDKVADALADVSPAASRSPVSPKRDATNSLWSI 63 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+ + ++LG + +S+L+NLS GD ++LD+R+G+ V+I N IA G++ ++E Sbjct: 64 PLDVDVVLGHARLPVSDLMNLSIGDTLSLDRRIGDPVEIVANGTTIAWGQLCAVDESGER 123 Query: 136 FGVRVIEILNA 146 FGVR+ ++ A Sbjct: 124 FGVRLTKLSGA 134 >gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942] gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942] Length = 379 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D N + +N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI + Sbjct: 285 DPNEAPQAHLNNLDMLMDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 344 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N + +AKGE+ ++EE +FGVRV +IL+ Sbjct: 345 NQRIVAKGEVVVIEE---NFGVRVTDILS 370 >gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC 43243] gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC 43243] Length = 197 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 63/96 (65%), Gaps = 5/96 (5%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +P + D + + +K +N DLIM++P+++ + LG I +++ + G +I L+K GES Sbjct: 107 QPFAGDLSALSQK--ENIDLIMDVPLEVTVELGRTSKTIKDILEFAPGTIIELNKIAGES 164 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VD+ +N + +AKGE+ ++EE+ FGVR+ EI+ Q Sbjct: 165 VDVLVNGKNVAKGEVVVIEEN---FGVRITEIIKEQ 197 >gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sp. AT1b] gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sp. AT1b] Length = 376 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 5/93 (5%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P+ S ++ E + N L+ ++P+ + + LG + ++ LS+G +I LDK GE V Sbjct: 281 PLQSPASQ--EAAPANLGLLYDVPLNVTVELGRTKKSVREVLELSQGSIIELDKLAGEPV 338 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 DI +N Q+IA+GE+ ++EE+ FGVRV EI+ Sbjct: 339 DIYVNQQRIARGEVVVIEEN---FGVRVTEIIQ 368 >gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. JDR-2] gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. JDR-2] Length = 421 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 57/78 (73%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+++IP+K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ Sbjct: 338 NLNLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVV 397 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV +I++ Sbjct: 398 VIDE---NFGVRVTDIVS 412 >gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus curdlanolyticus YK9] gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus curdlanolyticus YK9] Length = 411 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 57/78 (73%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+++IP+K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ Sbjct: 328 NLNLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVV 387 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV +I++ Sbjct: 388 VIDE---NFGVRVTDIVS 402 >gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5] gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto BEST195] gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5] Length = 378 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D N ++ N D++++IP+ + + LG + ++ LS G +I LDK GE VDI + Sbjct: 284 DPNEAVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 343 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N + +AKGE+ ++EE +FGVRV +IL+ Sbjct: 344 NQRIVAKGEVVVIEE---NFGVRVTDILS 369 >gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. SMY] gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName: Full=CheY-P phosphatase FliY; AltName: Full=Flagellar motor switch protein FliY gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis] gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. subtilis str. 168] Length = 378 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D N ++ N D++++IP+ + + LG + ++ LS G +I LDK GE VDI + Sbjct: 284 DPNEAVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 343 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N + +AKGE+ ++EE +FGVRV +IL+ Sbjct: 344 NQRIVAKGEVVVIEE---NFGVRVTDILS 369 >gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Coprothermobacter proteolyticus DSM 5265] gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Coprothermobacter proteolyticus DSM 5265] Length = 287 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 69/108 (63%), Gaps = 4/108 (3%) Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 S ++Q+NDV++++ P +I + N +L++++ V + + LG + I +L++L Sbjct: 174 TSASVMQENDVEDVTFPQLRPEGDI-QPLPRNLELLLDVKVNVSVELGRSRVSIKDLLSL 232 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 G +ITLDK GE VDI +N + IAKGE+ +++E FGVR+++I+ Sbjct: 233 GSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDE---SFGVRILDII 277 >gi|83309599|ref|YP_419863.1| flagellar motor switch protein [Magnetospirillum magneticum AMB-1] gi|82944440|dbj|BAE49304.1| Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magneticum AMB-1] Length = 108 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 57/84 (67%), Gaps = 3/84 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + +S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ + Sbjct: 24 MPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLV 83 Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145 A+GE+ ++E+ GV + EI+ Sbjct: 84 ARGEVVVVED---RLGVTMTEIIK 104 >gi|315648126|ref|ZP_07901227.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus vortex V453] gi|315276772|gb|EFU40115.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus vortex V453] Length = 419 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +L+M+IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+ Sbjct: 335 NNLNLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEV 394 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E+ FGVRV +I++ Sbjct: 395 VVIDEN---FGVRVTDIVS 410 >gi|23015636|ref|ZP_00055406.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magnetotacticum MS-1] Length = 108 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 57/83 (68%), Gaps = 3/83 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + +S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ + Sbjct: 24 MPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLV 83 Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144 A+GE+ ++E+ GV + EI+ Sbjct: 84 ARGEVVVVED---RLGVTMTEII 103 >gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] Length = 389 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 15/114 (13%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 SSPT +Q+ N P S ++ N D+++++P+K+ + LG IS Sbjct: 281 SSPT------VQEAAFSNFESPTLS------KQEHRNLDMLLDVPLKVTVELGRTKQSIS 328 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 ++++LS G +I LDK GE VDI +N + +A+GE+ ++EE +FGVRV +I++ Sbjct: 329 DILDLSAGSIIELDKLAGEPVDILVNEKLVAEGEVVVIEE---NFGVRVTDIIS 379 >gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus AHT2] gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus AHT2] Length = 134 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 K D D +S S + + + N D ++++P+++ + LG M I+ ++ L++G VI Sbjct: 27 KPDFDELSADAGSPAPSTASTGSQNLDFLLDVPLEVSVELGRTSMIINKMLQLTQGSVIE 86 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 LDK GE V+I +N + + KGE+ ++ E FG+RV EI++ Sbjct: 87 LDKAAGEPVEIFVNQKLMGKGEVVVVNE---RFGIRVTEIIS 125 >gi|329929333|ref|ZP_08283086.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5] gi|328936702|gb|EGG33145.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5] Length = 420 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +L+M+IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+ Sbjct: 336 NNLNLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEV 395 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E+ FGVRV +I++ Sbjct: 396 VVIDEN---FGVRVTDIVS 411 >gi|261407971|ref|YP_003244212.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. Y412MC10] gi|261284434|gb|ACX66405.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. Y412MC10] Length = 420 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +L+M+IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+ Sbjct: 336 NNLNLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEV 395 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E+ FGVRV +I++ Sbjct: 396 VVIDEN---FGVRVTDIVS 411 >gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4] Length = 388 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 13/137 (9%) Query: 19 SMHIDNPLQDTNVSSP--TNNSEMLIQKNDVDNISEPI--------SSDSNNILEKSTDN 68 SM P+Q+T P T Q ++S+P+ S + E N Sbjct: 246 SMATSTPVQETQSQQPFTTYQQPQAPQHFGGQHLSQPVNVQPAEFASFGQPALQESEARN 305 Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +++++IP+ + + LG + ++ LS+G +I LDK GE VDI +NN+ IAKGE+ + Sbjct: 306 LNMLLDIPLSVTVELGRTKRSVKEILELSQGSIIELDKLAGEPVDILVNNRLIAKGEVVV 365 Query: 129 MEEDDTHFGVRVIEILN 145 ++E +FGVR+ +I++ Sbjct: 366 IDE---NFGVRLTDIVS 379 >gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens DSM 7] gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens DSM 7] gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208] gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens LL3] Length = 377 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S +N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKG Sbjct: 291 SRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKG 350 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++EE +FGVRV +IL+ Sbjct: 351 EVVVIEE---NFGVRVTDILS 368 >gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1] gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus WK1] Length = 383 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S + + E + N D++++IP+++ + LG + ++++LS G +I LDK GE VDI Sbjct: 287 SFEPAPLPEAESRNLDMLLDIPLQVTVELGRTKRSVQDILSLSSGSIIELDKLAGEPVDI 346 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +NN+ IAKGE+ +++E+ FGVRV I++ Sbjct: 347 LVNNKLIAKGEVVVIDEN---FGVRVTSIIS 374 >gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2] gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580] gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2] Length = 377 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 17/142 (11%) Query: 18 RSMHIDNPLQDTNVSSP------TNNSEMLIQKNDVDNISEPI--------SSDSNNILE 63 ++ + P+Q+ +P T E ++ +SEP+ S + Sbjct: 230 KTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKRQGTAKVSEPVQVAPAEFQSFAPQTEAQ 289 Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AK Sbjct: 290 PHLQNLDMLMDIPLSVTVELGRTNRSVKEVLELSTGSIIELDKLAGEPVDILVNQRVVAK 349 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ +++E+ FGVRV +IL+ Sbjct: 350 GEVVVIDEN---FGVRVTDILS 368 >gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163] Length = 138 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 19/133 (14%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDV--DNISEPISSDSNNILEKSTD---------NFDLI 72 +P+ D+N N S+ I +D+ D +SE S S + + KS D + D+I Sbjct: 4 SPMSDSN-----NPSDGDISADDMWADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMI 58 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 M+IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + Sbjct: 59 MDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD- 117 Query: 133 DTHFGVRVIEILN 145 +GVR+ +I+ Sbjct: 118 --KYGVRITDIIT 128 >gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus silvestris StLB046] Length = 422 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S +S NI + N +++++IP+++ + LG + ++ LS G +I LDK GE VDI Sbjct: 326 SFESANITQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 385 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N++ IAKGE+ +++E+ FGVR+ +IL+ Sbjct: 386 LVNSRLIAKGEVVVIDEN---FGVRITDILS 413 >gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus JW 200] gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus JW 200] Length = 375 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 61/89 (68%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS++ +K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI Sbjct: 281 DSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILA 340 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N + IAKGE+ +++E +FGVR+I+I++ Sbjct: 341 NGKYIAKGEVVVIDE---NFGVRIIDIVH 366 >gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911] gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911] Length = 408 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 59/89 (66%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + E T N +++++IP+++ + LG + +++ LS G +I LDK GE VDI + Sbjct: 314 EPQQLQESETKNLNMLLDIPLQVTVELGRTKRSVKDILELSAGSIIELDKLAGEPVDILV 373 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N++ IAKGE+ ++EE +FGVRV +I++ Sbjct: 374 NSRLIAKGEVVVIEE---NFGVRVTDIIS 399 >gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 375 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 61/89 (68%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS++ +K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI Sbjct: 281 DSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILA 340 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N + IAKGE+ +++E +FGVR+I+I++ Sbjct: 341 NGKYIAKGEVVVIDE---NFGVRIIDIVH 366 >gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629] Length = 404 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 5/95 (5%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P + N + + +N DLIM++P+++ + LG IS +++ G +I L+K GE + Sbjct: 308 PFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKLAGEPI 365 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 DI +N + +AKGE+ ++EE FGVR+ EI+N++ Sbjct: 366 DILVNGKYVAKGEVVVIEE---SFGVRITEIVNSK 397 >gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1] Length = 404 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 5/95 (5%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P + N + + +N DLIM++P+++ + LG IS +++ G +I L+K GE + Sbjct: 308 PFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKLAGEPI 365 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 DI +N + +AKGE+ ++EE FGVR+ EI+N++ Sbjct: 366 DILVNGKYVAKGEVVVIEE---SFGVRITEIVNSK 397 >gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 375 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 61/89 (68%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS++ +K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI Sbjct: 281 DSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILA 340 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N + IAKGE+ +++E +FGVR+I+I++ Sbjct: 341 NGKYIAKGEVVVIDE---NFGVRIIDIVH 366 >gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41] gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus C3-41] Length = 407 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S DSN I + N +++++IP+++ + LG + ++ LS G +I LDK GE VDI Sbjct: 311 SFDSNVISQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 370 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N++ IAKGE+ +++E +FGVR+ ++L+ Sbjct: 371 LVNSRLIAKGEVVVIDE---NFGVRITDVLS 398 >gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. spizizenii str. W23] Length = 379 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D N + N D++++IP+ + + LG + ++ LS G +I LDK GE VDI + Sbjct: 285 DPNEASQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILV 344 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N + +AKGE+ ++EE +FGVRV +IL+ Sbjct: 345 NQRIVAKGEVVVIEE---NFGVRVTDILS 370 >gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905] gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905] Length = 407 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S DSN I + N +++++IP+++ + LG + ++ LS G +I LDK GE VDI Sbjct: 311 SFDSNVISQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 370 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N++ IAKGE+ +++E +FGVR+ ++L+ Sbjct: 371 LVNSRLIAKGEVVVIDE---NFGVRITDVLS 398 >gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC 27750] gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC 27750] Length = 437 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 61/93 (65%), Gaps = 5/93 (5%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +P ++D N I +K +N +LI ++P+++ + LG I +++ + G ++ L+K GES Sbjct: 349 QPFATDVNPISQK--ENIELIKDVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGES 406 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 VD+ +N + +AKGE+ ++EE FGVR+ EI+ Sbjct: 407 VDVLVNGKYVAKGEVVVIEE---SFGVRITEII 436 >gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio peptidovorans DSM 11002] Length = 384 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI +IPV++ + LG + +++ + G VI LDK GE VD+ +N + IAKGE+ Sbjct: 300 NIGLIADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVV 359 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV EILN Sbjct: 360 VIDE---NFGVRVTEILN 374 >gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica] Length = 144 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 11/127 (8%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE--------KSTDNFDLIMNIPVK 78 Q T+ ++ + +M + + +P S S I E + DLI++IPVK Sbjct: 11 QPTDTAATGSAEDMWAEALEQQAAQQPTSDSSAAIFESLEPQDALAHLSDIDLILDIPVK 70 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + +G+ Sbjct: 71 LSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGI 127 Query: 139 RVIEILN 145 R+ +I+ Sbjct: 128 RITDIIT 134 >gi|144897407|emb|CAM74271.1| flagellar motor switch protein [Magnetospirillum gryphiswaldense MSR-1] Length = 107 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 56/81 (69%), Gaps = 3/81 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ +A+ Sbjct: 25 RSARDLEAVYDIPVQVSAVLGKANMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVAR 84 Query: 124 GEITIMEEDDTHFGVRVIEIL 144 GE+ ++E+ GV + EI+ Sbjct: 85 GEVVVVED---RLGVTMTEII 102 >gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1] gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1] Length = 410 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S DSN I + N +++++IP+++ + LG + ++ LS G +I LDK GE VDI Sbjct: 314 SFDSNVISQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 373 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N++ IAKGE+ +++E +FGVR+ ++L+ Sbjct: 374 LVNSRLIAKGEVVVIDE---NFGVRITDVLS 401 >gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] Length = 129 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 16/123 (13%) Query: 32 SSPTNNSEMLIQKNDVDNI-----SEPISSD----SNNILEKSTDNFDLIMNIPVKMQII 82 ++PT+ ++ K +DN+ SE ++D N++ +++ DLI++IPVKM + Sbjct: 4 TTPTSGAD----KQSIDNLWGEAMSEQQTADNMPAKENLVPNFSEDLDLILDIPVKMTVE 59 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG M I L+ LS+G V++L+ GE +DI IN IA+GE+ ++ + FG+R+ + Sbjct: 60 LGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITD 116 Query: 143 ILN 145 I+ Sbjct: 117 IIT 119 >gi|56384263|gb|AAV85781.1| FliN [Azospirillum brasilense] Length = 109 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 55/79 (69%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + +IPV++ +LG MQ+S L+ L +G V+ LD++VGE++DI +NN+ +A+GE+ Sbjct: 31 DLEAVYDIPVQISAVLGKSTMQVSQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVV 90 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++E+ G+ + EI+ + Sbjct: 91 VVED---RLGITMTEIIKS 106 >gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs] gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alkaliphilus oremlandii OhILAs] Length = 385 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 10/137 (7%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNILEKSTDN 68 KD + R M D P D + ++E +N+ NI P+ + D +++ +N Sbjct: 247 KDTMHPREMSYDTPNYDHRANF---SNEAAATRNEPVNI-RPVQFQAFDDDSVKGVMPEN 302 Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 LI ++P+K+ + LG +IS ++ G +I LDK VGE +DI +N Q +A GE+ + Sbjct: 303 ISLIQDVPLKITVELGRTVKKISEILEFGPGTIIELDKLVGEPLDILVNGQYVANGEVVV 362 Query: 129 MEEDDTHFGVRVIEILN 145 ++E ++G+RV +I+N Sbjct: 363 IDE---NYGIRVTDIVN 376 >gi|83591881|ref|YP_425633.1| flagellar motor switch protein [Rhodospirillum rubrum ATCC 11170] gi|83574795|gb|ABC21346.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum rubrum ATCC 11170] Length = 115 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 56/83 (67%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ +A+ Sbjct: 33 RSAADLEAVYDIPVQVSAVLGKAHMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVAR 92 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ ++ D GV + EI+ + Sbjct: 93 GEVVVV---DDRLGVTMTEIIKS 112 >gi|209884355|ref|YP_002288212.1| flagellar motor switch phosphatase FliY [Oligotropha carboxidovorans OM5] gi|209872551|gb|ACI92347.1| flagellar motor switch phosphatase FliY [Oligotropha carboxidovorans OM5] Length = 119 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + ++PV++ +LG M +S+L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ Sbjct: 41 DLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVV 100 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E+ GV + EI+ A+ Sbjct: 101 LVED---KLGVTMTEIIKAE 117 >gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT 1] gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT 1] Length = 141 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +S N + I++IP+++ + LG I ++V+L+ G ++ D+ VGE VDIT+N + IA+ Sbjct: 54 QSHPNLERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIAR 113 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ ++ E HFGVR+ +I+ Q Sbjct: 114 GEVVVVGE---HFGVRISQIITPQ 134 >gi|299131951|ref|ZP_07025146.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2] gi|298592088|gb|EFI52288.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2] Length = 119 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + ++PV++ +LG M +S+L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ Sbjct: 41 DLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVV 100 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E+ GV + EI+ A+ Sbjct: 101 LVED---KLGVTMTEIIKAE 117 >gi|323490152|ref|ZP_08095372.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2] gi|323396200|gb|EGA89026.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2] Length = 351 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 62/91 (68%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S D+ ++ T+N +L+++IP+++ + LG + +++ +S+G +I LDK GE VDI Sbjct: 255 SFDNTDVASSETNNLNLLLDIPLQVTVELGRTKRMVKDILEISQGSIIELDKLAGEPVDI 314 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 INN+ IA GE+ +++E+ FGVRV ++L+ Sbjct: 315 LINNKLIAVGEVVVIDEN---FGVRVTDVLS 342 >gi|254470176|ref|ZP_05083580.1| flagellar motor switch protein [Pseudovibrio sp. JE062] gi|211960487|gb|EEA95683.1| flagellar motor switch protein [Pseudovibrio sp. JE062] Length = 111 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 59/83 (71%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ ++ + + ++PV++ +LG M++S+L++L G V+ LD++VGE++D+ +NN+ IA+ Sbjct: 30 KAAEDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIAR 89 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ ++E+ GV + EI+ A Sbjct: 90 GEVVLVED---KLGVTMTEIIKA 109 >gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium modesticaldum Ice1] gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium modesticaldum Ice1] Length = 375 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 3/82 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K T N LIM++P+++ + LG I ++++L G VI LDK GE VDI +N + IAK Sbjct: 288 KDTTNLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAK 347 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ +++E+ FGVR+ +I++ Sbjct: 348 GEVVVIDEN---FGVRITDIVS 366 >gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch Maree] gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str. Loch Maree] Length = 386 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 65/99 (65%), Gaps = 11/99 (11%) Query: 52 EPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 EP+S I E +T +N DLI+++P+++ ++LG M + +++NL G +I LDK Sbjct: 288 EPLS-----IRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E V+I +N +K+A GE+ +++E +FGVR+ I+++Q Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDE---NFGVRITSIVSSQ 378 >gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC 35580] gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC 35580] Length = 382 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 3/87 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 N + E N LIM++ ++M + LG I ++++ +G +I LDK GE VDI +N+ Sbjct: 291 NGVTEAEQGNIGLIMDVFMEMTVELGRTRKMIKEILSMGEGHIIELDKLAGEPVDILVNH 350 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145 + IAKGE+ +++E+ FGVRV EIL+ Sbjct: 351 KPIAKGEVVVIDEN---FGVRVTEILS 374 >gi|296283237|ref|ZP_06861235.1| flagellar motor switch protein [Citromicrobium bathyomarinum JL354] Length = 126 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 D + +PVKMQ +LG M +S L++++ G V+ LD++VGE VDI ++N+ IA+GE+ Sbjct: 49 GLDAVHEVPVKMQAVLGRARMTVSELMSIAPGRVVELDRKVGEPVDIFVSNRLIARGEVV 108 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ D GV + EI++ Sbjct: 109 LI---DKALGVTLTEIVH 123 >gi|118593639|ref|ZP_01551015.1| flagellar motor switch protein [Stappia aggregata IAM 12614] gi|118433750|gb|EAV40411.1| flagellar motor switch protein [Stappia aggregata IAM 12614] Length = 111 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 59/89 (66%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS + +S + + + ++PV++ +LG M +S+L+ L+ G V+ LD++VGE++DI + Sbjct: 23 DSETHVPQSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLASGTVLELDRKVGEAIDIYV 82 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N++ +A+GE+ ++E+ GV + EI+ Sbjct: 83 NDRLVARGEVVLVED---KLGVTMTEIIK 108 >gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf] gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657] gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf] gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str. 657] Length = 386 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I+++Q Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378 >gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC 2916] gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC 2916] Length = 386 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I+++Q Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378 >gi|15615008|ref|NP_243311.1| flagellar motor switch protein [Bacillus halodurans C-125] gi|10175065|dbj|BAB06164.1| flagellar motor switch protein [Bacillus halodurans C-125] Length = 401 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 55/78 (70%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D++++IP+++ + LG I ++++ ++G +I LDK GE VDI +N + IAKGE+ Sbjct: 318 NLDMLLDIPLQVTVELGRTKRSIKDILSFTQGSIIELDKLAGEPVDILVNQKLIAKGEVV 377 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV EIL+ Sbjct: 378 VIDE---NFGVRVTEILS 392 >gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402 065] Length = 386 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I+++Q Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378 >gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str. Langeland] gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str. Langeland] gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str. 230613] Length = 386 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I+++Q Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378 >gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2] gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2] Length = 432 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 60/91 (65%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S + ++ + T N D++++IP+++ + LG + ++ LS G +I LDK GE VDI Sbjct: 336 SFEPYHMQDHETKNLDMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDI 395 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +NN+ IA+GE+ +++E+ FGVRV +I++ Sbjct: 396 LVNNRLIAQGEVVVIDEN---FGVRVTDIIS 423 >gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4] gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4] Length = 112 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 59/95 (62%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + P D + + + + ++PV++ +LGS M +S+L+ L+ G V+ LD++VGE Sbjct: 18 AAPSEEDGATGATQGAGDLEAVFDVPVRISAVLGSSKMHVSDLLKLASGTVLELDRKVGE 77 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 ++DI +N++ +A+GE+ ++E+ GV + EI+ Sbjct: 78 AIDIYVNDRLVARGEVVLVED---KLGVTMTEIIK 109 >gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str. ATCC 3502] gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC 19397] gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall] gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str. Kyoto] gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str. ATCC 3502] gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str. ATCC 19397] gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str. Hall] gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str. Kyoto] Length = 386 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I+++Q Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378 >gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra] gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str. Okra] Length = 386 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 301 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 360 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I+++Q Sbjct: 361 VVVDE---NFGVRITSIVSSQ 378 >gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073] gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC 39073] Length = 395 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 3/84 (3%) Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + S+ N DLI+++P+ +++ILG+ +I ++++L+ G ++ LD+ V E V IT+N Sbjct: 304 VYGASSRNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTP 363 Query: 121 IAKGEITIMEEDDTHFGVRVIEIL 144 IA+GE+ I+ E+ FGVR+ IL Sbjct: 364 IAQGEVVIVNEN---FGVRITHIL 384 >gi|254502033|ref|ZP_05114184.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] gi|222438104|gb|EEE44783.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] Length = 111 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 15/119 (12%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 QDTN+ P + E + + + I P +S + + + ++PV++ +LG Sbjct: 5 QDTNI--PLDELEAPDRAGEQEEIPHP----------QSAADLEAVFDVPVRISAVLGHS 52 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M +S+L+ L+ G V+ LD++VGE++DI +N++ +A+GE+ ++E+ GV + EI+ Sbjct: 53 KMHVSDLLKLASGTVLELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIK 108 >gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032] gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032] Length = 374 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 9/100 (9%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + + SEP S S N D++M+IP+ + + LG + ++ LS G +I LD Sbjct: 275 EFEAFSEPQHSTSQ------LGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELD 328 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 K GE VDI +N + +AKGE+ +++E +FGVRV +IL+ Sbjct: 329 KLAGEPVDILVNKRIVAKGEVVVIDE---NFGVRVTDILS 365 >gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] Length = 133 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 12/108 (11%) Query: 47 VDNISEPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 D +SE S S + + KS D + D+IM+IPVK+ + LG M I L+ LS Sbjct: 19 ADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMIMDIPVKLTVELGRTKMTIKELLRLS 78 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 79 QGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIIT 123 >gi|84502360|ref|ZP_01000496.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597] gi|84389172|gb|EAQ01969.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597] Length = 128 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 2/78 (2%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D ++N+ + +QI+LG M IS L+ LS+G +I LDK++GE VDI IN++ +A+G++ Sbjct: 47 NIDAMLNVGLNIQIVLGRTRMPISQLLKLSRGSIIELDKKIGEPVDIVINDRLVARGDLV 106 Query: 128 IMEEDDTHFGVRVIEILN 145 ++E+ GV +IEI+ Sbjct: 107 KLDEE--RVGVSLIEIVK 122 >gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1] gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1] Length = 135 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 4/91 (4%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S DS N+ S + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI Sbjct: 39 SFDSGNV-AGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDI 97 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 98 LINGYLIAQGEVVVVND---KYGVRITDIIT 125 >gi|115522993|ref|YP_779904.1| flagellar motor switch protein [Rhodopseudomonas palustris BisA53] gi|115516940|gb|ABJ04924.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] Length = 116 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 10/120 (8%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 DT V P NS + DVD E +S + + + + ++PV++ +LG Sbjct: 5 DTKVPLPDLNSGDVPAMTDVDYNDEEHAS-------RVAADLEAVFDVPVQVSAVLGRSK 57 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 M + L+ L G V+ LD++VGE++DI +NN+ IA+GE+ ++E+ GV + EI+ A+ Sbjct: 58 MDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLIARGEVVLVED---KLGVTMTEIIAAE 114 >gi|288960027|ref|YP_003450367.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] gi|288912335|dbj|BAI73823.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] Length = 105 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 55/79 (69%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ +A+GE+ Sbjct: 27 DLEAVYDIPVQISAVLGKSTMQVAQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVV 86 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++E+ G+ + EI+ + Sbjct: 87 VVED---RLGITMTEIIKS 102 >gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC 15579] gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC 15579] Length = 390 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 56/81 (69%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI+++P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 305 NNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEV 364 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 ++ D +FGVR+ I+++Q Sbjct: 365 VVV---DENFGVRITNIVSSQ 382 >gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB] gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB] Length = 135 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 4/91 (4%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S DS N+ S + DLIM+IPVK+ + LG M I L+ L++G V++LD GE +DI Sbjct: 39 SFDSANV-AGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDI 97 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 98 LINGYLIAQGEVVVVND---KYGVRITDIIT 125 >gi|296534812|ref|ZP_06897160.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] gi|296264860|gb|EFH11137.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] Length = 110 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 58/92 (63%), Gaps = 2/92 (2%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P + ++ + + + +IPV++ +LG MQ+S L+ L +G V+ LD+++GE+V Sbjct: 15 PEAPEAEPRRTGGVGDLNAVYDIPVQVSAVLGRATMQVSQLLKLGRGAVVELDRKLGEAV 74 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 DI +NN+ +A+GE+ ++ E+ GV + EI+ Sbjct: 75 DIYVNNRLVARGEVVMVGEN--RLGVTMTEIV 104 >gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043] gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043] Length = 175 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG + I L+ L++G VI LD GE +DI IN IA+GE+ Sbjct: 91 DLDLIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVV 150 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ D +G+R+ EI+ Sbjct: 151 VV---DDKYGIRITEII 164 >gi|58038896|ref|YP_190860.1| flagellar motor switch protein [Gluconobacter oxydans 621H] gi|58001310|gb|AAW60204.1| Flagellar motor switch protein FliN [Gluconobacter oxydans 621H] Length = 105 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 57/85 (67%), Gaps = 2/85 (2%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 +K+ ++ I +IPV + +LG M I+ L+ L +G V+ LD+++G+ +DI +NN+ IA Sbjct: 22 DKTPNDLQAIYDIPVTLSAVLGRATMPINQLLKLGRGAVVELDRKIGDPIDILVNNRLIA 81 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ ++ D+T GV + EI+ ++ Sbjct: 82 RGEVVMV--DETRLGVTMTEIVKSE 104 >gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS 2060] gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS 2060] Length = 116 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 KS + + + ++PV + +LG+ M I +L+ L G V+ LD++VGE++DI +NN+ +A+ Sbjct: 35 KSAADLEQVFDVPVVVSAVLGASRMPIGDLLRLGPGTVLELDRKVGEAIDIYVNNRLVAR 94 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ ++EE GV + EI+ + Sbjct: 95 GEVVLVEE---RLGVTMTEIVKS 114 >gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Bacillus pumilus ATCC 7061] gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Bacillus pumilus ATCC 7061] Length = 374 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D++M+IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ Sbjct: 291 NLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLAGEPVDILVNKRIVAKGEVV 350 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV +IL+ Sbjct: 351 VIDE---NFGVRVTDILS 365 >gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermosediminibacter oceani DSM 16646] gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermosediminibacter oceani DSM 16646] Length = 362 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM++P+++ + LG +I ++ + G +I L+K GE VDI +N + IA+GE+ Sbjct: 279 SLDLIMDVPLEISVELGRTVKKIKEILEIGPGSIIELEKLAGEPVDILVNGKLIARGEVV 338 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ D FGVR+ EILN+ Sbjct: 339 VI---DESFGVRITEILNS 354 >gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1] gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1] Length = 164 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T D +M+IP+ +++++G +QI L+NL G V+ LD+ E VDI +N + IAKGE Sbjct: 71 TKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRETTEPVDIKVNGKLIAKGE 130 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + ++ E FGVR+ EI + + Sbjct: 131 LVVVGE---KFGVRITEIYSEE 149 >gi|148260473|ref|YP_001234600.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5] gi|146402154|gb|ABQ30681.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5] Length = 132 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 ++ + + + + ++PV + +LG MQ+S L+ L +G V+ LD++ G+ +DI +NN+ IA Sbjct: 47 QRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIA 106 Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146 +GE+ ++ D+T G+ + EI+ + Sbjct: 107 RGEVVML--DETKLGITMTEIVKS 128 >gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor owensensis OL] gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor owensensis OL] Length = 376 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 16/127 (12%) Query: 31 VSSPTNNSEMLIQKN----------DVDNISEPISSDSNNILE--KSTDNFDLIMNIPVK 78 VS PTN + L Q + V N+S P+ +S + E K +N +LI+++P++ Sbjct: 249 VSQPTNKQKTLPQSHTQPPKKEQPQKVYNVS-PVQFESFDEEEERKYPENIELILDVPLE 307 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++E +FGV Sbjct: 308 ITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGV 364 Query: 139 RVIEILN 145 R+ +I+N Sbjct: 365 RITDIVN 371 >gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568] gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568] Length = 137 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G Sbjct: 50 SLQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQG 109 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + FGVR+ +I+ Sbjct: 110 EVVVVAD---KFGVRITDIIT 127 >gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] Length = 134 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T++ LI++IPVKM + LG M I L++LS+ V+ L+ + GE +DI IN IA+GE Sbjct: 48 TEDLSLILDIPVKMTVELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGE 107 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +M E +GVR+ +I+ Sbjct: 108 VVVMGE---QYGVRIADIVT 124 >gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM 2489] gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM 2489] Length = 408 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +LIM++ ++M + LG I +++ L +G +I LDK GE VDI +N++ IAKGE+ Sbjct: 325 NINLIMDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVNHKPIAKGEVV 384 Query: 128 IMEEDDTHFGVRVIEILNA 146 +++E+ FGVRV EIL A Sbjct: 385 VIDEN---FGVRVTEILPA 400 >gi|302343740|ref|YP_003808269.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM 2075] gi|301640353|gb|ADK85675.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM 2075] Length = 117 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 59/90 (65%), Gaps = 3/90 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 +D + L++ N D I++IP+++ + LG M I++L+ L +G V+ L+K GE ++I Sbjct: 22 ADGDGALQRPAQNIDFILDIPLEVTVELGRTSMLINDLLQLGQGSVVELNKLAGEPLEIL 81 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N + IA+GE+ ++ E FGVR+ +I++ Sbjct: 82 VNRKLIARGEVVVVNE---KFGVRLTDIVS 108 >gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13] gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13] Length = 137 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G Sbjct: 50 SLQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + FGVR+ +I+ Sbjct: 110 EVVVVAD---KFGVRITDIIT 127 >gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium 9_2_54FAA] Length = 145 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 5/109 (4%) Query: 38 SEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 +E + K+ V+N ++ I D+ + L + + DLI++IPVK+ + LG M I L+ Sbjct: 29 TENTLAKSAVENSADEIFQNLDNPSPLAGNLHDIDLILDIPVKLTVELGRTKMTIKELLR 88 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 LS+G V+ LD GE +DI IN IA+GE+ ++ + FGVR+ +I+ Sbjct: 89 LSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRITDII 134 >gi|297584048|ref|YP_003699828.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus selenitireducens MLS10] gi|297142505|gb|ADH99262.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus selenitireducens MLS10] Length = 412 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E N DL+M+IP+++ + LG I ++ L +G ++ LDK GE VDI +N + IA Sbjct: 324 ENEQRNLDLLMDIPLEVTVELGRTKRSIKEILELGQGSIVELDKLAGEPVDILVNQRLIA 383 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 KGE+ +++E +FGVRV +I++ Sbjct: 384 KGEVVVIDE---NFGVRVTDIVS 403 >gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13] Length = 410 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 60/91 (65%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S ++ + E +N +++++IP+++ + LG + +++ LS G +I LDK GE VDI Sbjct: 314 SFETTTVEESEPNNLNMLLDIPLQVTVELGRTKRSVKDILELSTGSIIELDKLAGEPVDI 373 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +NN+ IA+GE+ +++E FGVRV +I++ Sbjct: 374 LVNNKLIAQGEVVVIDES---FGVRVTDIVS 401 >gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermincola sp. JR] gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermincola potens JR] Length = 412 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ DLIM++P+++ + LG I ++NL+ G V+ LDK GE VD+ +N + +AK Sbjct: 325 KTPSTIDLIMDVPLQITVELGKAKKTIREILNLAPGSVVELDKLAGEPVDLMVNGKLLAK 384 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ +++E +FG+R+ +I++ Sbjct: 385 GEVVVIDE---NFGIRITDIVS 403 >gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131] gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131] Length = 138 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 8/125 (6%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKSTDNFDLIMNIPVKM 79 +P TN S +E L Q+ ++ S + D N L + +D D+IM+IPV++ Sbjct: 7 SPDASTNHDSEDLWAEALEQQKKAESASAGAQAFDNFDGQNPLNQLSD-IDMIMDIPVRL 65 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+R Sbjct: 66 SVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIR 122 Query: 140 VIEIL 144 + +I+ Sbjct: 123 ITDII 127 >gi|259907614|ref|YP_002647970.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96] gi|224963236|emb|CAX54720.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96] gi|283477456|emb|CAY73372.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163] gi|310764880|gb|ADP09830.1| Flagellar motor switch protein FliN [Erwinia sp. Ejp617] Length = 124 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE Sbjct: 38 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 97 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + ++ + FG+R+ +I+ Sbjct: 98 VVVVSD---KFGIRITDIIT 114 >gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31] gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a] gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7] gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a] gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b] gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23] gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a] gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a] gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a] gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1] gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26] gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi] gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi] gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31] gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a] gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7] gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a] gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b] gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23] gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a] gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a] gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a] gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1] gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26] gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40] Length = 113 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +AKGE+ Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVV 94 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ EI+ + Sbjct: 95 VIDE---NFGVRITEIIKTK 111 >gi|32490801|ref|NP_871055.1| hypothetical protein WGLp052 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166007|dbj|BAC24198.1| fliN [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 135 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 76/122 (62%), Gaps = 5/122 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 +++ +V N+ E+ K + + I E SS N +K +++ +LI++IP+KM I LG Sbjct: 11 IKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKN--KKLSEDINLILDIPIKMTIELGR 68 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M I +L+ L + ++TLD +GE +DI IN+ +A+GE+ +M+E +G+++++I+ Sbjct: 69 TKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKE---RYGIKILDIIT 125 Query: 146 AQ 147 + Sbjct: 126 PE 127 >gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582] gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582] Length = 138 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G Sbjct: 51 SLQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 110 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + FGVR+ +I+ Sbjct: 111 EVVVVAD---KFGVRITDIIT 128 >gi|329888111|ref|ZP_08266709.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] gi|328846667|gb|EGF96229.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] Length = 110 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 EKS + + ++PV + +LG M ++ L+ L+KG V+ LD++VGE++DI +NN+ +A Sbjct: 25 EKSAVDLAPVFDVPVNISAVLGKANMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLVA 84 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ ++E+ GV + EI+ + Sbjct: 85 RGEVVVVED---RLGVTMTEIIKTE 106 >gi|326403666|ref|YP_004283748.1| flagellar motor switch protein FliN [Acidiphilium multivorum AIU301] gi|325050528|dbj|BAJ80866.1| flagellar motor switch protein FliN [Acidiphilium multivorum AIU301] Length = 106 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 ++ + + + + ++PV + +LG MQ+S L+ L +G V+ LD++ G+ +DI +NN+ IA Sbjct: 21 QRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIA 80 Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146 +GE+ ++ D+T G+ + EI+ + Sbjct: 81 RGEVVML--DETKLGITMTEIVKS 102 >gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a] gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805] gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805] gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1] Length = 113 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +AKGE+ Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVV 94 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ EI+ + Sbjct: 95 VIDE---NFGVRITEIIKTK 111 >gi|292489154|ref|YP_003532041.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|292900272|ref|YP_003539641.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291200120|emb|CBJ47246.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291554588|emb|CBA22222.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] Length = 124 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE Sbjct: 38 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 97 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + ++ + FG+R+ +I+ Sbjct: 98 VVVVSD---KFGIRITDIIT 114 >gi|75674794|ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255] gi|74419664|gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter winogradskyi Nb-255] Length = 116 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + + + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+ Sbjct: 34 RVASDLEAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVAR 93 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ ++E+ GV + EI+ A+ Sbjct: 94 GEVVLVED---KLGVTMTEIIKAE 114 >gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides ATCC 15264] gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides ATCC 15264] Length = 109 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 +KS + + ++PV + +LG M ++ L+ L++G V+ LD++VGE++DI +NN+ +A Sbjct: 24 DKSAADLATVFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNNRLVA 83 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ ++E+ GV + EI+ + Sbjct: 84 RGEVVVVED---RLGVTMTEIIKTE 105 >gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146] gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella ictaluri 93-146] Length = 137 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLIM+IPVK+ + LG M I L+ LS+G V+ LD GE +D+ IN IA+G Sbjct: 50 SGQDIDLIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQG 109 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + FGVR+ +I+ Sbjct: 110 EVVVVND---KFGVRITDIIT 127 >gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] Length = 116 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 KS + + + ++PV + +LG+ M + +L+ L G V+ LD++VGE++DI +NN+ +A+ Sbjct: 35 KSAADLEQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNNRLVAR 94 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ ++EE GV + EI+ + Sbjct: 95 GEVVLVEE---RLGVTMTEIVKS 114 >gi|85713558|ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85699462|gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 116 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 54/84 (64%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + + + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+ Sbjct: 34 RVASDLEAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVAR 93 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ ++E+ GV + EI+ A+ Sbjct: 94 GEVVLVED---KLGVTMTEIIKAE 114 >gi|167464155|ref|ZP_02329244.1| flagellar motor switch protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382381|ref|ZP_08056288.1| flagellar motor switching and energizing phosphatase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153734|gb|EFX46109.1| flagellar motor switching and energizing phosphatase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 415 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 55/78 (70%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+++IP+K+ + LG I +++ L +G ++ LDK GE VDI +NN+ IAKGE+ Sbjct: 332 NLNLLLDIPLKVTVELGRTNKMIKDILELQQGSIVELDKLAGEPVDILVNNKLIAKGEVV 391 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E+ FGVRV +I++ Sbjct: 392 VIDEN---FGVRVTDIVS 406 >gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 127 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +LI++IPVKM + LG M I L+ LS+G V++LD GE +DI IN IA+GE Sbjct: 41 SDEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGE 100 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + ++ + FG+R+ +I+ Sbjct: 101 VVVVSD---KFGIRITDIIT 117 >gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM 4541] gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM 4541] Length = 138 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 4/88 (4%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D N L + +D DLIM+IPV++ + LG M I L++LS+G V++LD GE +DI I Sbjct: 44 DGQNPLNQFSD-VDLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILI 102 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEIL 144 N IA+GE+ ++ + ++G+R+ +I+ Sbjct: 103 NGYLIAQGEVVVVSD---NYGIRITDII 127 >gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018] Length = 395 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+++ ++LG I +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 311 NIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVV 370 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I+N++ Sbjct: 371 VVDE---NFGVRITSIVNSE 387 >gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC 824] gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain [Clostridium acetobutylicum ATCC 824] Length = 413 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 55/80 (68%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+++ ++LG I +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 329 NIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVV 388 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I+N++ Sbjct: 389 VVDE---NFGVRITSIVNSE 405 >gi|91978306|ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5] gi|91684762|gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5] Length = 116 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 64/106 (60%), Gaps = 7/106 (6%) Query: 46 DVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 D+++ P+ +D E+ T + + + ++PV++ +LG M + L+ L G V Sbjct: 12 DLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAV 71 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+ Sbjct: 72 LELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114 >gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM 12168] gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM 12168] Length = 396 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++ ++M + LG QI ++ + +G +I LDK GE VDI +N++ IAKGE+ Sbjct: 315 NIGLIMDVYMEMTVELGRTKKQIKEILGMGEGTIIELDKLAGEPVDILVNHKPIAKGEVV 374 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E+ FGVRV EIL+ Sbjct: 375 VIDEN---FGVRVTEILS 389 >gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus nematophila ATCC 19061] gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus nematophila ATCC 19061] Length = 135 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 51 DIDLIMDIPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 110 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +G+R+ +I+ Sbjct: 111 VVSD---KYGIRITDIIT 125 >gi|92116306|ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14] gi|91799200|gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14] Length = 116 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVV 97 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E+ GV + EI+ A+ Sbjct: 98 LVED---KLGVTMTEIIKAE 114 >gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] Length = 110 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 56/84 (66%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ + + + ++PV + +LGS M I +L+ L+ G V+ LD++VGE++D+ +NN+ +A+ Sbjct: 30 KTAADLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVAR 89 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ ++E+ GV + EI+ + Sbjct: 90 GEVVLVED---RLGVTMTEIVKGE 110 >gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827] gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827] Length = 138 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 8/126 (6%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKSTDNFDLIMNIPVK 78 ++P TN S +E L Q+ ++ S + D N L + +D +LIM+IPV+ Sbjct: 6 NSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSD-INLIMDIPVR 64 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+ Sbjct: 65 LSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGI 121 Query: 139 RVIEIL 144 R+ +I+ Sbjct: 122 RITDII 127 >gi|83747641|ref|ZP_00944677.1| FliN [Ralstonia solanacearum UW551] gi|207739722|ref|YP_002258115.1| flagellar motor switch protein flin [Ralstonia solanacearum IPO1609] gi|83725693|gb|EAP72835.1| FliN [Ralstonia solanacearum UW551] gi|206593104|emb|CAQ60010.1| flagellar motor switch protein flin [Ralstonia solanacearum IPO1609] Length = 154 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 47 DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 144 >gi|315497631|ref|YP_004086435.1| flagellar motor switch protein flin [Asticcacaulis excentricus CB 48] gi|315415643|gb|ADU12284.1| flagellar motor switch protein FliN [Asticcacaulis excentricus CB 48] Length = 110 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 55/84 (65%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ + + ++PV + +LG M +S L+ L +G V+ LD++VGE++DI +NN+ +A+ Sbjct: 26 KAAADLAPVFDVPVNISAVLGKAYMSVSQLLKLGQGSVLELDRKVGEAIDIYVNNRLVAR 85 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ +++E GV + EI+ ++ Sbjct: 86 GEVVVVDE---RLGVTMTEIIKSE 106 >gi|207728360|ref|YP_002256754.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2] gi|206591606|emb|CAQ57218.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2] Length = 154 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 47 DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 144 >gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7] gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7] Length = 188 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 58/87 (66%), Gaps = 4/87 (4%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 ++N +E ++D D+IM+IPV++ + LG + I N++ L +G V+ LD GE +DI +N Sbjct: 93 ADNAIENNSD-IDMIMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVN 151 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144 IA+GE+ +++E +G+RV +I+ Sbjct: 152 GYLIAQGEVVVVDE---KYGIRVTDII 175 >gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70] gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. WCH70] Length = 401 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 54/78 (69%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N L++++P+++ + LG + +++LS G +I LDK GE VDI +NN+ IAKGE+ Sbjct: 318 NLSLLLDVPLQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVV 377 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV +I++ Sbjct: 378 VIDE---NFGVRVTDIIS 392 >gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. G11MC16] gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. G11MC16] Length = 394 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 9/108 (8%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 +E IQ D +P + N +L+ ++P+++ + LG + ++ LS Sbjct: 287 AERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLS 340 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 G +I LDK GE VDI +NN+ IAKGE+ +++E+ FGVR+ +I++ Sbjct: 341 AGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDEN---FGVRITDIVS 385 >gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] Length = 360 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 3/82 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + T N L+M++ + M + LG M I +++ L +G +I L K GE VD+ +N + IAK Sbjct: 272 QGTGNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAK 331 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ +++E +FGVRV +I+N Sbjct: 332 GEVVVIDE---NFGVRVTDIIN 350 >gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] Length = 393 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 9/108 (8%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 +E IQ D +P + N +L+ ++P+++ + LG + ++ LS Sbjct: 286 AERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLS 339 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 G +I LDK GE VDI +NN+ IAKGE+ +++E+ FGVR+ +I++ Sbjct: 340 AGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDEN---FGVRITDIVS 384 >gi|313905142|ref|ZP_07838511.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Eubacterium cellulosolvens 6] gi|313470045|gb|EFR65378.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Eubacterium cellulosolvens 6] Length = 578 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 66/110 (60%), Gaps = 3/110 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 N + Q N + ++ P +D + E+ DN +++M +P+++ + +G I +++ Sbjct: 464 NQARAAKQNNTIRSLKSPQYTDVPDGGEEVDDNREMLMKVPMEISVEVGRTRKPIKDILE 523 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L++G ++ LDK GE D+ +N + IA G+I ++E+ +FG+R+ EILN Sbjct: 524 LTQGSLVVLDKMAGEQADLYVNGECIAHGDIVVVED---NFGIRITEILN 570 >gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus cellulosilyticus DSM 2522] gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus cellulosilyticus DSM 2522] Length = 398 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 55/78 (70%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D++++IP+++ + LG I +++ L++G +I LDK GE VDI +N + IAKGE+ Sbjct: 316 NLDMLLDIPLEVTVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIAKGEVV 375 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV +I++ Sbjct: 376 VIDE---NFGVRVTDIVS 390 >gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM 30120] gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM 30120] Length = 138 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 8/111 (7%) Query: 38 SEMLIQKNDVDNISEPI----SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 +E L Q+ ++ S + S D N L + +D D+IM+IPV++ + LG M I L Sbjct: 21 AEALEQQKQAESASAGMQNFDSLDGQNPLTQLSD-VDMIMDIPVRLSVELGRTKMTIKKL 79 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 ++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+R+ +I+ Sbjct: 80 LSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIRITDII 127 >gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8] Length = 154 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E +D +L+++IP+K+ + LG M + ++ + G +I LDK GE VDI +N + IA Sbjct: 65 EVPSDKLELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 124 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ ++ D +FGVR+ EI++ + Sbjct: 125 RGEVVVI---DENFGVRITEIVSPK 146 >gi|119953076|ref|YP_945285.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135] gi|119861847|gb|AAX17615.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135] Length = 114 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 56/80 (70%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + IAKGE+ Sbjct: 36 NFGLLMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVIAKGEVV 95 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ EI+ + Sbjct: 96 VIDE---NFGVRITEIIKIK 112 >gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1] gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1] Length = 113 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 56/80 (70%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +A+GE+ Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVV 94 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ EI+ + Sbjct: 95 VIDE---NFGVRITEIIKTK 111 >gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM 12563] gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM 12563] Length = 359 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 3/82 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + T N L+M++ + M + LG M I +++ L +G +I L K GE VD+ +N + IAK Sbjct: 271 QGTGNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAK 330 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ +++E +FGVRV +I+N Sbjct: 331 GEVVVIDE---NFGVRVTDIIN 349 >gi|94264048|ref|ZP_01287848.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] gi|94266366|ref|ZP_01290065.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] gi|93453018|gb|EAT03506.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] gi|93455559|gb|EAT05746.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] Length = 136 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N D ++++P+++ + LG M I+ L+ L++G V+ LDK G SV+I +N + + KGE Sbjct: 51 TQNLDFLLDVPLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGE 110 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + ++ E FG+RV EI++ Sbjct: 111 VVVVNE---RFGIRVTEIIS 127 >gi|312173312|emb|CBX81567.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC BAA-2158] Length = 93 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE Sbjct: 7 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 66 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + ++ + FG+R+ +I+ Sbjct: 67 VVVVSDK---FGIRITDIIT 83 >gi|300696947|ref|YP_003747608.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum CFBP2957] gi|299073671|emb|CBJ53191.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum CFBP2957] Length = 163 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 56 DDIHSVFKPLVIDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 115 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 116 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 153 >gi|86748400|ref|YP_484896.1| flagellar motor switch protein [Rhodopseudomonas palustris HaA2] gi|86571428|gb|ABD05985.1| Flagellar motor switch FliN [Rhodopseudomonas palustris HaA2] Length = 116 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVV 97 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E+ GV + EI+ A+ Sbjct: 98 LVED---KLGVTMTEIIKAE 114 >gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus thermoglucosidasius C56-YS93] Length = 395 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N L++++P+++ + LG + ++ LS G +I LDK GE VDI +NN+ IAKGE+ Sbjct: 312 NLSLLLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVV 371 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV +I++ Sbjct: 372 VIDE---NFGVRVTDIIS 386 >gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr] gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04] gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr] gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04] Length = 113 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 56/80 (70%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +A+GE+ Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVV 94 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ EI+ + Sbjct: 95 VIDE---NFGVRITEIIKTK 111 >gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91] gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91] Length = 157 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 57/86 (66%), Gaps = 3/86 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 NN+L + ++ D+I++IPV++ + LG + I NL+ L++G VI LD GE +D+ +N Sbjct: 64 NNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPMDVLVNG 123 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEIL 144 IA+GE+ ++ E FG+R+ +I+ Sbjct: 124 CLIAQGEVVVVNE---KFGIRLTDII 146 >gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004] gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus bovienii SS-2004] Length = 135 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ Sbjct: 51 DIDLIMDIPVKLSVELGRTKMTIKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVV 110 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +G+R+ +I+ Sbjct: 111 VVSD---KYGIRITDIIT 125 >gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116] gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S] gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116] gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S] Length = 113 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 56/80 (70%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +A+GE+ Sbjct: 35 NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVV 94 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ EI+ + Sbjct: 95 VIDE---NFGVRITEIIKTK 111 >gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y4.1MC1] gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y4.1MC1] Length = 395 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N L++++P+++ + LG + ++ LS G +I LDK GE VDI +NN+ IAKGE+ Sbjct: 312 NLSLLLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVV 371 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E+ FGVRV +I++ Sbjct: 372 VIDEN---FGVRVTDIIS 386 >gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137 str. F0430] gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137 str. F0430] Length = 399 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI+++P+++ + LG I ++++L+KG ++ LDK GE VDI +N + +AKGE+ Sbjct: 316 NIGLILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 375 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ EI++ Sbjct: 376 VIDE---NFGVRITEIVS 390 >gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 381 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 55/79 (69%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +LI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + IAKGE+ Sbjct: 297 ENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEV 356 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E+ FGVR+I+I++ Sbjct: 357 VVIDEN---FGVRIIDIVH 372 >gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1] gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4] gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1] gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4] Length = 115 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 54/81 (66%), Gaps = 3/81 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ + + + ++PV + +LGS M I +L+ L G V+ LD++VGE++DI +NN+ +A+ Sbjct: 34 KNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVAR 93 Query: 124 GEITIMEEDDTHFGVRVIEIL 144 GE+ ++EE GV + EI+ Sbjct: 94 GEVVLVEE---RLGVTMTEII 111 >gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP] Length = 366 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 22/161 (13%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQD-TNVSSPTNN-------------SEMLIQKND 46 +KK+ ++ + +E + P D T+ S PT+ + +Q D Sbjct: 207 FVKKLYELIFGTPTVEQKQASAPAPGTDQTSASKPTSFVPPTPKREEKQAVAARPVQFED 266 Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 +P S+ IL+ + L+ ++P+ + + LG + + ++ L G +I LDK Sbjct: 267 FGRTQQP--SEKPQILD---ERLQLLFDVPLNVTVELGRTKLALKEIMELGVGSLIELDK 321 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 GE VDI +NN+ IA+GE+ +++E +FGVR+ EI+N + Sbjct: 322 LTGEPVDIYVNNKLIARGEVVVIDE---NFGVRITEIVNPK 359 >gi|197104325|ref|YP_002129702.1| flagellar motor switch protein FliN [Phenylobacterium zucineum HLK1] gi|196477745|gb|ACG77273.1| flagellar motor switch protein FliN [Phenylobacterium zucineum HLK1] Length = 111 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 +K+ + + ++PV + +LG + ++ L+ L++G V+ LD++VGE++DI +NN+ +A Sbjct: 26 DKTAGDLAPVFDVPVSISAVLGRSTLSVAQLLQLAQGSVLELDRKVGEAIDIYVNNRLVA 85 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE+ I++E GV + EI+ Sbjct: 86 RGEVVIVDE---RLGVTMTEIIK 105 >gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 397 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI+++P+++ + LG I +++L+KG ++ LDK GE+VDI +N + +AKGE+ Sbjct: 314 NIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGETVDIMVNGKYLAKGEVV 373 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ EI++ Sbjct: 374 VIDE---NFGVRITEIVS 388 >gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103] gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103] gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355] Length = 137 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLIM+IPVK+ + LG M I L+ L++G V++LD GE +DI IN IA+G Sbjct: 50 SLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQG 109 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + +GVR+ +I+ Sbjct: 110 EVVVVND---KYGVRITDIIT 127 >gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b] gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b] Length = 136 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+G Sbjct: 49 SLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 108 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + +GVR+ +I+ Sbjct: 109 EVVVVND---KYGVRITDIIT 126 >gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9] gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter italicus Ab9] Length = 375 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 55/79 (69%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +LI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + IAKGE+ Sbjct: 291 ENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEV 350 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E +FGVR+I+I++ Sbjct: 351 VVIDE---NFGVRIIDIVH 366 >gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC 43541] gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC 43541] Length = 393 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI+++P+++ + LG I ++++L+KG ++ LDK GE VDI +N + +AKGE+ Sbjct: 310 NIGLILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 369 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ EI++ Sbjct: 370 VIDE---NFGVRITEIVS 384 >gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399] gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399] Length = 395 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI+++P+++ + LG I ++++L+KG ++ LDK GE VDI +N + +AKGE+ Sbjct: 312 NIGLILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 371 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ EI++ Sbjct: 372 VIDE---NFGVRITEIVS 386 >gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC BAA-2158] Length = 133 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 12/108 (11%) Query: 47 VDNISEPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 D ++E S S + + KS D + D+IM+IPVK+ + LG M I L+ LS Sbjct: 19 ADAMNEQAKSPSGDGVFKSLDGGEHAAGLQDIDMIMDIPVKLTVELGRTKMTIKELLRLS 78 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 79 QGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIIT 123 >gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. enterocolitica 8081] gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica W22703] Length = 138 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 54 DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 114 VVAD---KYGVRITDIIT 128 >gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3] gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. C56-T3] Length = 393 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D+ + N +L+ ++P+++ + LG + ++ LS G +I LDK GE VD+ + Sbjct: 299 DAPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFV 358 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 NN+ IAKGE+ +++E +FGVR+ +I++ Sbjct: 359 NNKLIAKGEVVVIDE---NFGVRITDIIS 384 >gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F] gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F] Length = 138 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 54 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + +GVR+ +I+ + Sbjct: 114 VVAD---KYGVRITDIITS 129 >gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10] gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar Microtus str. 91001] gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua] gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125] gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1] gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92] gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A] gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. India 195] gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10] gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar Microtus str. 91001] gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua] gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92] gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125] gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. India 195] gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A] gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004] gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038] gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 138 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 54 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + +GVR+ +I+ + Sbjct: 114 VVAD---KYGVRITDIITS 129 >gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591] gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591] Length = 138 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA Sbjct: 49 QGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIA 108 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE+ ++ + +GVR+ +I+ Sbjct: 109 QGEVVVVSD---KYGVRITDIIT 128 >gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61] gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC52] gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC61] gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC52] Length = 393 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D+ + N +L+ ++P+++ + LG + ++ LS G +I LDK GE VD+ + Sbjct: 299 DAPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFV 358 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 NN+ IAKGE+ +++E +FGVR+ +I++ Sbjct: 359 NNKLIAKGEVVVIDE---NFGVRITDIIS 384 >gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] Length = 393 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D+ + N +L+ ++P+++ + LG + ++ LS G +I LDK GE VD+ + Sbjct: 299 DAPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFV 358 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 NN+ IAKGE+ +++E +FGVR+ +I++ Sbjct: 359 NNKLIAKGEVVVIDE---NFGVRITDIIS 384 >gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319] gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319] Length = 385 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D++++IP+++ + LG + ++ LS G +I LDK GE VDI IN++ IAKGE+ Sbjct: 302 NLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKLIAKGEVV 361 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E+ FGVRV +I++ Sbjct: 362 VIDEN---FGVRVTDIIS 376 >gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551] gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551] Length = 385 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D++++IP+++ + LG + ++ LS G +I LDK GE VDI IN++ IAKGE+ Sbjct: 302 NLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKLIAKGEVV 361 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV +I++ Sbjct: 362 VIDE---NFGVRVTDIIS 376 >gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] Length = 133 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + D+IM+IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G Sbjct: 46 SLQDIDMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 105 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+ ++ + +GVR+ +I+ Sbjct: 106 EVVVVAD---KYGVRITDII 122 >gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ] gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ] Length = 155 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 6/102 (5%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 +N N+ +P+ + + + D+IM+IPVK+ + LG + I L+ L++G V+ Sbjct: 50 QNAGQNVFKPLGKSATA---EGMRDLDMIMDIPVKLSVELGRTRITIKQLLELAQGSVVE 106 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 LD GE +DI IN IA+GE+ ++ D +G+R+ EI+ Sbjct: 107 LDGLAGEPMDILINGYLIAQGEVVVV---DDKYGIRITEIIT 145 >gi|300693351|ref|YP_003749324.1| flagellar motor switching and energizing component. flin/mopa/spao family [Ralstonia solanacearum PSI07] gi|299075388|emb|CBJ34683.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum PSI07] Length = 169 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 63/101 (62%), Gaps = 4/101 (3%) Query: 45 NDVDNISEP-ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 ND++++ +P + DS ++ D+I++IPV++ + LG + I NL+ L++G V+ Sbjct: 61 NDINSVFKPLVVDDSKKPSPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVE 120 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 LD GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 121 LDALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDII 158 >gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA] gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA] Length = 370 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 62/95 (65%), Gaps = 6/95 (6%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 EP+S ++ +S N DLI+++P+++ ++LG I ++++LS G +I LDK E Sbjct: 274 EPLS---QGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEP 330 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 V++ IN +KIA GE+ +++E +FGVR+ I++ Sbjct: 331 VEVLINGKKIAYGEVVVVDE---NFGVRITSIVSG 362 >gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937] gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937] Length = 138 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA Sbjct: 49 QGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIA 108 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE+ ++ + +GVR+ +I+ Sbjct: 109 QGEVVVVSD---KYGVRITDIIT 128 >gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum SL003B-26A1] gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum SL003B-26A1] Length = 112 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 56/81 (69%), Gaps = 3/81 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +S + + + ++PV++ +LG M +S+L+ L+ G V+ LD++VGE++DI +N++ +A+ Sbjct: 31 QSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLAAGTVLELDRKVGEAIDIYVNDRLVAR 90 Query: 124 GEITIMEEDDTHFGVRVIEIL 144 GE+ ++E+ GV + EI+ Sbjct: 91 GEVVLVED---KLGVTMTEII 108 >gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens subsp. laumondii TTO1] Length = 139 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 55 DIDLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 114 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +G+R+ +I+ Sbjct: 115 VVSD---KYGIRITDIIT 129 >gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio acidaminovorans DSM 6589] Length = 375 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S DLI +IPV++ + LG I ++N+S G V+ L++ GE VD+ +N + IA+G Sbjct: 288 SASAIDLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEPVDVLVNGKLIARG 347 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ +++E +FGVRV EI++ Sbjct: 348 EVVVIDE---NFGVRVTEIVS 365 >gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda] Length = 134 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +D+ IN IA+G Sbjct: 47 SGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQG 106 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + FGVR+ +I+ Sbjct: 107 EVVVVND---KFGVRITDIIT 124 >gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586] gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586] Length = 138 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA Sbjct: 49 QGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIA 108 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE+ ++ + +GVR+ +I+ Sbjct: 109 QGEVVVVSD---KYGVRITDIIT 128 >gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC 35405] gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola] gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC 35405] Length = 393 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 ++ N LIM++ ++M + LG I ++ + +G +I LDK GE VD+ +N++ IA Sbjct: 306 QEEQGNIGLIMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIA 365 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 KGE+ ++EE FGVR+ EIL+ Sbjct: 366 KGEVVVIEES---FGVRITEILS 385 >gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402] Length = 393 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 ++ N LIM++ ++M + LG I ++ + +G +I LDK GE VD+ +N++ IA Sbjct: 306 QEEQGNIGLIMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIA 365 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 KGE+ ++EE FGVR+ EIL+ Sbjct: 366 KGEVVVIEES---FGVRITEILS 385 >gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703] gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703] Length = 136 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+G Sbjct: 49 TAQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQG 108 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + +GVR+ +I+ Sbjct: 109 EVVVVAD---KYGVRITDIIT 126 >gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 32953] gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 32953] gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] Length = 138 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 54 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 113 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 114 VVAD---KYGVRITDIIT 128 >gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617] Length = 133 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 12/108 (11%) Query: 47 VDNISEPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 D +SE S S + + KS + + D+IM+IPVK+ + LG M I L+ LS Sbjct: 19 ADAMSEQTQSPSGDGVFKSLNGGEHSAGLQDIDMIMDIPVKLTVELGRTKMTIKELLRLS 78 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 79 QGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIIT 123 >gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16] gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16] Length = 395 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 58/83 (69%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E N D++++IP+++++ LG I ++++++G +I LDK GE VD+ IN++ IA Sbjct: 307 EAEMQNLDMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLAGEPVDVLINDKLIA 366 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 KGE+ +++E +FGVR+ +I++ Sbjct: 367 KGEVVVIDE---NFGVRITDIVS 386 >gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 137 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetohalobium arabaticum DSM 5501] gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetohalobium arabaticum DSM 5501] Length = 408 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E+ DLI ++P+++ + LG M I +++ L G VI LDK GESVD+ +N + IA Sbjct: 321 EQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELGNGSVIELDKLAGESVDLLVNGKLIA 380 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 KGE+ +++E +FG RV +I++ Sbjct: 381 KGEVVVIDE---NFGFRVTDIVS 400 >gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661] gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661] Length = 133 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S +SN+I S + DLIM+IPVK+ + LG M I L+ L++G V++L+ GE +DI Sbjct: 37 SLESNDI-TGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLEGLAGEPLDI 95 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 96 LINGYLIAQGEVVVVAD---KYGVRITDIIT 123 >gi|296535009|ref|ZP_06897289.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] gi|296264664|gb|EFH11009.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] Length = 93 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 2/75 (2%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 IM+IPV +Q++LG+ + ++ L NLS+G VI DK+VGE +D+ N + IA+GEI I Sbjct: 19 IMDIPVNVQVVLGNKRLPMAALFNLSRGSVIEFDKKVGEPIDLMANERLIARGEIQIT-- 76 Query: 132 DDTHFGVRVIEILNA 146 DD + + EI+++ Sbjct: 77 DDGRLSISITEIVSS 91 >gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638] gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638] Length = 137 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168] gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168] Length = 137 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli] gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str. 493-89] gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str. H 2687] Length = 137 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2] gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2] Length = 137 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein [Edwardsiella tarda EIB202] gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein [Edwardsiella tarda EIB202] gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60] Length = 137 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +D+ IN IA+G Sbjct: 50 SGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQG 109 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+ ++ + FGVR+ +I+ Sbjct: 110 EVVVVND---KFGVRITDII 126 >gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 137 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC 43531] gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC 43531] Length = 396 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 54/78 (69%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI+++P+++ + LG I +++L+KG ++ LDK GE VDI +N + +AKGE+ Sbjct: 313 NIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVV 372 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ EI++ Sbjct: 373 VIDE---NFGVRITEIVS 387 >gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1] gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1] Length = 136 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V++LD GE +DI IN IA+GE+ Sbjct: 52 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVV 111 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 112 VVAD---KYGVRITDIIT 126 >gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 137 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804] gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii] Length = 181 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ Sbjct: 95 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 154 Query: 128 IMEEDDTHFGVRVIEIL 144 ++EE +G+R+ +I+ Sbjct: 155 VVEE---KYGIRLTDII 168 >gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003] gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003] Length = 124 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 40 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 99 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + +GVR+ +I+ + Sbjct: 100 VVAD---KYGVRITDIITS 115 >gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] Length = 137 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC 35316] gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC 35316] Length = 137 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica Y11] gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 124 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 40 DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 99 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 100 VVAD---KYGVRITDIIT 114 >gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC 35469] gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia fergusonii ATCC 35469] gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253] gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227] Length = 137 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|39934342|ref|NP_946618.1| flagellar motor switch protein [Rhodopseudomonas palustris CGA009] gi|192289870|ref|YP_001990475.1| flagellar motor switch protein [Rhodopseudomonas palustris TIE-1] gi|316935485|ref|YP_004110467.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris DX-1] gi|39648190|emb|CAE26710.1| putative flagellar motor switch protein [Rhodopseudomonas palustris CGA009] gi|192283619|gb|ACE99999.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris TIE-1] gi|315603199|gb|ADU45734.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris DX-1] Length = 115 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVV 97 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++E+ GV + EI+ A Sbjct: 98 LVED---KLGVTMTEIIKA 113 >gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863] gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509] gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v] Length = 137 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|254294568|ref|YP_003060591.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814] gi|254043099|gb|ACT59894.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814] Length = 115 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 62/97 (63%), Gaps = 4/97 (4%) Query: 50 ISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 +++PIS++ K + + ++PV +Q ++G M++S L++L +G V+ LD+RV Sbjct: 18 LAKPISAEEEAERREKFAADLAPMFDVPVSVQAVIGRTTMEVSELMHLGEGSVLELDRRV 77 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE++DI +N++ +A+GEI ++ D GV + EI+ Sbjct: 78 GEAIDIYVNSRLVARGEIVVV---DDRLGVTMTEIIK 111 >gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185] gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185] Length = 137 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 EDL933] gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Sakai] gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS] gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4113] gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4401] gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4501] gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4486] gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4196] gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4076] gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869] gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508] gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94] gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A] gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22] gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019] gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171] gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1] gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4024] gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4206] gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4045] gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4042] gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4115] gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11] gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14588] gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1] gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a] gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989] gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14359] gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B] gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN [Escherichia coli O103:H2 str. 12009] gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN [Escherichia coli O26:H11 str. 11368] gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN [Escherichia coli O111:H- str. 11128] gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. FRIK2000] gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN [Escherichia coli O157:H7 str. FRIK966] gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str. CB9615] gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088] gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7] gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1] gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1] gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1] gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1] gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1] gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1] gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1] gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1] gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1] gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W] gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7] gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143] gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271] gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280] gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591] gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299] gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction [Escherichia coli O157:H7 str. EDL933] gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Sakai] gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS] gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94] gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4196] gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4113] gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4076] gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4401] gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4486] gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4501] gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869] gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508] gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A] gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22] gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019] gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171] gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1] gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4206] gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4045] gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4042] gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4115] gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli] gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11] gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14588] gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia coli 55989] gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia coli IAI1] gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia coli ED1a] gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. TW14359] gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN [Escherichia coli O26:H11 str. 11368] gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN [Escherichia coli O103:H2 str. 12009] gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN [Escherichia coli O111:H- str. 11128] gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042] gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str. CB9615] gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088] gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1] gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1] gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1] gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1] gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1] gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1] gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1] gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7] gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1] gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1] gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W] gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7] gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407] gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia coli W] gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1] gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC 74-1112] gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC1212] gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B] gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. G5101] gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str. USDA 5905] gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. LSU-61] gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14] gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010] gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68] gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11] gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520] gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482] gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120] gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489] gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007] gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3] gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167] gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. 1044] gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. 1125] gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143] gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271] gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280] gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591] gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299] gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82] gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88] Length = 137 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi] gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G] gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180] gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357] Length = 134 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 110 VVAD---KYGVRITDIIT 124 >gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] Length = 124 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 40 DIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 99 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 100 VVAD---KYGVRITDIIT 114 >gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012] gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC BAA-895] gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1] gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1] Length = 401 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 17/128 (13%) Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 +S H N + NV P +Q N +P S + + N D++++IP+ Sbjct: 282 QSQHFGN---NKNVEQPVQ-----VQPASFTNFEQPSMS------KPESKNLDMLLDIPL 327 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 + + LG + +++ LS G +I LDK GE VD+ +N++ IAKGE+ +++E +FG Sbjct: 328 NVTVELGRTNRSVKDILELSSGSIIELDKLAGEPVDVLVNSRLIAKGEVVVIDE---NFG 384 Query: 138 VRVIEILN 145 VR+ +I++ Sbjct: 385 VRITDIVS 392 >gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718] gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10] gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga naphthophila RKU-10] Length = 346 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E +D +L+++IP+++ + LG M + ++ + G +I LDK GE VDI +N + IA Sbjct: 257 EVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 316 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ +++E +FGVR+ EI++ + Sbjct: 317 RGEVVVIDE---NFGVRITEIVSPK 338 >gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227] gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301] gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 2457T] gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401] gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301] gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 2457T] gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401] gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017] gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str. 2457T] gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71] gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671] gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218] gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272] gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304] gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 134 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 110 VVAD---KYGVRITDIIT 124 >gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. W3110] gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli] gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia coli str. K12 substr. W3110] gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1] gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|327193026|gb|EGE59938.1| flagellar motor switch protein FliN [Rhizobium etli CNPAF512] Length = 56 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 45/54 (83%) Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ + Sbjct: 1 MNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 54 >gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1] gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739] gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDII 126 >gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A] gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5] gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A] gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDII 126 >gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70] gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71] Length = 134 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 110 VVAD---KYGVRITDIIT 124 >gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74] Length = 134 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 110 VVAD---KYGVRITDIIT 124 >gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74] Length = 134 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 110 VVAD---KYGVRITDIIT 124 >gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605] gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206] gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15] gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86] gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605] gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 134 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 110 VVAD---KYGVRITDIIT 124 >gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073] gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972] gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1] gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1] gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073] gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972] gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1] gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1] gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972] gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70] gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70] Length = 134 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 50 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 109 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 110 VVAD---KYGVRITDIIT 124 >gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 127 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 3/79 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 ++ +LI++IPVKM + LG M I L+ LS+G V++LD GE +DI IN IA+GE Sbjct: 41 SEEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGE 100 Query: 126 ITIMEEDDTHFGVRVIEIL 144 + ++ + FG+R+ +I+ Sbjct: 101 VVVVSD---KFGIRITDII 116 >gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89] gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1] gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88] gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA] gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89] gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1] gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia coli S88] gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA] gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034] gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146] gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3] gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252] gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536] gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11] gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str. E2348/69] gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39] gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026] gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412] gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354] gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli FVEC1302] gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1] gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101] gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75] gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536] gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11] gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN [Escherichia coli O127:H6 str. E2348/69] gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia coli IAI39] gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia coli UMN026] gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82] gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412] gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354] gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli FVEC1302] gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1] gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101] gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75] gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str. NRG 857C] gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3] gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327] gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2] gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|203284198|ref|YP_002221938.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|203287737|ref|YP_002222752.1| flagellar motor switch protein [Borrelia recurrentis A1] gi|201083641|gb|ACH93232.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|201084957|gb|ACH94531.1| flagellar motor switch protein [Borrelia recurrentis A1] Length = 114 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +AKGE+ Sbjct: 36 NFGLLMDVSMQVTVELGRTERKIKDILAMSEGTIITLDKLAGEPVDILVNGKIVAKGEVV 95 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ EI+ + Sbjct: 96 VIDE---NFGVRITEIIKIK 112 >gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1] gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1] Length = 137 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 T N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA G Sbjct: 51 GTPNLDVILDIPVTLSMEVGSTNISIRNLLQLNQGSVIELDRLAGEPLDVMVNGTLIAHG 110 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R+ ++++ Q Sbjct: 111 EVVVVNE---KFGIRLTDVISPQ 130 >gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 422 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +LIM++P+++ + LG +I ++ L G +I LDK GE VDI +N + IAKGE+ Sbjct: 339 NIELIMDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVV 398 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ D +FG+R+ EI++ Sbjct: 399 VI---DENFGIRITEIIS 413 >gi|225569964|ref|ZP_03778989.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM 15053] gi|225161434|gb|EEG74053.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM 15053] Length = 460 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 3/102 (2%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +K V+ +S+P S E N +LIM +P+++ + +G + +++ L+KG ++ Sbjct: 354 KKIKVNPVSQPNLEQSAEETELQESNLELIMGVPLEVSVEIGRTKKLVKDVLELNKGSLV 413 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 LDK GE VD+ +N Q IA+G++ ++ D +FG+R+ EIL Sbjct: 414 VLDKLAGEQVDLFVNGQCIAQGDVVVV---DDNFGIRITEIL 452 >gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga sp. RQ2] gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga sp. RQ2] Length = 346 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E +D +L+++IP+++ + LG M + ++ + G +I LDK GE VDI +N + IA Sbjct: 257 EVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 316 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ +++E +FGVR+ EI++ + Sbjct: 317 RGEVVVIDE---NFGVRITEIVSPK 338 >gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C] gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C] Length = 97 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ST DL++++P+++ + LG M I +L+ L+ G VI LDK GE +DI +N + +A+G Sbjct: 11 STRRLDLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDILVNGRLVARG 70 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E ++ + FGVR+ +I++ Q Sbjct: 71 EAVVVND---KFGVRITDIVSPQ 90 >gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans Nor1] gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans Nor1] Length = 376 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N +LIM++P+++ + LG I ++ L G V+ LDK GE VDI +N + IAKG Sbjct: 290 SDTNINLIMDVPLQVTVELGRTRKLIREILELGPGSVVELDKLAGEPVDILVNGKLIAKG 349 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ +++E +FGVR+ EI++ Sbjct: 350 EVVVIDE---NFGVRITEIVS 367 >gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11] gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11] Length = 372 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 5/91 (5%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + +D + EK +N +LIM+IP+ + + LG I +++ L++G +I LDK GE VD Sbjct: 278 LDADEQTVSEK--ENINLIMDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLAGEPVD 335 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 I +N + IAKGE+ +++E +FGVR+++I+ Sbjct: 336 ILVNGKFIAKGEVVVIDE---NFGVRILDIV 363 >gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88] gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88] Length = 416 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 9/117 (7%) Query: 33 SPTNNSEM-LIQKNDVD---NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 SPT + E +Q+ ++ I +P+ S E+ N DLIM++P+ + ++LG + Sbjct: 294 SPTYHRETPRVQEKPIEVQEAIFQPLQQTSKG--EELPRNIDLIMDVPLDISVVLGRTKL 351 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I ++NL G +I LDK E V+I +N + +A GE+ +++E +FGVR+ +I+N Sbjct: 352 NIKEILNLGTGSLIELDKLAEEPVEILVNGKPVAFGEVVVIDE---NFGVRITDIVN 405 >gi|295690737|ref|YP_003594430.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756] gi|295432640|gb|ADG11812.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756] Length = 110 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 55/84 (65%), Gaps = 3/84 (3%) Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 I +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++DI +NN+ Sbjct: 24 IADKTASDLAPVFDVPVNISAVLGRAHMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRL 83 Query: 121 IAKGEITIMEEDDTHFGVRVIEIL 144 +A+GE+ +++E GV + EI+ Sbjct: 84 VARGEVVVVDE---RLGVTMTEII 104 >gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1] gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1] Length = 346 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E +D +L+++IP+++ + LG M + ++ + G +I LDK GE VDI +N + IA Sbjct: 257 EVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIA 316 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ +++E +FGVR+ EI++ + Sbjct: 317 RGEVVVIDE---NFGVRITEIVSPK 338 >gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM 4359] gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM 4359] Length = 344 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D +L++++P+K+ + LG M + ++ + G +I LDK GE VDI +N + IA+GE+ Sbjct: 259 DKLELLLDVPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEV 318 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 ++ D +FGVRV EI++ + Sbjct: 319 VVI---DENFGVRVTEIVSPK 336 >gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685] gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685] Length = 137 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +D+ IN IA+G Sbjct: 50 AGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDVLINGYLIAQG 109 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + FGVR+ +I+ Sbjct: 110 EVVVVND---KFGVRITDIIT 127 >gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602] gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602] Length = 138 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + D+I++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+G Sbjct: 51 SLQDIDMILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQG 110 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + +GVR+ +I+ Sbjct: 111 EVVVVAD---KYGVRITDIIT 128 >gi|238025699|ref|YP_002909930.1| flagellar motor switch protein FliN [Burkholderia glumae BGR1] gi|237874893|gb|ACR27226.1| Flagellar motor switch protein FliN [Burkholderia glumae BGR1] Length = 144 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 24/137 (17%) Query: 24 NPLQDTNVSSPTNNSEM------LIQKNDVDNISEPISSDSNNI-----LEKSTDN---- 68 NP + + P S + L ++ND +PI+S + L K+ N Sbjct: 5 NPTPEGKQAGPGEESSLDDWAAALAEQND-----QPIASGAGGAGVFQPLSKAASNATHN 59 Query: 69 -FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 D+I++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 60 DIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 119 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + FG+R+ +I+ Sbjct: 120 VVND---KFGIRLTDII 133 >gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kronotskyensis 2002] Length = 378 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 9/118 (7%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCC 87 + + P +E Q V N+S P+ +S + E + +N +LI+++P+++ + LG Sbjct: 263 SYTPPPQRTE---QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQ 318 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + ++ S G +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N Sbjct: 319 KLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 373 >gi|226313057|ref|YP_002772951.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC 100599] gi|226096005|dbj|BAH44447.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC 100599] Length = 455 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 54/78 (69%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+ +IP+++ + LG I +++LS G +I LDK GE VDI +NN+ IAKGE+ Sbjct: 372 NLNLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAKGEVV 431 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E+ FGVRV +I++ Sbjct: 432 VIDEN---FGVRVTDIIS 446 >gi|154252628|ref|YP_001413452.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans DS-1] gi|154156578|gb|ABS63795.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans DS-1] Length = 117 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ++ + + + ++PV + +LG +++SNL+ L +G ++ LD++VGE++DI +N++ +A+ Sbjct: 35 RTAQDLEAVFDVPVNVSAVLGKTHIEVSNLLKLGRGAIVELDRKVGEAIDIYVNDRLVAR 94 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ ++ D GV + EI+ Sbjct: 95 GEVVVV---DDRLGVTMTEIVKG 114 >gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli 95/1000] gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli 95/1000] Length = 348 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 3/82 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + T N L+M++ + M + LG M I +++ L +G +I L K GE VD+ +N + IAK Sbjct: 260 QGTGNIGLLMDVTMNMTVELGRATMTIKDILGLGEGSIIELQKLAGEPVDLLVNGKLIAK 319 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ +++E +FGVRV +I++ Sbjct: 320 GEVVVIDE---NFGVRVTDIIS 338 >gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421] gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421] Length = 377 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 13/104 (12%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 +Q + N+ P+ ++ NI LIM++ +++ + LG M I +++ + +G + Sbjct: 279 VQFQPLQNV--PVGTEQGNI--------GLIMDVYMEVTVELGRTRMIIKDILGMGEGHI 328 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I LDK GE VDI +N++ IAKGE+ +++E+ FGVRV EIL+ Sbjct: 329 IELDKLAGEPVDILVNHKPIAKGEVVVIDEN---FGVRVTEILS 369 >gi|90422463|ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18] gi|90104477|gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18] Length = 116 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + ++PV++ +LG M + L+ L G V+ LD++VGE++DI +NN+ +A+GE+ Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVV 97 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E+ GV + EI+ A+ Sbjct: 98 LVED---KLGVTMTEIIKAE 114 >gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905] Length = 137 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|254417867|ref|ZP_05031591.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3] gi|196184044|gb|EDX79020.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3] Length = 110 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 +K+ + + +PV + +LG M ++ L+ L+KG V+ LD++VGE++DI +NN+ IA Sbjct: 25 DKTAADLATVFEVPVNISAVLGKSHMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLIA 84 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ ++ D GV + EI+ + Sbjct: 85 RGEVVVV---DDRLGVTMTEIIKTE 106 >gi|42524696|ref|NP_970076.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus HD100] gi|39576906|emb|CAE78135.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus HD100] Length = 122 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI++IP+K+ + LG M +S L+NL++G VI L K GE +++ +N++ IA+GE Sbjct: 39 NLSLILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAV 98 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+ +I++ Sbjct: 99 VVNE---KFGVRLTDIIS 113 >gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum GMI1000] gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia solanacearum GMI1000] Length = 156 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 N + ++ +P+ ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 49 NPLSSVFKPLMPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 108 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 109 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 146 >gi|301165894|emb|CBW25467.1| flagellar motor switch protein FliN [Bacteriovorax marinus SJ] Length = 131 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 4/116 (3%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 N S+P N E I V +S+ I + + + + N D I++IP+K+ + LG + Sbjct: 11 NQSNPMANVED-INTARVSQLSDEIKAGDDALNKLKVQNLDFILDIPLKVTVELGRTEVM 69 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I +L+ L +G V+ LDK GE ++I +N + +AKGE+ ++ E FG+R+ +I++ Sbjct: 70 IKDLLQLGQGSVLELDKLAGEPLEILVNGKLVAKGEVVVVNE---KFGIRLTDIIS 122 >gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont] Length = 136 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+G Sbjct: 49 SLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQG 108 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + +GVR+ +I+ Sbjct: 109 EVVVVND---KYGVRITDIIT 126 >gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae WPP163] gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae WPP163] Length = 137 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVSD---KYGVRITDIMT 127 >gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str. Alaska E43] gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str. Alaska E43] gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 383 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+ + ++LG I +++NLS G +I LDK E V+I +N +KIA GE+ Sbjct: 300 NIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEVV 359 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ I++ Sbjct: 360 VVDE---NFGVRITSIVS 374 >gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT] gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain [Clostridium novyi NT] Length = 396 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 16/141 (11%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNN---SEMLIQKNDVDNISE-PISSDSNNILEKST 66 IK +L ID P + P N+ S++ +Q+ + + + PIS NI Sbjct: 260 IKSDLNKAPQQID-PKPAETYTQPQNSVPQSQVSVQRANFAPLDQNPISGVPQNI----- 313 Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 DLI+++P+++ ++LG I +++L G +I LDK E V+I +N +KIA GE+ Sbjct: 314 ---DLILDVPLEISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPVEIYVNGKKIAYGEV 370 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR++ I++ + Sbjct: 371 VVVDE---NFGVRIVSIVSGE 388 >gi|187478202|ref|YP_786226.1| flagellar motor switch protein [Bordetella avium 197N] gi|115422788|emb|CAJ49316.1| flagellar motor switch protein [Bordetella avium 197N] Length = 172 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DL+M++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ Sbjct: 86 DIDLVMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 145 Query: 128 IMEEDDTHFGVRVIEIL 144 ++EE +G+R+ +I+ Sbjct: 146 VVEE---KYGIRLTDII 159 >gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4] gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4] Length = 420 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + N ++++IP+++ + LG I ++ L +G +I LDK GE VDI +N + IAKGE Sbjct: 335 SKNLSMLLDIPLQVTVELGRTKRSIKEILELGQGSIIELDKLAGEPVDILVNQKLIAKGE 394 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + ++EE FGVRV +I++ + Sbjct: 395 VVVIEES---FGVRVTDIVSQE 413 >gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514] gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X561] gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein [Thermoanaerobacter sp. X513] gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514] gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X561] gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X513] Length = 375 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 54/79 (68%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +LI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + IAKGE+ Sbjct: 291 ENLELILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEV 350 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E+ FGVR+ +I++ Sbjct: 351 VVIDEN---FGVRITDIVH 366 >gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 370 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 63/99 (63%), Gaps = 11/99 (11%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + D+ EP +++ NI +LIM+IP+ + + LG I +++ L++G +I LD Sbjct: 274 EFDDEDEPTTAEKENI--------NLIMDIPLNVTVELGRTKKLIKDILELNEGSIIELD 325 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 K GE VDI +N + IAKGE+ +++E +FGVR+++I+ Sbjct: 326 KLAGEPVDILVNGKFIAKGEVVVIDE---NFGVRILDIV 361 >gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor lactoaceticus 6A] Length = 375 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%) Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G Sbjct: 270 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 328 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N Sbjct: 329 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 370 >gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund 17B] gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str. Eklund 17B] Length = 385 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+ + ++LG I +++NLS G +I LDK E V+I +N +KIA GE+ Sbjct: 302 NIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEVV 361 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ I++ Sbjct: 362 VVDE---NFGVRITSIVS 376 >gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 375 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%) Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G Sbjct: 270 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 328 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N Sbjct: 329 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 370 >gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor hydrothermalis 108] gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor hydrothermalis 108] Length = 376 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%) Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G Sbjct: 271 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 329 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N Sbjct: 330 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 371 >gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] Length = 115 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 54/81 (66%), Gaps = 3/81 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ + + + ++PV + +LGS M I +L+ L G V+ LD++VGE++DI +NN+ +A+ Sbjct: 34 KNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVAR 93 Query: 124 GEITIMEEDDTHFGVRVIEIL 144 GE+ +++E GV + EI+ Sbjct: 94 GEVVLVDE---RLGVTMTEII 111 >gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO] gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO] Length = 343 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +L++++P+K+ + LG M + ++ ++ G +I LDK GE VDI +N + IAKGE Sbjct: 253 SDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGE 312 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + +++E+ FGVR+ EI+ + Sbjct: 313 VVVVDEN---FGVRITEIVTPK 331 >gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM 6725] gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor bescii DSM 6725] Length = 378 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%) Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G Sbjct: 273 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 331 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N Sbjct: 332 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 373 >gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum SCRI1043] gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum SCRI1043] Length = 137 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVSD---KYGVRITDIIT 127 >gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae] Length = 139 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +E + ++IM+IPVK+ + LG M I L+NL++G V++LD GE +DI IN I Sbjct: 49 IENQFSDINMIMDIPVKLTVELGRTKMTIKKLLNLTQGSVVSLDGLAGEPLDILINGYLI 108 Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144 A+GE+ ++ + +G+R+ +I+ Sbjct: 109 AQGEVVVVSD---KYGIRITDII 128 >gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] gi|973195|gb|AAB00544.1| FliY [Treponema pallidum] gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 348 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 54/78 (69%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++ +++ + LG M I +++ + +G +I LDK GE VDI +N++ IAKGE+ Sbjct: 266 NIGLIMDVFMEVTVELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVV 325 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E+ FGVRV EIL+ Sbjct: 326 VIDEN---FGVRVTEILS 340 >gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 137 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 53 DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVSD---KYGVRITDIIT 127 >gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor obsidiansis OB47] gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor obsidiansis OB47] Length = 375 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 6/105 (5%) Query: 43 QKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 Q V N+S P+ +S + E + +N +LI+++P+++ + LG + ++ S G Sbjct: 270 QPQQVYNVS-PVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGS 328 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N Sbjct: 329 IIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVN 370 >gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein gi|71042011|pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein Length = 87 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +L+++IP+K+ + LG M + ++ + G +I LDK GE VDI +N + IA+GE Sbjct: 1 SDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGE 60 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + +++E+ FGVR+ EI++ + Sbjct: 61 VVVIDEN---FGVRITEIVSPK 79 >gi|299068764|emb|CBJ40004.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum CMR15] Length = 158 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 N + ++ +P+ ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 51 NALSSVFKPLLPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 110 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 111 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 148 >gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 377 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 3/82 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + +N +LI+++P+++ + LG + ++ S G +I LDK GE VDI +N + IAK Sbjct: 294 RYPENIELILDVPLEITVELGRTQKLVREILEFSTGSIIELDKLAGEPVDILVNGKVIAK 353 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ +++E FGVR+ +I+N Sbjct: 354 GEVVVIDE---SFGVRITDIVN 372 >gi|146342732|ref|YP_001207780.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278] gi|146195538|emb|CAL79565.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278] Length = 115 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 60/100 (60%), Gaps = 7/100 (7%) Query: 51 SEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + PI+ D+ E+ + + + ++PV++ +LG M + L+ L G V+ LD+ Sbjct: 16 APPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDR 75 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ + Sbjct: 76 KVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKS 112 >gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sibiricum 255-15] gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sibiricum 255-15] Length = 376 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E N ++ ++P+ + + LG + +++ L++G +I LDK GE VD+ +NN IA Sbjct: 289 EGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLIA 348 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 GE+ ++EE+ FGVR+ EI+N + Sbjct: 349 TGEVVVIEEN---FGVRITEIVNTK 370 >gi|27382113|ref|NP_773642.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] gi|27355283|dbj|BAC52267.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] Length = 116 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + ++PV++ +LG M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ Sbjct: 38 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRRVGEAIDIYVNNKLVARGEVV 97 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E+ GV + EI+ + Sbjct: 98 LVED---KLGVTMTEIIKTE 114 >gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653] gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653] Length = 366 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + N DLI+++P+ + + LG I +++ L++G +I LDK GE VDI N + IAKGE Sbjct: 281 SKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGE 340 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++E +FGVR+ +I++ Sbjct: 341 VVVIDE---NFGVRITDIVH 357 >gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K] gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans 2CP-1] gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K] gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans 2CP-1] Length = 97 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ST D+++++P+++ + LG M I +L+ L+ G VI LDK GE +DI +N + +A+G Sbjct: 11 STRRLDMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDILVNGRLVARG 70 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E ++ + FGVR+ +I++ Q Sbjct: 71 EAVVVND---KFGVRITDIVSPQ 90 >gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Thermoanaerobacter tengcongensis MB4] Length = 366 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + N DLI+++P+ + + LG I +++ L++G +I LDK GE VDI N + IAKGE Sbjct: 281 SKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGE 340 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++E +FGVR+ +I++ Sbjct: 341 VVVIDE---NFGVRITDIVH 357 >gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320] gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320] gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] Length = 136 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + +LIM+IPVK+ + LG M I L++LS+G V++LD GE +DI IN IA+GE+ Sbjct: 52 DINLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 111 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + +G+R+ +I+ Sbjct: 112 VVSD---KYGIRITDII 125 >gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella australiensis 50-1 BON] gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella australiensis 50-1 BON] Length = 366 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 71/108 (65%), Gaps = 7/108 (6%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 SE +++ V + + +++++ +L+ S N +LIM+IP+++ + LG + +++ L Sbjct: 258 SEKVVKAQPV--VFQQLNNEAPEVLQGS--NMNLIMDIPLQVTVELGRTKKTVKDILELG 313 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 G VI LD+ GE +DI +N + +A+GE+ +++E +FGVR+IE+++ Sbjct: 314 TGSVIELDRLAGEPIDILVNGKLVARGEVIVIDE---NFGVRIIEMID 358 >gi|229544405|ref|ZP_04433463.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus coagulans 36D1] gi|229324890|gb|EEN90567.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus coagulans 36D1] Length = 368 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N D++++IP+++ + LG + ++ + G ++ LDK GE VDI IN+Q IA GE Sbjct: 283 TKNLDMLLDIPLEVTVELGRTSKTVREILEMGAGSIVELDKLAGEPVDILINHQLIAIGE 342 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++E+ FGVRV +I++ Sbjct: 343 VVVIDEN---FGVRVTDIVS 359 >gi|330814982|ref|YP_004358687.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3] gi|327367375|gb|AEA58731.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3] Length = 149 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 8/123 (6%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQI 81 D + D + N + + + +P+S ++N ST N D+I++IPVKM + Sbjct: 23 DEAMDDWAAALAEQNDQPIASGATGAGVFQPLSKAASN----STHNDIDMILDIPVKMTV 78 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ Sbjct: 79 ELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLT 135 Query: 142 EIL 144 +I+ Sbjct: 136 DII 138 >gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198] gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198] Length = 136 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + +LIM+IPVK+ + LG M I L++LS+G V++LD GE +DI IN IA+GE+ Sbjct: 52 DINLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVV 111 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + +G+R+ +I+ Sbjct: 112 VVSD---KYGIRITDII 125 >gi|255022052|ref|ZP_05294058.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] gi|254968538|gb|EET26094.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] Length = 120 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 4/95 (4%) Query: 55 SSDSNN--ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 SSD N +L + + DL++N+P+++ + LG M N++ LS+G VI L++ VGE + Sbjct: 19 SSDETNEKLLTPGSPSVDLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPL 78 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I IN + A GE ++ ++ FGVR+ ++N + Sbjct: 79 TIYINGEIFAYGEAVLVNQE--RFGVRLTALVNKE 111 >gi|33592494|ref|NP_880138.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I] gi|33572140|emb|CAE41683.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I] gi|332381912|gb|AEE66759.1| flagellar motor switch protein FliN [Bordetella pertussis CS] Length = 166 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM++PV+M + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ Sbjct: 80 DIDLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 139 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ D +G+R+ +I+ Sbjct: 140 VV---DDKYGIRLTDII 153 >gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 83 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ Sbjct: 1 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 60 Query: 130 EEDDTHFGVRVIEILN 145 + +GVR+ +I+ Sbjct: 61 AD---KYGVRITDIIT 73 >gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627] gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627] Length = 137 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ +N S + + + DLIM+IPVK Sbjct: 4 LNNPADDNNGAMDDLWAEALSEQKSTNNKSAAEAMFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ L+ GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEIL 144 R+ +I+ Sbjct: 121 RITDII 126 >gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8] gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8] Length = 179 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ Sbjct: 93 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 152 Query: 128 IMEEDDTHFGVRVIEIL 144 ++E+ +G+R+ +I+ Sbjct: 153 VVED---KYGIRLTDII 166 >gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121] gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121] Length = 150 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 DLIM+IPV + + LGS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ Sbjct: 67 GMDLIMDIPVTLSMELGSTSIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVV 126 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +G+R+ ++++ Sbjct: 127 VVND---KYGIRLTDVVS 141 >gi|329849953|ref|ZP_08264799.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum C19] gi|328841864|gb|EGF91434.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum C19] Length = 108 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++PV + +LG M +S L+ L G V+ LD++VGE++DI +NN+ +A+GE+ ++ Sbjct: 32 VFDVPVNISAVLGKSYMSVSQLLKLGAGSVLELDRKVGEAIDIYVNNRLVARGEVVVV-- 89 Query: 132 DDTHFGVRVIEILNAQ 147 D GV + EI+ ++ Sbjct: 90 -DDRLGVTMTEIIKSE 104 >gi|33601557|ref|NP_889117.1| flagellar motor switch protein [Bordetella bronchiseptica RB50] gi|33575993|emb|CAE33073.1| flagellar motor switch protein [Bordetella bronchiseptica RB50] Length = 172 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM++PV+M + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ Sbjct: 86 DIDLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 145 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ D +G+R+ +I+ Sbjct: 146 VV---DDKYGIRLTDII 159 >gi|255021380|ref|ZP_05293428.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] gi|254969243|gb|EET26757.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] Length = 150 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 64/106 (60%), Gaps = 14/106 (13%) Query: 51 SEPISSDSNNILEKSTD-----------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 +EP+++ LE+++ N D+I++IPV + + LG +QI NL+ L++G Sbjct: 39 AEPVAAAPMPDLEETSPAGGAPAGGAHANLDMILDIPVNLSVELGRTKIQIRNLLQLAQG 98 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 V+ L++ GE +D+ +N IA+GE+ ++ + FG+R+ +I++ Sbjct: 99 SVVELERLAGEPMDVLVNGYLIAQGEVVLVND---KFGIRLTDIIS 141 >gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046] gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046] Length = 137 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN I++GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDIIT 127 >gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium papyrosolvens DSM 2782] gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium papyrosolvens DSM 2782] Length = 400 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++P+++ + LG I +++ G VI LDK GE VDI +N + IAKGE+ Sbjct: 321 NISLIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKGEVV 380 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E FGVR+ +I++ Sbjct: 381 VIDE---SFGVRITDIIH 395 >gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10] gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulolyticum H10] Length = 402 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 5/89 (5%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D ++ EK N LIM++P+++ + LG I +++ G VI LDK GE VDI + Sbjct: 314 DGLSVTEKK--NISLIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILV 371 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N + IAKGE+ +++E FGVR+ +I++ Sbjct: 372 NGKAIAKGEVVVIDE---SFGVRITDIIH 397 >gi|167644980|ref|YP_001682643.1| flagellar motor switch protein [Caulobacter sp. K31] gi|167347410|gb|ABZ70145.1| flagellar motor switch protein FliN [Caulobacter sp. K31] Length = 111 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 50/73 (68%), Gaps = 3/73 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++PV + +LG M ++ L+ LS G ++ LD++VGE++DI +NN+ +A+GE+ +++E Sbjct: 35 VFDVPVNISAVLGRAHMSVAQLLQLSAGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94 Query: 132 DDTHFGVRVIEIL 144 GV + EI+ Sbjct: 95 ---RLGVTMTEII 104 >gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Halanaerobium praevalens DSM 2228] Length = 417 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 54/78 (69%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +LI ++P+++ + LG M+I ++++L G +I LDK GE VD+ +N + +AKGE+ Sbjct: 335 NMELIKDVPLEVTVRLGKTVMKIRDILDLGDGSIIELDKLAGEPVDLLVNGKLVAKGEVV 394 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FG RV +I++ Sbjct: 395 VIDE---NFGFRVKDIIS 409 >gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC BAA-894] gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894] Length = 154 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + +LIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 70 DINLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 129 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 130 VVAD---KYGVRITDIIT 144 >gi|85859178|ref|YP_461380.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] gi|85722269|gb|ABC77212.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] Length = 163 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I++IP+ + + LG C M IS L+ L +G +I L K GE +D+ +N + IA+GE+ Sbjct: 80 DLDFILDIPLTLSVELGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVV 139 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ +I++ Sbjct: 140 VVNE---KFGIRLTDIVSP 155 >gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 354 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE Sbjct: 268 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 327 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++E +FGVRV +I++ Sbjct: 328 VVVIDE---NFGVRVTDIVS 344 >gi|83955111|ref|ZP_00963767.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] gi|83840440|gb|EAP79613.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] Length = 114 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 2/78 (2%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I + + ++++LG M IS L+NL+KG VI LD+RVGE VDI IN++ +A+G++ Sbjct: 33 SLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLV 92 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ D GV + EI+ Sbjct: 93 RVQGD--SLGVALREIVK 108 >gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum BKT015925] gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum BKT015925] Length = 417 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + N DLI+++P+++ ++LG I +++ L G +I LDK E V+I +N +KIA G Sbjct: 330 APQNIDLILDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYG 389 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ +++E +FGVR++ I++ + Sbjct: 390 EVVVVDE---NFGVRIVNIVSGE 409 >gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii MLHE-1] gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 65/105 (61%), Gaps = 5/105 (4%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 ++ ++D + EP + N+ ++ N D+IM+IPV + + +G + I +L+ L++G V Sbjct: 119 AERAELDEL-EPDAGAGRNLGDEEA-NLDVIMDIPVTLSMEIGRTQISIRHLLQLNQGSV 176 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++A Sbjct: 177 VELDRLAGEPLDVMVNGTLIAHGEVVVVNE---RFGIRLTDVISA 218 >gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032] gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032] Length = 154 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + +LIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 70 DINLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 129 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 130 VVAD---KYGVRITDIIT 144 >gi|83944188|ref|ZP_00956644.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp. EE-36] gi|83845055|gb|EAP82936.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp. EE-36] Length = 114 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 2/77 (2%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I + + ++++LG M IS L+NL+KG VI LD+RVGE VDI IN++ +A+G++ Sbjct: 33 SLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLV 92 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ D GV + EI+ Sbjct: 93 RVQGD--SLGVALREIV 107 >gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ethanoligenens harbinense YUAN-3] gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ethanoligenens harbinense YUAN-3] Length = 374 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +NF+LI +P+ + + +G + +++ + G +I LDK+ G+ VDI +N Q IA+GE+ Sbjct: 294 NNFELIQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPVDIIVNGQLIAQGEV 353 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E+ FGVR+ EI+ Q Sbjct: 354 VVIDEN---FGVRITEIIGKQ 371 >gi|16125160|ref|NP_419724.1| flagellar motor switch protein [Caulobacter crescentus CB15] gi|221233890|ref|YP_002516326.1| flagellar motor switch protein [Caulobacter crescentus NA1000] gi|462113|sp|Q03593|FLIN_CAUCR RecName: Full=Flagellar motor switch protein FliN gi|144250|gb|AAA66328.1| flagellar switch protein [Caulobacter crescentus CB15] gi|13422174|gb|AAK22892.1| flagellar motor switch protein FliN [Caulobacter crescentus CB15] gi|220963062|gb|ACL94418.1| flagellar motor switch protein FliN [Caulobacter crescentus NA1000] Length = 110 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++DI +NN+ +A Sbjct: 26 DKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVA 85 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 +GE+ +++E GV + EI+ Sbjct: 86 RGEVVVVDE---RLGVTMTEII 104 >gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulovorans 743B] gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B] gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulovorans 743B] Length = 400 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 56/81 (69%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLIM++P+ + ++LG I ++++L+ G +I LDK E V+I +N +KIA GE+ Sbjct: 315 NNIDLIMDVPLNISVVLGKTRKSIKDILSLNNGSLIELDKLAEEPVEILVNGKKIAYGEV 374 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I++++ Sbjct: 375 VVVDE---NFGVRITSIVSSE 392 >gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM 2876] gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM 2876] Length = 426 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLIM++P+++ + LG I ++ + G ++ L+K GE +D+ +N + +AKGE+ Sbjct: 351 ENIDLIMDVPLEVTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEV 410 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++EE FGV++ EI+ Sbjct: 411 VVIEES---FGVKITEIV 425 >gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D str. 1873] gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D str. 1873] Length = 394 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+++ ++LG I +++ L G +I LDK E V+I +N +KIA GE+ Sbjct: 310 NIDLILDVPLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVV 369 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR++ I++ + Sbjct: 370 VVDE---NFGVRIVNIVSGE 386 >gi|295696125|ref|YP_003589363.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus tusciae DSM 2912] gi|295411727|gb|ADG06219.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus tusciae DSM 2912] Length = 395 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 54/82 (65%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 TDN DL++++ + + + LG + +++ S G V+ LD+ GE VDI +N + IAKGE Sbjct: 307 TDNLDLLLDVSLTVSVELGRTHQSVREVLSWSLGSVVELDRLAGEPVDIYVNQKLIAKGE 366 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + +++E+ FGVRV +I++ + Sbjct: 367 VVVIDEN---FGVRVTDIVHPR 385 >gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName: Full=Flagellar motor switch protein MopA Length = 106 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 22 DIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 81 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I+ Sbjct: 82 VVSD---KYGVRITDIIT 96 >gi|187918151|ref|YP_001883714.1| flagellar motor switch protein FliN [Borrelia hermsii DAH] gi|119860999|gb|AAX16794.1| flagellar motor switch protein FliN [Borrelia hermsii DAH] Length = 114 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 54/77 (70%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N L+M++ +++ + LG +I +++ +S+G +ITLDK GE VDI +N + +AKGE+ Sbjct: 36 NLGLLMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVVAKGEVV 95 Query: 128 IMEEDDTHFGVRVIEIL 144 +++E +FGVR+ EI+ Sbjct: 96 VIDE---NFGVRITEII 109 >gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17] gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17] Length = 172 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 4/94 (4%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E SSDS N + S D D+IM+IPV + + +G+ + I NL+ L++G VI LD+ GE Sbjct: 73 EEFSSDSVNTSKGSPD-LDVIMDIPVTISMEVGNTMIPIRNLLQLNQGSVIELDRLAGEP 131 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 132 LDVLVNGTLIAHGEVVMVND---KFGIRLTDVMS 162 >gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 353 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++E +FGVRV +I++ Sbjct: 327 VVVIDE---NFGVRVTDIVS 343 >gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 353 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++E +FGVRV +I++ Sbjct: 327 VVVIDE---NFGVRVTDIVS 343 >gi|144233|gb|AAA23038.1| putative [Caulobacter crescentus CB15] Length = 101 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++DI +NN+ +A Sbjct: 17 DKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVA 76 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 +GE+ +++E GV + EI+ Sbjct: 77 RGEVVVVDE---RLGVTMTEII 95 >gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein [Tepidanaerobacter sp. Re1] gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Tepidanaerobacter sp. Re1] Length = 376 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 11/95 (11%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 EP ++ S+++ +LI+++P+++ + LG I ++ +S G +I LDK GE Sbjct: 285 EPTAAQSSSL--------NLILDVPLEVTVELGRTEKTIKEILEISSGTIIELDKMAGEP 336 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 DI +N + +AKGE+ +++E +FGVR+ EI+N+ Sbjct: 337 ADILVNGKLVAKGEVVVIDE---NFGVRITEIINS 368 >gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 398 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DLIM++P+ + + LG I ++ L++G +I LDK GE VD+ +N + IAKG Sbjct: 312 SPQNLDLIMDVPLDVSVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKG 371 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ +++E ++G+R+ I++ Sbjct: 372 EVVVIDE---NYGIRITTIIS 389 >gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus B316] gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus B316] Length = 412 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +I ++P+++ + LG I+++++ + G +I LDK GE VD+ +N + +AKGE+ Sbjct: 337 ENIGIIKDVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEV 396 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++EE FGVRV EI+ Sbjct: 397 VVIEE---SFGVRVTEIV 411 >gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM 12260] gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM 12260] Length = 374 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI++IPV++ + LG I ++ + G V+ L++ GE VD+ +N + +A+GE+ Sbjct: 290 NIDLIVDIPVRITVELGRARKTIGEVLGMGPGSVVELNRMAGEPVDVLVNGKLMARGEVV 349 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E FG+RV EI++ Sbjct: 350 VIDE---SFGIRVTEIVS 364 >gi|114569234|ref|YP_755914.1| flagellar motor switch protein [Maricaulis maris MCS10] gi|114339696|gb|ABI64976.1| flagellar motor switch protein FliN [Maricaulis maris MCS10] Length = 118 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 54/82 (65%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 EKS + + ++PV + +LG + +++L+ L+ G V+ LD+++GE++DI +NN+ +A Sbjct: 34 EKSAADLAPVFDVPVNISAVLGKAHIDVNSLLKLTSGSVVELDRKIGEAIDIYVNNRLVA 93 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 +GE+ ++ D GV + EI+ Sbjct: 94 RGEVVVV---DDRLGVTMTEII 112 >gi|119899014|ref|YP_934227.1| flagellar motor switch FliN [Azoarcus sp. BH72] gi|119671427|emb|CAL95340.1| flagellar motor switch FliN [Azoarcus sp. BH72] Length = 159 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +FD+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N IA+GE+ Sbjct: 75 DFDMILDIPVQLTVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQGEVV 134 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + FG+R+ +I+ Sbjct: 135 VVND---KFGIRLTDII 148 >gi|82702482|ref|YP_412048.1| surface presentation of antigens (SPOA) protein [Nitrosospira multiformis ATCC 25196] gi|82410547|gb|ABB74656.1| Surface presentation of antigens (SPOA) protein [Nitrosospira multiformis ATCC 25196] Length = 151 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++ DL+M+IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 66 NDIDLVMDIPVQLTVQLGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEV 125 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++ E FG+R+ +I+ Sbjct: 126 VVVNE---KFGIRLTDII 140 >gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] Length = 401 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+++ ++LG I +++NL G +I LDK E V+I +N +K+A GE+ Sbjct: 317 NIDLILDVPLEISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVV 376 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ I++ Sbjct: 377 VIDE---NFGVRITGIVS 391 >gi|288962690|ref|YP_003452984.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] gi|288914956|dbj|BAI76440.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] Length = 112 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 62/102 (60%), Gaps = 3/102 (2%) Query: 47 VDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +D+ S+ + I +K D + I N+PV +Q++LG M ++ L+ L +G V+ L+ Sbjct: 9 LDDDSKQAEKAPDRIGDKPYDGPMNAIYNVPVDVQVVLGRTSMLVAQLLKLGRGAVLELE 68 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++V E V++ +N++ +A+GE+ I+E D GV + EI+ + Sbjct: 69 RKVDEPVEVLVNHRLVARGEVVIVE--DQRLGVTLTEIVRTE 108 >gi|160880834|ref|YP_001559802.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium phytofermentans ISDg] gi|160429500|gb|ABX43063.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium phytofermentans ISDg] Length = 401 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 60/93 (64%), Gaps = 5/93 (5%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +P + + +L+ T+N DL++++P+++ + LG I +++ + G ++ L++ GE Sbjct: 313 QPFVNTGSPLLQ--TENIDLLLDVPLEVTVELGRTSKSIREILDFAPGTIVELNRLAGEP 370 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 +D+ +N + +AKGE+ ++EE FG+RV +I+ Sbjct: 371 IDVLVNGKYVAKGEVVVIEE---AFGIRVTDII 400 >gi|220934502|ref|YP_002513401.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7] gi|219995812|gb|ACL72414.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7] Length = 154 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 7/104 (6%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 +QK D+++ S+S + N D++++IPV + + +G M I NL+ L++G V Sbjct: 49 VQKASFDSLA----SESRAPATQEDVNLDVVLDIPVTISMEIGRTRMPIRNLLQLNQGSV 104 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 105 VELDRLAGEPLDVYVNGTLIAHGEVVVVNE---KFGIRLTDVIS 145 >gi|114765261|ref|ZP_01444393.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Pelagibaca bermudensis HTCC2601] gi|114542396|gb|EAU45424.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Roseovarius sp. HTCC2601] Length = 114 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 2/80 (2%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ D ++N+ + +QI+LG M I+ L+ LS+G +I LDK +G+ V++ IN++ +A+G Sbjct: 30 GANSIDAMLNVGLNVQIVLGQTRMPIAQLLKLSRGSIIELDKSIGQPVEVVINDRLVARG 89 Query: 125 EITIMEEDDTHFGVRVIEIL 144 ++ +E+D GV +IEI+ Sbjct: 90 DLVKLEDD--RLGVSLIEIV 107 >gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016] gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 396 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 55/80 (68%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+++ ++LG I +++NL G ++ LDK E V+I +N +K+A GE+ Sbjct: 313 NIDLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVI 372 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I++++ Sbjct: 373 VIDE---NFGVRIKSIISSE 389 >gi|187926921|ref|YP_001893266.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J] gi|241665250|ref|YP_002983609.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D] gi|187728675|gb|ACD29839.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J] gi|240867277|gb|ACS64937.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D] Length = 150 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 61/96 (63%), Gaps = 5/96 (5%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +P+++D ++ ++ D+I++IPV++ + LG + I NL+ L++G V+ LD G Sbjct: 50 VFKPLTADGLGGAQR--NDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAG 107 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 E +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 108 EPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 140 >gi|300113611|ref|YP_003760186.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113] gi|299539548|gb|ADJ27865.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113] Length = 153 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 67/111 (60%), Gaps = 11/111 (9%) Query: 42 IQKNDVDNISEP------ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 ++K +V ++S P + +D N+ + N +LI++IPV M + +G + I NL+ Sbjct: 40 VKKEEVASMSGPQAVLEELEADPGNVTKDI--NLELILDIPVTMAMEIGRTRISIRNLLQ 97 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G V+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++A Sbjct: 98 LNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVVNE---KFGIRLTDVISA 145 >gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555] gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555] Length = 392 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 55/80 (68%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+++ ++LG I +++NL G ++ LDK E V+I +N +K+A GE+ Sbjct: 309 NIDLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVI 368 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I++++ Sbjct: 369 VIDE---NFGVRIKSIISSE 385 >gi|293605020|ref|ZP_06687415.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii ATCC 43553] gi|292816589|gb|EFF75675.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii ATCC 43553] Length = 101 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+G Sbjct: 12 SGTDIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQG 71 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+ +G+R+ +I+ Sbjct: 72 EVVVVED---KYGIRLTDIIT 89 >gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM 16841] gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM 16841] Length = 379 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +N LIM++P+++ + LG I +++ + G +I L++ GE +DI +N + +AK Sbjct: 301 AGAENIGLIMDVPLEVTVELGRTTKSIHEILDFAPGTIIELNRIAGEPIDILVNGKYVAK 360 Query: 124 GEITIMEEDDTHFGVRVIEIL 144 GE+ ++EE FGVR+ EI+ Sbjct: 361 GEVVVIEE---SFGVRITEIV 378 >gi|254194758|ref|ZP_04901189.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13] gi|169651508|gb|EDS84201.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13] Length = 165 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 4/82 (4%) Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ IN IA+ Sbjct: 77 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLINGCLIAQ 136 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ +I+ Sbjct: 137 GEVVVVND---KFGIRLTDIIT 155 >gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C str. Eklund] gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C str. Eklund] Length = 388 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + N DLI+++P+++ ++LG I ++ L G +I LDK E V+I +N +KIA G Sbjct: 301 APQNIDLILDVPLEISVVLGKTKKSIKEVLELGTGSLIELDKLAEEPVEIYVNGKKIAYG 360 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ +++E +FGVR++ I++ + Sbjct: 361 EVVVVDE---NFGVRIMNIVSGE 380 >gi|309779461|ref|ZP_07674222.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA] gi|308921702|gb|EFP67338.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA] Length = 151 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 61/96 (63%), Gaps = 5/96 (5%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +P+++D ++ ++ D+I++IPV++ + LG + I NL+ L++G V+ LD G Sbjct: 51 VFKPLTADGLGGAQR--NDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAG 108 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 E +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 109 EPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIIT 141 >gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 356 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE+ Sbjct: 273 NLNLLMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVV 332 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV +I++ Sbjct: 333 VIDE---NFGVRVTDIVS 347 >gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens 16/4] Length = 394 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + +N DLI+++P+ + + LG I ++++ + G +I L+K GE +D+ +N + +AKG Sbjct: 316 AQENIDLILDVPLDVTVELGRTNKTIQDILDFAPGTIIELNKIAGEPIDVLVNGKYVAKG 375 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+ ++EE FGVR+ EI+ Sbjct: 376 EVVVIEE---SFGVRITEII 392 >gi|91776322|ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT] gi|91710309|gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT] Length = 142 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 7/101 (6%) Query: 48 DNISE--PISSD--SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 DN +E P+ ++ S N L ++ ++ D I++IPV++ + LG + I NL+ L++G V+ Sbjct: 34 DNKAEQAPVFTEFSSKNKLHETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVE 93 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 94 LDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 131 >gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium carboxidivorans P7] gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans P7] gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium carboxidivorans P7] gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans P7] Length = 406 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+ + ++LG I +++NL G +I LDK E V+I +N +++A GE+ Sbjct: 323 NIDLILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAYGEVV 382 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ I++++ Sbjct: 383 VVDE---NFGVRITSIISSE 399 >gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ZM4] gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ZM4] gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 103 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 55/80 (68%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T + L+ +IPVKM + +GS + ++ L++L++G V+ LD++ E +D+ +N + IAKGE Sbjct: 18 TKDLGLLSDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANELLDVVVNGKLIAKGE 77 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + + + FGVR++++++ Sbjct: 78 VVTV---NGRFGVRIVDVVS 94 >gi|148253397|ref|YP_001237982.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1] gi|146405570|gb|ABQ34076.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1] Length = 115 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 52/79 (65%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + ++PV++ +LG M + L+ L G V+ LD++VGE++DI +NN+ +A+GE+ Sbjct: 37 DLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVV 96 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++E+ GV + EI+ + Sbjct: 97 LVED---KLGVTMTEIIKS 112 >gi|30248479|ref|NP_840549.1| flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718] gi|30138365|emb|CAD84374.1| possible flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718] Length = 157 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 57/86 (66%), Gaps = 3/86 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 N++L + ++ D+I++IPV++ + LG + I NL+ L++G V+ L+ GE +D+ +N Sbjct: 64 NDVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVVELNGMAGEPMDVLVNG 123 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEIL 144 IA+GE+ ++ E FG+R+ +I+ Sbjct: 124 CLIAQGEVVVVNE---KFGIRLTDII 146 >gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297] gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297] Length = 165 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N + IA GE+ Sbjct: 82 NLDVILDIPVTISMEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVV 141 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++ E FG+R+ ++++ Q Sbjct: 142 MVNE---KFGIRLTDVVSQQ 158 >gi|212634375|ref|YP_002310900.1| flagellar motor switch protein [Shewanella piezotolerans WP3] gi|212555859|gb|ACJ28313.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] Length = 126 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 SSD+ + E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D Sbjct: 29 FSSDAAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLD 88 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +N IA GE+ ++ + FG+R+ ++++ Sbjct: 89 VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117 >gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] Length = 354 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 63/98 (64%), Gaps = 7/98 (7%) Query: 54 ISSDSNNILEKST----DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 +++D+ + + +++ N LIM++P+ + + +G ++ +++N + G V+ LDK+ Sbjct: 253 VTADTGHAVYQASPSINGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQAD 312 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VDI +N Q IA+GE+ ++ D +FGVR+ EI+NA+ Sbjct: 313 APVDIIVNGQLIARGEVVVI---DDNFGVRISEIVNAR 347 >gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum UT26S] gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum UT26S] Length = 112 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 F L+ +IPV+M + +GS ++++ +++LS+G V+ LD++ + +DI +N IAKGE+ Sbjct: 26 QFRLLADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEVV 85 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + + +G+R++EI A+ Sbjct: 86 TV---NGRYGIRIVEIAAAE 102 >gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium sticklandii DSM 519] gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium sticklandii] Length = 383 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 55/81 (67%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI ++ +K+ + LG I +++ + G ++ LD+ VGE +DI +N +K+AKGE+ Sbjct: 300 ENIDLIKDVLLKVTVELGRTTKPIDDILQFTPGSILELDRLVGEPLDIMVNGKKVAKGEV 359 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E ++G+R+ +I+ A+ Sbjct: 360 VVIDE---NYGIRITDIIKAE 377 >gi|167834867|ref|ZP_02461750.1| flagellar motor switch protein FliN [Burkholderia thailandensis MSMB43] Length = 130 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S + + ++ DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N Sbjct: 36 SKAVASSTHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVN 95 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145 IA+GE+ ++ + FG+R+ +I+ Sbjct: 96 GCLIAQGEVVVVND---KFGIRLTDIIT 120 >gi|167585019|ref|ZP_02377407.1| flagellar motor switch protein FliN [Burkholderia ubonensis Bu] Length = 163 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 8/97 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S ++ ST N D+I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 63 GVFQPLSKAAST----STHNDIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 118 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 152 >gi|167560938|ref|ZP_02353854.1| flagellar motor switch protein FliN [Burkholderia oklahomensis EO147] gi|167568198|ref|ZP_02361072.1| flagellar motor switch protein FliN [Burkholderia oklahomensis C6786] Length = 162 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 4/81 (4%) Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+ Sbjct: 74 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 133 Query: 124 GEITIMEEDDTHFGVRVIEIL 144 GE+ ++ + FG+R+ +I+ Sbjct: 134 GEVVVVND---KFGIRLTDII 151 >gi|53717667|ref|YP_106653.1| flagellar motor switch protein [Burkholderia pseudomallei K96243] gi|126440526|ref|YP_001057085.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668] gi|126454703|ref|YP_001064315.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106a] gi|134281531|ref|ZP_01768239.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305] gi|167892139|ref|ZP_02479541.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 7894] gi|217423854|ref|ZP_03455354.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576] gi|237814423|ref|YP_002898874.1| flagellar motor switch protein FliN [Burkholderia pseudomallei MSHR346] gi|242314847|ref|ZP_04813863.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106b] gi|254174650|ref|ZP_04881311.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 10399] gi|254184093|ref|ZP_04890684.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1655] gi|254186559|ref|ZP_04893076.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pasteur 52237] gi|254201358|ref|ZP_04907722.1| flagellar motor switch protein FliN [Burkholderia mallei FMH] gi|254206700|ref|ZP_04913051.1| flagellar motor switch protein FliN [Burkholderia mallei JHU] gi|254260996|ref|ZP_04952050.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710a] gi|254298639|ref|ZP_04966090.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 406e] gi|254357363|ref|ZP_04973637.1| flagellar motor switch protein FliN [Burkholderia mallei 2002721280] gi|52208081|emb|CAH34011.1| probable flagellar motor switch protein [Burkholderia pseudomallei K96243] gi|126220019|gb|ABN83525.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668] gi|126228345|gb|ABN91885.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106a] gi|134247198|gb|EBA47284.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305] gi|147747252|gb|EDK54328.1| flagellar motor switch protein FliN [Burkholderia mallei FMH] gi|147752242|gb|EDK59308.1| flagellar motor switch protein FliN [Burkholderia mallei JHU] gi|148026427|gb|EDK84512.1| flagellar motor switch protein FliN [Burkholderia mallei 2002721280] gi|157808697|gb|EDO85867.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 406e] gi|157934244|gb|EDO89914.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pasteur 52237] gi|160695695|gb|EDP85665.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 10399] gi|184214625|gb|EDU11668.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1655] gi|217392917|gb|EEC32939.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576] gi|237504588|gb|ACQ96906.1| flagellar motor switch protein FliN [Burkholderia pseudomallei MSHR346] gi|242138086|gb|EES24488.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106b] gi|254219685|gb|EET09069.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710a] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%) Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+ Sbjct: 77 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 136 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ +I+ Sbjct: 137 GEVVVVND---KFGIRLTDIIT 155 >gi|237653570|ref|YP_002889884.1| flagellar motor switch protein FliN [Thauera sp. MZ1T] gi|237624817|gb|ACR01507.1| flagellar motor switch protein FliN [Thauera sp. MZ1T] Length = 155 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++FD+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N IA+G Sbjct: 68 ALNDFDMILDIPVQITVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQG 127 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+ ++ + FG+R+ +I+ Sbjct: 128 EVVVVND---KFGIRLTDII 144 >gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative Flagelar Motor Switch Protein Flin (Tm0680) From Thermotoga Maritima At 1.85 A Resolution gi|39654325|pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative Flagelar Motor Switch Protein Flin (Tm0680) From Thermotoga Maritima At 1.85 A Resolution Length = 96 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E +D +L+++IP+K+ + LG + ++ G +I LDK GE VDI +N + IA Sbjct: 7 EVPSDKLELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIA 66 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ +++E+ FGVR+ EI++ + Sbjct: 67 RGEVVVIDEN---FGVRITEIVSPK 88 >gi|67641903|ref|ZP_00440668.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse 4] gi|121599067|ref|YP_994774.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1] gi|124384349|ref|YP_001027841.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10229] gi|126449143|ref|YP_001082211.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10247] gi|167000455|ref|ZP_02266269.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20] gi|167717396|ref|ZP_02400632.1| flagellar motor switch protein FliN [Burkholderia pseudomallei DM98] gi|167736439|ref|ZP_02409213.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 14] gi|167813513|ref|ZP_02445193.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 91] gi|167822055|ref|ZP_02453526.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 9] gi|167843668|ref|ZP_02469176.1| flagellar motor switch protein FliN [Burkholderia pseudomallei B7210] gi|167900651|ref|ZP_02487856.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC 13177] gi|167908871|ref|ZP_02495962.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 112] gi|167916910|ref|ZP_02504001.1| flagellar motor switch protein FliN [Burkholderia pseudomallei BCC215] gi|226193338|ref|ZP_03788948.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pakistan 9] gi|121227877|gb|ABM50395.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1] gi|124292369|gb|ABN01638.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10229] gi|126242013|gb|ABO05106.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10247] gi|225934938|gb|EEH30915.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pakistan 9] gi|238522916|gb|EEP86358.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse 4] gi|243063643|gb|EES45829.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20] Length = 162 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%) Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+ Sbjct: 74 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 133 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ +I+ Sbjct: 134 GEVVVVND---KFGIRLTDIIT 152 >gi|254491664|ref|ZP_05104843.1| flagellar motor switch protein FliN [Methylophaga thiooxidans DMS010] gi|224463142|gb|EEF79412.1| flagellar motor switch protein FliN [Methylophaga thiooxydans DMS010] Length = 155 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 53/79 (67%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D++M+IPV + + +G + I NL+ LS+G V+ LD+ GE +D+ +N+ IA GE+ Sbjct: 72 DLDMVMDIPVTISMEIGRTRISIRNLLQLSQGSVVELDRLAGEPMDVLVNDTLIAHGEVV 131 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + FG+R+ ++++A Sbjct: 132 VVND---KFGIRLTDVISA 147 >gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans C54] Length = 100 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ Sbjct: 14 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 73 Query: 128 IMEEDDTHFGVRVIEIL 144 ++E+ +G+R+ +I+ Sbjct: 74 VVED---KYGIRLTDII 87 >gi|253996307|ref|YP_003048371.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8] gi|253982986|gb|ACT47844.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8] Length = 157 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 56/87 (64%), Gaps = 3/87 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + N L ++ ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N Sbjct: 63 AKNKLHETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVN 122 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144 IA+GE+ ++ + FG+R+ +I+ Sbjct: 123 GCLIAQGEVVVVND---KFGIRLTDII 146 >gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein [uncultured bacterium] Length = 117 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 46/68 (67%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +S + + +PV++ +LG+ +Q+S ++ L +G V+ LD+ VGE VDI NN+ IA+ Sbjct: 35 RSDGRMEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIAR 94 Query: 124 GEITIMEE 131 GE+ ++E+ Sbjct: 95 GEVVVVED 102 >gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6] Length = 137 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI N IA+GE+ Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + +GVR+ +I+ Sbjct: 113 VVAD---KYGVRITDII 126 >gi|76810554|ref|YP_331657.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710b] gi|76580007|gb|ABA49482.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710b] Length = 143 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%) Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ST N DLI++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+ Sbjct: 55 STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 114 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ +I+ Sbjct: 115 GEVVVVND---KFGIRLTDIIT 133 >gi|53723901|ref|YP_104281.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 23344] gi|52427324|gb|AAU47917.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 23344] Length = 124 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 8/98 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + P+S + + ST N DLI++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 24 GVFRPLSKATAS----STHNDIDLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 79 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 80 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 114 >gi|312962265|ref|ZP_07776757.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens WH6] gi|311283602|gb|EFQ62191.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens WH6] Length = 155 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 11/94 (11%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 EP+S D N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE Sbjct: 64 EPVSLDG--------PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEP 115 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 116 LDVLVNGTLIAHGEVVVVNE---KFGIRLTDVIS 146 >gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus TCF52B] gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus TCF52B] Length = 365 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 7/140 (5%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----D 67 ++ +E + +P+ N + + + ++KN V S + KST D Sbjct: 222 QEKVESSAAGTSSPVSTQNYAEHSATTTKNVEKNPVSVSPVQFQSFESGGTVKSTGEIPD 281 Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +++IP+ + + LG + + ++ LS G +I LDK GE VDI +N + IA+GE+ Sbjct: 282 RIQALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKLIARGEVV 341 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ EI+ Q Sbjct: 342 VIDE---NFGVRITEIVTPQ 358 >gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum 5521] gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum 5521] gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4 str. BoNT E BL5262] Length = 412 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLIM++P+ + ++LG I +++NL G +I LDK E V+I +N ++IA GE+ Sbjct: 329 NIDLIMDVPLDISVVLGRTKKSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALGEVV 388 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ I++ Sbjct: 389 VVDE---NFGVRITNIVS 403 >gi|258511385|ref|YP_003184819.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478111|gb|ACV58430.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 381 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + N L+ ++P+ + + LG I ++ L+ G ++ LDK GE VDI +N +KIA Sbjct: 294 RPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAI 353 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ +++E +FGVRV +I+ A Sbjct: 354 GEVVVIDE---NFGVRVTDIVQA 373 >gi|297538202|ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera sp. 301] gi|297257549|gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera sp. 301] Length = 157 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 56/87 (64%), Gaps = 3/87 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + N L+ + ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N Sbjct: 63 AKNKLQDTQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVN 122 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144 IA+GE+ ++ + FG+R+ +I+ Sbjct: 123 GCLIAQGEVVVVND---KFGIRLTDII 146 >gi|313672896|ref|YP_004051007.1| flagellar motor switch protein flin [Calditerrivibrio nitroreducens DSM 19672] gi|312939652|gb|ADR18844.1| flagellar motor switch protein FliN [Calditerrivibrio nitroreducens DSM 19672] Length = 289 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 55/80 (68%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DL++++ V + I +GS M + ++V+LS G+++ LD+ E V + +NN+ IAKGE+ Sbjct: 204 NIDLLLDVEVPVSIRIGSTKMFLKDIVSLSPGNIVELDEYAEEPVVVMVNNKPIAKGEVV 263 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 I+ D +FGVR+ EI++ + Sbjct: 264 IV---DGYFGVRIKEIISKE 280 >gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermodesulfobium narugense DSM 14796] gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermodesulfobium narugense DSM 14796] Length = 386 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 57/80 (71%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N + ++NIP+++ + LG+ M + +++ L G VI L+K GE++++ IN++ IA+GE+ Sbjct: 304 NIENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMINDELIARGEVV 363 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E +FG+R+ EI++ + Sbjct: 364 VIDE---NFGIRITEIISPR 380 >gi|218288307|ref|ZP_03492606.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius LAA1] gi|218241666|gb|EED08839.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius LAA1] Length = 381 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + N L+ ++P+ + + LG I ++ L+ G ++ LDK GE VDI +N +KIA Sbjct: 294 RPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAI 353 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ +++E +FGVRV +I+ A Sbjct: 354 GEVVVIDE---NFGVRVTDIVQA 373 >gi|77165629|ref|YP_344154.1| surface presentation of antigens (SPOA) protein [Nitrosococcus oceani ATCC 19707] gi|254434523|ref|ZP_05048031.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27] gi|76883943|gb|ABA58624.1| Surface presentation of antigens (SPOA) protein [Nitrosococcus oceani ATCC 19707] gi|207090856|gb|EDZ68127.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27] Length = 143 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 59/95 (62%), Gaps = 5/95 (5%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E + +D N+ + N +LI++IPV M + +G + I NL+ L++G V+ LD+ GE Sbjct: 46 EELEADPGNVTKDI--NLELILDIPVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEP 103 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +D+ +N IA GE+ ++ E FG+R+ ++++A Sbjct: 104 LDVLVNGCLIAHGELVVVNEK---FGIRLTDVISA 135 >gi|296135699|ref|YP_003642941.1| flagellar motor switch protein FliN [Thiomonas intermedia K12] gi|295795821|gb|ADG30611.1| flagellar motor switch protein FliN [Thiomonas intermedia K12] Length = 144 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + DL+M+IPV + + LG +QI L+ L++G V+ LD+ GE +D+ +N IA+GE+ Sbjct: 60 NQLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEV 119 Query: 127 TIMEEDDTHFGVRVIEILN 145 ++ + FG+R+ +I++ Sbjct: 120 VLVND---KFGIRLTDIVS 135 >gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum Rt17-B1] gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum Rt17-B1] Length = 357 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + L+ +IP+ + + LG + + ++ L G +I LDK GE VDI +NN+ IA+GE+ Sbjct: 273 ERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIELDKLTGEPVDIYVNNKLIARGEV 332 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +++E +FGVR+ EI++ + Sbjct: 333 VVIDE---NFGVRITEIVSPK 350 >gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis L1-82] gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis L1-82] gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1] Length = 392 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLIM++P+++ + LG I +++ + G +I L++ GE +D+ +N + +AKGE+ Sbjct: 317 ENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEV 376 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++EE +G+R+ EI+ Sbjct: 377 VVIEE---SYGIRITEII 391 >gi|294339870|emb|CAZ88233.1| Flagellar motor switch protein fliN [Thiomonas sp. 3As] Length = 144 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 DL+M+IPV + + LG +QI L+ L++G V+ LD+ GE +D+ +N IA+GE+ Sbjct: 61 QLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEVV 120 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ +I++ Sbjct: 121 LVND---KFGIRLTDIVS 135 >gi|78485772|ref|YP_391697.1| Type III secretion system outer membrane O protein [Thiomicrospira crunogena XCL-2] gi|78364058|gb|ABB42023.1| Flagellar motor switch protein FliN [Thiomicrospira crunogena XCL-2] Length = 153 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 63/105 (60%), Gaps = 9/105 (8%) Query: 49 NISEPISSDSNNILEKSTDN------FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 N S+ I + S + LEK + D++++IPV +Q+ +G + I NL++ ++G VI Sbjct: 45 NNSDEIDAASFDALEKGRGDSSEKVDLDVLLDIPVTLQLEIGRAKVSIRNLLSYTQGSVI 104 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +D+ GE +D+ +N IA GE+ ++ + FGVR+ ++++ Q Sbjct: 105 EMDRLAGEPLDLLVNGTLIAHGEVVVIND---KFGVRLTDVVSPQ 146 >gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4] Length = 392 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLIM++P+++ + LG I +++ + G +I L++ GE +D+ +N + +AKGE+ Sbjct: 317 ENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEV 376 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++EE +G+R+ EI+ Sbjct: 377 VVIEE---SYGIRITEII 391 >gi|77457774|ref|YP_347279.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] gi|77381777|gb|ABA73290.1| putative flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] Length = 152 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRLTDVIS 143 >gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea MMB-1] gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea MMB-1] Length = 150 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPV + + LG + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ Sbjct: 67 DLDLIMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVV 126 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +G+R+ ++++ Sbjct: 127 VVND---KYGIRLTDVVS 141 >gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC 49176] gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC 49176] Length = 370 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N LIM++P+++ + LG I +++ S G +I L+K GE++D+ +N + +AKGE+ Sbjct: 295 ENIGLIMDVPLEVTVELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEV 354 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++E+ +FG+R+ EI+ Sbjct: 355 VVIED---NFGIRITEIV 369 >gi|302185373|ref|ZP_07262046.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae 642] Length = 152 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRLTDVIS 143 >gi|302338091|ref|YP_003803297.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM 11293] gi|301635276|gb|ADK80703.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM 11293] Length = 375 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N L+M++ ++M + LG I +++ + +G +I LDK GE VDI +N++ IAKGE+ Sbjct: 292 NIGLLMDVYMEMTVELGRTKRLIKDILGMGEGTIIELDKLAGEPVDILVNHKLIAKGEVV 351 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVRV EI++ Sbjct: 352 VIDE---NFGVRVTEIVS 366 >gi|330972447|gb|EGH72513.1| flagellar motor switch protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 152 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRLTDVIS 143 >gi|227873537|ref|ZP_03991782.1| possible flagellar motor switch protein FliY [Oribacterium sinus F0268] gi|227840627|gb|EEJ51012.1| possible flagellar motor switch protein FliY [Oribacterium sinus F0268] Length = 472 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 DN +++M +P+++ + +G + ++++ ++G ++ LDK GE D+ +N + IAKG+I Sbjct: 389 DNREMLMKVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQADLYVNGECIAKGDI 448 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++EE +FG+R+ EIL Sbjct: 449 VVVEE---NFGIRITEIL 463 >gi|170694406|ref|ZP_02885560.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M] gi|170140829|gb|EDT09003.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M] Length = 155 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 63/105 (60%), Gaps = 12/105 (11%) Query: 48 DNISEPISSDSNNILEK--------STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 DN SE IS+ + + + + ++ D+I++IPV+M + LG + I NL+ L++G Sbjct: 44 DNTSE-ISATTAGVFQPLSKVAPTTTRNDIDMILDIPVQMTVELGRTKLAIRNLLQLAQG 102 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 103 SVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 144 >gi|28869174|ref|NP_791793.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato str. DC3000] gi|213967549|ref|ZP_03395697.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato T1] gi|301382886|ref|ZP_07231304.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato Max13] gi|302061096|ref|ZP_07252637.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato K40] gi|302131288|ref|ZP_07257278.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852414|gb|AAO55488.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato str. DC3000] gi|213927850|gb|EEB61397.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato T1] gi|330876027|gb|EGH10176.1| flagellar motor switch protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964685|gb|EGH64945.1| flagellar motor switch protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 152 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRLTDVIS 143 >gi|71733965|ref|YP_275530.1| flagellar motor switch protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484905|ref|ZP_05638946.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629022|ref|ZP_06461976.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651612|ref|ZP_06482955.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487823|ref|ZP_07005863.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554518|gb|AAZ33729.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157548|gb|EFH98628.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325125|gb|EFW81194.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329384|gb|EFW85377.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330866456|gb|EGH01165.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889049|gb|EGH21710.1| flagellar motor switch protein [Pseudomonas syringae pv. mori str. 301020] gi|330986500|gb|EGH84603.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011075|gb|EGH91131.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 152 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRLTDVIS 143 >gi|330953759|gb|EGH54019.1| flagellar motor switch protein [Pseudomonas syringae Cit 7] Length = 152 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRLTDVIS 143 >gi|330808226|ref|YP_004352688.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376334|gb|AEA67684.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 152 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRLTDVIS 143 >gi|66046675|ref|YP_236516.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae B728a] gi|289678974|ref|ZP_06499864.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae FF5] gi|63257382|gb|AAY38478.1| Surface presentation of antigens (SPOA) protein [Pseudomonas syringae pv. syringae B728a] gi|330899438|gb|EGH30857.1| flagellar motor switch protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940698|gb|EGH43709.1| flagellar motor switch protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330976006|gb|EGH76072.1| flagellar motor switch protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 152 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRLTDVIS 143 >gi|331016993|gb|EGH97049.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 152 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRLTDVIS 143 >gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC 35185] gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC 35185] Length = 398 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI+++P+++ + LG I +++ L+ G ++ LDK GE VDI +N + +AKGE+ Sbjct: 315 NIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVV 374 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ +I++ Sbjct: 375 VIDE---NFGVRITDIVS 389 >gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Selenomonas sputigena ATCC 35185] gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Selenomonas sputigena ATCC 35185] Length = 394 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI+++P+++ + LG I +++ L+ G ++ LDK GE VDI +N + +AKGE+ Sbjct: 311 NIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVV 370 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FGVR+ +I++ Sbjct: 371 VIDE---NFGVRITDIVS 385 >gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetivibrio cellulolyticus CD2] gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetivibrio cellulolyticus CD2] Length = 410 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++P+++ + LG I +++ G +I LDK GE VDI +N + IAKGE+ Sbjct: 331 NIGLIMDVPLQVTVELGRTNRLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAKGEVV 390 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E FGVR+ +I++ Sbjct: 391 VIDES---FGVRITDIIH 405 >gi|104782810|ref|YP_609308.1| flagellar motor switch protein [Pseudomonas entomophila L48] gi|95111797|emb|CAK16521.1| flagellar motor switch protein FliN [Pseudomonas entomophila L48] Length = 154 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 71 NLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 131 VVNE---KFGIRLTDVIS 145 >gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum L-1] gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum L-1] Length = 112 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 54/79 (68%), Gaps = 3/79 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 F L+ +IPV+M + +GS ++++ +++L++G V+ LD++ + +DI +N IAKGE+ Sbjct: 27 FRLLADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEVVT 86 Query: 129 MEEDDTHFGVRVIEILNAQ 147 + + +G+R++EI A+ Sbjct: 87 V---NGRYGIRIVEIAAAE 102 >gi|330961231|gb|EGH61491.1| flagellar motor switch protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 153 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 70 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 129 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 130 VVNE---KFGIRLTDVIS 144 >gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168] gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168] Length = 375 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +LI ++P+++ + LG M I +++L +G ++ L+K GE VD+ +N + IAKGE+ Sbjct: 293 NMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVV 352 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E +FG RV +I++ Sbjct: 353 VIDE---NFGFRVKDIIS 367 >gi|167579275|ref|ZP_02372149.1| flagellar motor switch protein FliN [Burkholderia thailandensis TXDOH] gi|167617381|ref|ZP_02386012.1| flagellar motor switch protein FliN [Burkholderia thailandensis Bt4] Length = 165 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 4/82 (4%) Query: 65 STDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ST N D+I++IPVKM + LG + I NL+ L++G V+ LD GE +D+ +N IA+ Sbjct: 77 STHNDIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 136 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ +I+ Sbjct: 137 GEVVVVND---KFGIRLTDIIT 155 >gi|237799246|ref|ZP_04587707.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022101|gb|EGI02158.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 153 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 70 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 129 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 130 VVNE---KFGIRLTDVIS 144 >gi|83721171|ref|YP_440588.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|83654996|gb|ABC39059.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] Length = 143 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 8/98 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + P+S + + ST N D+I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 43 GVFRPLSKAAAS----STHNDIDMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 98 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 99 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 133 >gi|323527700|ref|YP_004229853.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001] gi|323384702|gb|ADX56793.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001] Length = 155 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 8/97 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + ST N D+I++IPV+M + LG + I NL+ L++G V+ LD Sbjct: 55 GVFQPLS----KVAPTSTRNDIDMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGM 110 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 111 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 144 >gi|170722846|ref|YP_001750534.1| flagellar motor switch protein [Pseudomonas putida W619] gi|169760849|gb|ACA74165.1| flagellar motor switch protein FliN [Pseudomonas putida W619] Length = 154 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 71 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 131 VVNE---KFGIRLTDVIS 145 >gi|107021593|ref|YP_619920.1| flagellar motor switch FliN [Burkholderia cenocepacia AU 1054] gi|116688063|ref|YP_833686.1| flagellar motor switch protein FliN [Burkholderia cenocepacia HI2424] gi|170731413|ref|YP_001763360.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] gi|105891782|gb|ABF74947.1| Flagellar motor switch FliN [Burkholderia cenocepacia AU 1054] gi|116646152|gb|ABK06793.1| flagellar motor switch protein FliN [Burkholderia cenocepacia HI2424] gi|169814655|gb|ACA89238.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] Length = 162 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 70/124 (56%), Gaps = 9/124 (7%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQ 80 ++P D ++ +E +Q + +P+S + + ST N ++I++IPVKM Sbjct: 35 EDPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS----STHNDIEMILDIPVKMT 90 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ Sbjct: 91 VELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRL 147 Query: 141 IEIL 144 +I+ Sbjct: 148 TDII 151 >gi|167034914|ref|YP_001670145.1| flagellar motor switch protein [Pseudomonas putida GB-1] gi|166861402|gb|ABY99809.1| flagellar motor switch protein FliN [Pseudomonas putida GB-1] Length = 154 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 71 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 131 VVNE---KFGIRLTDVIS 145 >gi|327481258|gb|AEA84568.1| flagellar motor switch protein [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ Sbjct: 77 NLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVV 136 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 137 VVNE---KFGIRLTDVIS 151 >gi|26991046|ref|NP_746471.1| flagellar motor switch protein [Pseudomonas putida KT2440] gi|24986078|gb|AAN69935.1|AE016632_6 flagellar motor switch protein FliN [Pseudomonas putida KT2440] Length = 161 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 78 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 137 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 138 VVNE---KFGIRLTDVIS 152 >gi|325981183|ref|YP_004293585.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212] gi|325530702|gb|ADZ25423.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212] Length = 180 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLI++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 96 DIDLILDIPVQMTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 155 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + FG+R+ +I+ Sbjct: 156 VVND---KFGIRLTDII 169 >gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 368 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + N LIM++P+ + + +G ++ +++N + G V+ LDK+ VDI +N Q IA+GE Sbjct: 283 SGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGE 342 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + ++ D +FGVR+ EI+N Sbjct: 343 VVVI---DDNFGVRITEIVN 359 >gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1] gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1] Length = 154 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 71 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 130 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 131 VVNE---KFGIRLTDVIS 145 >gi|5921671|gb|AAD56295.1| FliN [Pseudomonas putida] gi|313497807|gb|ADR59173.1| FliN [Pseudomonas putida BIRD-1] Length = 160 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 77 NLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 136 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 137 VVNE---KFGIRLTDVIS 151 >gi|206890622|ref|YP_002249867.1| flagellar motor switch protein FliN [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742560|gb|ACI21617.1| flagellar motor switch protein FliN [Thermodesulfovibrio yellowstonii DSM 11347] Length = 139 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 T + D I++IP+++ +++G + + L+ L++G V+ LDK GE +++ +N + + +G Sbjct: 53 KTRDIDFILDIPLELVVVIGRTRILVQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRG 112 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R+ +I++ Q Sbjct: 113 EVVVVNE---KFGIRITDIISPQ 132 >gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1] gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1] Length = 107 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 54/80 (67%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 DN L+ +IP+++ + +GS ++++ L++L+ G V+ LD++ E +DI +N +AKGE+ Sbjct: 20 DNLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAKGEV 79 Query: 127 TIMEEDDTHFGVRVIEILNA 146 + + FG+RV++I+ A Sbjct: 80 VTV---NGKFGIRVVDIVAA 96 >gi|70729041|ref|YP_258775.1| flagellar motor switch protein [Pseudomonas fluorescens Pf-5] gi|68343340|gb|AAY90946.1| flagellar motor switch protein FliN [Pseudomonas fluorescens Pf-5] Length = 153 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 70 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 129 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 130 VVNE---KFGIRLTDVIS 144 >gi|254246640|ref|ZP_04939961.1| Surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia PC184] gi|124871416|gb|EAY63132.1| Surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia PC184] Length = 164 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 7/123 (5%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81 ++P D ++ +E +Q + +P+S + + + ++ ++I++IPVKM + Sbjct: 37 EDPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTV 93 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ Sbjct: 94 ELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLT 150 Query: 142 EIL 144 +I+ Sbjct: 151 DII 153 >gi|229591842|ref|YP_002873961.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25] gi|229363708|emb|CAY51093.1| probable flagellar motor switch protein [Pseudomonas fluorescens SBW25] Length = 155 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 72 NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 131 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 132 VVNE---KFGIRLTDVIS 146 >gi|226941270|ref|YP_002796344.1| FliN [Laribacter hongkongensis HLHK9] gi|226716197|gb|ACO75335.1| FliN [Laribacter hongkongensis HLHK9] Length = 141 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + N D+I++IPV M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G Sbjct: 54 APQNLDMILDIPVNMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQG 113 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+ ++ + FG+R+ +I+ Sbjct: 114 EVVVVND---KFGIRLTDII 130 >gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex degensii KC4] gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex degensii KC4] Length = 360 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 SS + L+ +LI++IP+K+ ++LG I ++ L G ++ LD E V+I Sbjct: 259 SSPAPPPLDVDRSRLELILDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEI 318 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +N +A+GE+ ++EE+ FGVR+ I+ Q Sbjct: 319 LVNGVLVARGEVVVVEEN---FGVRITSIVTPQ 348 >gi|224826625|ref|ZP_03699726.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] gi|224601226|gb|EEG07408.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] Length = 143 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 59 NLDMILDIPVQLTVELGRTRIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 118 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ +I+ Sbjct: 119 VV---NDKFGIRLTDIIT 133 >gi|307731350|ref|YP_003908574.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003] gi|307585885|gb|ADN59283.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003] Length = 155 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G Sbjct: 68 TRNDIDMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 127 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+ ++ + FG+R+ +I+ Sbjct: 128 EVVVVND---KFGIRLTDII 144 >gi|146282918|ref|YP_001173071.1| flagellar motor switch protein [Pseudomonas stutzeri A1501] gi|145571123|gb|ABP80229.1| flagellar motor switch protein FliN [Pseudomonas stutzeri A1501] Length = 193 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +GS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ Sbjct: 110 NLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVV 169 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 170 VVNE---KFGIRLTDVIS 184 >gi|27365288|ref|NP_760816.1| flagellar motor switch protein [Vibrio vulnificus CMCP6] gi|37680657|ref|NP_935266.1| flagellar motor switch protein [Vibrio vulnificus YJ016] gi|320155672|ref|YP_004188051.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O] gi|27361435|gb|AAO10343.1| Flagellar motor switch protein fliN [Vibrio vulnificus CMCP6] gi|37199406|dbj|BAC95237.1| polar flagellar switch protein FliN [Vibrio vulnificus YJ016] gi|319930984|gb|ADV85848.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O] Length = 136 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 10/101 (9%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++ + S PI++D D IM+IPV + + +G + I NL+ L++G V+ L Sbjct: 37 EELKDTSAPITADERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVEL 89 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 DRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM 8271] gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM 8271] Length = 373 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI ++P+++ + LG I +++ L G V+ LD+ GE VD+ +N + IAK E+ Sbjct: 289 NNLDLIFDVPLQVSVELGKANKTIKDILELGPGSVVELDRIAGEPVDMIVNGKLIAKCEV 348 Query: 127 TIMEEDDTHFGVRVIEILN 145 ++ E FG+R+ EI+N Sbjct: 349 VVINE---TFGIRITEIIN 364 >gi|91223553|ref|ZP_01258818.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269965695|ref|ZP_06179808.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91191639|gb|EAS77903.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269829763|gb|EEZ83999.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 136 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 10/100 (10%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 ++ + S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD Sbjct: 38 ELKDTSSPISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELD 90 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 91 RLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|262393596|ref|YP_003285450.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] gi|262337190|gb|ACY50985.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] Length = 136 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E + S+ I E D IM+IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 37 EELKDTSSPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGES 96 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 97 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC BAA-613] gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC BAA-613] Length = 368 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++P+ + + +G ++ +++N S G V+ LDK+ VDI +N Q IA+GE+ Sbjct: 285 NLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVV 344 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++ D +FGVR+ EI+N + Sbjct: 345 VI---DDNFGVRISEIVNTR 361 >gi|254506934|ref|ZP_05119073.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus 16] gi|323491453|ref|ZP_08096637.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546] gi|323496547|ref|ZP_08101601.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326] gi|219550219|gb|EED27205.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus 16] gi|323314322|gb|EGA67402.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546] gi|323318391|gb|EGA71348.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326] Length = 136 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 62/106 (58%), Gaps = 10/106 (9%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 M Q +++++ S PIS D D I++IPV + + +G + I NL+ L++G Sbjct: 32 MSAQLDELEDTSSPISDDERR-------KLDTILDIPVTISMEVGRSQISIRNLLQLNQG 84 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 85 SVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF] gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens QYMF] Length = 393 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N LI ++P+ + + LG +IS ++ G +I L+K VGE +DI +N Q +AKGE+ Sbjct: 310 ENIALIQDVPLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEV 369 Query: 127 TIMEEDDTHFGVRVIEIL 144 +++E+ +G+R+ +I+ Sbjct: 370 VVIDEN---YGIRITDIV 384 >gi|134294172|ref|YP_001117907.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4] gi|134137329|gb|ABO53072.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4] Length = 169 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 8/121 (6%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILG 84 L D + N + ++ + +P+S + + ST N ++I++IPVKM + LG Sbjct: 46 LDDWAAALAEQNEQPVVAGATGAGVFQPLSKAAAS----STHNDIEMILDIPVKMTVELG 101 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD GE +D+ +N +A+GE+ ++ + FG+R+ +I+ Sbjct: 102 RTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLLAQGEVVVVND---KFGIRLTDII 158 Query: 145 N 145 Sbjct: 159 T 159 >gi|330445374|ref|ZP_08309026.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489565|dbj|GAA03523.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 129 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E ++ +S I + D IM+IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 30 EELTDESTPITDDERRKLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGES 89 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|206561842|ref|YP_002232607.1| flagellar motor switch protein FliN [Burkholderia cenocepacia J2315] gi|198037884|emb|CAR53828.1| flagellar motor switch protein FliN [Burkholderia cenocepacia J2315] Length = 151 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 51 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 106 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 107 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 141 >gi|171316889|ref|ZP_02906098.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5] gi|171097970|gb|EDT42788.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5] Length = 172 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 72 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 127 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 128 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 162 >gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC 35243] gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC 35239] gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC 35243] gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC 35239] Length = 248 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 62/102 (60%), Gaps = 3/102 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 K + ++ + P +S ++ E+ ++ L+ ++ + + +G + + ++++LS G VI Sbjct: 142 KKEGESATTPPASQASATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 201 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 LD+ G + D+ +N + IA GEI +++E+ +G+R+ EI++ Sbjct: 202 LDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 240 >gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis DSM 12885] gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis DSM 12885] Length = 287 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S DL++++P+++ + LG + ++ ++ G V+ LD+ GE VD+ +N + IA+G Sbjct: 201 SRGTLDLVLDVPLQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARG 260 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ +++E +FG+R+ +I++ Sbjct: 261 EVVVIDE---NFGIRITDIVS 278 >gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] Length = 370 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 70/112 (62%), Gaps = 11/112 (9%) Query: 42 IQKNDVDNISEPI---SSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVN 95 IQKN V ++S P+ S +S I++ +++ +++IP+ + + LG + + ++ Sbjct: 257 IQKNPV-SVS-PVQFQSFESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQVME 314 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 LS G +I LDK GE VDI +N + IA+GE+ +++E +FGVR+ EI++ Q Sbjct: 315 LSVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDE---NFGVRITEIVSPQ 363 >gi|172059106|ref|YP_001806758.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6] gi|171991623|gb|ACB62542.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6] Length = 163 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 63 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 118 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153 >gi|90579935|ref|ZP_01235743.1| flagellar motor switch protein [Vibrio angustum S14] gi|90438820|gb|EAS64003.1| flagellar motor switch protein [Vibrio angustum S14] Length = 129 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E ++ D+ I + D IM+IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 30 EELTDDTVAITDDERRKLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGES 89 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|170698079|ref|ZP_02889160.1| flagellar motor switch protein FliN [Burkholderia ambifaria IOP40-10] gi|170137040|gb|EDT05287.1| flagellar motor switch protein FliN [Burkholderia ambifaria IOP40-10] Length = 163 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 63 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 118 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153 >gi|88813209|ref|ZP_01128449.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] gi|88789531|gb|EAR20658.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] Length = 138 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + LG + I NL+ L++G V+ LD+ GE +D+ +N +A GE+ Sbjct: 55 NLDVILDVPVTLSMELGRTQIDIRNLLQLNQGSVVELDRLAGEPLDVMVNGTLVAHGEVV 114 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 115 VVNE---RFGIRLTDVVS 129 >gi|269961628|ref|ZP_06175990.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833669|gb|EEZ87766.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 136 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 7/104 (6%) Query: 46 DVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 DVD I E + S I E D IM+IPV + + +G + I NL+ L++G V Sbjct: 27 DVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSV 86 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 87 VELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp. MED105] gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp. MED105] Length = 149 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 61/106 (57%), Gaps = 3/106 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + Q +D S + ++ + ++ D+I++IPV++ + LG + I +++ L++G Sbjct: 37 LFAQASDAKPASGLFQPFAGSVASGTQNDIDMILDIPVQLTVELGRTKIPIKHILQLAQG 96 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 VI LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 97 SVIELDGLAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIIT 139 >gi|186477686|ref|YP_001859156.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815] gi|184194145|gb|ACC72110.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815] Length = 154 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 70 DIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 129 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + FG+R+ +I+ Sbjct: 130 VVND---KFGIRLTDII 143 >gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas maltophilia K279a] gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14] gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas maltophilia K279a] gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14] Length = 111 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 64/105 (60%), Gaps = 8/105 (7%) Query: 45 NDVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 ND+D + EP + +++ + N D+I+++PV + + +G + I NL+ L++G Sbjct: 2 NDIDAL-EPTPAQFSSLQADEANGPDLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGS 60 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 V+ L++ GES+D+ +N IA GE+ ++ + FGVR+ ++++ Sbjct: 61 VVELERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVS 102 >gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16] gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16] Length = 248 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 K + ++ + P +S + E+ ++ L+ ++ + + +G + + ++++LS G VI Sbjct: 142 KKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 201 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 LD+ G + D+ +N + IA GEI +++E+ +G+R+ EI++ Sbjct: 202 LDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 240 >gi|258621112|ref|ZP_05716146.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573] gi|261209861|ref|ZP_05924162.1| flagellar motor switch protein FliN [Vibrio sp. RC341] gi|262166226|ref|ZP_06033963.1| flagellar motor switch protein FliN [Vibrio mimicus VM223] gi|262170888|ref|ZP_06038566.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] gi|258586500|gb|EEW11215.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573] gi|260841047|gb|EEX67572.1| flagellar motor switch protein FliN [Vibrio sp. RC341] gi|261891964|gb|EEY37950.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] gi|262025942|gb|EEY44610.1| flagellar motor switch protein FliN [Vibrio mimicus VM223] Length = 136 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 10/100 (10%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 ++ N + PIS D D IM+IPV + + +G + I NL+ L++G V+ LD Sbjct: 38 ELKNTAPPISDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 90 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 91 RIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|34498584|ref|NP_902799.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] gi|34104438|gb|AAQ60796.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 147 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 63 NLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 122 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ +I+ Sbjct: 123 VV---NDKFGIRLTDIIT 137 >gi|78064700|ref|YP_367469.1| Type III secretion system outer membrane O protein [Burkholderia sp. 383] gi|77965445|gb|ABB06825.1| Type III secretion system outer membrane O protein [Burkholderia sp. 383] Length = 163 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 63 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 118 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 119 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 152 >gi|302387781|ref|YP_003823603.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1] gi|302198409|gb|ADL05980.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium saccharolyticum WM1] Length = 456 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E+ +N +LIM +P+++ + +G + ++ +KG ++ LDK GE VD+ +N + IA Sbjct: 373 EEQEENRELIMGVPLEVSVEIGRTRKLVKEILEFTKGSLVILDKLAGEQVDLYVNGRCIA 432 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 KG++ ++ D +FG+R+ EI Sbjct: 433 KGDVVVV---DDNFGIRITEI 450 >gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1] gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1] Length = 254 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 K + ++ + P +S + E+ ++ L+ ++ + + +G + + ++++LS G VI Sbjct: 148 KKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 207 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 LD+ G + D+ +N + IA GEI +++E+ +G+R+ EI++ Sbjct: 208 LDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 246 >gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Syntrophothermus lipocalidus DSM 12680] gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Syntrophothermus lipocalidus DSM 12680] Length = 400 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++P+ + + LG I +++L G ++ L+K GE VDI +N + IAKGE+ Sbjct: 317 NISLIMDVPLNVSVELGRTRKTIKEILDLGPGSIVQLEKLAGEPVDILVNGKLIAKGEVV 376 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E ++GVRV I++ Sbjct: 377 VIDE---NYGVRVTAIIS 391 >gi|115350087|ref|YP_771926.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD] gi|115280075|gb|ABI85592.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD] Length = 161 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 61 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGM 116 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 117 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 150 >gi|261252330|ref|ZP_05944903.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891] gi|260935721|gb|EEX91710.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891] Length = 136 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 61/103 (59%), Gaps = 10/103 (9%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 Q +++++ S PIS D D I++IPV + + +G + I NL+ L++G V+ Sbjct: 35 QLDELEDTSSPISEDERR-------KLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVV 87 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 88 ELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|209522294|ref|ZP_03270921.1| flagellar motor switch protein FliN [Burkholderia sp. H160] gi|209497270|gb|EDZ97498.1| flagellar motor switch protein FliN [Burkholderia sp. H160] Length = 153 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 69 DIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 128 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + FG+R+ +I+ Sbjct: 129 VVND---KFGIRLTDII 142 >gi|91785620|ref|YP_560826.1| flagellar motor switch protein FliN [Burkholderia xenovorans LB400] gi|91689574|gb|ABE32774.1| Flagellar motor switch protein FliN [Burkholderia xenovorans LB400] Length = 154 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G Sbjct: 67 TRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 126 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+ ++ + FG+R+ +I+ Sbjct: 127 EVVVVND---KFGIRLTDII 143 >gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427] gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium lentocellum DSM 5427] Length = 403 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 60/104 (57%), Gaps = 3/104 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 + DVD + S N +N DL+M++ +++ + LG +I ++ G +I Sbjct: 300 RADVDVQTPQFQSFDNRPKVYPKENMDLLMDVSLEVSVELGRTSRKIKEILEFGPGSIIE 359 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L++ VGE VD+ +N + +A GE+ +++E+ FG+R+ +I+N + Sbjct: 360 LNRLVGEPVDVLVNGKFVATGEVVVIDEN---FGIRITDIINPE 400 >gi|254251032|ref|ZP_04944350.1| flagellar motor switch protein [Burkholderia dolosa AUO158] gi|124893641|gb|EAY67521.1| flagellar motor switch protein [Burkholderia dolosa AUO158] Length = 166 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 66 GVFQPLSKAAPS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 121 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 122 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 155 >gi|86146128|ref|ZP_01064454.1| flagellar motor switch protein [Vibrio sp. MED222] gi|148976421|ref|ZP_01813127.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|218708831|ref|YP_002416452.1| flagellar motor switch protein [Vibrio splendidus LGP32] gi|85836075|gb|EAQ54207.1| flagellar motor switch protein [Vibrio sp. MED222] gi|145964244|gb|EDK29500.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|218321850|emb|CAV17825.1| Flagellar motor switch protein fliN [Vibrio splendidus LGP32] Length = 136 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 10/95 (10%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 43 SSPISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGE 95 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 S+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 96 SLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|292493589|ref|YP_003529028.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4] gi|291582184|gb|ADE16641.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4] Length = 152 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 13/121 (10%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--------NFDLIMNIPVKMQIILG 84 S + + K ++ +EP + + + E +TD N DLI++IPV M + +G Sbjct: 28 SGSRQGQTAASKAQAESSAEPYAPPT--LEELATDPTAAAKDINLDLILDIPVTMAMEIG 85 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I +L+ L++G V+ L++ GE +D+ +N IA GE+ ++ E FG+R+ +++ Sbjct: 86 RTRISIRDLLKLNRGSVVELERLAGEPLDVLVNGCLIAHGEVVVVNE---KFGIRLTDVI 142 Query: 145 N 145 + Sbjct: 143 S 143 >gi|187925748|ref|YP_001897390.1| flagellar motor switch protein FliN [Burkholderia phytofirmans PsJN] gi|187716942|gb|ACD18166.1| flagellar motor switch protein FliN [Burkholderia phytofirmans PsJN] Length = 154 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G Sbjct: 67 TRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 126 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+ ++ + FG+R+ +I+ Sbjct: 127 EVVVVND---KFGIRLTDII 143 >gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga mobilis SJ95] gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga mobilis SJ95] Length = 372 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 55/79 (69%), Gaps = 3/79 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +L++++P+++++ LGS + + ++ L +G +I L+K GE +DI N + IA+GE+ + Sbjct: 290 LELLLDVPLELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGEVVV 349 Query: 129 MEEDDTHFGVRVIEILNAQ 147 ++E +FG+RV EI++ + Sbjct: 350 IDE---NFGIRVTEIVSLR 365 >gi|260893866|ref|YP_003239963.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii KC4] gi|260866007|gb|ACX53113.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii KC4] Length = 114 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+T +L+ + +++ +LG + + L+ L +G VI LD+ GE+VD+ ++ QK + Sbjct: 22 KATTALELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAGEAVDLLLDGQKFGR 81 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ ++ E F VRV+++ Q Sbjct: 82 GEVMVLNE---RFVVRVLQVFPPQ 102 >gi|157961197|ref|YP_001501231.1| flagellar motor switch protein [Shewanella pealeana ATCC 700345] gi|157846197|gb|ABV86696.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] Length = 126 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 SD + E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ Sbjct: 31 SDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVM 90 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N IA GE+ ++ + FG+R+ ++++ Sbjct: 91 VNGTLIAHGEVVVVND---KFGIRLTDVIS 117 >gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC1989] gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC1989] Length = 150 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 DLI++IPV + + +GS + I NL+ L++G VI LD+ GE +++ +N IA GE+ + Sbjct: 68 LDLILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPLNVLVNGTLIAHGEVVV 127 Query: 129 MEEDDTHFGVRVIEILN 145 + E FG+R+ ++++ Sbjct: 128 VNE---KFGIRMTDVIS 141 >gi|296157440|ref|ZP_06840275.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1] gi|295892212|gb|EFG71995.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1] Length = 154 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+G Sbjct: 67 TRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQG 126 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+ ++ + FG+R+ +I+ Sbjct: 127 EVVVVND---KFGIRLTDII 143 >gi|161523222|ref|YP_001578234.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC 17616] gi|189348921|ref|YP_001944549.1| flagellar motor switch protein [Burkholderia multivorans ATCC 17616] gi|221214538|ref|ZP_03587508.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1] gi|160340651|gb|ABX13737.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC 17616] gi|189332943|dbj|BAG42013.1| flagellar motor switch protein [Burkholderia multivorans ATCC 17616] gi|221165428|gb|EED97904.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1] Length = 159 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 8/97 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 59 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 114 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 115 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 148 >gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium HTCC2207] gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium HTCC2207] Length = 108 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D++ NIPV + + +G ++I +L+ L++G V+ LD+ GE +D+ +NN +A+GE+ Sbjct: 26 NADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVVELDRIAGEPLDLLVNNTLVAQGEVV 85 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ E +GVR+ ++ Sbjct: 86 LVNE---RYGVRLTSVI 99 >gi|84388119|ref|ZP_00991015.1| flagellar motor switch protein [Vibrio splendidus 12B01] gi|84377186|gb|EAP94056.1| flagellar motor switch protein [Vibrio splendidus 12B01] Length = 136 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 10/95 (10%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 43 SSPISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGE 95 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 S+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 96 SLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|221201777|ref|ZP_03574814.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2M] gi|221207718|ref|ZP_03580726.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2] gi|221172564|gb|EEE05003.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2] gi|221178197|gb|EEE10607.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2M] Length = 159 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 8/98 (8%) Query: 49 NISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P+S + + ST N ++I++IPVKM + LG + I NL+ L++G V+ LD Sbjct: 59 GVFQPLSKAAAS----STHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGL 114 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 115 AGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 149 >gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus DSM 13965] gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus DSM 13965] Length = 132 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 DL++++P+++ + LG + L+ ++ G V+ LD+ GE VD+ +N + IA+GE+ Sbjct: 49 TLDLLLDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVV 108 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E+ FG+R+ +I++ Sbjct: 109 VIDEN---FGIRITDIVS 123 >gi|295678045|ref|YP_003606569.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002] gi|295437888|gb|ADG17058.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002] Length = 154 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 69 NDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEV 128 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++ + FG+R+ +I+ Sbjct: 129 VVVND---KFGIRLTDII 143 >gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2143] gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2143] Length = 152 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+IM+IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 DLDVIMDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 128 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 129 VVNE---KFGIRMTDVIS 143 >gi|28899015|ref|NP_798620.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836941|ref|ZP_01989608.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|260365239|ref|ZP_05777796.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030] gi|260878789|ref|ZP_05891144.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AN-5034] gi|260897384|ref|ZP_05905880.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus Peru-466] gi|260899943|ref|ZP_05908338.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AQ4037] gi|4322005|gb|AAD15908.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus] gi|28807234|dbj|BAC60504.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus RIMD 2210633] gi|149749714|gb|EDM60459.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|308088279|gb|EFO37974.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus Peru-466] gi|308094260|gb|EFO43955.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AN-5034] gi|308107230|gb|EFO44770.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AQ4037] gi|308115407|gb|EFO52947.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030] gi|328474448|gb|EGF45253.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329] Length = 136 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + S PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD+ Sbjct: 41 DTSRPITDDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLA 93 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 94 GESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB 8052] gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB 8052] Length = 398 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++P+ + ++LG I +++NL G +I LDK E V+I +N ++IA GE+ Sbjct: 315 NIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALGEVV 374 Query: 128 IMEEDDTHFGVRVIEILNA 146 +++E +FG+R+ I+++ Sbjct: 375 VVDE---NFGIRITNIVSS 390 >gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia R551-3] gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia R551-3] Length = 111 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 8/105 (7%) Query: 45 NDVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 ND+D + EP + + + N D+I+++PV + + +G + I NL+ L++G Sbjct: 2 NDIDAL-EPTPAQFGTLQAEEGAGADLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGS 60 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 V+ L++ GES+D+ +N IA GE+ ++ + FGVR+ ++++ Sbjct: 61 VVELERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVS 102 >gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis 11-1] gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis 11-1] Length = 109 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G M I NL+ L++G VI L++ GE +D+ +N IA GE+ Sbjct: 26 NLDVILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIELERGAGEPLDVYVNGTLIAHGEVV 85 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FGVR+ ++++ Sbjct: 86 VIND---RFGVRLTDVVS 100 >gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum sp. MED92] gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum sp. MED92] Length = 144 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S D+I++IPV + + +G + ISNL+ L++G VI LD+ GE +D+ +N IA G Sbjct: 58 SDPKLDVILDIPVTLSMEVGQTDIPISNLLQLNQGSVIELDRVAGEPLDVMVNGTLIAHG 117 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ + +G+R+ ++++ Q Sbjct: 118 EVVVVND---RYGIRLTDVISPQ 137 >gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Thermomicrobium roseum DSM 5159] gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Thermomicrobium roseum DSM 5159] Length = 128 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 D + ++ V++ LGS M+I +++ L G V+ LD+ GE V++TIN IA+GE+ Sbjct: 43 GIDFLRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVV 102 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E F VR+ EI++ + Sbjct: 103 VVDE---KFAVRITEIVSPE 119 >gi|90411031|ref|ZP_01219045.1| flagellar motor switch protein [Photobacterium profundum 3TCK] gi|90328244|gb|EAS44555.1| flagellar motor switch protein [Photobacterium profundum 3TCK] Length = 129 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 10/95 (10%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 36 STPISDDERR-------KLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGE 88 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 S+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 89 SLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7] gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7] Length = 157 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 74 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 134 VVNE---KFGIRLTDVIS 148 >gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P phosphatase fliY) (Flagellar motor switch protein fliY) [NC10 bacterium 'Dutch sediment'] Length = 324 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 54/77 (70%), Gaps = 3/77 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + D+++++ +++ + LG +QI +++ L G ++ LDK+ G++VDI +N++ IAKGE+ Sbjct: 240 NGIDMLLDVNLQVSVELGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEV 299 Query: 127 TIMEEDDTHFGVRVIEI 143 I++E+ FGVR+ I Sbjct: 300 IIIDEN---FGVRLTSI 313 >gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa] Length = 157 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 74 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 134 VVNE---KFGIRLTDVIS 148 >gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1] gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58] gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719] gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192] gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1] gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016] gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1] gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa UCBPP-PA14] gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719] gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192] gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58] gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016] Length = 157 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 74 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 134 VVNE---KFGIRLTDVIS 148 >gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum JW20] gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum JW20] Length = 398 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++P+++ + LG I +++ G +I LDK GE VDI +N + IA GE+ Sbjct: 319 NIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVV 378 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E FGVR+ +IL+ Sbjct: 379 VIDES---FGVRITDILH 393 >gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC 27405] gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC 27405] Length = 406 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++P+++ + LG I +++ G +I LDK GE VDI +N + IA GE+ Sbjct: 327 NIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVV 386 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E FGVR+ +IL+ Sbjct: 387 VIDES---FGVRITDILH 401 >gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str. Paris] gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str. Paris] Length = 111 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 9/96 (9%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 N P++ DS N + +LI++IPV + + +G M I NL+ L++G ++ LD+ Sbjct: 15 NQGNPLNPDSGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 68 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 G+ +D+ +N +A GE+ ++ + FGVR+ +I+ Sbjct: 69 GDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIV 101 >gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 2360] gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 2360] gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 1313] Length = 406 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++P+++ + LG I +++ G +I LDK GE VDI +N + IA GE+ Sbjct: 327 NIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVV 386 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E FGVR+ +IL+ Sbjct: 387 VIDES---FGVRITDILH 401 >gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula baltica SH 1] gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula baltica SH 1] gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula baltica WH47] Length = 141 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S N L ++ + DL+ + + ++I LG M++ ++ L G V+ LDK G+ VDI +N Sbjct: 54 SPNSLGEAAHDVDLLGEVEMDLRIELGRTQMRLEEVLRLRAGSVVALDKLAGDPVDIYVN 113 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + IA+GE+ +M + +F VRV E++ A Sbjct: 114 GRLIARGEVLVMND---NFCVRVTELVGA 139 >gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp] gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] Length = 155 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 72 NLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 131 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 132 VVNE---KFGIRLTDVIS 146 >gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01] gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01] Length = 155 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 72 NLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 131 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 132 VVNE---KFGIRLTDVIS 146 >gi|300311367|ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] gi|300074152|gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 3/87 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 +++I + ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N Sbjct: 57 ADDIKTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVN 116 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEIL 144 IA+GE+ ++ + FG+R+ +I+ Sbjct: 117 GCLIAQGEVVVVND---KFGIRLTDII 140 >gi|260767698|ref|ZP_05876633.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260617207|gb|EEX42391.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315179470|gb|ADT86384.1| flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 136 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 10/101 (9%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +++ + + PIS D D IM+IPV + + +G + I NL+ L++G V+ L Sbjct: 37 DELKDTTSPISDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVEL 89 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 DRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|15642124|ref|NP_231756.1| flagellar motor switch protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727203|ref|ZP_01680370.1| flagellar motor switch protein FliN [Vibrio cholerae V52] gi|153213272|ref|ZP_01948684.1| flagellar motor switch protein FliN [Vibrio cholerae 1587] gi|153803022|ref|ZP_01957608.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3] gi|153818985|ref|ZP_01971652.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457] gi|153822883|ref|ZP_01975550.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|153828628|ref|ZP_01981295.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39] gi|227082250|ref|YP_002810801.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2] gi|254291361|ref|ZP_04962154.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226] gi|254849210|ref|ZP_05238560.1| flagellar motor switch protein FliN [Vibrio cholerae MO10] gi|297582023|ref|ZP_06943942.1| flagellar motor switch protein FliN [Vibrio cholerae RC385] gi|298497853|ref|ZP_07007660.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757] gi|9656675|gb|AAF95270.1| flagellar motor switch protein FliN [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630448|gb|EAX62841.1| flagellar motor switch protein FliN [Vibrio cholerae V52] gi|124116072|gb|EAY34892.1| flagellar motor switch protein FliN [Vibrio cholerae 1587] gi|124121420|gb|EAY40163.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3] gi|126510480|gb|EAZ73074.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457] gi|126519579|gb|EAZ76802.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|148875899|gb|EDL74034.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39] gi|150422691|gb|EDN14645.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226] gi|227010138|gb|ACP06350.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2] gi|254844915|gb|EET23329.1| flagellar motor switch protein FliN [Vibrio cholerae MO10] gi|297533718|gb|EFH72560.1| flagellar motor switch protein FliN [Vibrio cholerae RC385] gi|297542186|gb|EFH78236.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757] Length = 138 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 10/100 (10%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 ++ N + PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD Sbjct: 40 ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 92 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 93 RIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 129 >gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2] Length = 151 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 68 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 127 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 128 VVNE---KFGIRLTDVIS 142 >gi|153834118|ref|ZP_01986785.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|156975422|ref|YP_001446329.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116] gi|148869488|gb|EDL68486.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|156527016|gb|ABU72102.1| hypothetical protein VIBHAR_03153 [Vibrio harveyi ATCC BAA-1116] Length = 136 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + S PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD+ Sbjct: 41 DTSSPITDDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLA 93 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 94 GESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|121586780|ref|ZP_01676562.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80] gi|153825567|ref|ZP_01978234.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2] gi|229507790|ref|ZP_04397295.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286] gi|229511973|ref|ZP_04401452.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|229513776|ref|ZP_04403238.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21] gi|229519109|ref|ZP_04408552.1| flagellar motor switch protein FliN [Vibrio cholerae RC9] gi|229522078|ref|ZP_04411495.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80] gi|229524127|ref|ZP_04413532.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis VL426] gi|229528863|ref|ZP_04418253.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)] gi|229607335|ref|YP_002877983.1| flagellar motor switch protein [Vibrio cholerae MJ-1236] gi|255745136|ref|ZP_05419085.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101] gi|262153474|ref|ZP_06028604.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1] gi|262191374|ref|ZP_06049564.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93] gi|121548947|gb|EAX58986.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80] gi|149740718|gb|EDM54817.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2] gi|229332637|gb|EEN98123.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)] gi|229337708|gb|EEO02725.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis VL426] gi|229341003|gb|EEO06008.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80] gi|229343798|gb|EEO08773.1| flagellar motor switch protein FliN [Vibrio cholerae RC9] gi|229348957|gb|EEO13914.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21] gi|229351938|gb|EEO16879.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|229355295|gb|EEO20216.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286] gi|229369990|gb|ACQ60413.1| flagellar motor switch protein FliN [Vibrio cholerae MJ-1236] gi|255736966|gb|EET92362.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101] gi|262030711|gb|EEY49345.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1] gi|262032749|gb|EEY51297.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93] gi|327484653|gb|AEA79060.1| Flagellar motor switch protein FliN [Vibrio cholerae LMA3894-4] Length = 136 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 10/100 (10%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 ++ N + PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD Sbjct: 38 ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 90 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 91 RIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM 12809] gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM 12809] Length = 299 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DL+++I V + + +GS M + +++ + G++I LD+ E V++ INN+ IA+G Sbjct: 212 SPSNLDLLLDIDVPVSVKMGSTKMFLKDILTMGSGNIIELDESADEPVELVINNKVIARG 271 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ I+ D +FG R+ EI++ Sbjct: 272 EVVIV---DGYFGFRIKEIVS 289 >gi|260772331|ref|ZP_05881247.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP 69.14] gi|260611470|gb|EEX36673.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP 69.14] Length = 136 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 59/101 (58%), Gaps = 10/101 (9%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +++ + S PI+ D D IM+IPV + + +G + I NL+ L++G V+ L Sbjct: 37 DELKDTSPPITEDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVEL 89 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 DRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans DSM 10331] gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans DSM 10331] Length = 95 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ++ N ++ N+ +++ + LG M + L+ L+ GDVI LD+ VD+ +N +AK Sbjct: 6 ETAANLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTLVAK 65 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ ++ D FGVR++EI+++ Sbjct: 66 GEVVVV---DDEFGVRILEIISS 85 >gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12] gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12] Length = 106 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E ++ DLI++IPV + + +G M I NL+ L++G ++ LD+ G+ +D+ +N +A Sbjct: 18 EADSEKMDLILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDRLAGDPLDVLVNGTLVA 77 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FGVR+ +I++ Sbjct: 78 HGEVVVVND---KFGVRLTDIVS 97 >gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC 25644] gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC 25644] Length = 409 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 DN DL+M+IP+ + ++LG+ + +++ + G VI L+K E +DI +N + IA+GE+ Sbjct: 325 DNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEV 384 Query: 127 TIMEEDDTHFGVRVIEILN 145 ++ + +FGVR+ IL+ Sbjct: 385 VVIND---NFGVRITNILS 400 >gi|218778862|ref|YP_002430180.1| flagellar motor switch protein FliN [Desulfatibacillum alkenivorans AK-01] gi|218760246|gb|ACL02712.1| Flagellar motor switch protein FliN [Desulfatibacillum alkenivorans AK-01] Length = 119 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IP+ + + LG M+I +L+ L +G V+ L K GE ++I +N + A+GE+ + Sbjct: 37 LDFILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVV 96 Query: 129 MEEDDTHFGVRVIEILNAQ 147 + E FGVR+ +I++ Q Sbjct: 97 VNE---KFGVRLTDIVSPQ 112 >gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58] gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58] Length = 111 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 59/92 (64%), Gaps = 9/92 (9%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +P+S +NN F L+ +IPV+M + +GS ++++ +++L++G ++ LD++ + Sbjct: 15 DPVSKMTNN------RQFKLLADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELDRQADDL 68 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +N IAKGE+ + + +G+R+++I Sbjct: 69 LDIMVNGALIAKGEVVTV---NGRYGIRIVDI 97 >gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] Length = 122 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + K + +PVK+ + L S + + +L + +GDVI LD+ VGE++DI +N + Sbjct: 34 IRKPLKHLSFFQQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRVNGALL 93 Query: 122 AKGEITIMEEDDTHFGVRVIEI 143 KGE+ E +GVR++E+ Sbjct: 94 GKGEVV---EVGGRYGVRLLEV 112 >gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1] gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1] Length = 153 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM+IPV + + LG+ + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ Sbjct: 70 DLDLIMDIPVVLSMELGNTEIAIRNLMQLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVV 129 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +G+R+ ++++ Sbjct: 130 VVND---KYGIRLTDVVS 144 >gi|260776476|ref|ZP_05885371.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] gi|260607699|gb|EEX33964.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] Length = 136 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 10/106 (9%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 M Q +++ + PIS D D I++IPV + + +G + I NL+ L++G Sbjct: 32 MAAQLDELQDTGSPISEDERR-------KLDTILDIPVTISMEVGRSQISIRNLLQLNQG 84 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 85 SVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901] gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901] Length = 147 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 64 DLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 123 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 124 VVNE---KFGIRMTDVIS 138 >gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7] gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7] Length = 360 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ N DLIM++P++ ++LG I ++++L G V+ L+K E ++I +N + IA+ Sbjct: 273 KTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAE 332 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ ++ E FG+R+ IL+ + Sbjct: 333 GEVVVINE---SFGIRITNILSKE 353 >gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702] gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702] Length = 419 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 61/105 (58%), Gaps = 10/105 (9%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 Q +N P+ S+ +N L+M++P+++ + +GS +I +++ S+G +I Sbjct: 316 QLAQFENFEAPLGSEQK-------ENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTII 368 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L+++ G VD+ +N IA+G++ ++ D +F VR+ EI+ ++ Sbjct: 369 ELERQAGAPVDVMVNGNLIARGDVVVI---DDNFAVRITEIVKSK 410 >gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides] gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides] Length = 152 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG Sbjct: 67 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 126 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R +I+ + Sbjct: 127 EVVMVGE---RFGIRFGQIIEPE 146 >gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 408 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 56/87 (64%), Gaps = 3/87 (3%) Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 ++ +N D+++++ +++ + LG +I +++ S+G +I LDK VGE +DI +N + Sbjct: 322 VVPTGAENIDILLDVALEVSVELGRTKKKIREILDFSEGSIIELDKLVGEPIDILVNGKF 381 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 IA GE+ +++E+ FGVR+ I+ + Sbjct: 382 IASGEVVVIDEN---FGVRIKSIIKPE 405 >gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus degradans 2-40] gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40] Length = 135 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 52 DLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 111 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 112 VVNE---KFGIRMTDVIS 126 >gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis] gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis] Length = 150 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV++ + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 67 DLDVILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 126 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 127 VVNE---KFGIRMTDVIS 141 >gi|226225726|ref|YP_002759832.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27] gi|226088917|dbj|BAH37362.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27] Length = 141 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 + +PV ++ LG M + ++ L +G VI LD+ GE +DI + +++ A+GE+ ++ E Sbjct: 63 LTLPVSIE--LGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVVLGE- 119 Query: 133 DTHFGVRVIEIL 144 HFGVR+ +L Sbjct: 120 --HFGVRITRVL 129 >gi|253998476|ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4] gi|313200551|ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688] gi|253985155|gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4] gi|312439867|gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688] Length = 145 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 54/84 (64%), Gaps = 3/84 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + ++ ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N I Sbjct: 55 MSETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 114 Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145 A+GE+ ++ + FG+R+ +I+ Sbjct: 115 AQGEVVVVND---KFGIRLTDIIT 135 >gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107] gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107] Length = 133 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 10/97 (10%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 I EP +SN + D+I++IPV + + +G + I NL+ L++G VI LD+ G Sbjct: 39 IPEPGKRNSN-------PDLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAG 91 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 E +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 92 EPLDVLVNGTLIAHGEVVVVNE---KFGIRMTDVISP 125 >gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 156 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 18/124 (14%) Query: 32 SSPTNNS----EMLIQKNDVDNISEPISSDSNNILEKSTD------NFDLIMNIPVKMQI 81 +SPT S + +I + +D + P + DS L+ D N D+I+++PV + + Sbjct: 32 ASPTRRSLPGLQQMINSDTLD--ASPATFDS---LQAEQDQNAADLNLDVILDVPVTLSL 86 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ ++ + FG+R+ Sbjct: 87 EVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND---RFGIRLT 143 Query: 142 EILN 145 ++++ Sbjct: 144 DVVS 147 >gi|163801853|ref|ZP_02195750.1| flagellar motor switch protein [Vibrio sp. AND4] gi|159174361|gb|EDP59165.1| flagellar motor switch protein [Vibrio sp. AND4] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + S PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD+ Sbjct: 41 DTSSPITDDERR-------KLDSIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLA 93 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 94 GESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase [Carnobacterium sp. 17-4] gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase [Carnobacterium sp. 17-4] Length = 359 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ N DLIM++P++ ++LG I ++++L G V+ L+K E ++I +N + IA+ Sbjct: 272 KTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAE 331 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ ++ E FG+R+ IL+ + Sbjct: 332 GEVVVINE---SFGIRITNILSKE 352 >gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus c2] gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus c2] Length = 139 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++M++PV + + +G + I +L+ L++G ++ LD+ GE +D+ +N IA+GE+ Sbjct: 56 NLEVLMDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRLAGEPLDVLVNGTLIARGEVV 115 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 116 VINE---KFGIRLTDVIS 130 >gi|269103168|ref|ZP_06155865.1| flagellar motor switch protein FliN [Photobacterium damselae subsp. damselae CIP 102761] gi|268163066|gb|EEZ41562.1| flagellar motor switch protein FliN [Photobacterium damselae subsp. damselae CIP 102761] Length = 128 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E ++ DS + + D I++IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 29 EELTDDSAPVSDDERRKLDSILDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRVAGES 88 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 89 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 119 >gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2] gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2] Length = 101 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 62/102 (60%), Gaps = 7/102 (6%) Query: 49 NISEPISSDSNN---ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 I+ P +SDS + + E DL++++ V++ + LGSC + + ++ LS G ++ L Sbjct: 2 TITTP-ASDSGSETKVSENDRKALDLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLA 60 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +R + V + +N++ +A GE+ ++EE +FG+++ EI+ Q Sbjct: 61 QRATDPVGLFVNDKLVAYGEVVVVEE---NFGIKITEIVGGQ 99 >gi|149188093|ref|ZP_01866388.1| flagellar motor switch protein [Vibrio shilonii AK1] gi|148838081|gb|EDL55023.1| flagellar motor switch protein [Vibrio shilonii AK1] Length = 136 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 10/93 (10%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GES+ Sbjct: 45 PISEDERR-------KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGESL 97 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 98 DVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira defluvii] gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira defluvii] Length = 124 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + N + +++IP+++ + +GS M I L+ L +G VI L+K GE +++ +NN+ +A+ Sbjct: 37 PANKNIEFVLDIPLQVTVQIGSTRMLIRELLQLGQGSVIELNKLAGEPMEVLVNNKLVAR 96 Query: 124 GEITIMEEDDTHFGVRVIEIL 144 GE+ ++ E FG+R+ +++ Sbjct: 97 GEVVVVNE---KFGIRLTDVV 114 >gi|224370776|ref|YP_002604940.1| FliN [Desulfobacterium autotrophicum HRM2] gi|223693493|gb|ACN16776.1| FliN [Desulfobacterium autotrophicum HRM2] Length = 113 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 53/82 (64%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 +++ D I++IP+ + + LG M +++L+ L +G ++ L+K GE +++ IN + IA Sbjct: 24 QQTGRELDFILDIPLDLSVELGRARMLVNDLLQLGQGSIVELNKLAGEPLEVYINRKLIA 83 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 +GE+ ++ E FGVR+ +I+ Sbjct: 84 RGEVVVVNE---KFGVRLTDII 102 >gi|127512305|ref|YP_001093502.1| flagellar motor switch protein [Shewanella loihica PV-4] gi|126637600|gb|ABO23243.1| flagellar motor switch protein FliN [Shewanella loihica PV-4] Length = 127 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 ++ S + E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D Sbjct: 30 LADSSKPLTEEEAAKLDTIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLD 89 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM 6192] gi|306532337|gb|ADN01871.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM 6192] gi|315186375|gb|EFU20135.1| flagellar motor switch protein FliN [Spirochaeta thermophila DSM 6578] Length = 350 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N L+M++ +++ + LG + ++ + +G +I LDK GE VDI +N++ IA+GE+ Sbjct: 267 NISLLMDVYMELTVELGRTKKMVKEILAMGEGTIIELDKLAGEPVDILVNHKLIARGEVV 326 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E+ FGVRV EI++ Sbjct: 327 VIDEN---FGVRVTEIIS 341 >gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans Z-2901] Length = 347 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 + P + +++ NI + + + + + +LI++IP+K++++LG I Sbjct: 229 TEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVVLGRTRRPIK 288 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +++ G +I LD+ V E V++ +N +AKGEI ++ E+ FG+++ +IL+ + Sbjct: 289 EILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGEN---FGIKINQILSPK 341 >gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1] gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1] Length = 411 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI++IP+K+ +ILG I +++ ++ G V+ LD E VDI +N +A GE+ Sbjct: 325 NLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILVNGTLVATGEVV 384 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E +FG+R+ I++ Sbjct: 385 VVNE---NFGIRITNIIS 399 >gi|71906404|ref|YP_283991.1| Type III secretion system outer membrane O protein [Dechloromonas aromatica RCB] gi|71846025|gb|AAZ45521.1| Type III secretion system outer membrane O protein [Dechloromonas aromatica RCB] Length = 147 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N IA+GE+ + Sbjct: 64 LDMILDIPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVV 123 Query: 129 MEEDDTHFGVRVIEIL 144 + + FG+R+ +I+ Sbjct: 124 VND---KFGIRLTDII 136 >gi|83859386|ref|ZP_00952907.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83852833|gb|EAP90686.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 125 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 63/102 (61%), Gaps = 6/102 (5%) Query: 46 DVDNISEPISSDSNNILE---KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 D + + EP + + +++ ++ + + ++PV + +LG + +++L+ L+ G V+ Sbjct: 21 DPEPMGEPANGAAQALIDEEVRTAVDLAPVFDVPVNISAVLGKAHVDVNSLLRLTSGSVL 80 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 LD++VGE++DI +N++ +A+GE+ ++ D GV + EI+ Sbjct: 81 ELDRKVGEAIDIYVNSRLVARGEVVVV---DDRLGVTMTEII 119 >gi|163750542|ref|ZP_02157780.1| flagellar motor switch protein [Shewanella benthica KT99] gi|161329697|gb|EDQ00686.1| flagellar motor switch protein [Shewanella benthica KT99] Length = 127 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 FD IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ + Sbjct: 45 FDTIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVV 104 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 105 VND---KFGIRLTDVIS 118 >gi|302878291|ref|YP_003846855.1| flagellar motor switch protein FliN [Gallionella capsiferriformans ES-2] gi|302581080|gb|ADL55091.1| flagellar motor switch protein FliN [Gallionella capsiferriformans ES-2] Length = 148 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 11/99 (11%) Query: 53 PISSDSNNILEK--------STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 P ++ ++ EK + ++ D+I++IPV++ + LG M I NL+ L++G V+ L Sbjct: 41 PPAAGKAHVFEKFGAAGSAATPNDLDMILDIPVQLTVELGRTKMPIKNLLQLAQGSVVEL 100 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 GE +D+ IN IA+GE+ ++ + G+R+ +I Sbjct: 101 SGMAGEPLDVMINGFLIAQGEVVVVND---KLGIRLTDI 136 >gi|126175120|ref|YP_001051269.1| flagellar motor switch protein [Shewanella baltica OS155] gi|153001444|ref|YP_001367125.1| flagellar motor switch protein [Shewanella baltica OS185] gi|160876169|ref|YP_001555485.1| flagellar motor switch protein [Shewanella baltica OS195] gi|217972624|ref|YP_002357375.1| flagellar motor switch protein [Shewanella baltica OS223] gi|304409951|ref|ZP_07391570.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|307302336|ref|ZP_07582094.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|125998325|gb|ABN62400.1| flagellar motor switch protein FliN [Shewanella baltica OS155] gi|151366062|gb|ABS09062.1| flagellar motor switch protein FliN [Shewanella baltica OS185] gi|160861691|gb|ABX50225.1| flagellar motor switch protein FliN [Shewanella baltica OS195] gi|217497759|gb|ACK45952.1| flagellar motor switch protein FliN [Shewanella baltica OS223] gi|304351360|gb|EFM15759.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|306914374|gb|EFN44795.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|315268365|gb|ADT95218.1| flagellar motor switch protein FliN [Shewanella baltica OS678] Length = 126 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ + Sbjct: 32 DSRPITKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLDVMV 91 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N IA GE+ ++ + FG+R+ ++++ Sbjct: 92 NGTLIAHGEVVVVND---KFGIRLTDVIS 117 >gi|167623387|ref|YP_001673681.1| flagellar motor switch protein [Shewanella halifaxensis HAW-EB4] gi|167353409|gb|ABZ76022.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] Length = 125 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 10/104 (9%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 ++ ++ N S P+S D D IM+IPV + + +G + I NL+ L++G V Sbjct: 23 VEFDEFSNESAPLSEDE-------VSKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSV 75 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 76 VELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 116 >gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1] gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1] Length = 174 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +G + I +L+ L++G V+ LD+ GE +D+ +N IA GE+ Sbjct: 91 NIDVILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVV 150 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 151 VVNE---RFGIRLTDVIS 165 >gi|150388449|ref|YP_001318498.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens QYMF] gi|149948311|gb|ABR46839.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens QYMF] Length = 143 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N I ++P+ + + LG +IS ++ G +I ++K VGE VDI +N Q +AKGE+ Sbjct: 60 ENISTIQDVPLSVTVELGRTVKKISEVLEFGPGTIIEVEKLVGEHVDILVNGQYVAKGEV 119 Query: 127 TIMEEDDTHFGVRVIEI 143 +++E ++G R+ EI Sbjct: 120 VVIDE---NYGTRITEI 133 >gi|89075521|ref|ZP_01161932.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89048793|gb|EAR54364.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 129 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E ++ ++ I + D IM+IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 30 EELTDETVPITDDERRKLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGES 89 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|329901243|ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium IMCC9480] gi|327549175|gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium IMCC9480] Length = 137 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 53 DIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVV 112 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ +I++ Sbjct: 113 VVND---KFGIRLTDIIS 127 >gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct] Length = 158 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 74 NLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 133 Query: 128 IMEEDDTHFGVRVIEILN 145 + E FG+R+ ++++ Sbjct: 134 AVNE---KFGIRLTDVIS 148 >gi|54294678|ref|YP_127093.1| flagellar motor switch protein FliN [Legionella pneumophila str. Lens] gi|53754510|emb|CAH15994.1| Flagellar motor switch protein FliN [Legionella pneumophila str. Lens] Length = 109 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 16/109 (14%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 N +E L Q N P++ D N + +LI++IPV + + +G M I NL+ Sbjct: 7 NTTEQLNQGN-------PLNPDPGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQ 53 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 L++G ++ LD+ G+ +D+ +N +A GE+ ++ + FGVR+ +I+ Sbjct: 54 LNQGGIVALDRLAGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIV 99 >gi|262404471|ref|ZP_06081026.1| flagellar motor switch protein FliN [Vibrio sp. RC586] gi|262349503|gb|EEY98641.1| flagellar motor switch protein FliN [Vibrio sp. RC586] Length = 136 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 7/104 (6%) Query: 46 DVDNI-SEPISSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 DVD I + P+ N S D D IM+IPV + + +G + I NL+ L++G V Sbjct: 27 DVDEILAAPLEELKNTAPAISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSV 86 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 87 VELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|188592198|ref|YP_001796796.1| flim: flagellar motor switching and energizing component. flin/mopa/spao family. [Cupriavidus taiwanensis LMG 19424] gi|170938572|emb|CAP63559.1| FliM: flagellar motor switching and energizing component. fliN/mopA/spaO family [Cupriavidus taiwanensis LMG 19424] Length = 148 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + ++I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 64 DIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVV 123 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ +I+ Sbjct: 124 VVND---KFGIRLTDIIT 138 >gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] gi|151280202|gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] Length = 139 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 4/85 (4%) Query: 62 LEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 L+ T N D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N Sbjct: 48 LKTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCL 107 Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145 IA+GE+ ++ + FG+R+ +I+ Sbjct: 108 IAQGEVVVVND---KFGIRLTDIIT 129 >gi|209966468|ref|YP_002299383.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|209959934|gb|ACJ00571.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 105 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 50/73 (68%), Gaps = 3/73 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I+++PV++ + LG M+IS L+ L DV+ L++ VGE VD+ +N++ +A+GE+ ++ Sbjct: 20 ILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVNDRLVARGELVVV-- 77 Query: 132 DDTHFGVRVIEIL 144 D G+ ++E++ Sbjct: 78 -DGRLGLTIVELM 89 >gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] Length = 112 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DL+M++PV + + +G M I L+ L+ G V+T D+ V E +D+ +N +A+GE+ Sbjct: 28 DLDLLMDVPVYLTVEVGRRRMTIKELLALASGSVVTFDRSVTEPMDLMVNGTLVARGEVV 87 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 E FG+R++++++ + Sbjct: 88 SAE---GQFGLRLVDVVSPK 104 >gi|256830497|ref|YP_003159225.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM 4028] gi|256579673|gb|ACU90809.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM 4028] Length = 188 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I++IP+++ LGS + I+ L+ L +G VI L+K GE ++I +N + +A+GE Sbjct: 105 DLDFILDIPLEVSAQLGSTKLLINELLQLGQGSVIELNKLAGEPLEILVNGKLVARGEAV 164 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+ +I++ Sbjct: 165 VINE---KFGVRLTDIIS 179 >gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073] gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073] Length = 124 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T +F I ++P++++ LG M + +++L G VI LDK GE VD+ +N+ +AKGE Sbjct: 41 TADFKRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGE 100 Query: 126 ITIMEEDDTHFGVRV 140 + ++ + FGVR+ Sbjct: 101 VVVI---NDAFGVRI 112 >gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2] gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2] Length = 352 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 9/119 (7%) Query: 33 SPTNNSEMLIQKNDVDNISEPI--SSDSNNILEKST----DNFDLIMNIPVKMQIILGSC 86 +P + + K + + S+P+ S + L S DN DLI+++P+ + ++LG Sbjct: 228 TPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVNDGDNLDLILDVPLDLSVVLGRS 287 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I ++++ + G VI L+K E ++I +N + IA GE+ ++ E +FGVR+ IL+ Sbjct: 288 KKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVINE---NFGVRITNILS 343 >gi|73539703|ref|YP_300070.1| Type III secretion system outer membrane O protein [Ralstonia eutropha JMP134] gi|72123040|gb|AAZ65226.1| Type III secretion system outer membrane O protein [Ralstonia eutropha JMP134] Length = 142 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + ++I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 58 DIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVV 117 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ +I+ Sbjct: 118 VVND---KFGIRLTDIIT 132 >gi|83647848|ref|YP_436283.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] gi|83635891|gb|ABC31858.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] Length = 172 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 88 DLDVILDIPVTISMEVGNTQIAIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 147 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 148 MVNE---KFGIRLTDVIS 162 >gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC2047] Length = 132 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D+I++IPV + + +G+ + I NL+ L+KG VI LD+ GE +D+ +N IA GE+ + Sbjct: 50 LDVILDIPVTVSMEVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGEVVV 109 Query: 129 MEEDDTHFGVRVIEILN 145 + E FG+R+ ++++ Sbjct: 110 VNE---KFGIRLTDVVS 123 >gi|116694516|ref|YP_728727.1| flagellar motor switch protein/type III secretory pathway protein [Ralstonia eutropha H16] gi|113529015|emb|CAJ95362.1| flagellar motor switch protein/type III secretory pathway protein [Ralstonia eutropha H16] Length = 149 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + ++I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 65 DIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVV 124 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ +I+ Sbjct: 125 VVND---KFGIRLTDIIT 139 >gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17029] gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17029] Length = 98 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R +I+ + Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92 >gi|52842018|ref|YP_095817.1| flagellar motor switch protein FliN [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|296107382|ref|YP_003619082.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila 2300/99 Alcoy] gi|52629129|gb|AAU27870.1| flagellar motor switch protein FliN [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|295649283|gb|ADG25130.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila 2300/99 Alcoy] gi|307610491|emb|CBX00063.1| flagellar motor switch protein FliN [Legionella pneumophila 130b] Length = 109 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 9/97 (9%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 N P++ D N + +LI++IPV + + +G M I NL+ L++G ++ LD+ Sbjct: 13 NQGNPLNPDPGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 66 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 G+ +D+ +N +A GE+ ++ + FGVR+ +I++ Sbjct: 67 GDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVS 100 >gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] Length = 115 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E S +S + K + +PV++ + L S M + L + +GDV+ LD+ VGE Sbjct: 17 EFFSENSASAQPKPKKDMSFFHQLPVQVTLELASAEMSLGELTQMGEGDVVALDRMVGEP 76 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +N + +GE+ E + +GVR++E+ Sbjct: 77 LDIRVNGALLGRGEVV---EVNGRYGVRLLEV 105 >gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str. Corby] gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str. Corby] Length = 109 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 9/97 (9%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 N P++ D N + +LI++IPV + + +G M I NL+ L++G ++ LD+ Sbjct: 13 NQGNPLNPDPGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 66 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 G+ +D+ +N +A GE+ ++ + FGVR+ +I++ Sbjct: 67 GDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVS 100 >gi|54308124|ref|YP_129144.1| flagellar motor switch protein [Photobacterium profundum SS9] gi|46912550|emb|CAG19342.1| putative polar flagellar switch protein FliN [Photobacterium profundum SS9] Length = 129 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 10/95 (10%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S PIS D D IM+IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 36 STPISDDERR-------KLDTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAGE 88 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 89 PLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|289208345|ref|YP_003460411.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix] gi|288943976|gb|ADC71675.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix] Length = 203 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++PV + + +G + I NL+ L++G V+ LD+ GE++D+ +N IA GE+ Sbjct: 120 NLQMVLDVPVTISMEIGRSRIPIRNLLQLNQGSVVELDRLAGEALDVLVNGTLIAHGEVV 179 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 180 VVNE---KFGIRLTDVIS 194 >gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans] gi|55977143|gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans] gi|133738988|emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans] Length = 141 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 4/88 (4%) Query: 58 SNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 S L+ T N D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ + Sbjct: 46 SGGDLKTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLV 105 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEIL 144 N IA+GE+ ++ + FG+R+ +I+ Sbjct: 106 NGCLIAQGEVVVVND---KFGIRLTDII 130 >gi|254440105|ref|ZP_05053599.1| flagellar motor switch protein FliN [Octadecabacter antarcticus 307] gi|198255551|gb|EDY79865.1| flagellar motor switch protein FliN [Octadecabacter antarcticus 307] Length = 98 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T+ + NI V+M I +G + IS L+ L++G V+ L++ GE +DI +N KIAKGE Sbjct: 14 TEKLRALENIEVEMSIEVGRTDISISELLRLNEGSVVELNRLAGEPLDILVNGTKIAKGE 73 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + ++ E FG+R EI++ + Sbjct: 74 VVMVGE---RFGIRFSEIVDPE 92 >gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1] gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N] gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1] gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N] Length = 98 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R +I+ + Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92 >gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17025] gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17025] Length = 98 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R +I+ + Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92 >gi|118581838|ref|YP_903088.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM 2379] gi|118504548|gb|ABL01031.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM 2379] Length = 99 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D I++IP+++ + LG + + +++ L++G V+ L K GE +DI +N++ +A+GE Sbjct: 16 NLDFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDIFVNSKLVARGEAV 75 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+++I++ Sbjct: 76 VVNE---KFGVRLVDIVS 90 >gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus ATCC 12755] gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus ATCC 12755] Length = 352 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 DN DLI+++P+ + ++LG I ++++ + G VI L+K E ++I +N + IA GE+ Sbjct: 268 DNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEV 327 Query: 127 TIMEEDDTHFGVRVIEILN 145 ++ E +FGVR+ IL+ Sbjct: 328 VVINE---NFGVRITNILS 343 >gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6] gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6] Length = 153 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + ++ +LI++IPV++ + LG + I N++ L++G V+ LD GE +D+ +N IA+ Sbjct: 63 QPGNDINLILDIPVQLTVELGRTRIPIKNILQLAQGSVVELDALAGEPMDVLVNGYLIAQ 122 Query: 124 GEITIMEEDDTHFGVRVIEIL 144 GE+ ++ + FG+R+ +I+ Sbjct: 123 GEVVVVND---KFGIRLTDIV 140 >gi|91792692|ref|YP_562343.1| flagellar motor switch protein [Shewanella denitrificans OS217] gi|91714694|gb|ABE54620.1| Flagellar motor switch FliN [Shewanella denitrificans OS217] Length = 127 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ + Sbjct: 33 DSRPITKEEAAKLDSILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 92 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N IA GE+ ++ + FG+R+ ++++ Sbjct: 93 NGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1] gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1] Length = 190 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + DL+M+IP+++ + +GS + + ++ L+ +++ LDK + + VD+ +N + IAKGE+ Sbjct: 102 EKLDLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGEL 161 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 +E+ HFG+++ I+ Q Sbjct: 162 YTVED---HFGIKITSIITVQ 179 >gi|113969633|ref|YP_733426.1| flagellar motor switch protein [Shewanella sp. MR-4] gi|114046863|ref|YP_737413.1| flagellar motor switch protein [Shewanella sp. MR-7] gi|113884317|gb|ABI38369.1| flagellar motor switch protein FliN [Shewanella sp. MR-4] gi|113888305|gb|ABI42356.1| flagellar motor switch protein FliN [Shewanella sp. MR-7] Length = 124 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ + Sbjct: 30 DSQPISKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLDVMV 89 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 NGTLIAHGEVVVVND---KFGIRLTDVIS 115 >gi|189426341|ref|YP_001953518.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ] gi|189422600|gb|ACD96998.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ] Length = 99 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E+ N + I++IP+++ + LG + + +++ L++G V+ L K GE +DI +N++ +A Sbjct: 11 EQEKKNLEFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDIFVNSKLVA 70 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE ++ E FGVR+++I++ Sbjct: 71 RGEAVVVNE---KFGVRLVDIVS 90 >gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. campestris str. B100] gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. campestris] Length = 112 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 55/84 (65%), Gaps = 4/84 (4%) Query: 63 EKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + +TD N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N I Sbjct: 23 QDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLI 82 Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145 A GE+ ++ + FG+R+ ++++ Sbjct: 83 AHGEVVVIND---RFGIRLTDVVS 103 >gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1] gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1] Length = 137 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 66/104 (63%), Gaps = 6/104 (5%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 ++++D+ P ++ L K N +L+M++P+++ + LGS QI +L+ L+KG ++ Sbjct: 33 RDEMDHAENPFDVSTDGDLPK---NLELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVE 89 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L+K + ++I +N++ +A GE+ ++++ G+R+ +I++ + Sbjct: 90 LEKEADDPLEIYVNDRLLAYGEVVMIKD---KLGIRITDIVSLK 130 >gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30] gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10] gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20] gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30] gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10] gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20] Length = 352 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 DN DLI+++P+ + ++LG I ++++ + G VI L+K E ++I +N + IA GE+ Sbjct: 268 DNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEV 327 Query: 127 TIMEEDDTHFGVRVIEILN 145 ++ E +FGVR+ IL+ Sbjct: 328 VVINE---NFGVRITNILS 343 >gi|114562368|ref|YP_749881.1| flagellar motor switch protein [Shewanella frigidimarina NCIMB 400] gi|114333661|gb|ABI71043.1| flagellar motor switch protein FliN [Shewanella frigidimarina NCIMB 400] Length = 127 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ + Sbjct: 33 DSRPITKEEAAKLDGILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 92 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N IA GE+ ++ + FG+R+ ++++ Sbjct: 93 NGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a] Length = 414 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 54/81 (66%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N L+M++P+++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++ Sbjct: 328 ENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDV 387 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 ++ D +F VR+ EI+ ++ Sbjct: 388 VVI---DDNFAVRITEIVKSK 405 >gi|291613060|ref|YP_003523217.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus ES-1] gi|291583172|gb|ADE10830.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus ES-1] Length = 135 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++ D+I++IPVK+ + LG M I NL+ L++G V+ L GE +D+ IN IA+G Sbjct: 48 AHNDLDMILDIPVKLTVELGHTKMPIKNLLQLAQGSVVELAGLAGEPLDVLINGFLIAQG 107 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + G+R+ +I+ Sbjct: 108 EVVVVND---KLGIRLTDIIT 125 >gi|120598258|ref|YP_962832.1| flagellar motor switch protein [Shewanella sp. W3-18-1] gi|146293664|ref|YP_001184088.1| flagellar motor switch protein [Shewanella putrefaciens CN-32] gi|120558351|gb|ABM24278.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] gi|145565354|gb|ABP76289.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] gi|319427063|gb|ADV55137.1| flagellar motor switch protein FliN [Shewanella putrefaciens 200] Length = 127 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ + Sbjct: 33 DSQPISKADAAKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 92 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N IA GE+ ++ + FG+R+ ++++ Sbjct: 93 NGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC 19865] gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC 19865] Length = 112 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 4/82 (4%) Query: 65 STD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +TD N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA Sbjct: 25 ATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAH 84 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ ++++ Sbjct: 85 GEVVVIND---RFGIRLTDVVS 103 >gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893] gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893] Length = 172 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 88 DLDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 147 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 148 MVNE---KFGIRLTDVIS 162 >gi|24374732|ref|NP_718775.1| flagellar motor switch protein [Shewanella oneidensis MR-1] gi|24349392|gb|AAN56219.1|AE015759_11 flagellar motor switch protein FliN [Shewanella oneidensis MR-1] Length = 124 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ + Sbjct: 30 DSQPISKAEAAKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMV 89 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 NGTLIAHGEVVVVND---KFGIRLTDVIS 115 >gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484] gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484] Length = 125 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 7/89 (7%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 DS ++ EK + IP+++++++G +++ L++L G V+ LD V VDI Sbjct: 34 GDSQDLSEKVRR----FLEIPLELEVVIGRTTLKLGELLHLGPGSVVELDNHVESPVDIL 89 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEIL 144 +N + +AKGEI ++E+ FGVR+ +I+ Sbjct: 90 VNGKLVAKGEIVVVEDK---FGVRITDII 115 >gi|218672164|ref|ZP_03521833.1| flagellar motor switch protein [Rhizobium etli GR56] Length = 142 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 37/45 (82%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 T NF++IM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE Sbjct: 97 TSNFEMIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGE 141 >gi|260222422|emb|CBA31970.1| Flagellar motor switch protein fliN [Curvibacter putative symbiont of Hydra magnipapillata] Length = 162 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 12/116 (10%) Query: 38 SEMLIQKNDVDNISE-----PISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCM 88 +E L+++ D + P+S D+ D + +++++IPV++ + LG + Sbjct: 38 AEALLEQKSSDGAGDAAPGGPLSGDTPKPFTSGGDGHVNDINMVLDIPVQLSVELGRTKV 97 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 I +++ L +G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++ Sbjct: 98 PIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVV 150 >gi|84514808|ref|ZP_01002171.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis SKA53] gi|84510967|gb|EAQ07421.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis SKA53] Length = 102 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 TD + NI V+M + +G + IS L+ L++G V+ LD+ GE +DI +N IAKGE Sbjct: 18 TDKLRALENIEVEMSVEVGRTEISISELLRLNEGSVVELDRLAGEPLDILVNGTLIAKGE 77 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 I ++ E FG+R +I++ + Sbjct: 78 IVMVGE---RFGIRFSDIVDPE 96 >gi|94314218|ref|YP_587427.1| flagellar motor switch FliN [Cupriavidus metallidurans CH34] gi|93358070|gb|ABF12158.1| Flagellar motor switch FliN [Cupriavidus metallidurans CH34] Length = 156 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ Sbjct: 75 MILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVN 134 Query: 131 EDDTHFGVRVIEILN 145 + FG+R+ +I+ Sbjct: 135 D---KFGIRLTDIIT 146 >gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614] gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614] Length = 246 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 PL+ ++V + E L+ D + P +S + ++ +++ + +++ + +G Sbjct: 126 PLEGSDVVAALLVPEALLAHPADDTPALPTTSAAAPTGDRR--GIEMLHGVDMEVTVEIG 183 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 M + L++L+ G V+ LD+ G D+ +N + IA+GE+ +++ED FG+R+ EI+ Sbjct: 184 RARMTVRELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDED---FGLRITEIV 240 Query: 145 N 145 Sbjct: 241 T 241 >gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175] Length = 118 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 D SE S +N K +NF +PV++ + L S M + L + +GDVI LD+ Sbjct: 17 DIFSESAFSKPDNRKVKKNNNF--FQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRM 74 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 VGE +DI +N + +GE+ E +GVR++EI Sbjct: 75 VGEPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 107 >gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium BAC17H8] Length = 110 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D+ S +N L+ NI V + + +G ++I +L+ L++G VI LD+ G+ +DI Sbjct: 17 DAETAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGSVIELDRLAGDPLDILA 76 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 N IAKGE+ ++ E FG+R EI++ Sbjct: 77 NGTMIAKGEVVMVGE---RFGIRFTEIVD 102 >gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 112 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ ++++ Sbjct: 89 VVND---RFGIRLTDVVS 103 >gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 112 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ ++++ Sbjct: 89 VIND---RFGIRLTDVVS 103 >gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118] gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118] Length = 112 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ ++++ Sbjct: 89 VIND---RFGIRLTDVVS 103 >gi|288942629|ref|YP_003444869.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM 180] gi|288898001|gb|ADC63837.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM 180] Length = 148 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 4/85 (4%) Query: 63 EKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 E ++D N ++++++PV + + +G + I NL+ L++G V+ LD+ GE +D+ +N I Sbjct: 59 EPTSDVNLNMVLDVPVTISMEIGRTRIPIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLI 118 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 A GE+ ++ E FG+R+ ++++ Sbjct: 119 AHGEVVVVNE---KFGIRLTDVISP 140 >gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS155] gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS155] Length = 118 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 D SE S +N K +NF +PV++ + L S M + L + +GDVI LD+ Sbjct: 17 DIFSESAFSKPDNRKVKKNNNF--FQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRM 74 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 VGE +DI +N + +GE+ E +GVR++EI Sbjct: 75 VGEPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 107 >gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC 35937] gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC 35937] Length = 112 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ ++++ Sbjct: 89 VIND---RFGIRLTDVVS 103 >gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 112 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ ++++ Sbjct: 89 VIND---RFGIRLTDVVS 103 >gi|269836615|ref|YP_003318843.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM 20745] gi|269785878|gb|ACZ38021.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM 20745] Length = 144 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + + ++ V++ LG+ MQI +++ L G V+ L++ GE VDI +N IA+GE+ Sbjct: 62 SIEFLRDVEVELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVV 121 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++E F VRV+EI+ + Sbjct: 122 VVDEK---FAVRVVEIVPPE 138 >gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 416 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N DLI ++ +++ + LG I+ +++ G V+ LDK VGES+DI N +KIA GE+ Sbjct: 333 ENMDLIKDVMLQITVELGKTVKPINEILDFKPGSVLELDKVVGESLDILANGKKIATGEV 392 Query: 127 TIMEEDDTHFGVRVIEIL 144 +++E ++G+R+ +I+ Sbjct: 393 VVIDE---NYGIRITDIV 407 >gi|170725981|ref|YP_001760007.1| flagellar motor switch protein [Shewanella woodyi ATCC 51908] gi|169811328|gb|ACA85912.1| flagellar motor switch protein FliN [Shewanella woodyi ATCC 51908] Length = 129 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA Sbjct: 41 EEDVAKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIA 100 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ ++++ Sbjct: 101 HGEVVVVND---KFGIRLTDVIS 120 >gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans SRS30216] gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans SRS30216] Length = 249 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 DL+ ++ + + + LG M + +L+ L+ G V+ LD+ G D+ +N Q IA+GE+ Sbjct: 170 TMDLLRDVQMDVTVELGRTSMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVV 229 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +++ED + +R+ EI+ + Sbjct: 230 VVDED---YAIRITEIVTPE 246 >gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118] gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118] Length = 139 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 75/133 (56%), Gaps = 13/133 (9%) Query: 20 MHID-NPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKS---TDNFDLI 72 M ID P +D ++ + +E L+++ + +EP ++ D+++ S + + + Sbjct: 1 MAIDEKPAEDDGMA---DWAEALLEQKSSEPTAEPGGVLAGDTSHSFSSSDAPISDINRV 57 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++IPV++ + LG + I +++ L +G V+ LD GE +D+ +N IA+GE+ ++ + Sbjct: 58 LDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND- 116 Query: 133 DTHFGVRVIEILN 145 FG+R+ +++ Sbjct: 117 --KFGIRLTDVVT 127 >gi|88858100|ref|ZP_01132742.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] gi|88819717|gb|EAR29530.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] Length = 131 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E +S+ I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 32 EELSNQPAEITQEEKRKLDTILDIPVTISMEVGRSKISIRNLLQLNQGSVVELDRVAGEP 91 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 92 LDVLVNGTLIAHGEVVVV---NDKFGIRLTDVIS 122 >gi|254461964|ref|ZP_05075380.1| flagellar motor switch protein FliN [Rhodobacterales bacterium HTCC2083] gi|206678553|gb|EDZ43040.1| flagellar motor switch protein FliN [Rhodobacteraceae bacterium HTCC2083] Length = 99 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D + NI V+M I +G + I+NL+ L++G V+ LD+ GE +DI +N IAKGE+ Sbjct: 16 DKLRALENIEVQMSIEVGRTEITIANLLRLNEGSVVELDRLAGEPLDILVNGTMIAKGEV 75 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 ++ E FG+R +I++ + Sbjct: 76 VMVGE---RFGIRFSDIVDPE 93 >gi|74317626|ref|YP_315366.1| flagellar motor switch/type III secretory pathway protein FliN [Thiobacillus denitrificans ATCC 25259] gi|74057121|gb|AAZ97561.1| flagellar motor switch/type III secretory pathway protein FliN [Thiobacillus denitrificans ATCC 25259] Length = 132 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 ++ D I++IPV + + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE Sbjct: 46 ANDIDFILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGE 105 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + ++ + FGVR+ +I+ Sbjct: 106 VVVVND---KFGVRLTDIIT 122 >gi|71282178|ref|YP_268252.1| flagellar motor switch protein [Colwellia psychrerythraea 34H] gi|71147918|gb|AAZ28391.1| flagellar motor switch protein FliN [Colwellia psychrerythraea 34H] Length = 131 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E ++ D I D I++IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 32 EELTPDDAPITGDEKRKLDAILDIPVTISMEVGRSNISIRNLLQLNQGSVVELDRVAGES 91 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 92 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVVS 122 >gi|285018172|ref|YP_003375883.1| flagellar motor switch/type III secretory pathway protein flin [Xanthomonas albilineans GPE PC73] gi|283473390|emb|CBA15895.1| probable flagellar motor switch/type III secretory pathway protein flin [Xanthomonas albilineans] Length = 112 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 59/100 (59%), Gaps = 6/100 (6%) Query: 49 NISEPISSDS---NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 N +EP +S + E + N D+I+++P+ + + +G + I NL+ L++G V+ L+ Sbjct: 7 NQAEPAQFESLQQETVAETNDLNLDVILDVPITLSLEVGRSRIPIRNLLQLNQGSVVELE 66 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + GE +D+ +N IA GE+ + + FGVR+ ++++ Sbjct: 67 RGAGEPLDVYVNGTLIAHGEVVTIND---RFGVRLTDVVS 103 >gi|325273550|ref|ZP_08139780.1| flagellar motor switch protein [Pseudomonas sp. TJI-51] gi|324101310|gb|EGB98926.1| flagellar motor switch protein [Pseudomonas sp. TJI-51] Length = 82 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ Sbjct: 1 DVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVV 60 Query: 130 EEDDTHFGVRVIEILN 145 E FG+R+ ++++ Sbjct: 61 NE---KFGIRLTDVIS 73 >gi|322421723|ref|YP_004200946.1| flagellar motor switch protein FliN [Geobacter sp. M18] gi|320128110|gb|ADW15670.1| flagellar motor switch protein FliN [Geobacter sp. M18] Length = 101 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D IM+IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+GE Sbjct: 18 NLDFIMDIPLQLTVELGRTKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAV 77 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+++I++ Sbjct: 78 VVND---KFGIRLLDIVS 92 >gi|197120187|ref|YP_002140614.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem] gi|253702496|ref|YP_003023685.1| flagellar motor switch protein FliN [Geobacter sp. M21] gi|197089547|gb|ACH40818.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem] gi|251777346|gb|ACT19927.1| flagellar motor switch protein FliN [Geobacter sp. M21] Length = 101 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D IM+IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+GE Sbjct: 18 NLDFIMDIPLQLTVELGRSKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAV 77 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+++I++ Sbjct: 78 VVND---KFGIRLLDIVS 92 >gi|148266211|ref|YP_001232917.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4] gi|146399711|gb|ABQ28344.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4] Length = 103 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 63/98 (64%), Gaps = 7/98 (7%) Query: 50 ISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 ++E I SD NN LE N + I++IP+++ + LG + + +++ L++G V+ L K Sbjct: 2 VNEKIDSDELNNNSLE--VKNLEFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKL 59 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N++ +A+GE ++ + FG+R+++I++ Sbjct: 60 AGEPLDVFVNSKLVARGEAVVIND---KFGIRLVDIVS 94 >gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum deleyianum DSM 6946] gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum deleyianum DSM 6946] Length = 103 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++D + K F+ +++I V LG+ + I L+ L KG VI L+K GESV++ Sbjct: 3 AADQEYVERKLLSGFENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVEL 62 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 INN+ KGE+ + E+ + +R+ EIL+++ Sbjct: 63 YINNKIFGKGEVMVYEK---NLAIRINEILDSK 92 >gi|89068715|ref|ZP_01156101.1| Flagellar motor switch protein FliN [Oceanicola granulosus HTCC2516] gi|89045678|gb|EAR51740.1| Flagellar motor switch protein FliN [Oceanicola granulosus HTCC2516] Length = 132 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 52/77 (67%), Gaps = 2/77 (2%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + ++N+ +++ I+LG M IS L+ LS+G +I LDKR+GE VD+ ++++ +A+G++ Sbjct: 51 SIEAMLNVGLEVNIVLGRSRMPISQLLKLSRGSIIELDKRIGEPVDMIVSDRLVARGDLV 110 Query: 128 IMEEDDTHFGVRVIEIL 144 + D GV + EI+ Sbjct: 111 RV--GDNRVGVTLTEIV 125 >gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium HP15] Length = 163 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 79 DIDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 138 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 139 MVNE---KFGIRLTDVIS 153 >gi|332702323|ref|ZP_08422411.1| flagellar motor switch protein FliN [Desulfovibrio africanus str. Walvis Bay] gi|332552472|gb|EGJ49516.1| flagellar motor switch protein FliN [Desulfovibrio africanus str. Walvis Bay] Length = 181 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E++ + D I++IP+++ LG + I+ L+ L +G V+ L+K GE ++I +N + +A Sbjct: 93 EQTKRDLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVA 152 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE ++ E FG+R+ +I++ Sbjct: 153 RGEAVVINE---KFGIRLTDIIS 172 >gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfitobacterium hafniense DCB-2] gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfitobacterium hafniense DCB-2] Length = 417 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +LI+++P+++ + LG I ++ L G VI LD+ GE VD+ +N + IAK E+ Sbjct: 330 ENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLIAKCEV 389 Query: 127 TIMEEDDTHFGVRVIEILN 145 ++ E FG+R+ +I+ Sbjct: 390 VVINET---FGIRITDIVQ 405 >gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256] gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256] Length = 111 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 3/100 (3%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 DV + + +D + + NFDL+ + +++ + +GS M ++ L+ L +G VI L Sbjct: 2 TDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIEL 61 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 D+ + +DI N IAKGEI + D +G++V E++ Sbjct: 62 DRAATDLLDIYANGTLIAKGEIVSV---DGRYGIQVAEVV 98 >gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068] gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068] Length = 212 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 55/84 (65%), Gaps = 5/84 (5%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 EK+T +L+ ++ + ++I LG M + +++ L +G V+TLDK G+ VDI +N + IA Sbjct: 130 EKAT--LELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIA 187 Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146 +GE+ ++ + +F VRV E+L+ Sbjct: 188 RGEVLVLND---NFCVRVAELLSG 208 >gi|157376190|ref|YP_001474790.1| flagellar motor switch protein [Shewanella sediminis HAW-EB3] gi|157318564|gb|ABV37662.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] Length = 127 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA Sbjct: 39 EEDVAKLDSIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIA 98 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ ++++ Sbjct: 99 HGEVVVVND---KFGIRLTDVIS 118 >gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8] gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8] Length = 166 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 82 DIDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 141 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 142 MVNE---KFGIRLTDVIS 156 >gi|332994113|gb|AEF04168.1| flagellar motor switch protein [Alteromonas sp. SN2] Length = 133 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 +D I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ Sbjct: 38 TDDTPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 97 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N IA GE+ ++ + FG+R+ ++++ Sbjct: 98 VNGTLIAHGEVVVVND---KFGIRLTDVIS 124 >gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter hydrocarbonoclasticus] Length = 166 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 82 DIDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVV 141 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ ++++ Sbjct: 142 MVNE---KFGIRLTDVIS 156 >gi|149908449|ref|ZP_01897112.1| putative polar flagellar switch protein FliN [Moritella sp. PE36] gi|149808612|gb|EDM68547.1| putative polar flagellar switch protein FliN [Moritella sp. PE36] Length = 127 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E S+D N + D I++IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 28 EDFSNDDNAFSPEQQHKLDSILDIPVVISMEVGRSKISIRNLLQLNQGSVVELDRIAGEP 87 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 88 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|209695732|ref|YP_002263662.1| flagellar motor switch protein [Aliivibrio salmonicida LFI1238] gi|208009685|emb|CAQ79984.1| polar flagellar switch protein FliN [Aliivibrio salmonicida LFI1238] Length = 127 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 11/92 (11%) Query: 62 LEKSTDNF--------DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 LE++T F D I++IPV + + +G + I NL+ L++G V+ LD+ GES+D Sbjct: 30 LEETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGESLD 89 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51] gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 421 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +LI+++P+++ + LG I ++ L G VI LD+ GE VD+ +N + +AK E+ Sbjct: 334 ENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLVAKCEV 393 Query: 127 TIMEEDDTHFGVRVIEILN 145 ++ E FG+R+ +I+ Sbjct: 394 VVINET---FGIRITDIVQ 409 >gi|257095346|ref|YP_003168987.1| flagellar motor switch protein FliN [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047870|gb|ACV37058.1| flagellar motor switch protein FliN [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 145 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D+I++IPV++ + LG + I NL+ L+ G V+ LD GE +++ +N IA+GE+ + Sbjct: 62 LDMILDIPVQLAVELGRTRITIKNLLQLAHGSVVELDAMAGEPLNVFVNGTLIAQGEVVV 121 Query: 129 MEEDDTHFGVRVIEIL 144 + + FG+R+ +I+ Sbjct: 122 VND---KFGIRLTDIV 134 >gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] Length = 118 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K + +PV++ + L S M + L + +GDV+ LD+ VGE +DI +N + + Sbjct: 32 KPVKDISFFHQLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALLGR 91 Query: 124 GEITIMEEDDTHFGVRVIEI 143 GE+ E + +GVR++E+ Sbjct: 92 GEVV---EVNGRYGVRLLEV 108 >gi|262276387|ref|ZP_06054196.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] gi|262220195|gb|EEY71511.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] Length = 129 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IPV + + +G + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ + Sbjct: 47 LDAILDIPVTISMEVGRTNINIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVV 106 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 107 VND---KFGIRLTDVIS 120 >gi|298530626|ref|ZP_07018028.1| flagellar motor switch protein FliN [Desulfonatronospira thiodismutans ASO3-1] gi|298510000|gb|EFI33904.1| flagellar motor switch protein FliN [Desulfonatronospira thiodismutans ASO3-1] Length = 187 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 ++ D+ E + + D I++IP+ + LG + I+ L+ L +G VI L+K GE ++ Sbjct: 90 LTEDAKKKPEGTKRDLDFILDIPLTVTAQLGGTQLLINELLQLGQGSVIELNKLAGEPME 149 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +N + +A+GE ++ E FG+R+ +I++ Sbjct: 150 VLVNGKLVARGEAVVINE---KFGIRLTDIIS 178 >gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM 17241] gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM 17241] Length = 446 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DL+M + + + + +G +I ++++ +G VI L+K+ G VDI +N + +A+G Sbjct: 356 SNANMDLLMGVSLDVSVEIGQTKRKIKDIIDFGQGTVIELNKQAGAPVDIVVNGRLLARG 415 Query: 125 EITIMEEDDTHFGVRVIEILN 145 ++ ++ D +FGVR+ EI+ Sbjct: 416 DVVVI---DDNFGVRITEIVG 433 >gi|124516301|gb|EAY57809.1| flagellar motor switch protein FliN [Leptospirillum rubarum] gi|206603144|gb|EDZ39624.1| flagellar motor switch protein FliN [Leptospirillum sp. Group II '5-way CG'] Length = 125 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 55/82 (67%), Gaps = 3/82 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + ++ D ++++P+ + + +G+ M I +L+ L +G V+ LDK GE ++I IN++ +A+ Sbjct: 39 EPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVAR 98 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + +GVR+ +I++ Sbjct: 99 GEVVMVND---KYGVRLTDIVS 117 >gi|117919798|ref|YP_868990.1| flagellar motor switch protein [Shewanella sp. ANA-3] gi|117612130|gb|ABK47584.1| flagellar motor switch protein FliN [Shewanella sp. ANA-3] Length = 124 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 10/95 (10%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+PIS + D I++IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 31 SQPIS-------KAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGE 83 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 84 PLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115 >gi|147674715|ref|YP_001217647.1| flagellar motor switch protein [Vibrio cholerae O395] gi|146316598|gb|ABQ21137.1| flagellar motor switch protein FliN [Vibrio cholerae O395] gi|227014021|gb|ACP10231.1| flagellar motor switch protein FliN [Vibrio cholerae O395] Length = 138 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 ++ N + PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD Sbjct: 40 ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 92 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + ES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 93 RIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 129 >gi|78224291|ref|YP_386038.1| flagellar motor switch FliN [Geobacter metallireducens GS-15] gi|78195546|gb|ABB33313.1| Flagellar motor switch FliN [Geobacter metallireducens GS-15] Length = 101 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E T N + I++IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A Sbjct: 13 ELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVA 72 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE ++ E FG+R+++I++ Sbjct: 73 RGEAVVVNE---KFGIRLVDIVS 92 >gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] Length = 118 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K + +PV++ + L S M + L + +GDV+ LD+ VGE +DI +N + + Sbjct: 32 KPVKDMSFFHQLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPLDIRVNGALLGR 91 Query: 124 GEITIMEEDDTHFGVRVIEI 143 GE+ E + +GVR++E+ Sbjct: 92 GEVV---EVNGRYGVRLLEV 108 >gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] Length = 118 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + K + +PV + + L S M + L + +GDV+ LD+ VGE +DI Sbjct: 24 SHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPLDIR 83 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEI 143 +N + +GE+ E + +GVR++E+ Sbjct: 84 VNGALLGRGEVV---EVNGRYGVRLLEV 108 >gi|294140211|ref|YP_003556189.1| flagellar motor switch protein FliN [Shewanella violacea DSS12] gi|293326680|dbj|BAJ01411.1| flagellar motor switch protein FliN [Shewanella violacea DSS12] Length = 127 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ + Sbjct: 45 LDTIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVV 104 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 105 VND---KFGIRLTDVIS 118 >gi|332140590|ref|YP_004426328.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550612|gb|AEA97330.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 135 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 +D I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ Sbjct: 40 TDDAPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 99 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N IA GE+ ++ + FG+R+ ++++ Sbjct: 100 VNGTLIAHGEVVVVND---KFGIRLTDVIS 126 >gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa] gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa] Length = 284 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 54/79 (68%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++ D ++++P+ + + +G+ M I +L+ L +G V+ LDK GE ++I IN++ +A+GE+ Sbjct: 201 ESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEV 260 Query: 127 TIMEEDDTHFGVRVIEILN 145 ++ + +GVR+ +I++ Sbjct: 261 VMVND---KYGVRLTDIVS 276 >gi|303246796|ref|ZP_07333073.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans JJ] gi|302491813|gb|EFL51693.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans JJ] Length = 202 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I++IP+ + LG + I+ L+ L +G VI L+K GE ++I +N + +A+GE Sbjct: 119 DLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEIYVNGKLVARGEAV 178 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+ +I++ Sbjct: 179 VINE---KFGVRLTDIIS 193 >gi|262167484|ref|ZP_06035190.1| flagellar motor switch protein FliN [Vibrio cholerae RC27] gi|262024056|gb|EEY42751.1| flagellar motor switch protein FliN [Vibrio cholerae RC27] Length = 136 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 ++ N + PI+ D D IM+IPV + + +G + I NL+ L++G V+ LD Sbjct: 38 ELKNTAPPITDDERR-------KLDTIMDIPVTISMEVGRSKISIRNLLQLNQGSVVELD 90 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + ES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 91 RIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|59712451|ref|YP_205227.1| flagellar motor switch protein [Vibrio fischeri ES114] gi|197335660|ref|YP_002156670.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11] gi|59480552|gb|AAW86339.1| flagellar motor switch component FliN [Vibrio fischeri ES114] gi|197317150|gb|ACH66597.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11] Length = 129 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E D I++IPV + + +G + I NL+ L++G V+ LD+ GES+D+ +N IA Sbjct: 41 EDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIA 100 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ ++++ Sbjct: 101 HGEVVVVND---KFGIRLTDVIS 120 >gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter desulfuricans SSM1] gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter desulfuricans SSM1] Length = 292 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S N DL++++ + + + +GS M + +++ L G +I L++ E V++ +NN+ IA+G Sbjct: 205 SGGNIDLLLDVEIPVSVKIGSTKMYLKDILELGPGKIIELEEYADEPVELLVNNKVIARG 264 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ D +FG+R+ EI++ Sbjct: 265 EVVVV---DGYFGLRIQEIVS 282 >gi|119775424|ref|YP_928164.1| flagellar motor switch protein [Shewanella amazonensis SB2B] gi|119767924|gb|ABM00495.1| flagellar motor switch protein FliN [Shewanella amazonensis SB2B] Length = 124 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 10/95 (10%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 ++P+SS+ D I++IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 31 TKPLSSEE-------AAKLDAILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGE 83 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 84 PLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115 >gi|239909253|ref|YP_002955995.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1] gi|239799120|dbj|BAH78109.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1] Length = 186 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I++IP+ + LG + I+ L+ L +G VI L+K GE ++I +N + +A+GE Sbjct: 103 DLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEIYVNGKLVARGEAV 162 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+ +I++ Sbjct: 163 VINE---KFGVRLTDIIS 177 >gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum nigrificans DSM 574] gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum nigrificans DSM 574] Length = 390 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +LI++IP+K+ ++LG I +++ ++ G V+ LD E V+I +N +A GE+ Sbjct: 306 NLELILDIPLKVSVVLGRTKRPIKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVV 365 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E +FGVR+ I++ Sbjct: 366 VVNE---NFGVRITNIIS 380 >gi|332524238|ref|ZP_08400464.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2] gi|332107573|gb|EGJ08797.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2] Length = 144 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S ++ ++I++IPV++ + LG + I +++ L++G V+ LD GE +D+ +N IA+G Sbjct: 56 SGNDINMILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQG 115 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + FG+R+ +I+ Sbjct: 116 EVVVVND---KFGIRLTDIVT 133 >gi|239997092|ref|ZP_04717616.1| flagellar motor switch protein [Alteromonas macleodii ATCC 27126] Length = 135 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 +D I ++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ Sbjct: 40 TDDAPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDVL 99 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N IA GE+ ++ + FG+R+ ++++ Sbjct: 100 VNGTLIAHGEVVVVND---KFGIRLTDVIS 126 >gi|222053614|ref|YP_002535976.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32] gi|221562903|gb|ACM18875.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32] Length = 100 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D I++IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+GE Sbjct: 17 NLDFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAGEPLDVFVNSKLVARGEAV 76 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+++I++ Sbjct: 77 VI---NDKFGIRLVDIVS 91 >gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC 51333] gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC 51333] Length = 250 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PI+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G + Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N + IA+GEI +++E+ +G+R+ EI++ Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240 >gi|283853449|ref|ZP_06370693.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B] gi|283571169|gb|EFC19185.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B] Length = 190 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I++IP+ + LG + I+ L+ L +G VI L+K GE ++I +N + +A+GE Sbjct: 107 DLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEIYVNGKLVARGEAV 166 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+ +I++ Sbjct: 167 VINE---KFGVRLTDIIS 181 >gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65] gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65] Length = 185 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ + Sbjct: 103 LDVILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVM 162 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 163 V---NDKFGIRLTDVIS 176 >gi|317051534|ref|YP_004112650.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] gi|316946618|gb|ADU66094.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] Length = 330 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++I + + I +GS + + +L+ L G ++ LDK+ G+ V++ +N + IA+GE+ Sbjct: 246 NIEMLLDIDLAVIIRIGSTKIYLKDLLKLGSGSIVELDKKAGDPVELVVNKKVIARGEVV 305 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ D +FG+R+ EIL+ Sbjct: 306 VI---DANFGLRINEILS 320 >gi|23013050|ref|ZP_00053002.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magnetotacticum MS-1] Length = 94 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 DN + + ++ V++ +LG+ + I+ L+ L +G V+ LD++V + VD+ +N +++ + E+ Sbjct: 15 DNREAVYDVSVELSAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKRVCRAEV 74 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++E+ H V + E+L Sbjct: 75 VVVED---HLAVTITEVL 89 >gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 250 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PI+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G + Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N + IA+GEI +++E+ +G+R+ EI++ Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240 >gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum marinum IMCC1322] gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum marinum IMCC1322] Length = 112 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 4/94 (4%) Query: 55 SSDSNNILEK-STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 ++S I E+ S +N ++ NI V + + +GS ++I +L+ L++G VI LD+ G+ +D Sbjct: 16 GAESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVIELDRLAGDPLD 75 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I N IAKGE+ ++ E FG+R EI+ + Sbjct: 76 ILANGTMIAKGEVVMVGE---RFGIRFSEIVAPE 106 >gi|331005447|ref|ZP_08328826.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989] gi|330420723|gb|EGG95010.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989] Length = 104 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 64/105 (60%), Gaps = 7/105 (6%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 EM + K ++ +++ + S +N+L N D++ ++ +KMQ+ LG +Q+ L+ + + Sbjct: 5 EMSVSKAELKTLTQELLS-GDNLL---AGNIDVLKDLKIKMQVSLGETEIQVDKLMTMKE 60 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G V+ LD+ +DI IN + +A+G + ++++D FGV++ EI Sbjct: 61 GSVVKLDREANSPLDIFINGKLVARGVMVVVDDD---FGVQITEI 102 >gi|323700137|ref|ZP_08112049.1| flagellar motor switch protein FliN [Desulfovibrio sp. ND132] gi|323460069|gb|EGB15934.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans ND132] Length = 183 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I++IP+++ LG + I+ L+ L +G V+ L+K GE ++I +N + +A+GE Sbjct: 100 DLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAV 159 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ +I++ Sbjct: 160 VINE---KFGIRLTDIIS 174 >gi|147678413|ref|YP_001212628.1| flagellar motor switch/type III secretory pathway protein [Pelotomaculum thermopropionicum SI] gi|146274510|dbj|BAF60259.1| flagellar motor switch/type III secretory pathway protein [Pelotomaculum thermopropionicum SI] Length = 126 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 3/74 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++ +++ + LG M++ ++ L +G VI LDK +GE+V++ +N Q+ A+GE+ ++ + Sbjct: 47 DVQIEISVELGQTVMKVREVLGLEQGSVIRLDKAIGEAVEVVLNEQRFARGEVVVI---N 103 Query: 134 THFGVRVIEILNAQ 147 FGVR+ I Q Sbjct: 104 DSFGVRITSINRVQ 117 >gi|327254532|gb|EGE66148.1| surface presentation of antigens family protein [Escherichia coli STEC_7v] Length = 123 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 60/101 (59%), Gaps = 5/101 (4%) Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +DV +++P +D+ + ++ +D+ L+ IPV + + + S + +++L+N+ VI Sbjct: 16 DDVAPVTKPADADTLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113 >gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 250 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PI+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G + Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N + IA+GEI +++E+ +G+R+ EI++ Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240 >gi|307824487|ref|ZP_07654712.1| flagellar motor switch protein FliN [Methylobacter tundripaludum SV96] gi|307734471|gb|EFO05323.1| flagellar motor switch protein FliN [Methylobacter tundripaludum SV96] Length = 126 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 43 NLDVILDVPVTISMEIGRTQINIRNLLQLNQGSVVELERFAGEPLDVLVNGTLIAHGEVV 102 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + FG+R+ ++++ Sbjct: 103 VIND---KFGIRLTDVIS 117 >gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC 43063] gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC 43063] Length = 250 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 4/93 (4%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PI+ S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G + Sbjct: 152 PIT-QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAA 210 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N + IA+GEI +++E+ +G+R+ EI++ Sbjct: 211 DVMVNGRLIARGEIVVVDEE---YGIRITEIVS 240 >gi|330828807|ref|YP_004391759.1| flagellar motor switch phosphatase FliY [Aeromonas veronii B565] gi|328803943|gb|AEB49142.1| Flagellar motor switch phosphatase FliY [Aeromonas veronii B565] Length = 130 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE + Sbjct: 39 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 91 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 92 DVLVNGTLIAHGEVVVV---NDKFGIRLTDVIS 121 >gi|311992319|gb|ADQ26733.1| flagellar motor switch protein [Aeromonas hydrophila] Length = 129 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE + Sbjct: 38 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 90 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 91 DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|317151985|ref|YP_004120033.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis Aspo-2] gi|316942236|gb|ADU61287.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis Aspo-2] Length = 174 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I++IP+++ LG + I+ L+ L +G V+ L+K GE ++I +N + +A+GE Sbjct: 91 DLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAV 150 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FG+R+ +I++ Sbjct: 151 VINE---KFGIRLTDIIS 165 >gi|117618193|ref|YP_855912.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559600|gb|ABK36548.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 130 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE + Sbjct: 39 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 91 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 92 DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121 >gi|242281270|ref|YP_002993399.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM 2638] gi|242124164|gb|ACS81860.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM 2638] Length = 229 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + D I++IP+ + LG M I+ L+ L G V+ L K GE ++I +N + +A+G Sbjct: 143 SRRDLDFILDIPLDVSAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARG 202 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E ++ E FG+R+ +I++ Sbjct: 203 EAVVINE---KFGIRLTDIIS 220 >gi|39995530|ref|NP_951481.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA] gi|39982293|gb|AAR33754.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA] gi|298504530|gb|ADI83253.1| flagellar motor switch protein FliN [Geobacter sulfurreducens KN400] Length = 101 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N + I++IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+GE Sbjct: 18 NLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAV 77 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+++I++ Sbjct: 78 VVNE---KFGVRLVDIVS 92 >gi|308048760|ref|YP_003912326.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] gi|307630950|gb|ADN75252.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] Length = 129 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 57/100 (57%), Gaps = 8/100 (8%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +++ P+ DS + D I++IPV + + +G + I NL+ L++G V+ LD Sbjct: 29 ELEQFDAPMGGDS-----EQQRKLDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELD 83 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + GE +D+ +N +A GE+ ++ + FG+R+ ++++ Sbjct: 84 RVAGEPLDVMVNGTLVAHGEVVVVND---KFGIRLTDVIS 120 >gi|74055042|gb|AAZ95847.1| FliN [Aeromonas hydrophila] Length = 130 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE + Sbjct: 39 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 91 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 92 DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121 >gi|219681459|ref|YP_002467844.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682015|ref|YP_002468399.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471134|ref|ZP_05635133.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621748|gb|ACL29904.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624302|gb|ACL30457.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085823|gb|ADP65905.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086396|gb|ADP66477.1| flagellar motor switch protein FliN [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086975|gb|ADP67055.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087552|gb|ADP67631.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 133 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%) Query: 46 DVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 DVD P + N+ L+ + D D I+N+PV + + LG+ ++I + + SKG ++ Sbjct: 25 DVDKNLLPQENSKNSTLDNTIDVVDSKKTILNVPVNITVELGTSRIKIKDFLKFSKGSML 84 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++ + E ++I +N IA GEI ++EE +G+R+ I N+ Sbjct: 85 ILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125 >gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp. avenae ATCC 19860] Length = 148 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E ++ +++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA Sbjct: 58 EAPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 117 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 +GE+ ++ + FG+R+ +++ Sbjct: 118 QGEVVVVND---KFGIRLTDVV 136 >gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI] Length = 422 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 DLI++IP+K+ +ILG I +++ L+ G V+ L V E V++ +N +A GE+ Sbjct: 338 RLDLILDIPLKVTVILGRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVV 397 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++ E+ FGVR+ I+ + Sbjct: 398 VVNEN---FGVRITSIIGPE 414 >gi|163744332|ref|ZP_02151692.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] gi|161381150|gb|EDQ05559.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] Length = 154 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 57/94 (60%), Gaps = 6/94 (6%) Query: 55 SSDSNNIL----EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + DS N L E + ++N+ + +QI+LG M IS L+ L++G ++ L++++G Sbjct: 57 TEDSRNALAPRPEAGGAGINAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGA 116 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 VD+ ++++ +A+G++ + ED GV + +I+ Sbjct: 117 PVDLMVSDRLVARGDLVKVGED--RLGVSLTQIV 148 >gi|145298354|ref|YP_001141195.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp. salmonicida A449] gi|142851126|gb|ABO89447.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp. salmonicida A449] Length = 121 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 10/93 (10%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 PIS++ D I++IPV + + +G + I NL+ L++G V+ LD+ GE + Sbjct: 30 PISAEERR-------KLDTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVELDRVAGEPL 82 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 83 DVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 112 >gi|90406811|ref|ZP_01215003.1| flagellar motor switch protein [Psychromonas sp. CNPT3] gi|90312048|gb|EAS40141.1| flagellar motor switch protein [Psychromonas sp. CNPT3] Length = 129 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 53/82 (64%), Gaps = 3/82 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +ST + D IM+IPV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA Sbjct: 42 ESTVSIDSIMDIPVTISMEVGRSRINIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAH 101 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ ++ + FG+R+ ++++ Sbjct: 102 GEVVVVND---KFGIRLTDVIS 120 >gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter carbinolicus DSM 2380] gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter carbinolicus DSM 2380] Length = 103 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +++IP+++ + +GS M I +L+ L +G +I LDK GE +D+ +N++ IA+GE + Sbjct: 21 LGFLLDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGEPLDLYVNSRLIARGEAVM 80 Query: 129 MEEDDTHFGVRVIEILNA 146 +++ +G+R+ ++++ Sbjct: 81 VKD---RYGLRLTDVVSP 95 >gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1] gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2] gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44] gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1] gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2] gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44] Length = 144 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 62/104 (59%), Gaps = 4/104 (3%) Query: 42 IQKNDVDNISEPISSDS-NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 ++ D+ + P++ D+ + + + +++++IPV++ + LG + I ++ L++G Sbjct: 32 VEGPDLSDQGGPLAGDAARSYGDVPVHDINMVLDIPVQLSVELGRTKVPIKYILQLAQGS 91 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++ Sbjct: 92 VVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVV 132 >gi|94987083|ref|YP_595016.1| flagellar motor switch/type III secretory pathway protein [Lawsonia intracellularis PHE/MN1-00] gi|94731332|emb|CAJ54695.1| Flagellar motor switch/type III secretory pathway protein [Lawsonia intracellularis PHE/MN1-00] Length = 164 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A Sbjct: 76 EGSRRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVA 135 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE ++ E FGVR+ +I++ Sbjct: 136 RGEAVVINE---KFGVRLTDIIS 155 >gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] Length = 126 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 3/79 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 L+ ++ +++ + LG + ++ + G V+ LDK GE+VD+ +N Q +A+GE+ + Sbjct: 46 LGLLADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVV 105 Query: 129 MEEDDTHFGVRVIEILNAQ 147 + E+ +G+R+ E++N + Sbjct: 106 IGEN---YGIRITELINPE 121 >gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1] gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1] Length = 148 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E ++ +++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA Sbjct: 58 EAPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 117 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 +GE+ ++ + FG+R+ +++ Sbjct: 118 QGEVVVVND---KFGIRLTDVV 136 >gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] Length = 124 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + N + +PV++ + L S M + L + +GDVI LD+ VGE +DI +N + + Sbjct: 37 RKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGR 96 Query: 124 GEITIMEEDDTHFGVRVIEI 143 GE+ E +GVR++EI Sbjct: 97 GEVV---EVAGRYGVRLLEI 113 >gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] Length = 142 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++ ++I++IPV++ + LG + I +++ L++G V+ LD GE +D+ +N IA+G Sbjct: 53 AGNDINMILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQG 112 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++ + FG+R+ +I+ Sbjct: 113 EVVVVND---KFGIRLTDIVT 130 >gi|15616703|ref|NP_239915.1| flagellar motor switch protein FliN [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386788|sp|P57183|FLIN_BUCAI RecName: Full=Flagellar motor switch protein FliN gi|25403545|pir||A84939 flagellar motor switch protein fliN [imported] - Buchnera sp. (strain APS) gi|10038766|dbj|BAB12801.1| flagellar motor switch protein fliN [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 133 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%) Query: 46 DVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 DVD P + N+ L+ + D D I+N+PV + + LG+ ++I + + SKG ++ Sbjct: 25 DVDKNLLPQENSKNSTLDNTIDIVDSKKTILNVPVNITVELGTSRIKIKDFLKFSKGSML 84 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++ + E ++I +N IA GEI ++EE +G+R+ I N+ Sbjct: 85 ILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125 >gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] Length = 128 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + N + +PV++ + L S M + L + +GDVI LD+ VGE +DI +N + + Sbjct: 41 RKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGR 100 Query: 124 GEITIMEEDDTHFGVRVIEI 143 GE+ E +GVR++EI Sbjct: 101 GEVV---EVAGRYGVRLLEI 117 >gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684] gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684] Length = 130 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++PV++ + +G M + + L G ++ L++ GE VD+ +N IA GE+ +++E Sbjct: 29 LSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVIDE 88 Query: 132 DDTHFGVRVIEILNA 146 + FG+R+ ++L A Sbjct: 89 E---FGLRITDVLGA 100 >gi|56460300|ref|YP_155581.1| flagellar motor switch protein [Idiomarina loihiensis L2TR] gi|56179310|gb|AAV82032.1| Flagellar motor switch [Idiomarina loihiensis L2TR] Length = 151 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+ + E+ D I++IPV + + +G + I NL+ L++G V+ L++ GE +D+ Sbjct: 56 SEDKPVTEEEKRKLDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERVAGEPLDVL 115 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N IA GE+ ++ + FG+R+ ++++ Sbjct: 116 VNGTLIAHGEVVVVND---KFGIRLTDVIS 142 >gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans BC] gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans BC] Length = 151 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 7/97 (7%) Query: 53 PISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 P+S + D + +++++IPV++ + LG + I ++ L++G V+ LD Sbjct: 47 PLSGEPARAFAGGGDAPAQDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALA 106 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N IA+GE+ ++ + FG+R+ +++ Sbjct: 107 GEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 140 >gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3] gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3] Length = 116 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DL+M++ V + + +G + I +L+ L++G +++LD+ V E +D+ +N IA+GE+ Sbjct: 33 DLDLLMDVQVTLSVEIGRTRLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 92 Query: 128 IMEEDDTHFGVRVIEILN 145 E FG+R+I++++ Sbjct: 93 ---ESAGQFGLRLIDVVS 107 >gi|330826723|ref|YP_004390026.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans K601] gi|329312095|gb|AEB86510.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans K601] Length = 151 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 7/97 (7%) Query: 53 PISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 P+S + D + +++++IPV++ + LG + I ++ L++G V+ LD Sbjct: 47 PLSGEPARAFAGGGDAPVQDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALA 106 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N IA+GE+ ++ + FG+R+ +++ Sbjct: 107 GEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 140 >gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC3088] gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC3088] Length = 102 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 55/84 (65%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +S+ N +++ NIPV + + +G ++I +L+ L +G V+ L++ GE +D+ +NN +A+ Sbjct: 16 ESSFNTEVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNNTVVAQ 75 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ ++ E +GVR+ ++ ++ Sbjct: 76 GEVVLVNE---RYGVRLTNVIPSE 96 >gi|312884903|ref|ZP_07744593.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367380|gb|EFP94942.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 138 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 57/91 (62%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 +S+ +++ + D I++IPV + + +G + I NL+ L++G V+ L++ GES+D+ Sbjct: 42 TSEQSSLSDDERRKIDSILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERLAGESLDV 101 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N IA GE+ ++ + FG+R+ ++++ Sbjct: 102 LVNGTLIAHGEVVVVND---KFGIRLTDVIS 129 >gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum ferrodiazotrophum] Length = 125 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D ++++P+ + + +G M I +L+ L +G V+ LDK GE +++ IN+Q +A+G++ Sbjct: 43 SLDYLLDVPLTISVRVGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVV 102 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ + +G+R+ +I++ Sbjct: 103 LV---NDKYGIRLTDIVS 117 >gi|119469994|ref|ZP_01612799.1| flagellar motor switch protein [Alteromonadales bacterium TW-7] gi|119446704|gb|EAW27977.1| flagellar motor switch protein [Alteromonadales bacterium TW-7] Length = 132 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +S + + I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D Sbjct: 35 LSDEKSEITGEEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLD 94 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +N IA GE+ ++ + FG+R+ ++++ Sbjct: 95 VLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123 >gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC BAA-430] gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC BAA-430] Length = 119 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 I P D LE +N+ ++++ V + LGS + +S ++ KG +I L K G Sbjct: 11 IQAPKQEDLARYLEGIINNYGGLLDMEVVFRSELGSTKIPLSEILQFEKGSIIDLQKPAG 70 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ESV+I IN + I KGE+ + E++ +RV EIL++ Sbjct: 71 ESVEIFINGRIIGKGEVMVYEKN---LAIRVNEILDS 104 >gi|109899344|ref|YP_662599.1| flagellar motor switch protein [Pseudoalteromonas atlantica T6c] gi|109701625|gb|ABG41545.1| flagellar motor switch protein FliN [Pseudoalteromonas atlantica T6c] Length = 131 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ + Sbjct: 49 LDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 108 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 109 V---NDKFGIRLTDVIS 122 >gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium SS3/4] Length = 445 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 57/91 (62%), Gaps = 5/91 (5%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 SS S N E + N +++M +P+++ + +G + +++ ++G ++ LDK GE D+ Sbjct: 352 SSGSENGEESA--NQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLVVLDKMAGEQADL 409 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N Q +A+G+I ++E+ +FG+R+ +I+ Sbjct: 410 YVNGQCVARGDIVVVED---NFGIRITDIVT 437 >gi|332305667|ref|YP_004433518.1| flagellar motor switch protein FliN [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172996|gb|AEE22250.1| flagellar motor switch protein FliN [Glaciecola agarilytica 4H-3-7+YE-5] Length = 131 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ + Sbjct: 49 LDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 108 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 109 VND---KFGIRLTDVIS 122 >gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 111 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 DL+ ++ V + + LGS + + L+ L G ++TLD+++ + VD+ +N + +A+ EI Sbjct: 35 RLDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIV 94 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + D FG+R++EI+ + Sbjct: 95 AV---DDRFGIRIVEIVEER 111 >gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT 98-5491] gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT 98-5491] Length = 119 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 I P D LE +N+ ++++ V LGS + + ++ KG +I L K G Sbjct: 11 IQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKGSIIDLQKPAG 70 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ESV+I IN + + KGE+ + E++ +RV EIL++ Sbjct: 71 ESVEIYINGRIVGKGEVMVYEKN---LAIRVNEILDS 104 >gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71] gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71] Length = 117 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DL+M++ V + + +G + I +L+ L++G +++LD+ V E +D+ +N IA+GE+ Sbjct: 34 DLDLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 93 Query: 128 IMEEDDTHFGVRVIEILN 145 E FG+R+I++++ Sbjct: 94 ---ESAGQFGLRLIDVVS 108 >gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM 43160] gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM 43160] Length = 249 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DL+ ++ +++ + +G M + L++L G+V+ LD+ D+ +N IA+GE+ Sbjct: 163 SLDLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVV 222 Query: 128 IMEEDDTHFGVRVIEILN 145 +++ED FG+R+ EI+ Sbjct: 223 VVDED---FGLRISEIVT 237 >gi|241763647|ref|ZP_04761697.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN] gi|241367122|gb|EER61488.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN] Length = 145 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 58/94 (61%), Gaps = 5/94 (5%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 EP+ S+ ++ ++ +++++IPV++ + LG + I ++ L++G V+ LD GE Sbjct: 45 GEPVRPFSSG--GETVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGE 102 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 +D+ +N IA+GE+ ++ + FG+R+ +++ Sbjct: 103 PMDVLVNGYLIAQGEVVVVND---KFGIRLTDVV 133 >gi|332531131|ref|ZP_08407045.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624] gi|332039416|gb|EGI75828.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624] Length = 122 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 64/113 (56%), Gaps = 6/113 (5%) Query: 35 TNNSEMLIQKNDVDNISEP--ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 + +E L ++ D EP + S+S + D +++++IPV++ + LG + I + Sbjct: 2 ADWAEALQEQKPDDGAVEPGGVLSESARGDAPAAD-INMVLDIPVQLSVELGRTKVPIKH 60 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 ++ L +G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++ Sbjct: 61 ILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 110 >gi|91200231|emb|CAJ73275.1| strong similar to flagellar motor switch protein FliN [Candidatus Kuenenia stuttgartiensis] Length = 120 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DLI+++ V + + LG M I +++ LS+G ++ L+K G V++ + + +A+GE+ Sbjct: 37 NLDLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPVELLVRGKLLARGEVV 96 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++EE FG+++ I Q Sbjct: 97 VVEE---RFGLKITAICGPQ 113 >gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] Length = 118 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++PV++ + L S + + L+ L +GD++ LD+ VGE +D+ +N + +GE+ E + Sbjct: 42 HLPVQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVV---EVN 98 Query: 134 THFGVRVIEI 143 +GVR++E+ Sbjct: 99 GRYGVRLLEV 108 >gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] Length = 212 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 51/75 (68%), Gaps = 3/75 (4%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 DL+ ++ + ++I LG M + +++ ++KG V++LDK G+ VDI +N + IA+GE+ ++ Sbjct: 135 DLVRDVELDVKIELGRTNMYLEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVL 194 Query: 130 EEDDTHFGVRVIEIL 144 + +F VR+ E++ Sbjct: 195 ND---NFCVRIAELI 206 >gi|78358624|ref|YP_390073.1| surface presentation of antigens (SPOA) protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221029|gb|ABB40378.1| Surface presentation of antigens (SPOA) protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 175 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 D I++IP+ + LG + I+ L+ L +G V+ L+K GE ++I +N + +A+GE Sbjct: 92 ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAV 151 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+ +I++ Sbjct: 152 VINE---KFGVRLTDIIS 166 >gi|315127311|ref|YP_004069314.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913] gi|315015825|gb|ADT69163.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913] Length = 132 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ + Sbjct: 50 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 109 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 110 VND---KFGIRLTDVIS 123 >gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium DG1235] gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium DG1235] Length = 82 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 52/83 (62%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + T + L+M++ VK+ + LGSC M + ++ L G VI L++ + V + IN++ IA Sbjct: 3 EETKDLGLLMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAY 62 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ ++E+ +FG+++ E+ N Sbjct: 63 GEVVVVED---NFGIKITEMANG 82 >gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42] gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY] gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42] gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY] Length = 149 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + +++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA Sbjct: 59 EPQVHDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 118 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 +GE+ ++ + FG+R+ +++ Sbjct: 119 QGEVVVVND---KFGIRLTDVV 137 >gi|332533118|ref|ZP_08408987.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis ANT/505] gi|332037400|gb|EGI73854.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis ANT/505] Length = 132 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ + Sbjct: 50 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 109 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 110 VND---KFGIRLTDVIS 123 >gi|303326579|ref|ZP_07357022.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3] gi|302864495|gb|EFL87426.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3] Length = 194 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+GE Sbjct: 111 ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAV 170 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+ +I++ Sbjct: 171 VINE---KFGVRLTDIIS 185 >gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus saanensis SP1PR4] gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus saanensis SP1PR4] Length = 100 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T DL+M+I + + G+ MQ+ ++ LS GDVI LD+ V + VD+ I ++ +A+GE Sbjct: 12 TPALDLLMDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVDLVIGDRIVARGE 71 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + ++ + +F + V E+ Q Sbjct: 72 VVVL---NGYFALNVTEVAAPQ 90 >gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT 98-5489] gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT 98-5489] Length = 119 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 I P D LE +N+ ++++ V LGS + + ++ KG +I L K G Sbjct: 11 IQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKGSIIDLQKPAG 70 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ESV+I IN + + KGE+ + E++ +RV E+L++ Sbjct: 71 ESVEIYINGRIVGKGEVMVYEKN---LAIRVNEVLDS 104 >gi|218887303|ref|YP_002436624.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758257|gb|ACL09156.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 180 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+GE Sbjct: 97 ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAV 156 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+ +I++ Sbjct: 157 VINE---KFGVRLTDIIS 171 >gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 FDLIM++ V++ + LG M++ +++ L++ V+ LD+ E +D+ +N + IA+GE+ Sbjct: 7 GFDLIMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGEVV 66 Query: 128 IMEEDDTHFGVRVIEILN 145 + FG+R++E++ Sbjct: 67 AQGD---RFGLRIVELVG 81 >gi|114797692|ref|YP_760111.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] gi|114737866|gb|ABI75991.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] Length = 89 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 57/94 (60%), Gaps = 9/94 (9%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 ++ N LEK ++M++PV++ ++LG + + L+ LS G+++ L+++ E VD Sbjct: 1 MTEPKNPALEK------MLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVD 54 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I ++ + +A+G++ + D GV + EI++++ Sbjct: 55 IYVSGRLVARGKLVV---TDGQLGVTLSEIIDSR 85 >gi|77359749|ref|YP_339324.1| flagellar motor switch protein [Pseudoalteromonas haloplanktis TAC125] gi|76874660|emb|CAI85881.1| flagellar biosynthesis; component of motor switch and energizing [Pseudoalteromonas haloplanktis TAC125] Length = 132 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ + Sbjct: 50 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVV 109 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 110 VND---KFGIRLTDVIS 123 >gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110] gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110] Length = 155 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 3/74 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I+++PV++ LG + I +L+ LS+G V+ LD G+ +D+ IN IA+GE+ ++ E Sbjct: 74 ILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAGQPLDVLINGYLIAQGEVVVVNE 133 Query: 132 DDTHFGVRVIEILN 145 +G+R+ +I+ Sbjct: 134 ---KYGIRLTDIVT 144 >gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] Length = 119 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 + IPV + + +GS + +++LVN+ +G V+ LDK GE +DI +N I + E+ + Sbjct: 40 FLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAG 99 Query: 131 EDDTHFGVRVIEI 143 + ++G+RV+E+ Sbjct: 100 D---NYGLRVVEL 109 >gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM 5305] gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM 5305] Length = 227 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 N++ + +++ ++ + ++I LG + I +V+L G V+ LDK G+ VDI +N Sbjct: 141 NSLGAQERAELEMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNG 200 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + IA+GE+ ++ ++ F VRV EIL + Sbjct: 201 RLIARGEVLVLNDN---FCVRVAEILTPK 226 >gi|220903654|ref|YP_002478966.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867953|gb|ACL48288.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 190 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+GE + Sbjct: 108 LDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVV 167 Query: 129 MEEDDTHFGVRVIEILN 145 + E FGVR+ +I++ Sbjct: 168 INE---KFGVRLTDIIS 181 >gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM 771] gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum acetoxidans DSM 771] Length = 572 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D +LI+++P+ + ++LG I +++ L+ G V+ L V E V++ +N +A+GE+ Sbjct: 486 DKINLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVNGTLVARGEV 545 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 ++ E+ FGVR+ ++ Q Sbjct: 546 VVVNEN---FGVRITNVITPQ 563 >gi|160896095|ref|YP_001561677.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1] gi|160361679|gb|ABX33292.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1] Length = 143 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 56/95 (58%), Gaps = 4/95 (4%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 EP+ + + ++ +++++IPV++ + LG + I ++ L++G V+ LD GE Sbjct: 42 GEPVRPYAGGA-DVPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGE 100 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA+GE+ ++ + FG+R+ +++ Sbjct: 101 PMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 132 >gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida subsp. salmonicida A449] gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida subsp. salmonicida A449] Length = 125 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 58/99 (58%), Gaps = 4/99 (4%) Query: 48 DNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D+IS P ++D S + IPVK+ + + S + + L+ + +G VI LDK Sbjct: 21 DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE++D+ +N + +AKGE+ ++ + +G+R++++++ Sbjct: 81 LAGETLDVRVNGRLLAKGEVVVV---NGKYGLRLVDVID 116 >gi|46578463|ref|YP_009271.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. Hildenborough] gi|120603953|ref|YP_968353.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4] gi|46447874|gb|AAS94530.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. Hildenborough] gi|120564182|gb|ABM29926.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4] gi|311232391|gb|ADP85245.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris RCH1] Length = 170 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+GE Sbjct: 87 ELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVARGEAV 146 Query: 128 IMEEDDTHFGVRVIEILN 145 ++ E FGVR+ +I++ Sbjct: 147 VINE---KFGVRLTDIIS 161 >gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM 20603] gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM 20603] Length = 259 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 62/116 (53%), Gaps = 6/116 (5%) Query: 33 SPTNNSEMLIQKNDVDNISEP-ISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQ 89 SP ++ + + +EP I + ++ T D L+ ++ + + + +G + Sbjct: 141 SPAASARTAQAEPSAPSPTEPEIRPFTPPMMGSGTGDDKLRLLYDVEMTLTVEIGRAKLP 200 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +++L+ G ++ LD+ G D+ +N +A+GE+ +++ED +G+RV EI++ Sbjct: 201 VRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDED---YGLRVTEIID 253 >gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp. YO3AOP1] gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp. YO3AOP1] Length = 194 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 3/79 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D++++IP+ + + +GS M I ++ L+ VI LDK + E +D+ +N +AKGE+ Sbjct: 107 LDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVLVAKGELYQ 166 Query: 129 MEEDDTHFGVRVIEILNAQ 147 + D +F +++ EIL + Sbjct: 167 V---DDNFAIKITEILTKE 182 >gi|85711034|ref|ZP_01042094.1| flagellar motor switch protein [Idiomarina baltica OS145] gi|85694947|gb|EAQ32885.1| flagellar motor switch protein [Idiomarina baltica OS145] Length = 140 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IPV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ + Sbjct: 58 LDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVV 117 Query: 129 MEEDDTHFGVRVIEILN 145 + + FG+R+ ++++ Sbjct: 118 V---NDKFGIRLTDVIS 131 >gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila] Length = 125 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 4/99 (4%) Query: 48 DNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D+IS P ++D S + IPVK+ + + S + + L+ + +G VI LDK Sbjct: 21 DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N + +AKGE+ ++ + +G+R++++++ Sbjct: 81 LAGEPLDVRVNGRLLAKGEVVVV---NGKYGLRLVDVID 116 >gi|188494288|ref|ZP_03001558.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|188489487|gb|EDU64590.1| flagellar motor switch protein FliN [Escherichia coli 53638] Length = 127 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 7/93 (7%) Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+D+ ++ + D+F L+ IPV + + + S + +++L+N+ VI LDK GE Sbjct: 28 SADAETLVTRLEDHFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +NN + K E+ ++ E +G+RV+E Sbjct: 88 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117 >gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21] gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21] Length = 96 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 D F LI +I V++ + LG M++ +++ L + VI LD+ E +D+ +N + IA+GE Sbjct: 5 ADGFGLIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGE 64 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + F +RV+EI+ A Sbjct: 65 VI---AQGNRFAIRVLEIVGA 82 >gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC 51599] gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC 51599] Length = 135 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + I++IPV++ + +G I+N++ L+ G V+ LD + G +D+ IN IA+GE+ Sbjct: 50 DIERILDIPVQLSVEIGRTRTTINNVLQLAPGSVVELDAQAGAPMDVLINGYLIAQGEVV 109 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ + FG+R+ +I+ Sbjct: 110 VVND---RFGIRLTDIV 123 >gi|306813324|ref|ZP_07447517.1| putative lateral flagellar motor switching and energizing component [Escherichia coli NC101] gi|305854087|gb|EFM54526.1| putative lateral flagellar motor switching and energizing component [Escherichia coli NC101] Length = 123 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%) Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +NN + K E+ ++ E +G+RV+E Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113 >gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035] gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035] Length = 102 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + L+ N+ V M + +G+ + + +L+ L++G V+ LD+ G+ +DI +N IAKGE+ Sbjct: 20 DLGLLANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVV 79 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++ E FG+R +I++ + Sbjct: 80 VVGE---KFGIRFGDIVDPR 96 >gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827] gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827] Length = 250 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +L+ + +++ LG + + L++LS G VI LD+ G D+ +N + IA+GE+ Sbjct: 167 GLELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVV 226 Query: 128 IMEEDDTHFGVRVIEILN 145 +++E+ FG+RV EI+ Sbjct: 227 VIDEN---FGIRVTEIIK 241 >gi|331671783|ref|ZP_08372579.1| flagellar switch protein [Escherichia coli TA280] gi|331070772|gb|EGI42131.1| flagellar switch protein [Escherichia coli TA280] Length = 127 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%) Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE Sbjct: 28 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +NN + K E+ ++ E +G+RV+E Sbjct: 88 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117 >gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17] gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17] Length = 96 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 NF L+ ++ VK+ + +GS + + L+ LS+ VI LD++ E +D+ +N I +GE+ Sbjct: 17 NFRLLQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGTLIGRGEVV 76 Query: 128 IMEEDDTHFGVRVIEILN 145 + + FGVR+ E++N Sbjct: 77 TVGD---RFGVRMTELVN 91 >gi|293403338|ref|ZP_06647429.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412] gi|298378949|ref|ZP_06988830.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302] gi|331640695|ref|ZP_08341842.1| flagellar switch protein [Escherichia coli H736] gi|331645398|ref|ZP_08346502.1| flagellar switch protein [Escherichia coli M605] gi|331666528|ref|ZP_08367402.1| flagellar switch protein [Escherichia coli TA271] gi|332281372|ref|ZP_08393785.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|291429191|gb|EFF02211.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412] gi|298280062|gb|EFI21566.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302] gi|331040069|gb|EGI12277.1| flagellar switch protein [Escherichia coli H736] gi|331045560|gb|EGI17686.1| flagellar switch protein [Escherichia coli M605] gi|331065752|gb|EGI37636.1| flagellar switch protein [Escherichia coli TA271] gi|332103724|gb|EGJ07070.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 127 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%) Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE Sbjct: 28 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +NN + K E+ ++ E +G+RV+E Sbjct: 88 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117 >gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus 11B] gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus 11B] Length = 123 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 8/104 (7%) Query: 47 VDNISEPISSDS--NNILEKST---DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 V + SEP S S N+ T +L+ N+ + + LG M + L++L+ G V Sbjct: 15 VGDSSEPAESVSPVNSAASAQTVRASRLELLQNVEMGVTAELGRTRMTVRELLSLAPGMV 74 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + L++ G +D+ +N IA+GE+ +++E+ FGVR+ EI+ Sbjct: 75 VELNRAAGSPIDLYVNGTLIARGEVVVIDEE---FGVRISEIVG 115 >gi|323975948|gb|EGB71042.1| flagellar motor switch protein FliN [Escherichia coli TW10509] Length = 123 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%) Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +NN + K E+ ++ E +G+RV+E Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113 >gi|293408349|ref|ZP_06652188.1| conserved hypothetical protein [Escherichia coli B354] gi|291471527|gb|EFF14010.1| conserved hypothetical protein [Escherichia coli B354] Length = 127 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%) Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE Sbjct: 28 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 87 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +NN + K E+ ++ E +G+RV+E Sbjct: 88 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 117 >gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae EF01-2] gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae EF01-2] Length = 163 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E+ ++ + +++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA Sbjct: 73 EQVINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 132 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 +GE+ ++ + FG+R+ +++ Sbjct: 133 QGEVVVVND---KFGIRLTDVV 151 >gi|170679793|ref|YP_001742353.1| lateral flagellar export/assembly protein LfiN [Escherichia coli SMS-3-5] gi|300936106|ref|ZP_07151046.1| putative flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|170517511|gb|ACB15689.1| lateral flagellar export/assembly protein LfiN [Escherichia coli SMS-3-5] gi|300458726|gb|EFK22219.1| putative flagellar motor switch protein FliN [Escherichia coli MS 21-1] Length = 123 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%) Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +NN + K E+ ++ E +G+RV+E Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113 >gi|259418090|ref|ZP_05742009.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] gi|259346996|gb|EEW58810.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] Length = 98 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 KS D + +++PV++ + +G I +LVNL + ++TLDK+V + VD+ + ++ +A+ Sbjct: 10 KSADAGNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVAR 69 Query: 124 GEITIMEEDDT-HFGVRVIEILNAQ 147 G++ ME D VR+ EI + Q Sbjct: 70 GQLEEMEGDQAGQLAVRLTEIADLQ 94 >gi|170021378|ref|YP_001726332.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|218703507|ref|YP_002411026.1| lateral flagellar motor switch C ring FliN-like protein [Escherichia coli UMN026] gi|256020210|ref|ZP_05434075.1| Lateral flagellar export/assembly protein, Flagellar motor switch (C ring) (FliN-like) [Shigella sp. D9] gi|260853449|ref|YP_003227340.1| putative lateral flagellar motor switching and energizing component [Escherichia coli O26:H11 str. 11368] gi|260866395|ref|YP_003232797.1| putative lateral flagellar motor switching and energizing component [Escherichia coli O111:H- str. 11128] gi|300817290|ref|ZP_07097508.1| putative flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300898059|ref|ZP_07116428.1| putative flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|301646792|ref|ZP_07246646.1| putative flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|307136839|ref|ZP_07496195.1| putative lateral flagellar motor switching and energizing component [Escherichia coli H736] gi|307315215|ref|ZP_07594794.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|59889763|emb|CAH19118.1| Lateral flagellar export/assembly protein (FliN-like) [Escherichia coli] gi|169756306|gb|ACA79005.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|218430604|emb|CAR11470.1| Lateral flagellar export/assembly protein, Flagellar motor switch (C ring) (FliN-like) [Escherichia coli UMN026] gi|257752098|dbj|BAI23600.1| predicted lateral flagellar motor switching and energizing component [Escherichia coli O26:H11 str. 11368] gi|257762751|dbj|BAI34246.1| predicted lateral flagellar motor switching and energizing component [Escherichia coli O111:H- str. 11128] gi|284920027|emb|CBG33083.1| lateral flagellar export/assembly protein (FliN-like) [Escherichia coli 042] gi|300358237|gb|EFJ74107.1| putative flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|300530266|gb|EFK51328.1| putative flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|301075027|gb|EFK89833.1| putative flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|306905396|gb|EFN35933.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|315059470|gb|ADT73797.1| Lateral flagellar C-ring switch protein [Escherichia coli W] gi|315616846|gb|EFU97463.1| flagellar motor switch family protein [Escherichia coli 3431] gi|323158012|gb|EFZ44113.1| surface presentation of antigens family protein [Escherichia coli EPECa14] gi|323178513|gb|EFZ64091.1| surface presentation of antigens family protein [Escherichia coli 1180] gi|323181528|gb|EFZ66948.1| surface presentation of antigens family protein [Escherichia coli 1357] gi|323191517|gb|EFZ76778.1| surface presentation of antigens family protein [Escherichia coli RN587/1] gi|323379972|gb|ADX52240.1| surface presentation of antigens (SPOA) protein [Escherichia coli KO11] Length = 123 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%) Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +NN + K E+ ++ E +G+RV+E Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113 >gi|323171042|gb|EFZ56691.1| surface presentation of antigens family protein [Escherichia coli LT-68] Length = 123 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 7/93 (7%) Query: 55 SSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+D+ ++ + D F L+ IPV + + + S + +++L+N+ VI LDK GE Sbjct: 24 SADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGE 83 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +NN + K E+ ++ E +G+RV+E Sbjct: 84 PLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113 >gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] Length = 84 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 3/74 (4%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 M++ + + + LG + I ++ L +G +I L K GE VD+ +N + IAKGE+ +++E Sbjct: 1 MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE- 59 Query: 133 DTHFGVRVIEILNA 146 FGVRV +I+++ Sbjct: 60 --CFGVRVTDIVDS 71 >gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92] gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92] Length = 105 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 ++D +M+I V LG+ + I+ L+ G VI L+K GESV++ INN+ KGE+ Sbjct: 18 SYDELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVM 77 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + E+ + +R+ EIL+++ Sbjct: 78 VYEK---NLAIRINEILDSK 94 >gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium yellowstonense SS-5] gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium yellowstonense SS-5] Length = 173 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 3/79 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D++++IP+ + + +GS M I ++ L+ VI LD+ + E +D+ +N +AKGE+ Sbjct: 86 LDILLDIPITITVEIGSKSMPIEEILKLAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQ 145 Query: 129 MEEDDTHFGVRVIEILNAQ 147 + D +F +++ EIL + Sbjct: 146 V---DDNFAIKITEILTKE 161 >gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1] gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1] Length = 149 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 67/117 (57%), Gaps = 8/117 (6%) Query: 33 SPTNNSEML-IQKNDVDNISEPISSDSNNILEKSTDNF--DL--IMNIPVKMQIILGSCC 87 +P N+ +++ + + + ++ SS N + +T + DL I++IP+ + +++G+ Sbjct: 24 TPQNDEDLMKLWEEAIQAQAQTESSAENQQAQATTQDISKDLQRILDIPLSITVVIGTTV 83 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I L+NL G V+ LD+ + V + N + IAK E+ ++ E+ FG+R+ EI+ Sbjct: 84 ITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGEN---FGIRIAEII 137 >gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826] gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826] Length = 105 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 ++D +M+I V LG+ + I+ L+ G VI L+K GESV++ INN+ KGE+ Sbjct: 18 SYDELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVM 77 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + E+ + +R+ EIL+++ Sbjct: 78 VYEK---NLAIRINEILDSK 94 >gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] Length = 123 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 5/93 (5%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 +SEP++ + L + +F IPV + + + S + + L+++ G VI LDK G Sbjct: 25 VSEPVAEQAPASLPQQDLSF--FGKIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAG 82 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 E +D+ +N AK E+ +M + ++G+R++E Sbjct: 83 EPLDVKVNGALFAKAEVVVM---NGNYGLRIVE 112 >gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM 10542] gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM 10542] Length = 247 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 DN L+ ++ + + +G + + ++ L G VI LD+ G D+ +N + IA+GE+ Sbjct: 166 DNLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEV 225 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++ED +G+R+ EI++ Sbjct: 226 VVIDED---YGLRITEIVD 241 >gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense Az-Fu1] gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense Az-Fu1] Length = 192 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +L++++P+ + + +GS M I +V LS V+ LD+ + E +D+ +N +AKGE+ Sbjct: 103 KLNLLLDLPITITVEIGSKVMTIEEIVKLSPSSVVDLDRFITEPIDLKVNGVLVAKGELY 162 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 +E+ F +++ EIL + Sbjct: 163 QVED---QFAIKIKEILTKE 179 >gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 116 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 + IPVK+ + +GS + +++L +S G V+ LDK GE +DI +N I + E+ + Sbjct: 38 FLRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSG 97 Query: 131 EDDTHFGVRVIEI 143 + ++G+RV+E+ Sbjct: 98 D---NYGLRVVEL 107 >gi|283784011|ref|YP_003363876.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] gi|282947465|emb|CBG87012.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] Length = 123 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 7/97 (7%) Query: 51 SEPISSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + P +S + ++ + D F L+ IPV + + + S + +++L+N+ VI LDK Sbjct: 20 AAPANSATEALVTRLEDRFSESMSLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDK 79 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 80 LAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113 >gi|116328051|ref|YP_797771.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331496|ref|YP_801214.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120795|gb|ABJ78838.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125185|gb|ABJ76456.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 174 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 4/95 (4%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S P S+ + +ST N +L+M++ + + + LG M I ++ L++G V+ LDK VGE Sbjct: 79 SAPRSATRQSASTQST-NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDKNVGE 137 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +DI N + +G++ M D +G+++ EI++ Sbjct: 138 DLDILANGHLVGRGKLVAM---DDFYGIQITEIVD 169 >gi|163784306|ref|ZP_02179216.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880424|gb|EDP74018.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1] Length = 193 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + +L+M+IP+++ + +G + + +++ L+ V+ LDK + E VDI IN + +AKGE+ Sbjct: 105 EKLELLMDIPLEISVEVGGRDILLEDILKLNPNTVLELDKYINEPVDIKINGKLVAKGEL 164 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 E +FGV++ I+ Q Sbjct: 165 YTAE---NNFGVKITSIVTVQ 182 >gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium capsulatum ATCC 51196] gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium capsulatum ATCC 51196] Length = 248 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N DL+++I V + GS + I L+ GDV+ LD+ + + VD+ + ++ +A+GE+ Sbjct: 162 NVDLLLDIEVDASLRFGSRELAIRELLETGPGDVLELDRHITDPVDLVVGDKIVARGEVV 221 Query: 128 IMEEDDTHFGVRVIEI 143 ++ + +FG+RV E+ Sbjct: 222 LV---NGNFGLRVTEV 234 >gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740] gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes] Length = 117 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + N+ P + +N LE+ N+ ++++ V LG+ + ++ ++ KG +I L Sbjct: 8 ETPNLINPRQQELSNYLEEVIRNYSGLLDMEVIFTAELGATKITLAEILKFEKGSIIDLQ 67 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K GESV+ +N + I KGE+ + E++ +R+ EIL++ Sbjct: 68 KPAGESVETFVNGRIIGKGEVMVYEKN---LAIRINEILDS 105 >gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] Length = 113 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 5/92 (5%) Query: 54 ISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + D +I E ++ D ++ IPV++ + +G + +++L++ G + L++ GE Sbjct: 17 LGDDPKSITETASPRDPMRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEP 76 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + I +N + GE+ + E H+G+R+IE+ Sbjct: 77 LVIKVNGTPVGLGEVVVSGE---HYGLRIIEL 105 >gi|51246521|ref|YP_066405.1| flagellar motor switch protein (FliN) [Desulfotalea psychrophila LSv54] gi|50877558|emb|CAG37398.1| probable flagellar motor switch protein (FliN) [Desulfotalea psychrophila LSv54] Length = 123 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 53/79 (67%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D + ++P+++ + +G + I +L+N+ +G VI L+K G+ +D+ +N++ IA+GE Sbjct: 39 SLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDLYVNSRLIARGEAV 98 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + FG+R+ ++++A Sbjct: 99 MIGD---KFGIRLTDVVSA 114 >gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 101 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +D +++I V+ LG+ + + L+ L G VI L+K GESV++ INN+ KGE+ Sbjct: 14 GYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVV 73 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + E++ +R+ EIL+++ Sbjct: 74 VYEKN---LAIRINEILDSK 90 >gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] Length = 95 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 3/72 (4%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +DL+++ + + ++LGS + I + ++L +GD+++LDK G DI +N++ I G+I + Sbjct: 8 YDLLVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRIIGTGDIIV 67 Query: 129 MEEDDTHFGVRV 140 ++E VRV Sbjct: 68 IDE---KLAVRV 76 >gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp. SB155-2] gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp. SB155-2] Length = 83 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +F L+ +I +KM + LGS I +++L +GDVI L++ + +D+ +N +K+A GEI Sbjct: 10 DFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIV 69 Query: 128 IMEEDDTHFGVRVIEI 143 ++ + +GVR++++ Sbjct: 70 VI---NDKYGVRIVDL 82 >gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus 82-40] gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp. fetus 82-40] Length = 101 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +D +++I V+ LG+ + + L+ L G VI L+K GESV++ INN+ KGE+ Sbjct: 14 GYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVM 73 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + E++ +R+ EIL+++ Sbjct: 74 VYEKN---LAIRINEILDSK 90 >gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267] gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267] Length = 118 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 ++D +M+I V LG+ + + L+ L G VI L+K GESV++ INN+ KGE+ Sbjct: 31 SYDELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVM 90 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + E++ +R+ EIL+++ Sbjct: 91 VYEKN---LAIRINEILDSK 107 >gi|144901008|emb|CAM77872.1| Surface presentation of antigens (SPOA) protein [Magnetospirillum gryphiswaldense MSR-1] Length = 90 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 + + + V+ +LG+ + I+ L+ L +G V+ LD++V + VD+ +N + IA+ E+ ++ Sbjct: 14 EAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVVV 73 Query: 130 EEDDTHFGVRVIEIL 144 E+ H V V E+L Sbjct: 74 ED---HLAVTVTEVL 85 >gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima DSM 10411] gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima DSM 10411] Length = 95 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 EK F+ +IP+KM L + +++ +L+ +GD+I +K GE ++I I N+ + Sbjct: 6 EKIKKEFEKYFDIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIENKPLG 65 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 GE+ ++ D F +R+ I Sbjct: 66 MGEVIVL---DNKFAIRITNIF 84 >gi|283834475|ref|ZP_06354216.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] gi|291070022|gb|EFE08131.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] Length = 123 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 7/97 (7%) Query: 51 SEPISSDSNNILEKSTDNFD----LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + P S + ++ + D F L+ IPV + + + S + +++L+N+ VI +DK Sbjct: 20 TPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVEVMLADLLNIDDDTVIEMDK 79 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 80 LAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEF 113 >gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp. TM1040] gi|99039065|gb|ABF65677.1| Flagellar motor switch protein fliN [Ruegeria sp. TM1040] Length = 98 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ + + +++PV++ + +G I +LVNL + ++TLDK+V + VD+ + ++ +A+ Sbjct: 10 KAAEASNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVAR 69 Query: 124 GEITIMEEDDT-HFGVRVIEILNAQ 147 G++ ME D VR+ EI + Q Sbjct: 70 GQLEEMEGDQAGQLAVRLTEIADLQ 94 >gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252] gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252] Length = 293 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+ ++ +++ + LG + +++++ L+ G +I L+K VGE ++I N + IA+GE Sbjct: 209 NLELLADVELEIVVELGRRRLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGEAV 268 Query: 128 IMEEDDTHFGVRVIEILNA 146 +++E FGVR+ ++ Sbjct: 269 VIDE---QFGVRITSLVTG 284 >gi|323186822|gb|EFZ72142.1| flagellar motor switch protein fliN domain protein [Escherichia coli RN587/1] Length = 102 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 33/50 (66%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102 >gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae 12198] gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae 12198] Length = 112 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 LE +++ +++I LGS + I ++N +G VI L K GESVD+ IN + + Sbjct: 20 LEDMIQSYEGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVDVFINTRIV 79 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 +GE+ + E++ +R+ EIL++ Sbjct: 80 GRGEVMVYEKN---LAIRLNEILDS 101 >gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum acetoxidans DSM 771] gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum acetoxidans DSM 771] Length = 128 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I ++PV + LG + + ++NLS G +I LD GE V ++INNQK +GE+ ++ + Sbjct: 44 IEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVMVIND 103 Query: 132 DDTHFGVRVIEIL 144 + +G+R+ + Sbjct: 104 N---YGIRITSVF 113 >gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1] gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1] Length = 84 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D+++++ VK+ + LGS + + ++ LS G V+ L + + V + +N+Q +A GE+ + Sbjct: 6 LDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVV 65 Query: 129 MEEDDTHFGVRVIEILNAQ 147 +E++ FG+++ E++ ++ Sbjct: 66 VEDN---FGIKITELVGSE 81 >gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195] gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195] Length = 104 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +++ I++I V LG+ M +S L+ L G VI L+K GESV++ IN + KGE+ Sbjct: 18 SYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVM 77 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + E++ +R+ EIL+++ Sbjct: 78 VYEKN---LAIRINEILDSK 94 >gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277] gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277] Length = 118 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 ++D +M+I V LG+ + + L+ L G VI L+K GESV++ INN+ KGE+ Sbjct: 31 SYDELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVM 90 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + E++ +R+ EIL+++ Sbjct: 91 VYEKN---LAIRINEILDSK 107 >gi|27904580|ref|NP_777706.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395830|sp|Q89AZ3|FLIN_BUCBP RecName: Full=Flagellar motor switch protein FliN gi|27903977|gb|AAO26811.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 134 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 IM++PV + I +G+ + I +L+ L ++ LDK G+ ++I +N IA GE+ + E Sbjct: 56 FIMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTE 115 Query: 131 EDDTHFGVRVIEILN 145 +G+R+I I++ Sbjct: 116 ---NKYGIRIINIID 127 >gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21] gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21] Length = 104 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +++ I++I V LG+ M +S L+ L G VI L+K GESV++ IN + KGE+ Sbjct: 18 SYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVM 77 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + E++ +R+ EIL+++ Sbjct: 78 VYEKN---LAIRINEILDSK 94 >gi|83594500|ref|YP_428252.1| surface presentation of antigens (SPOA) protein [Rhodospirillum rubrum ATCC 11170] gi|83577414|gb|ABC23965.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum rubrum ATCC 11170] Length = 93 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 48/75 (64%), Gaps = 2/75 (2%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + +PV++ ++LG ++++ L+ L +G V+ L++++ E V+I N+ +A+GE+ I + Sbjct: 15 VYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITDG 74 Query: 132 DDTHFGVRVIEILNA 146 D GV + E++ + Sbjct: 75 D--KIGVTLTELVRS 87 >gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 172 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++ +++ I LG M I +++ LS+G V+ LDK +GE +DI N + + +G++ ++ D Sbjct: 93 DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVL---D 149 Query: 134 THFGVRVIEILN 145 ++GV++ +I++ Sbjct: 150 DYYGVQITQIVD 161 >gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 315 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P+ D I + D+ +++ V+ +GS + ++++ +G V+ LDK+ G Sbjct: 227 PLQYDREQIGDDKKKLLDITLDVSVR----IGSTVCSVKDVLSFKEGQVLVLDKQAGSPA 282 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 D+ N + I +G++ + + HFG R+IEI+ + Sbjct: 283 DVVANGELIGRGDVLVSGD---HFGARIIEIVGKR 314 >gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855] gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855] Length = 250 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 48/75 (64%), Gaps = 3/75 (4%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + F L+ ++ +++++ LG + +++++ L+ G V+ L+K VGE + + N + IA+GE Sbjct: 165 SGTFKLLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGE 224 Query: 126 ITIMEEDDTHFGVRV 140 +++E FGVR+ Sbjct: 225 AVVIDE---QFGVRI 236 >gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC BAA-613] gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC BAA-613] Length = 320 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 18/134 (13%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNIS-----------EPISSDSNNILEKSTDNFDL 71 D P Q+T +P + + + I+ PI I E+ D+ Sbjct: 191 DMPCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKKLLDI 250 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +++ V+ LGS + ++++L +G ++ LDK+ G D+ +N + I +G++ + + Sbjct: 251 TLDVSVR----LGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGD 306 Query: 132 DDTHFGVRVIEILN 145 FG R+IE++ Sbjct: 307 ---RFGARIIEVVG 317 >gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8] gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8] Length = 236 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 20/125 (16%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNIS-----------EPISSDSNNILEKSTDNFDLIMNI 75 Q + S P ++ D + E IS D + + F L+ ++ Sbjct: 107 QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGD------SGTFKLLADV 160 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 +++++ LG + +++++ L+ G V+ L+K VGE + + N + IA+GE +++E Sbjct: 161 DLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDE---Q 217 Query: 136 FGVRV 140 FGVR+ Sbjct: 218 FGVRI 222 >gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 178 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+M++ + + + LG M I ++ L++G V+ LDK VGE +DI N + + +G++ Sbjct: 99 NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLV 158 Query: 128 IMEEDDTHFGVRVIEILN 145 M D +G+++ EI++ Sbjct: 159 AM---DDFYGIQITEIVD 173 >gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] Length = 178 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+M++ + + + LG M I ++ L++G V+ LDK VGE +DI N + + +G++ Sbjct: 99 NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLV 158 Query: 128 IMEEDDTHFGVRVIEILN 145 M D +G+++ EI++ Sbjct: 159 AM---DDFYGIQITEIVD 173 >gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus A6] gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus A6] Length = 238 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 LI N+ + + + +G M + + + L G VI LD+ G D+ +N + IA GE+ Sbjct: 158 RLSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVV 217 Query: 128 IMEEDDTHFGVRVIEILN 145 ++++D + VR+ IL+ Sbjct: 218 VVDQD---YAVRITRILD 232 >gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 260.94] gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 260.94] gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 102 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + Sbjct: 8 NIYHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 KGE+ + E++ +R+ EIL+++ Sbjct: 68 IFGKGEVMVYEKN---LAIRINEILDSK 92 >gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus cytotoxicus NVH 391-98] Length = 119 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E++ + D + +I +++ + LG +Q+ ++ NL GDV+ ++K +G VD+ +++ K+ Sbjct: 22 EQAKAHIDTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEVEKNLGHKVDVYLSDIKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M D FG+ + EI Sbjct: 82 IGEAIVM---DEQFGIIISEI 99 >gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] Length = 269 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 59/95 (62%), Gaps = 3/95 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 +I + IS S+ + ++ D++M++ +++++ +G M + +++++ G ++ LD+ Sbjct: 165 DIKDKISESSHELNKEIPSQLDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQLA 224 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 E +DI I ++KI +GE+ I+ D +FG+++ I Sbjct: 225 NEPLDILIEDKKIGEGEVVIV---DGNFGIQITSI 256 >gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179] gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC 49179] Length = 139 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P + LE+ +++ ++++ V LGS + + ++ +G VI L K GESV Sbjct: 38 PREIELTTYLEELIEDYKGLLDMEVTFMAELGSTSIPLGEVLRFERGSVIDLQKPAGESV 97 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D +N + I KGE+ + E+ + +R+ E+L++ Sbjct: 98 DTFVNGRVIGKGEVMVYEK---NLAIRLNEVLDS 128 >gi|310816847|ref|YP_003964811.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare Y25] gi|308755582|gb|ADO43511.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare Y25] Length = 98 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 D+ +LE + + N+P+++ I +G + L+ L + V+ LD+R+ + V+I Sbjct: 6 PDAKPLLEGANPA---LWNVPIEVTIAVGRSRPSVRELLALEENAVLQLDRRIDDPVEIY 62 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEI 143 I ++ IA+GE+ E++ VR+ E+ Sbjct: 63 IGDRLIARGELQESEDEPGQLAVRLTEV 90 >gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228] gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20] gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228] gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20] Length = 102 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 D + +L+ D I++I V LG+ M ++ L+ L G VI L+K GESV++ Sbjct: 8 GDRHGLLQSYED----ILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELY 63 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 IN + KGE+ + E++ +R+ EIL+++ Sbjct: 64 INKRIFGKGEVMVYEKN---LAIRINEILDSK 92 >gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 414] gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 414] Length = 102 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + Sbjct: 8 NIHHGLLQSYEDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 KGE+ + E++ +R+ EIL+++ Sbjct: 68 IFGKGEVMVYEKN---LAIRINEILDSK 92 >gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM 3776] gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM 3776] Length = 189 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D + ++ + ++I LG + I ++ L +G V+ LDK G+ VDI +N + +A+GE+ + Sbjct: 113 LDALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLV 172 Query: 129 MEEDDTHFGVRVIEILN 145 + + +F VR+ EIL Sbjct: 173 L---NDNFCVRIAEILT 186 >gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9] gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9] Length = 261 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ST N +L++++ + + + G + + +++L+ G V+ LD++V E V++ ++ + +A+G Sbjct: 180 STSNLNLVLDVELNVTLRFGQRQLSLREVLDLTSGSVVELDRQVDEPVELVLDGKVVARG 239 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E I+ D ++G+R+ ++L Sbjct: 240 EAVII---DGNYGMRITQVLQ 257 >gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella aurantiaca DW4/3-1] gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella aurantiaca DW4/3-1] Length = 441 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%) Query: 19 SMHIDNP-LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 S+ I P Q SP + D + SE S D+ N E S DL+ +IP+ Sbjct: 321 SIVIGEPAFQRAVPPSPEGEEAFTQPETDGSSESEGQSLDTMNKSEGS----DLLADIPL 376 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 ++ + L + +V+L G V+ L + GE V++++N + +A+GE+ E + G Sbjct: 377 QIAVELARVPVTADEVVSLRVGHVLELHRSPGEPVELSVNGKVVARGELV---EVEGQLG 433 Query: 138 VRVIEI 143 VRV+ + Sbjct: 434 VRVLSL 439 >gi|291532052|emb|CBK97637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium siraeum 70/3] Length = 400 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 42/62 (67%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N L+M++P+++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++ Sbjct: 339 ENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDV 398 Query: 127 TI 128 + Sbjct: 399 LL 400 >gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter alkaliphilus AHT 1] gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter alkaliphilus AHT 1] Length = 150 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 + ++PV + + LG+ + + ++ L K +I LDK GE+ + +N + +A GE+ ++ Sbjct: 69 NFFESVPVTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVI 128 Query: 130 EEDDTHFGVRVIEI 143 + +FG RV E+ Sbjct: 129 ---NDNFGFRVAEV 139 >gi|320354330|ref|YP_004195669.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM 2032] gi|320122832|gb|ADW18378.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM 2032] Length = 126 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T + + ++P+++ + +G + + +L+ + +G V+ LDK GE +D+ +N + IA+GE Sbjct: 41 TRELEFLFDVPLQVSVEVGRARILLKDLLQMGEGYVVELDKLAGEPLDLYVNARLIARGE 100 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + + FG+++ E+++ Sbjct: 101 AVKVGD---KFGIKLTEVVS 117 >gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221] gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 84-25] gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei 269.97] gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni] gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221] gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 81-176] gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 84-25] gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei 269.97] gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni S3] gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni 305] gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 327] Length = 102 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + Sbjct: 8 NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 KGE+ + E++ +R+ EIL+++ Sbjct: 68 IFGKGEVMVYEKN---LAIRINEILDSK 92 >gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas ingrahamii 37] gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas ingrahamii 37] Length = 120 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 NDV++IS+ S S K + + +IPV + + +G+ + + L+ + V+ L Sbjct: 23 NDVNDISDAPPSSS----AKKAKSLSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLML 78 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 K G+++DI +N + A GE+ + + H+GV++ +I+N Sbjct: 79 TKENGKALDIKVNGKLFAYGEVVVA---NGHYGVKITDIVN 116 >gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio acetiphilus DSM 12809] gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio acetiphilus DSM 12809] Length = 95 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG +++ L+N KG ++ K GE VD +N + +A GEI ++ D F VR+ E Sbjct: 22 LGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVL---DERFAVRITE 78 Query: 143 ILNAQ 147 IL + Sbjct: 79 ILEKE 83 >gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni M1] Length = 105 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + Sbjct: 11 NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 70 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 KGE+ + E++ +R+ EIL+++ Sbjct: 71 IFGKGEVMVYEKN---LAIRINEILDSK 95 >gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01] gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01] Length = 123 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV + + + S + + L+++ G VI LDK GE +D+ +N AK E+ +M + Sbjct: 48 IPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVM---NG 104 Query: 135 HFGVRVIE 142 ++G+R++E Sbjct: 105 NYGLRIVE 112 >gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus hydrogenoformans Z-2901] gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus hydrogenoformans Z-2901] Length = 124 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 5/66 (7%) Query: 77 VKMQII--LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +KM+I+ +G+ + + L+ L +GDV+ LDK +G+ +D+ I+ ++ A GE+ ++ E Sbjct: 46 IKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINE--- 102 Query: 135 HFGVRV 140 +GVR+ Sbjct: 103 MYGVRI 108 >gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484] gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484] Length = 238 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 19/91 (20%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +++ + + + N ++ ++ + + +G + + +++L+ G V+ LD+ G D Sbjct: 141 VATPTTSQVPTPRANLRMLYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELDRTAGSPAD 200 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + +N + +A+GE+ +++E +G+RV EI+ Sbjct: 201 VLVNGRLVARGEVVVVDE---VYGIRVTEIV 228 >gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018] gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018] Length = 289 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ N +L+ N+ +K+ + LG+ + + +++ G++I L++ V E ++I IN KI +G Sbjct: 202 TSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEG 261 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E I+E FG+++ I+N Sbjct: 262 EAVIVE---GKFGLKIKRIIN 279 >gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630] gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile QCD-63q42] gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC 43255] gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile] Length = 124 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + +N I+++ +++ +++G M + +++NL KG +I LD + V+I I+N+ +A Sbjct: 36 EVNRNNIQRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLA 95 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 G++ ++ D +FGV++ I++ + Sbjct: 96 YGKVVVV---DLNFGVKITSIVSEE 117 >gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1] gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1] Length = 108 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V++Q++LG + + L+ + +G VI LD V E V I NN +A+GEI I Sbjct: 34 VEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVARGEIQI 85 >gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22] gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22] Length = 288 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ N +L+ N+ +K+ + LG+ + + +++ G++I L++ V E ++I IN KI +G Sbjct: 201 TSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEG 260 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E I+E FG+++ I+N Sbjct: 261 EAVIVE---GKFGLKIKRIIN 278 >gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio ammonificans HB-1] gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio ammonificans HB-1] Length = 83 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 43/64 (67%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T+ + +I +K+ +++G M S ++ L +GD+ITLDK++ + +++T+N+Q+ GE Sbjct: 8 TEKLERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLNDQEFGIGE 67 Query: 126 ITIM 129 + ++ Sbjct: 68 LIVI 71 >gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100] gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100] Length = 279 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++ + +++ +GS M + +++ + G VI LD+ + ++I I ++KIA GE+ Sbjct: 196 NIGLIMDVRLPIRVRIGSKKMLLKDVLTMDIGSVIELDQLANDPLEILIGDKKIAYGEVV 255 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FGV++ EI Sbjct: 256 IV---DGNFGVQITEI 268 >gi|146278776|ref|YP_001168935.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] gi|145557017|gb|ABP71630.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] Length = 88 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +P+++ I +G + L+ L + V+ LD+RV + VD+ + ++ I +GE+T +E D Sbjct: 11 QVPIEITISVGRARPPVRELLKLQRDAVLALDRRVDDPVDLYVGDRLIGRGELTELEGDQ 70 Query: 134 T-HFGVRVIEILN 145 VR+ E+ N Sbjct: 71 AGQLAVRLTEVAN 83 >gi|54307254|ref|YP_128274.1| putative flagellar motor switch protein [Photobacterium profundum SS9] gi|46911674|emb|CAG18472.1| putative flagellar motor switch protein [Photobacterium profundum SS9] Length = 117 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S+ + + I NIPV + + + S + + +L+N+ G VI LDK GE++D+ +N + Sbjct: 30 SSQDMNFIRNIPVNLTLEVASTELMVGDLMNIGLGTVIELDKISGEAMDVKVNGTLLGHA 89 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ I+ + +G+R++ +++ Sbjct: 90 EVVIV---NNKYGLRLVSVVD 107 >gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1] gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5] gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5] gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1] Length = 117 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P + LE+ +++ ++++ + LGS + + ++ +G VI L K GESV Sbjct: 16 PRELELTTYLEELINDYKGLLDMEITFMAELGSTFIPLREVLRFERGSVIDLQKPAGESV 75 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D +N + I KGE+ + E++ +R+ E+L++ Sbjct: 76 DTFVNGRVIGKGEVMVYEKN---LAIRLNEVLDS 106 >gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] Length = 116 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S+++ I NIPV + + + S +++ +L+N++ G VI LDK GE +D+ +N + Sbjct: 29 SSNDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVRVNGTLLGHA 88 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ + +G+R++ +++ + Sbjct: 89 EVVVV---NNKYGLRLVNVVDEK 108 >gi|294678996|ref|YP_003579611.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB 1003] gi|294477816|gb|ADE87204.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB 1003] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132 +P+++ I +G + +L+ + + ++ LD+RV + V++ + ++ IA+GE+T ME D Sbjct: 13 QVPIEITISVGKARPLVRDLLRMKRDSILPLDRRVEDPVELYVGDKLIARGELTEMEGDS 72 Query: 133 DTHFGVRVIEILNAQ 147 + VR+ E+++ Q Sbjct: 73 NGQLAVRLTEVVDLQ 87 >gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum kujiense DSM 16994] gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum kujiense DSM 16994] Length = 114 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S ++D ++++ V+ LG + + ++ L KG VI L K GESV+ +N + I Sbjct: 22 ELSWMDYDGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPAGESVESYVNRRIIG 81 Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146 KGE+ + E++ +R+ E+L++ Sbjct: 82 KGEVMVYEKN---LAIRINEVLDS 102 >gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] Length = 151 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +++ + I ++Q+ +G+ + + L+ + V+ LD+ + VD+TI + +A+G++ Sbjct: 69 DWNPLHQIKARLQVCVGAVSLSVGELLGAKEHQVLRLDREIDHPVDLTIEGKVVARGQLV 128 Query: 128 IMEEDDTHFGVRVIEI 143 + D HF VR+ E+ Sbjct: 129 AV---DGHFAVRITEL 141 >gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449] gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC 51449] Length = 117 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 LE N+ ++++ LGS + + ++ KG +I L K GESV+I IN + I Sbjct: 24 LEDMMKNYTGLLDMEALFNAELGSTKIPLGEILRFEKGSIIDLGKPAGESVEIFINGRVI 83 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 KGE+ + E + +R+ EIL++ Sbjct: 84 GKGEVMVYERN---LAIRINEILDS 105 >gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W] gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W] Length = 119 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L] gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus AH820] gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201] gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L] gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus AH820] gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201] gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 119 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDE---KFGIIISEI 99 >gi|260432139|ref|ZP_05786110.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis ITI-1157] gi|260415967|gb|EEX09226.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis ITI-1157] Length = 95 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133 IP+++ + +G I +L+N+ + V+TLDKRV + VD+ + +Q +A+G + ME E Sbjct: 18 IPIEVTVSVGRARPLIRDLLNMGENAVLTLDKRVEDPVDLYVGDQLVARGLLEEMEGEHA 77 Query: 134 THFGVRVIEI 143 VR+ EI Sbjct: 78 GQLAVRLTEI 87 >gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus Desulforudis audaxviator MP104C] gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus Desulforudis audaxviator MP104C] Length = 127 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 LG M + ++L +G VI LD+ GE++D+ +N K+A+GE+ ++ Sbjct: 58 LGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVI 104 >gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Bacillus anthracis str. A2012] gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0488] gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0442] gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0193] gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0389] gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0174] gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis Tsiankovskii-I] gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. CDC 684] gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0248] gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066] gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055] gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western North America USA6153] gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B] gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum] gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia 94] gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. Ames] gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. 'Ames Ancestor'] gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis str. Sterne] gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0488] gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0193] gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0442] gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0389] gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0174] gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis Tsiankovskii-I] gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. CDC 684] gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0248] Length = 119 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDE---KFGIIISEI 99 >gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0465] gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0465] Length = 119 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDE---KFGIIISEI 99 >gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e] gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e] Length = 111 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+ Sbjct: 30 DPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEV 89 Query: 127 TIMEEDDTHFGVRVIEILN 145 + E+ +G++VI++ N Sbjct: 90 VVSGEN---YGLKVIDLEN 105 >gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797] gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797] Length = 226 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + N+ + + I LG + I ++ + +G V+ LDK G+ VDI +N + IA+GE+ ++ Sbjct: 153 LQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVL-- 210 Query: 132 DDTHFGVRVIEILNAQ 147 + +F VRV EI++ + Sbjct: 211 -NDNFCVRVAEIISPE 225 >gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB108] gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB102] gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1] gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al Hakam] gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB108] gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB102] gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1] Length = 119 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDE---KFGIIISEI 99 >gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42] gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI] gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42] gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 119 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|308273527|emb|CBX30129.1| hypothetical protein N47_D29380 [uncultured Desulfobacterium sp.] Length = 71 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 3/63 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG M I++L+ L +G +I L+K++G+ +DI I ++ IAKGE+ ++ D FG+R+ Sbjct: 3 LGQTRMLINDLLQLGQGSIIELNKQIGDPIDIFICDKLIAKGEVVVV---DDKFGIRLTN 59 Query: 143 ILN 145 I++ Sbjct: 60 IIS 62 >gi|254511535|ref|ZP_05123602.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] gi|221535246|gb|EEE38234.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] Length = 95 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +P+++ + +G I +L+N+ + V+TLD+R+ + VD+ + +Q +A+G + ME D Sbjct: 18 VPIEVTVSVGRARPLIRDLLNMGENAVLTLDRRIEDPVDLYVGDQLVARGLLEEMEGDQA 77 Query: 135 -HFGVRVIEILNAQ 147 VR+ EI + Q Sbjct: 78 GQLAVRLTEISDLQ 91 >gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5] gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5] Length = 112 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV++++++G + L+ + G VI +D+ + VDI +N + IAKGE+ I+ D Sbjct: 41 DIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVII---D 97 Query: 134 THFGVRVIEILNAQ 147 GV++ E++ Q Sbjct: 98 GKIGVKIKEVVKEQ 111 >gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] Length = 318 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 7/95 (7%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P+ + ++I E+ D+ +++ V+ I G+ C + +++ L KG ++TLDK+ G Sbjct: 230 PLDNQVDHIGEERKKLRDITLDVSVR---IGGTVC-SVKDILALQKGQILTLDKQAGSPA 285 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 D+ +N + I K ++ + D F R+IEI+ + Sbjct: 286 DVVVNGKLIGKSDVLVT---DDKFAARIIEIIGKR 317 >gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis TXDOH] gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis Bt4] gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] Length = 115 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+ Sbjct: 34 DPRHLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEV 93 Query: 127 TIMEEDDTHFGVRVIEILN 145 + E+ +G+++I++ N Sbjct: 94 VVSGEN---YGLKIIDLEN 109 >gi|260574385|ref|ZP_05842389.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] gi|259023281|gb|EEW26573.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] Length = 89 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +P+++ I +G Q+ +L+ L + V+ LD+RV + V++ + ++ IA+GE+ ++ D Sbjct: 12 QVPIEITISVGKARPQVRDLLKLQRDAVLPLDRRVDDPVELYVGDRLIARGELQELDGDQ 71 Query: 134 T-HFGVRVIEILN 145 VR+ E+ N Sbjct: 72 AGQLAVRLTEVAN 84 >gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3] gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3] gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1] Length = 119 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDE---KFGIIISEI 99 >gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342] gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342] Length = 119 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus NVH0597-99] gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus H3081.97] gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187] gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1] gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26] gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293] gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus NVH0597-99] gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus H3081.97] gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus AH187] gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1] gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293] gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26] Length = 119 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29] gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29] Length = 119 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|288960009|ref|YP_003450349.1| flagellar motor switch protein [Azospirillum sp. B510] gi|288912317|dbj|BAI73805.1| flagellar motor switch protein [Azospirillum sp. B510] Length = 100 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 15/60 (25%), Positives = 41/60 (68%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I + PV++++++G+ +++ +L+ L +G V+ LD+ + + D+ + +A+GE+ I+++ Sbjct: 23 IGDAPVEIKVVIGTAMLRVRDLLKLGRGAVVELDRHLKDPTDVYVEGVLVARGEVAIIDD 82 >gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879] gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879] Length = 128 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 D + P + + LE N++ ++++ V LG+ + ++ ++ KG +I L Sbjct: 15 DKKQVHTPREIELASYLEDMMANYEGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQ 74 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K G SV+I +N++ + KGE+ + E + +R+ EIL++ Sbjct: 75 KPAGASVEIFVNDRVVGKGEVMVYERN---LAIRINEILDS 112 >gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus G9241] gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus G9241] Length = 119 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium thermolithotrophum DSM 11699] Length = 122 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 46/74 (62%), Gaps = 3/74 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IP+++ I +GS + + ++ L ++ LD+ + E VDI IN + +AKG++ + E+ Sbjct: 44 DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIREN- 102 Query: 134 THFGVRVIEILNAQ 147 +G+++ +I+ + Sbjct: 103 --YGIKITQIITPE 114 >gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100] gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100] Length = 98 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +++ I++I V LG+ M + L+ L G VI L+K GESV++ +N + KGE+ Sbjct: 11 SYEDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEVM 70 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + E++ +R+ EIL+++ Sbjct: 71 VYEKN---LAIRINEILDSK 87 >gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] Length = 293 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 4/96 (4%) Query: 51 SEPISSDSNNIL-EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 S P S+ +++L ++S+ N L+ +I +K+ + LG+ + +++ G++I L++ V Sbjct: 190 SLPTSNGIDSLLSDESSKNLKLLFDIKLKLSVRLGTKLFLLKDILKWDIGEIIELEQMVN 249 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 E +DI +N KI +GE I+E FG+++ I N Sbjct: 250 EPLDILVNGIKIGEGEAVIVE---GKFGLKIKNIGN 282 >gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia oklahomensis EO147] gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia oklahomensis C6786] Length = 115 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 5/93 (5%) Query: 53 PISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 P +SDS + I D L+ IPV++ + +GS + ++ L+ + +G V+ LD+ GE Sbjct: 18 PEASDSPADAIERPRRDPMQLLAKIPVQLTLEVGSATITLAELMAIEEGSVLELDRLAGE 77 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + I IN + E+ + ++G++++++ Sbjct: 78 PLLIKINGTPVGHAEVVV---SGDNYGLKLLDL 107 >gi|229058413|ref|ZP_04196797.1| Flagellar motor switch protein FliN [Bacillus cereus AH603] gi|228719922|gb|EEL71512.1| Flagellar motor switch protein FliN [Bacillus cereus AH603] Length = 119 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + D + +I +++ + LG +Q+ ++ L GDV+ ++K +G VD+ +++ K+ Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSIQLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH] gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH] Length = 270 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 58/94 (61%), Gaps = 4/94 (4%) Query: 51 SEPISSDSNNI-LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 SE S+ S + L+ N +++++I +++++ +GS M + +++ + G ++ L++ Sbjct: 168 SEGSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAK 227 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 E +DI I ++KI +GE+ I+ D +FG+++ I Sbjct: 228 EPLDILIEDKKIGEGEVVIV---DGNFGIQITSI 258 >gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1] gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1] Length = 127 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N L+ +IPV + + + + + L+NL G V+ L+K G+ VDI IN GEI Sbjct: 49 NVSLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIV 108 Query: 128 IMEEDDTHFGVRVIEIL 144 + +GVR++ I+ Sbjct: 109 ---SKNGQYGVRLLSII 122 >gi|209964576|ref|YP_002297491.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|15077432|gb|AAK83160.1|AF332661_1 lateral flagellum motor switch protein FliNL [Rhodospirillum centenum] gi|209958042|gb|ACI98678.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 103 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 42/60 (70%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I + V++ ++LG+ +++ +L+ L +G ++ LD+++ + DI ++ + + +GE+TI+E+ Sbjct: 30 IYDTEVEVSVVLGTSTIRVRDLLKLGRGAIVELDRKIDDLSDIIVSGRMVGRGEVTIVED 89 >gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] Length = 127 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N L+ +IPV + + + + + L+NL G V+ L+K G+ VDI IN GEI Sbjct: 49 NISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIV 108 Query: 128 IMEEDDTHFGVRVIEIL 144 + +GVR++ I+ Sbjct: 109 ---SKNGQYGVRLLSII 122 >gi|153949693|ref|YP_001399619.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|152961188|gb|ABS48649.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] Length = 137 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D + SPT + + +I ++ N E ++ ++ K L IPV + + + S Sbjct: 19 DESAISPTEHFDSMINSPEIINTPEKTATKTDEQKRK----MSLFSRIPVTLTLEVASVE 74 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I Sbjct: 75 LPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127 >gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3] gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3] Length = 119 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDE---KFGIIISEI 99 >gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] Length = 467 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 16/97 (16%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 +D++S+P D DL+ ++P+++ + L + +V L G V+ L++ Sbjct: 385 LDDVSKP-------------DGSDLLGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNR 431 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 GE V++++N + +A+GE+ +E GVR+I + Sbjct: 432 GPGEPVELSVNGKVVARGELVELE---GQLGVRIITL 465 >gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC 13177] Length = 115 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+ Sbjct: 34 DPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEV 93 Query: 127 TIMEEDDTHFGVRVIEILN 145 + E+ +G+++I++ N Sbjct: 94 VVSGEN---YGLKIIDLEN 109 >gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4] gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4] Length = 123 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++ Sbjct: 4 TESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNEILDS 112 >gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile QCD-66c26] gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP 107932] gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile QCD-76w55] gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile QCD-97b34] gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile QCD-37x79] gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile R20291] gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile QCD-32g58] gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile R20291] Length = 124 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + +N I+++ +++ +++G M + +++NL KG +I L+ + V+I I+N+ +A Sbjct: 36 EVNRNNIQRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLA 95 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 G++ ++ D +FGV++ I++ + Sbjct: 96 YGKVVVV---DLNFGVKITSIVSEE 117 >gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei 668] gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305] gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei DM98] gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia pseudomallei 1655] gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei] gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei 668] gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305] gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia pseudomallei 1655] Length = 115 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+ Sbjct: 34 DPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEV 93 Query: 127 TIMEEDDTHFGVRVIEILN 145 + E+ +G+++I++ N Sbjct: 94 VVSGEN---YGLKIIDLEN 109 >gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2] gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2] Length = 133 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 56/92 (60%), Gaps = 5/92 (5%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++ + +EKS F +++++P+ + + +GS M + ++ L+ V+ L++ + E VD+ Sbjct: 39 TEEEDRIEKS--KFSILLDVPLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLK 96 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +N + IAKGE+ ++ +FG+++ ++ + Sbjct: 97 VNGKVIAKGELYTVK---NNFGLKITHVVTPE 125 >gi|114798836|ref|YP_758975.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] gi|114739010|gb|ABI77135.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] Length = 99 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I ++PV + + +G + + ++ L VI L +V + VD+ I+++ IAKGE ++E Sbjct: 22 IYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDLFIDDKLIAKGE--LVET 79 Query: 132 DDTHFGVRVIEILN 145 DD V+++EI+ Sbjct: 80 DDGQIAVKIVEIIE 93 >gi|332559787|ref|ZP_08414109.1| FliN2 [Rhodobacter sphaeroides WS8N] gi|332277499|gb|EGJ22814.1| FliN2 [Rhodobacter sphaeroides WS8N] Length = 88 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME- 130 + +P+++ I +G + L+ L + V+ LD+RV + V++ + ++ I +GE+T +E Sbjct: 9 LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDRLIGRGELTELEG 68 Query: 131 EDDTHFGVRVIEILN 145 E VR+ E+ N Sbjct: 69 EQAGQLAVRLTEVAN 83 >gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36] gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36] Length = 122 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 NIP+ + + + S + I +L+ LS G VI LDK E +D+ +N Q +A E+ ++ + Sbjct: 46 NIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEVVVV---N 102 Query: 134 THFGVRVIEILN 145 +GV++I++++ Sbjct: 103 GKYGVKLIDVVD 114 >gi|21672366|ref|NP_660433.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008469|sp|Q8KA38|FLIN_BUCAP RecName: Full=Flagellar motor switch protein FliN gi|21622971|gb|AAM67644.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 133 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 7/78 (8%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 FD+ MNI V+ LG ++I +L+N SKG ++ L ++ + + + NN+ IA GEI Sbjct: 55 FDIEMNITVE----LGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVF 110 Query: 129 MEEDDTHFGVRVIEILNA 146 + +G+R+I I N+ Sbjct: 111 ---SNNKYGIRIISINNS 125 >gi|229102363|ref|ZP_04233071.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28] gi|228681010|gb|EEL35179.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28] Length = 109 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 12 EVSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 71 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 72 IGEAIVMDE---KFGIIISEI 89 >gi|77464888|ref|YP_354392.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1] gi|126463730|ref|YP_001044844.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] gi|77389306|gb|ABA80491.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1] gi|126105394|gb|ABN78072.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] Length = 88 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME- 130 + +P+++ I +G + L+ L + V+ LD+RV + V++ + ++ I +GE+T +E Sbjct: 9 LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDKLIGRGELTELEG 68 Query: 131 EDDTHFGVRVIEILN 145 E VR+ E+ N Sbjct: 69 EQAGQLAVRLTEVAN 83 >gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus AH1134] gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264] gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus G9842] gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 200] gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar sotto str. T04001] gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407] gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676] gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185] gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2] gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4] gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24] gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550] gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W] gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876] gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579] gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus AH1134] gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus B4264] gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus G9842] gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876] gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W] gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550] gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24] gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4] gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2] gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185] gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676] gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407] gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar sotto str. T04001] gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 200] gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 119 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDE---KFGIIISEI 99 >gi|238752882|ref|ZP_04614347.1| Flagellar switch protein [Yersinia rohdei ATCC 43380] gi|238708921|gb|EEQ01174.1| Flagellar switch protein [Yersinia rohdei ATCC 43380] Length = 112 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 52 EPISSDS-NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 EPI + S N+ L + L IPV + + + S + +S L+ ++ VI LDK GE Sbjct: 13 EPIEAPSVNDSLHEQQRKISLFSRIPVTLTLEVASVDIPLSELMTVNSDSVIELDKLAGE 72 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +DI +N + E+ ++ E +G+R++ Sbjct: 73 PLDIKVNGIMFGQAEVVVINE---KYGLRIV 100 >gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1] gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1] Length = 288 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N LIM++ + +++ +G M + +++N+ G VI L++ + +DI ++N IA+GE+ Sbjct: 203 NNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHVIAQGEV 262 Query: 127 TIMEEDDTHFGVRVIEI 143 I+ D +FGV++ I Sbjct: 263 VIV---DGNFGVQITSI 276 >gi|254475007|ref|ZP_05088393.1| Surface presentation of antigens protein [Ruegeria sp. R11] gi|214029250|gb|EEB70085.1| Surface presentation of antigens protein [Ruegeria sp. R11] Length = 98 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142 G I +LVNL + ++TLDKRV + VD+ + ++ +A+G++ ME E VR+ E Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89 Query: 143 ILNAQ 147 I + Q Sbjct: 90 IADLQ 94 >gi|75763361|ref|ZP_00743099.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900346|ref|ZP_04064575.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 4222] gi|228938877|ref|ZP_04101477.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar berliner ATCC 10792] gi|229109220|ref|ZP_04238819.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15] gi|74489152|gb|EAO52630.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228674230|gb|EEL29475.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15] gi|228820726|gb|EEM66751.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859233|gb|EEN03664.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 4222] Length = 109 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 12 EAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 71 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 72 IGEAIVMDE---KFGIIISEI 89 >gi|332162917|ref|YP_004299494.1| flagellar switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667147|gb|ADZ43791.1| Flagellar switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862338|emb|CBX72498.1| flagellar motor switch protein fliN [Yersinia enterocolitica W22703] Length = 129 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 13/111 (11%) Query: 43 QKNDVDNISEPISSDS------NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 Q+N+V S PIS S +N L + L IPV + + + S + +S L+++ Sbjct: 19 QENEV---SAPISVASVAAPVVDNSLHEQQRKISLFSRIPVTLTLEVASVDIPLSELMSV 75 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + VI LDK GE +DI IN + E+ ++ E +G+R+I N+Q Sbjct: 76 NNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVNE---KYGLRIIS-FNSQ 122 >gi|260767961|ref|ZP_05876895.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260615991|gb|EEX41176.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315179665|gb|ADT86579.1| Flagellar motor switch/type III secretory pathway protein [Vibrio furnissii NCTC 11218] Length = 122 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 NIPV + + + S + + L+ +G VI LDK GE +D+ +N + E+ ++ Sbjct: 43 FFRNIPVTVTLEVASKAIALGELMKAGEGSVIELDKLNGEPLDVKVNGALLGHAEVVVVN 102 Query: 131 EDDTHFGVRVIEILNA 146 + +G+R+I++L++ Sbjct: 103 D---KYGLRLIDVLDS 115 >gi|22127343|ref|NP_670766.1| flagellar switch protein [Yersinia pestis KIM 10] gi|45442781|ref|NP_994320.1| flagellar switch protein [Yersinia pestis biovar Microtus str. 91001] gi|51597652|ref|YP_071843.1| flagellar switch protein [Yersinia pseudotuberculosis IP 32953] gi|108809074|ref|YP_652990.1| flagellar switch protein [Yersinia pestis Antiqua] gi|108810733|ref|YP_646500.1| flagellar switch protein [Yersinia pestis Nepal516] gi|145597802|ref|YP_001161878.1| flagellar switch protein [Yersinia pestis Pestoides F] gi|150260264|ref|ZP_01916992.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis CA88-4125] gi|165925127|ref|ZP_02220959.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165939068|ref|ZP_02227620.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|166008730|ref|ZP_02229628.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166212179|ref|ZP_02238214.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|167399118|ref|ZP_02304642.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419195|ref|ZP_02310948.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425214|ref|ZP_02316967.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466356|ref|ZP_02331060.1| flagellar switch protein [Yersinia pestis FV-1] gi|170022956|ref|YP_001719461.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186896786|ref|YP_001873898.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|218927897|ref|YP_002345772.1| flagellar switch protein [Yersinia pestis CO92] gi|229837393|ref|ZP_04457556.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A] gi|229840606|ref|ZP_04460765.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842843|ref|ZP_04462995.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. India 195] gi|229900930|ref|ZP_04516054.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516] gi|270487689|ref|ZP_06204763.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|294502774|ref|YP_003566836.1| flagellar switch protein [Yersinia pestis Z176003] gi|21960426|gb|AAM87017.1|AE013950_2 hypothetical [Yersinia pestis KIM 10] gi|45437647|gb|AAS63197.1| flagellar switch protein [Yersinia pestis biovar Microtus str. 91001] gi|51590934|emb|CAH22590.1| Flagellar switch protein [Yersinia pseudotuberculosis IP 32953] gi|108774381|gb|ABG16900.1| flagellar switch protein [Yersinia pestis Nepal516] gi|108780987|gb|ABG15045.1| flagellar switch protein [Yersinia pestis Antiqua] gi|115346508|emb|CAL19384.1| flagellar switch protein [Yersinia pestis CO92] gi|145209498|gb|ABP38905.1| flagellar switch protein [Yersinia pestis Pestoides F] gi|149289672|gb|EDM39749.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis CA88-4125] gi|165913024|gb|EDR31649.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|165923327|gb|EDR40478.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165992069|gb|EDR44370.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166206925|gb|EDR51405.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|166963189|gb|EDR59210.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051622|gb|EDR63030.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055977|gb|EDR65758.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749490|gb|ACA67008.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186699812|gb|ACC90441.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|229682269|gb|EEO78361.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516] gi|229690110|gb|EEO82167.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. India 195] gi|229696972|gb|EEO87019.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705516|gb|EEO91526.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A] gi|262360806|gb|ACY57527.1| flagellar switch protein [Yersinia pestis D106004] gi|262364751|gb|ACY61308.1| flagellar switch protein [Yersinia pestis D182038] gi|270336193|gb|EFA46970.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|294353233|gb|ADE63574.1| flagellar switch protein [Yersinia pestis Z176003] gi|320016726|gb|ADW00298.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 137 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D + SPT + + +I ++ N E ++ ++ K L IPV + + + S Sbjct: 19 DESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRK----MSLFSRIPVTLTLEVASVE 74 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I Sbjct: 75 IPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127 >gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271] gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271] Length = 119 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|162419818|ref|YP_001604860.1| flagellar switch protein [Yersinia pestis Angola] gi|162352633|gb|ABX86581.1| flagellar motor switch protein FliN [Yersinia pestis Angola] Length = 137 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D + SPT + + +I ++ N E ++ ++ K L IPV + + + S Sbjct: 19 DESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRK----MSLFSRIPVTLTLEVASVE 74 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I Sbjct: 75 IPLSELLTVNNDSVIELDKLAGEPLDIQVNGIMFGQAEVVVINE---KYGLRIINI 127 >gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 119 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ +++ K+ Sbjct: 22 EASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDE---KFGIIISEI 99 >gi|159045806|ref|YP_001534600.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12] gi|157913566|gb|ABV94999.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12] Length = 89 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 5/78 (6%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 ++ +P+ + + +G + L+ L K V+ LDKR+ + V++ + IA+G ++EE Sbjct: 12 LVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARG---VLEE 68 Query: 132 D-DTH-FGVRVIEILNAQ 147 D D+H VR+ E+++ + Sbjct: 69 DADSHRLSVRLTEVISPE 86 >gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] Length = 104 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S ++ I+++ V+ LG + ++ ++ L KG +I L K GESV+ +N + + Sbjct: 12 ELSWMDYSGILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVESYVNGRILG 71 Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146 KGE+ + E+ + +R+ E+L++ Sbjct: 72 KGEVMVYEK---NLAIRINEVLDS 92 >gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae 12198] gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae 12198] Length = 279 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 55/89 (61%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S+ N+ ++ N +++++ + +++ +G M + ++ ++ G VI L++ E ++I Sbjct: 182 SAPGQNLSQEEMKNIGMLLDVKLNVKVRIGQKRMLLKDVTSMDIGSVIELNQLANEPLEI 241 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 I+++ IAKGE+ I+ D +FG++V EI Sbjct: 242 LIDDKVIAKGEVVIV---DGNFGIQVTEI 267 >gi|315498407|ref|YP_004087211.1| surface presentation of antigens (spoa) protein [Asticcacaulis excentricus CB 48] gi|315416419|gb|ADU13060.1| surface presentation of antigens (SPOA) protein [Asticcacaulis excentricus CB 48] Length = 93 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 ++ ++LG + + L+ + +G VI LD R + V I NN +A+GEI I EE Sbjct: 20 EISVLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEE 73 >gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] Length = 101 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +EK ++ +++ V + +G M I +++L +G +I L K GES ++ +N + I Sbjct: 8 VEKLIPDYSNLIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVYVNGRII 67 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 KGE+ + E+ + +R+ E+L+A Sbjct: 68 GKGEVMVYEK---NLAIRLNEVLDA 89 >gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7] Length = 123 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273] gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272] gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272] gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273] Length = 119 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ +++ K+ Sbjct: 22 EAEKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDIKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE T+M+E FG+ + EI Sbjct: 82 IGEATVMDEK---FGIIISEI 99 >gi|152975143|ref|YP_001374660.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023895|gb|ABS21665.1| CheC, inhibitor of MCP methylation [Bacillus cytotoxicus NVH 391-98] Length = 554 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 9/104 (8%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLI-----MNIPVKMQIILGSCCMQISNLVNL 96 I++ +V+ I EP + + +LE T + I N+ + ++ + GS I ++++L Sbjct: 451 IKEENVEEIPEP-AVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILSL 509 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + D + LD+ V E + I +NN +A GE+ + D FGV+V Sbjct: 510 HENDAVVLDEEVDEPIRIYVNNVLVAYGELVNV---DGFFGVKV 550 >gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018] gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22] gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018] gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22] Length = 95 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 44/70 (62%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +E S +DL+++ + + ++LGS + + + L++GD+I+L K G +I +N++ I Sbjct: 1 MEISERVYDLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRII 60 Query: 122 AKGEITIMEE 131 G+I +++E Sbjct: 61 GTGDIIVIDE 70 >gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum JL354] Length = 118 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D + LI I V++ + LG + + ++ L + ++ LD+ E +DI +N + IA+GE+ Sbjct: 6 DGYGLIQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEV 65 Query: 127 TIMEEDDTHFGVRVIEILNA 146 F +R++E+ A Sbjct: 66 V---AQGNRFAIRILELSGA 82 >gi|207109202|ref|ZP_03243364.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_CA4C1] Length = 78 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 7 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 63 Query: 143 ILNA 146 IL++ Sbjct: 64 ILDS 67 >gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 128 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LI +IPV++ + + + + ++++ VI LDK+ GE VDI IN G I Sbjct: 49 NMGLIRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNII 108 Query: 128 IMEEDDTHFGVRVIEILN 145 I D +GV+V+ ++N Sbjct: 109 I---QDGKYGVQVLALVN 123 >gi|163738044|ref|ZP_02145460.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] gi|163742560|ref|ZP_02149946.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis 2.10] gi|161384145|gb|EDQ08528.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis 2.10] gi|161388660|gb|EDQ13013.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] Length = 98 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142 G I +LVNL + ++TLDKRV + VD+ + ++ +A+G++ ME E VR+ E Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89 Query: 143 ILNAQ 147 I + Q Sbjct: 90 IADLQ 94 >gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180] gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180] Length = 123 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908] gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24] gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 123 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|229132592|ref|ZP_04261440.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196] gi|228650824|gb|EEL06811.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196] Length = 119 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + D + +I +++ + LG +++ ++ L GDV+ ++K +G VD+ +++ K+ Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSIKLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99] gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27] gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12] gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128] gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38] gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8] gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27] gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12] gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128] gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38] gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8] gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7] Length = 123 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|56695120|ref|YP_165467.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3] gi|56676857|gb|AAV93523.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3] Length = 109 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI-TIMEED 132 ++P+++ + +G I +L+ L + V+TLDKRV + VD+ + ++ +A+G++ + E Sbjct: 31 SVPIEITVSVGRARPLIRDLIGLGENAVLTLDKRVEDPVDLYVGDRLVARGQLEELTGEQ 90 Query: 133 DTHFGVRVIEI 143 VR+ EI Sbjct: 91 AGQLAVRLTEI 101 >gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803] gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803] Length = 119 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + D + +I + + + LG + + ++ L GDV+ ++K +G VD+ ++N K+ Sbjct: 22 EAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDE---KFGIIISEI 99 >gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818] gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG 18818] gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG 18818] Length = 116 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 LE N+ ++++ V LG+ + + ++ KG +I L K GES++ IN + I Sbjct: 24 LEDMMKNYTGLLDMEVIFNAELGNTKIALGEILRFEKGSIIDLGKPAGESIETFINGRVI 83 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 KGE+ + E + +R+ EIL++ Sbjct: 84 GKGEVMVYERN---LAIRINEILDS 105 >gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10] gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10] gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d] gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20] gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464] gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16] gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30] gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57] gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83] Length = 123 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470] gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470] gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51] gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A] gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32] Length = 123 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|329850252|ref|ZP_08265097.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum C19] gi|328840567|gb|EGF90138.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum C19] Length = 71 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 ++LG + + L+ + +G VI LD R + V I NN +A+GEI I EE Sbjct: 1 MLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEE 51 >gi|254418697|ref|ZP_05032421.1| Surface presentation of antigens protein, putative [Brevundimonas sp. BAL3] gi|196184874|gb|EDX79850.1| Surface presentation of antigens protein, putative [Brevundimonas sp. BAL3] Length = 83 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V++ ++LG + +S L+ + +G VI LD G+ V I NN +A+GEI I Sbjct: 9 VEISVVLGRMVLPMSQLLRMGRGAVIPLDASEGDEVWILANNHPVARGEIEI 60 >gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1] gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75] Length = 123 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695] gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695] Length = 123 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum CMR15] Length = 132 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 ++ + +G+ + + L+ V+ LD +V + VD+ + + +A+G++ ++E HF Sbjct: 63 AQLTVCVGTATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDE---HF 119 Query: 137 GVRVIEI 143 GVR+ E+ Sbjct: 120 GVRITEL 126 >gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52] Length = 123 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1] gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1] Length = 123 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio yellowstonii DSM 11347] Length = 322 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 I N PV+++ ILG + L++L GD++TL +R+ E VD+ + KG++ Sbjct: 253 IKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVEGVPKFKGKL 307 >gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] Length = 123 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + +R+ E Sbjct: 52 LGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERN---LAIRLNE 108 Query: 143 ILNA 146 IL++ Sbjct: 109 ILDS 112 >gi|260779322|ref|ZP_05888214.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] gi|260605486|gb|EEX31781.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] Length = 122 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + NIPV + + + S + + +L+ +G VI LDK GE +D+ +N + E+ Sbjct: 40 DLSFFKNIPVTVTLEVASKDIALGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVV 99 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ E +G+R+I+I+++ Sbjct: 100 VVNE---KYGLRLIDIVDS 115 >gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1] gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5] gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5] gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1] Length = 293 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 20/122 (16%) Query: 39 EMLIQKNDVDNISEPISS----------------DSNNILEKS-TDNFDLIMNIPVKMQI 81 E +K + NIS+PI D ++ LE++ N +++++I + +++ Sbjct: 162 ETFKKKEVIKNISKPIQGPAMPNIPVVQHNNDHVDGDHPLEQTEIRNINMLLDIKLNVRV 221 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +G M + ++V++ G V+ L++ V + ++I ++++ IAKGE+ I+ D +FG+++ Sbjct: 222 RIGQKKMILKDVVSMDIGSVVELNQMVNDPLEILVDDKVIAKGEVVIV---DGNFGIQIT 278 Query: 142 EI 143 EI Sbjct: 279 EI 280 >gi|327478783|gb|AEA82093.1| flagellar motor switch protein FliN [Pseudomonas stutzeri DSM 4166] Length = 123 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV + + + S + + L+ VI LDK GE +D+ +N AK E+ +M + Sbjct: 48 IPVNVTLEVASAEISLKELMECDTSSVIVLDKLAGEPLDVKVNGTLFAKAEVVVM---NG 104 Query: 135 HFGVRVIEI 143 ++G+R++E+ Sbjct: 105 NYGLRIVEL 113 >gi|149203109|ref|ZP_01880080.1| surface presentation of antigens (SPOA) protein [Roseovarius sp. TM1035] gi|149143655|gb|EDM31691.1| surface presentation of antigens (SPOA) protein [Roseovarius sp. TM1035] Length = 98 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132 ++P+++ + +G I +L+ L K V+ LD+RV ++V++ + + IA+G++ + D Sbjct: 21 SVPIEITVSVGKARPLIRDLLKLGKNAVLVLDRRVDDAVELYVGERLIARGQLEELAGDQ 80 Query: 133 DTHFGVRVIEILNAQ 147 VRV E+ N Q Sbjct: 81 QGQIAVRVTEVANLQ 95 >gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067] Length = 502 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPVK++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKG---ILVRVD 490 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 491 DHFGIQMTELVR 502 >gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 502 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPVK++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKG---ILVRVD 490 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 491 DHFGIQMTELVR 502 >gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048] gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621] gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis KBAB4] gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621] gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048] Length = 119 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD+ +++ K+ Sbjct: 22 EAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDMKVG 81 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE +M+E FG+ + EI Sbjct: 82 IGEAIVMDEK---FGIIISEI 99 >gi|149189861|ref|ZP_01868141.1| flagellar motor switch protein [Vibrio shilonii AK1] gi|148836347|gb|EDL53304.1| flagellar motor switch protein [Vibrio shilonii AK1] Length = 122 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +S + NIPV + + + S + + +L++ +G +I LDK GE +D+ +N + Sbjct: 36 QSERDISFFKNIPVTVTLEVASKEVALGDLMSAGEGSIIELDKLNGEPLDVKVNGSLMGH 95 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 E+ ++ E +G+R+I+++++ Sbjct: 96 AEVVVVNE---KYGLRLIDVVDS 115 >gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J1-175] gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262] gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes] gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816] Length = 99 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D Sbjct: 32 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88 Query: 134 THFGVRVIEI 143 +FG+ + EI Sbjct: 89 ENFGIVISEI 98 >gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes Clip81459] gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J1-208] gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes L99] gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208] gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378] gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023] gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 100 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D Sbjct: 33 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 89 Query: 134 THFGVRVIEI 143 +FG+ + EI Sbjct: 90 ENFGIVISEI 99 >gi|313673294|ref|YP_004051405.1| surface presentation of antigens (spoa) protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940050|gb|ADR19242.1| surface presentation of antigens (SPOA) protein [Calditerrivibrio nitroreducens DSM 19672] Length = 94 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 7/74 (9%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D+IM++ V+ LG I L++ +G +I L+K GE VD+ +NN+ +A GEI ++ Sbjct: 12 DVIMDVTVE----LGRKLCTIGELLSWEQGTIIKLNKTSGEVVDMLVNNKPLAIGEIMVL 67 Query: 130 EEDDTHFGVRVIEI 143 +E F R+ +I Sbjct: 68 DE---KFAFRLSDI 78 >gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces limnophilus DSM 3776] gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces limnophilus DSM 3776] Length = 396 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V++ + L M ++ L+ LS G ++T K + +DI I N++ A+GE + E HF Sbjct: 320 VQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQGEAVKIGE---HF 376 Query: 137 GVRV 140 GV+V Sbjct: 377 GVKV 380 >gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland 1988] gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S] gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161] gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003] gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e] gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes] gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] Length = 99 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D Sbjct: 32 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88 Query: 134 THFGVRVIEI 143 +FG+ + EI Sbjct: 89 ENFGIVISEI 98 >gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J2-064] Length = 99 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D Sbjct: 32 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88 Query: 134 THFGVRVIEI 143 +FG+ + EI Sbjct: 89 ENFGIVISEI 98 >gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] Length = 99 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M Sbjct: 30 VENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM-- 87 Query: 132 DDTHFGVRVIEI 143 D +FG+ + EI Sbjct: 88 -DENFGIVISEI 98 >gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans DSM 574] gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans DSM 574] Length = 131 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 LG +++ ++NL G VI L+K G++++I N++K AKGE+ ++ + F VR+ Sbjct: 60 LGETTLKLREVLNLDVGSVIDLNKSAGDAINIYFNDRKAAKGEVIVVNDS---FAVRI 114 >gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] Length = 100 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D Sbjct: 33 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 89 Query: 134 THFGVRVIEI 143 +FG+ + EI Sbjct: 90 ENFGIVISEI 99 >gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 99 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M D Sbjct: 32 NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM---D 88 Query: 134 THFGVRVIEI 143 +FG+ + EI Sbjct: 89 ENFGIVISEI 98 >gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] Length = 165 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IP+ + + +G M + L++L G+ I LD R +D+ +N ++AKGE+ + E Sbjct: 98 DIPLSIILEVGRLKMSMQTLMDLQPGNTIELDIRPESGIDLVVNGSRVAKGELLQVGE-- 155 Query: 134 THFGVRVIEI 143 + G+R++E+ Sbjct: 156 -NLGIRILEL 164 >gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 99 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M Sbjct: 30 VENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM-- 87 Query: 132 DDTHFGVRVIEI 143 D +FG+ + EI Sbjct: 88 -DENFGIVISEI 98 >gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546] gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546] Length = 122 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 NIPV + + + S + + +L+ +G VI LDK GE +D+ +N + E+ ++ Sbjct: 43 FFKNIPVTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVN 102 Query: 131 EDDTHFGVRVIEILNAQ 147 E +G+R+I+++++ Sbjct: 103 E---KYGLRLIDVVDSA 116 >gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] Length = 98 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + T + + NI V + + LG M + ++ L+ GD++ ++K+ G V+I ++ +K+ Sbjct: 21 RDTGDLKQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFLDEKKVGI 80 Query: 124 GEITIMEEDDTHFGVRVIEI 143 GE +M D +FG+ + EI Sbjct: 81 GEAILM---DENFGIVISEI 97 >gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes Clip81459] gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175] gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816] Length = 515 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/98 (22%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + ++EP+ E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + Sbjct: 421 EKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKES 480 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + E + + +N I KG I+ D HFG+++ E++ Sbjct: 481 MNEPLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515 >gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067] gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171] Length = 99 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + NI V + + LG M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M Sbjct: 30 VENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM-- 87 Query: 132 DDTHFGVRVIEI 143 D +FG+ + EI Sbjct: 88 -DENFGIVISEI 98 >gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] Length = 504 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/98 (22%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + ++EP+ E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + Sbjct: 410 EKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKES 469 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + E + + +N I KG I+ D HFG+++ E++ Sbjct: 470 MNEPLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 504 >gi|258404715|ref|YP_003197457.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM 5692] gi|257796942|gb|ACV67879.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM 5692] Length = 109 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +P+++ LG+ + + +L+ L +G VI L+K GE +D+ +N++ IA+ E ++ E Sbjct: 33 VPLQVSAELGTTRILVKDLLQLREGSVIELEKLAGEPLDVFVNSRLIARAEAVVVNE--- 89 Query: 135 HFGVRVIEILN 145 G+R+ ++++ Sbjct: 90 KIGLRLTDVVS 100 >gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM 1251] gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251] Length = 283 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++ + +++ +G M + +++N+ G VI L++ + +DI +++ IA+GE+ Sbjct: 199 NIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDDNVIAEGEVV 258 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FGV++ I Sbjct: 259 IV---DGNFGVQITSI 271 >gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171] Length = 502 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPVK++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKG---ILVRVD 490 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 491 DHFGIQMTELVR 502 >gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 120 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 54/98 (55%), Gaps = 9/98 (9%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 +N+SEP + + E+ + NIPV + + + S + + +L+ +G VI LDK Sbjct: 24 ENLSEPAYTP---LPER---DLSFFKNIPVTVTLEVASKEVALGDLMKAGEGSVIELDKM 77 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE +D+ +N + E+ ++ + +G+R+I++++ Sbjct: 78 NGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVVD 112 >gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM 1251] gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas denitrificans DSM 1251] Length = 111 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 3/84 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S ++ ++++ V+ LG + + ++ L KG +I L K GESV+ +N + + Sbjct: 20 ELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNGRILG 79 Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146 +GE+ + E++ +R+ E+L++ Sbjct: 80 RGEVMVYEKN---LAIRINEVLDS 100 >gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1] gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1] Length = 102 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V++ + LG M + +++ + +G V+ L++ E +D+T N + +A+GE+ D F Sbjct: 16 VRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVI---AQDGRF 72 Query: 137 GVRVIEILN 145 +R++E++ Sbjct: 73 ALRIVELVG 81 >gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum lavamentivorans DS-1] gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum lavamentivorans DS-1] Length = 78 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 N+ V++ ++LG M I L+ + +G VI L R E + + NN IA+GEI + E Sbjct: 6 NVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIVQGE 63 >gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH] gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia profundicola AmH] Length = 103 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + + ++ L KG VI L K GES ++ IN + I KGE+ + E+ + +R+ E Sbjct: 32 LGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRIIGKGEVMVYEK---NLAIRLNE 88 Query: 143 ILNA 146 +L+A Sbjct: 89 VLDA 92 >gi|85706152|ref|ZP_01037247.1| flagellar motor switch protein FliN [Roseovarius sp. 217] gi|85669316|gb|EAQ24182.1| flagellar motor switch protein FliN [Roseovarius sp. 217] Length = 100 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132 ++P+++ + +G I +L+ L K V+ LD+RV + V++ + + +A+G + ++ D Sbjct: 22 SVPIEITVSVGKARPSIRDLLKLGKNAVLVLDRRVDDMVELYVGERLVARGRLEELDGDQ 81 Query: 133 DTHFGVRVIEILNAQ 147 VRV E+ N Q Sbjct: 82 QGQIAVRVTEVANLQ 96 >gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp. fetus 82-40] gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus 82-40] Length = 276 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++ + +++ +GS M + +++++ G VI L++ + +++ I ++++A GE+ Sbjct: 193 NIGLIMDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELNQLANDPLEVLIGDKQVALGEVV 252 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FGV++ EI Sbjct: 253 IV---DGNFGVQITEI 265 >gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion translocase SctQ) [Candidatus Protochlamydia amoebophila UWE25] Length = 445 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 17/112 (15%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 SSP NN+ SS +++I E + IPV + + +G M + Sbjct: 349 SSPKNNASQ--------------SSPASSITENTKTGLITPNQIPVNLTVEVGRIQMSMD 394 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +L+ L G+++ L+ + + VD+TIN + + +GE+ + E GVRV+E+ Sbjct: 395 HLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEV---LGVRVLEL 443 >gi|157147124|ref|YP_001454443.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895] gi|157084329|gb|ABV14007.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895] Length = 132 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 L IPV + + + S + ++ L++++ V+ LDK GE +DI +N K E+ ++ Sbjct: 53 LFSRIPVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAEVVVLN 112 Query: 131 EDDTHFGVRVIEI 143 + +G+R+IE Sbjct: 113 D---KYGLRIIEF 122 >gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 101 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + +LI ++ V++ + LG M + L L GDV+ L ++V E + ++ + +A+G + Sbjct: 28 DMNLIKHVVVELVVQLGHASMSVDELFALKAGDVVKLLEQVHEPASLCLDGKPVARGNLV 87 Query: 128 IMEEDDTHFGVRVIEIL 144 + D +FG+++ EIL Sbjct: 88 AV---DDNFGIQLTEIL 101 >gi|325107429|ref|YP_004268497.1| surface presentation of antigens (SPOA) protein [Planctomyces brasiliensis DSM 5305] gi|324967697|gb|ADY58475.1| surface presentation of antigens (SPOA) protein [Planctomyces brasiliensis DSM 5305] Length = 295 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +MN+ VK+ + L +++S L+NL G ++ K + +D+ +NN+ A+GE + E Sbjct: 214 LMNLNVKVSVRLAEMKIELSTLINLCPGTLLVFPKSCDDLLDLYVNNRLYAQGEAVKIGE 273 Query: 132 DDTHFGVRVIEI 143 FG++V EI Sbjct: 274 ---KFGLKVNEI 282 >gi|255262994|ref|ZP_05342336.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62] gi|255105329|gb|EET48003.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62] Length = 94 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P+++ I +G + L++L++ ++ LDK + + VDI + ++ IA+GE+ +E+ + Sbjct: 15 DVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDTN 74 Query: 134 -THFGVRVIEILNA 146 + VR+ EI++ Sbjct: 75 ISQLAVRLTEIIDP 88 >gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 121 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV + + + S + + L+ +G VI LDK GE +D+ +N + E+ ++ E Sbjct: 46 IPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINE--- 102 Query: 135 HFGVRVIEILNA 146 +G+R+I+++++ Sbjct: 103 KYGLRLIDVVDS 114 >gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] Length = 515 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + + +N I KG I+ D HFG+++ E++ Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515 >gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM 1740] gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes] Length = 289 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 54/84 (64%), Gaps = 3/84 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 N+ E N +++++ +++++ +G M + +++++ G V+ L++ + ++I ++++ Sbjct: 197 NLSEPEMKNIGMLLDVKLQVKVRIGQKKMLLKDVISMDIGSVVELNQLANDPLEILVDDK 256 Query: 120 KIAKGEITIMEEDDTHFGVRVIEI 143 IAKGE+ I+ D +FG+++ EI Sbjct: 257 VIAKGEVVIV---DGNFGIQITEI 277 >gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori SouthAfrica7] Length = 282 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 60/101 (59%), Gaps = 12/101 (11%) Query: 52 EPISSDSNNILEKSTD---------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 EP S++S K+ D N +++++ + +++ +G M + ++V++ G V+ Sbjct: 173 EPESAESATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVV 232 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 LD+ V + ++I ++++ IAKGE+ I+ D +FG+++ +I Sbjct: 233 ELDQLVNDPLEILVDDKVIAKGEVVIV---DGNFGIQITDI 270 >gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28] gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e] gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] Length = 515 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + + +N I KG I+ D HFG+++ E++ Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515 >gi|224498782|ref|ZP_03667131.1| flagellar motor switch protein [Listeria monocytogenes Finland 1988] Length = 515 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + + +N I KG I+ D HFG+++ E++ Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515 >gi|254830309|ref|ZP_05234964.1| flagellar motor switch protein [Listeria monocytogenes 10403S] Length = 515 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + + +N I KG I+ D HFG+++ E++ Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515 >gi|255026112|ref|ZP_05298098.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003] Length = 515 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + + +N I KG I+ D HFG+++ E++ Sbjct: 484 PLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 515 >gi|260429524|ref|ZP_05783501.1| flagellar motor switch protein FliN [Citreicella sp. SE45] gi|260420147|gb|EEX13400.1| flagellar motor switch protein FliN [Citreicella sp. SE45] Length = 95 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-ED 132 ++P+++ + +G + +L+ L +G V+TLDKR+ + V++ + ++ I G + ++E + Sbjct: 18 SVPIEITVSVGRARPLVRDLLKLGEGSVLTLDKRLEDPVELYVGDRLIGIGALEVLEGGE 77 Query: 133 DTHFGVRVIEILN 145 + VR+ E+++ Sbjct: 78 NGQLAVRLTEVVD 90 >gi|16799783|ref|NP_470051.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|16413160|emb|CAC95940.1| lin0708 [Listeria innocua Clip11262] Length = 513 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/104 (21%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 I++++ ++P+ + L ++ ++ +IPV ++++ G+ +++ ++ + DV Sbjct: 416 IKEHETKEPAQPVVMEEKETL---SEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDV 472 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I L + + E + + +N I KG I+ D HFG+++ E++ Sbjct: 473 IILKESMNEPLVLALNGVTIGKG---ILVRVDDHFGIQMTELVR 513 >gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128] gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8] gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128] gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8] Length = 287 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57] Length = 287 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120] Length = 514 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 446 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 502 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 503 DHFGIQMTELVR 514 >gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori Gambia94/24] Length = 285 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 201 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 260 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 261 IV---DGNFGIQITDI 273 >gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas mendocina NK-01] gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas mendocina NK-01] Length = 279 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I +PV++ ++ S M +S ++ L GD++ + R+ E D+ IN QK+ +G I E+ Sbjct: 209 IRQLPVRLDCVVASLQMPLSQVLALRPGDILPM--RLLERCDVQINQQKLFRG--AIFED 264 Query: 132 DDTHF 136 D + F Sbjct: 265 DGSLF 269 >gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908] gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 285 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 201 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 260 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 261 IV---DGNFGIQITDI 273 >gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826] gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826] Length = 284 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++ + M++ +GS M + +++ + G VI L++ + ++I I ++ IA GE+ Sbjct: 201 NIGLIMDVRLPMRVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILIGDKVIALGEVV 260 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 261 II---DGNFGIQITQI 273 >gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] Length = 504 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 436 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 492 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 493 DHFGIQMTELVR 504 >gi|126738562|ref|ZP_01754267.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6] gi|126720361|gb|EBA17067.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6] Length = 98 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 +S N+ K+TD + +++PV++ + +G I +LV L + ++TLDKRV + VD+ + Sbjct: 3 ESENLNMKATDASNPFVSVPVEVVVSVGKARPLIRDLVGLGENAILTLDKRVEDPVDLYV 62 Query: 117 NNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147 ++ +A+G++ M+ E VR+ EI + Q Sbjct: 63 GDRLVARGQLEEMDGEQAGQLAVRLTEIADLQ 94 >gi|290893997|ref|ZP_06556972.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|290556443|gb|EFD89982.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] Length = 504 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 436 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 492 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 493 DHFGIQMTELVR 504 >gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99] gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220] gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 515 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 447 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 503 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 504 DHFGIQMTELVR 515 >gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99] gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] Length = 285 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 201 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 260 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 261 IV---DGNFGIQITDI 273 >gi|254900064|ref|ZP_05259988.1| flagellar motor switch protein [Listeria monocytogenes J0161] gi|254911383|ref|ZP_05261395.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] gi|254935710|ref|ZP_05267407.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|258608293|gb|EEW20901.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|293589320|gb|EFF97654.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] Length = 515 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E Sbjct: 424 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 483 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + + +N I KG I+ D HFG+++ E++ Sbjct: 484 PLVLALNGVMIGKG---ILVRVDDHFGIQMTELVR 515 >gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4] gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4] Length = 287 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|47095266|ref|ZP_00232877.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|47016337|gb|EAL07259.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] Length = 504 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +EPI E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + E Sbjct: 413 AEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNE 472 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + + +N I KG I+ D HFG+++ E++ Sbjct: 473 PLVLALNGVMIGKG---ILVRVDDHFGIQMTELVR 504 >gi|313624702|gb|EFR94658.1| flagellar motor switch protein [Listeria innocua FSL J1-023] Length = 398 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 330 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 386 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 387 DHFGIQMTELVR 398 >gi|313620056|gb|EFR91570.1| flagellar motor switch protein [Listeria innocua FSL S4-378] Length = 398 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 330 DIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVD 386 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 387 DHFGIQMTELVR 398 >gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum DSM 6946] gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum DSM 6946] Length = 286 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +LI ++ + +++ +GS M + +++++ G VI LD+ + ++I + ++ IA GE+ Sbjct: 203 NIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEILVGDKVIAMGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FGV++ EI Sbjct: 263 IV---DGNFGVQIGEI 275 >gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489] gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489] Length = 284 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/103 (22%), Positives = 61/103 (59%), Gaps = 13/103 (12%) Query: 51 SEPISSDSNNILEKSTDNFDL----------IMNIPVKMQIILGSCCMQISNLVNLSKGD 100 S+ ++ D+N E + F+L ++++ +++++ +G M + +++ + G Sbjct: 174 SDNVALDANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGS 233 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V+ L++ +S+++ ++++ IAKGE+ I+ D +FG+++ EI Sbjct: 234 VVELNQLANDSLEVLVDDKVIAKGEVVIV---DGNFGIQITEI 273 >gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str. Sheeba] gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] Length = 283 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 199 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 258 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 259 IV---DGNFGIQITDI 271 >gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus DSM 13965] gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus DSM 13965] Length = 321 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 31/53 (58%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + +P+ +Q++LG + + L++L+ G V+ LD R G VDI + + +G Sbjct: 233 LRQVPLPVQVVLGRAQLTVRQLLDLAPGHVLPLDTRAGSLVDILVGGRLKFRG 285 >gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Dethiobacter alkaliphilus AHT 1] gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Dethiobacter alkaliphilus AHT 1] Length = 541 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 SS + + E+ DLI +IPV++ +LG + + L+ G V+ L VDI Sbjct: 449 SSPESTLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDI 508 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 N + +A+GE+ E FG+++ EI+ Sbjct: 509 LANGKLVARGEVVHYNE---RFGIKITEIM 535 >gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83] Length = 287 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10] gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10] Length = 287 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30] Length = 287 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16] Length = 287 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27] gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27] Length = 287 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51] Length = 287 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38] gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38] Length = 287 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A] Length = 287 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori Lithuania75] Length = 287 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470] gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470] Length = 288 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 204 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 263 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 264 IV---DGNFGIQITDI 276 >gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20] Length = 290 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 266 IV---DGNFGIQITDI 278 >gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d] Length = 287 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1] gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1] Length = 99 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + V + ++LG+C M I ++ LS+G +I LD + V + NN IA G + + D Sbjct: 24 VTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVKVLANNLPIANGVVLV---DRN 80 Query: 135 HFGVRVIEIL 144 V V E+L Sbjct: 81 RIAVEVKEML 90 >gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1] gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1] Length = 287 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464] Length = 290 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 266 IV---DGNFGIQITDI 278 >gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori HPKX_438_AG0C1] Length = 290 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 266 IV---DGNFGIQITDI 278 >gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32] Length = 287 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52] Length = 290 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 266 IV---DGNFGIQITDI 278 >gi|254465587|ref|ZP_05078998.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] gi|206686495|gb|EDZ46977.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] Length = 98 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142 G I +LV+L + ++TLDKRV + VD+ + ++ +A+G++ +E E VR+ E Sbjct: 30 GKARPLIRDLVSLGENAILTLDKRVEDPVDLYVGDRLVARGQLEELEGEQAGQLAVRLTE 89 Query: 143 ILNAQ 147 I + Q Sbjct: 90 IADLQ 94 >gi|313610118|gb|EFR85441.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208] Length = 515 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D Sbjct: 448 IPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVDD 504 Query: 135 HFGVRVIEILN 145 HFG+++ E++ Sbjct: 505 HFGIQMTELVR 515 >gi|238762375|ref|ZP_04623346.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638] gi|238699360|gb|EEP92106.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638] Length = 105 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 L IPV + + + S + +S L++++ VI LDK GE +DI IN + E+ ++ Sbjct: 26 LFSRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVN 85 Query: 131 EDDTHFGVRVIEILNAQ 147 E +G+R+I N+Q Sbjct: 86 E---KYGLRIIS-FNSQ 98 >gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7] Length = 290 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 206 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 265 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 266 IV---DGNFGIQITDI 278 >gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695] gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695] Length = 287 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM 16994] gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM 16994] Length = 288 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 3/81 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E N LIM + + +++ +G M + +++++ G VI L++ + +DI +++ IA Sbjct: 199 EGEMKNIGLIMGVKLPVRVRIGKKKMLLKDVLSMDIGSVIELNQLANDPLDILVDDHVIA 258 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 +GE+ I+ D +FGV++ I Sbjct: 259 QGEVVIV---DGNFGVQITSI 276 >gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12] gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12] Length = 287 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180] gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180] Length = 287 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 203 NISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 IV---DGNFGIQITDI 275 >gi|116872089|ref|YP_848870.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740967|emb|CAK20087.1| flagellar motor switch domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 512 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV ++++ G+ +++ ++ + DV+ L + + E + + +N I KG I+ D Sbjct: 444 DIPVTLEVVFGTAKVKLEKFISWCEKDVVILKESMNEPLVLALNGVTIGKG---ILVRVD 500 Query: 134 THFGVRVIEILN 145 HFG+++ E++ Sbjct: 501 DHFGIQMTELVR 512 >gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] Length = 109 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 ++ +L+K D++ N+ V+ LG M + ++ L +G ++ L K GESVD+ + Sbjct: 13 ENEELLKKLEWYGDIMFNLDVE----LGRIAMTLREVLELKEGSIVELKKTAGESVDVMV 68 Query: 117 NNQKIAKGEITIME 130 N +A EI ++E Sbjct: 69 NQCLLATAEIVVIE 82 >gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC30] gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC10] gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC20] gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC30] gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC10] gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC20] Length = 332 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++ E Sbjct: 243 QPVNQDDSRELQKSLNG------VGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKITEP 296 Query: 112 VDITINNQKIAKGE 125 ++ I+ + + + Sbjct: 297 LETFIDGKPYFRAK 310 >gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2] gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2] Length = 332 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++ E Sbjct: 243 QPVNQDDSRELQKSLNG------VGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKITEP 296 Query: 112 VDITINNQKIAKGE 125 ++ I+ + + + Sbjct: 297 LETFIDGKPYFRAK 310 >gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus ATCC 12755] gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus ATCC 12755] Length = 336 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 6/74 (8%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++ E Sbjct: 247 QPVNQDDSRELQKSLNG------VGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKITEP 300 Query: 112 VDITINNQKIAKGE 125 ++ I+ + + + Sbjct: 301 LETFIDGKPYFRAK 314 >gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4] gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4] Length = 122 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +IPV + + + S + + +L+ +G VI LDK GE +D+ +N + + E+ ++ Sbjct: 43 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVIN 102 Query: 131 EDDTHFGVRVIEI 143 + +G+R+IE+ Sbjct: 103 D---KYGLRLIEV 112 >gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267] gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267] Length = 277 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 ++ ++ ++++ + N LIM++ + + + +GS M + +++ + G VI L++ + Sbjct: 177 AQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLKDVLTMDIGSVIELNQLAND 236 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 ++I I+++ +A GE+ I+ D +FG+++ +I Sbjct: 237 PLEILISDKVVALGEVVIV---DGNFGIQITQI 266 >gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15] gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000] gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15] gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000] Length = 103 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I Sbjct: 29 VEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQI 80 >gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] Length = 309 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 ++ I +++ + L S M++ + L G +I DK ES+D+ + +IA+GE + + Sbjct: 224 LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGD 283 Query: 132 DDTHFGVRVIEIL 144 FG+RV +L Sbjct: 284 ---KFGMRVTNVL 293 >gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31] gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp. K31] Length = 83 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I Sbjct: 9 VEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60 >gi|89072283|ref|ZP_01158862.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89051815|gb|EAR57267.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 121 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 3/72 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV + + + S + + L+ +G VI LDK GE +D+ +N + E+ ++ E Sbjct: 46 IPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINE--- 102 Query: 135 HFGVRVIEILNA 146 +G+R+I+++ + Sbjct: 103 KYGLRLIDVVES 114 >gi|119385378|ref|YP_916434.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] gi|119375145|gb|ABL70738.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] Length = 85 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 40/68 (58%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 I V++ I LG + ++ L L D++TLD+ + + V+I + ++ IA+GE+ +E D Sbjct: 12 QIQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVSGDETD 71 Query: 134 THFGVRVI 141 VR++ Sbjct: 72 NRLCVRIL 79 >gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] Length = 502 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPVK++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ + Sbjct: 435 IPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKG---ILVRVND 491 Query: 135 HFGVRVIEILN 145 HFG+++ E++ Sbjct: 492 HFGIQMTELVR 502 >gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia acanthamoebae str. Hall's coccus] Length = 462 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I +IP+ + +G M + LV L G+++ L+ + +D+ +N +++A+GE+ + + Sbjct: 393 IDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGELLSIGD 452 Query: 132 DDTHFGVRVIEI 143 GVRV+EI Sbjct: 453 ---ALGVRVLEI 461 >gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis ATCC 21756] gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis ATCC 21756] Length = 83 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I Sbjct: 9 VEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60 >gi|188997537|ref|YP_001931788.1| surface presentation of antigens (SPOA) protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932604|gb|ACD67234.1| surface presentation of antigens (SPOA) protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 87 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LI NI + + I L S L+NL +GD+I L+K + + V+I N+K+ GE+ + Sbjct: 16 LIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFLNEKVGFGELVNVN 75 Query: 131 EDDTHFGVRVIEIL 144 E +GVR+++++ Sbjct: 76 E---KYGVRLVDLI 86 >gi|315126004|ref|YP_004068007.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913] gi|315014518|gb|ADT67856.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913] Length = 110 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 ++P+ + + + S + + L +GDV+ LDK GE++D+ +N AK E+ ++E Sbjct: 35 FFQDVPLLVTLEVASTEITLGELSQAKEGDVLKLDKVAGEALDVKVNGVFFAKAEVVMVE 94 Query: 131 EDDTHFGVRVIE 142 +G++ + Sbjct: 95 ---GQYGLKFAQ 103 >gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] Length = 321 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 4/73 (5%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +S ++ + I +PV++ ++ S M ++ ++ L GD++ + R+ E D+ IN QK+ + Sbjct: 243 QSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPM--RLLERCDVQINQQKLFR 300 Query: 124 GEITIMEEDDTHF 136 G I E+D + F Sbjct: 301 G--AIFEDDGSLF 311 >gi|90577376|ref|ZP_01233187.1| flagellar motor switch protein [Vibrio angustum S14] gi|90440462|gb|EAS65642.1| flagellar motor switch protein [Vibrio angustum S14] Length = 121 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + IPV + + + S + + L+ +G VI LDK GE +D+ +N + Sbjct: 36 SQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHA 95 Query: 125 EITIMEEDDTHFGVRVIEILNA 146 E+ ++ E +G+R+I+++ + Sbjct: 96 EVVVINE---KYGLRLIDVVES 114 >gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC 49179] gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC 49179] Length = 292 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 59/89 (66%), Gaps = 4/89 (4%) Query: 56 SDSNNILEK-STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++S+ LE+ N +++++I + +++ +G M + ++V++ G VI L++ V + ++I Sbjct: 194 TESDGHLEQLEARNINMLLDIKLNVRVRIGQKKMILKDVVSMDIGSVIELNQMVNDPLEI 253 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 ++++ IAKGE+ I+ D +FG+++ +I Sbjct: 254 LVDDKVIAKGEVVIV---DGNFGIQITDI 279 >gi|261341514|ref|ZP_05969372.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316] gi|288316312|gb|EFC55250.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316] Length = 133 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 L IPV + + + S + ++ L+ + VI LDK GE +DI +N K E ++ Sbjct: 54 LFSRIPVTLTLEVASVEVSLAELMTVGHDSVIELDKMAGEPLDIKVNGILFGKAEAVVL- 112 Query: 131 EDDTHFGVRVIEI 143 + +G+R++E Sbjct: 113 --NDKYGLRILEF 123 >gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92] gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein [Campylobacter curvus 525.92] Length = 286 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +LIM++ + +++ +GS M + +++++ G VI L++ + ++I I ++ IA GE+ Sbjct: 203 NINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVIELNQLANDPLEILIGDKVIALGEVV 262 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 263 II---DGNFGIQITQI 275 >gi|110677671|ref|YP_680678.1| flagellar motor switch protein FliN, putative [Roseobacter denitrificans OCh 114] gi|109453787|gb|ABG29992.1| flagellar motor switch protein FliN, putative [Roseobacter denitrificans OCh 114] Length = 97 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 5/77 (6%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P+++ + +G I +LV L + V++LDK V + VD+ I ++ IA+G + E+DD Sbjct: 20 SVPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVEDPVDLYIGDRLIARG--MLEEKDD 77 Query: 134 THFG---VRVIEILNAQ 147 G VR+ E+++ + Sbjct: 78 DQSGQLIVRLTEVIDLK 94 >gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus DSM 12680] gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus DSM 12680] Length = 330 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 8/74 (10%) Query: 58 SNNILEKSTDNFDLIMN------IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 S+++ E+S D+ ++ N +PVK I++GS + + L+ L+ GDVI L++R+ E Sbjct: 236 SSSVKERSKDSALVLKNRIENAMVPVK--ILIGSTVITVRELLELAPGDVIPLERRLDED 293 Query: 112 VDITINNQKIAKGE 125 +++ I + +G+ Sbjct: 294 LEVVIGQKPKFRGK 307 >gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas subvibrioides ATCC 15264] gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas subvibrioides ATCC 15264] Length = 83 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 V++ ++LG + +S L+ + +G VI LD + V I NN +A+G I I E+ Sbjct: 9 VELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARGMIEIRED 63 >gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] Length = 327 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPVK +LG+ + +S+ NL GD+I +DK+V + +++ + N K K E+ Sbjct: 258 IPVKA--VLGTSKISVSDFANLQIGDIIRIDKKVDQELEVFVGNIKKFKALPGYYED--- 312 Query: 135 HFGVRVIEILNAQ 147 + VRV E++ + Sbjct: 313 KYAVRVTEVIRKE 325 >gi|328543417|ref|YP_004303526.1| surface presentation of antigens protein [polymorphum gilvum SL003B-26A1] gi|326413162|gb|ADZ70225.1| Putative surface presentation of antigens protein [Polymorphum gilvum SL003B-26A1] Length = 88 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 FD I V + ++LG+ M + L+ + +G VI LD + V I NN +AKG++ Sbjct: 3 TFD---EISVDISVVLGTTEMPVHQLLRMGRGAVIDLDVAEEDDVKIFANNTLVAKGQVV 59 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ E GV + E+L Sbjct: 60 LLGE---RIGVSITEVL 73 >gi|237800782|ref|ZP_04589243.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023640|gb|EGI03697.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 353 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/92 (21%), Positives = 51/92 (55%), Gaps = 6/92 (6%) Query: 53 PISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 P + D N+++ + + + DL + ++P+ + LGS + ++ L ++ G ++ L Sbjct: 260 PYTYDRNDLMSELSTDADLDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLAH 319 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + VD+ +N +++ +GE+ + + GVR++ Sbjct: 320 DEVDLMVNGRRVGRGELVTIGDG---LGVRLL 348 >gi|86749492|ref|YP_485988.1| hypothetical protein RPB_2372 [Rhodopseudomonas palustris HaA2] gi|86572520|gb|ABD07077.1| Surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris HaA2] Length = 80 Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 N+ V + ++LG+ M I ++ LS+G +I LD + V I NN +A G + + D Sbjct: 6 NVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPVASGVVLV---DR 62 Query: 134 THFGVRVIEILN 145 V V ++L Sbjct: 63 NRIAVEVKQMLT 74 >gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] Length = 278 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N ++I+++ + +++ +G M + +++ + G VI L++ + +DI ++++ IAKGE+ Sbjct: 194 NINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLDILVDDKVIAKGEVV 253 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 254 IV---DGNFGIQITDI 266 >gi|118591116|ref|ZP_01548515.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614] gi|118436192|gb|EAV42834.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614] Length = 88 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 I V + ++LG M + L+ + +G VI LD E V I NN +AKG++ ++ E Sbjct: 7 IKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGE--- 63 Query: 135 HFGVRVIEIL 144 G+ + E+L Sbjct: 64 RIGISITEVL 73 >gi|149177723|ref|ZP_01856323.1| probable flagellar motor switch protein fliN [Planctomyces maris DSM 8797] gi|148843373|gb|EDL57736.1| probable flagellar motor switch protein fliN [Planctomyces maris DSM 8797] Length = 295 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I +PV+ + L S ++++ L+++ G +IT DK + +++ INNQ GE + E Sbjct: 214 ISKLPVQAIVKLASKKIEMNQLLSICPGSLITFDKPCEDPLELYINNQVYCLGEAVKIGE 273 Query: 132 DDTHFGVRV 140 HFG+++ Sbjct: 274 ---HFGLKI 279 >gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] Length = 329 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 5/73 (6%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPVK +LG+ + +++ +NL+ GD+I LD++V E +D+ + N I K DD Sbjct: 260 IPVKA--VLGNSTISVNDFLNLNVGDIIRLDRKVDEELDVYVGN--IHKFTALPGSADD- 314 Query: 135 HFGVRVIEILNAQ 147 ++ VR+ +L + Sbjct: 315 NYAVRITNVLRGE 327 >gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01] Length = 122 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +IPV + + + S + + +L+ +G VI LDK GE +D+ +N + + E+ ++ Sbjct: 43 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVIN 102 Query: 131 EDDTHFGVRVIEI 143 + +G+R+I++ Sbjct: 103 D---KYGLRLIDV 112 >gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684] gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684] Length = 301 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D + +I V++ LG + + ++ G V+ LD++ + VD+ +N + A G T++ Sbjct: 211 DALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDRKADDPVDLYVNGLRFASG--TLV 268 Query: 130 EEDDTHFGVRVIEI 143 DD + +R+ E+ Sbjct: 269 LTDDGEWALRLAEV 282 >gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277] gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277] Length = 277 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N LIM++ + + + +GS M + +++ + G VI L++ + ++I I+++ +A GE+ Sbjct: 194 NIGLIMDVCLPLHVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILISDKVVALGEVV 253 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 254 IV---DGNFGIQITQI 266 >gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT 98-5491] gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491] gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491] Length = 285 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/76 (22%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ +++++ +G M + +++ + G V+ L++ + +++ ++++ IAKGE+ Sbjct: 202 NMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVV 261 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ EI Sbjct: 262 IV---DGNFGIQITEI 274 >gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] Length = 83 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V++ ++LG + + L+ + +G VI LD + V I NN +A+GEI I Sbjct: 9 VEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGEIEI 60 >gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] Length = 518 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/93 (21%), Positives = 51/93 (54%), Gaps = 3/93 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +EPI + +T+ +I +IP+ +++I G+ +++++ + + D++ L + + Sbjct: 427 AEPIQVEKATPQISTTETEAVIDSIPITLEVIFGTAKVKLADFITWCEKDIVILKESYEQ 486 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + + N I G T++ +D HFG+++ E+ Sbjct: 487 PLSLLANGIHIGSG--TLVRVND-HFGIKITEL 516 >gi|254470456|ref|ZP_05083860.1| putative surface presentation of antigens protein [Pseudovibrio sp. JE062] gi|211960767|gb|EEA95963.1| putative surface presentation of antigens protein [Pseudovibrio sp. JE062] Length = 88 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 FD +I V + ++LG M + L+ + +G VI LD + V I NN +A+G++T Sbjct: 3 RFD---DISVDISVVLGKSEMPVHQLLRMGRGAVIELDTHEADDVTILANNTPVAEGQVT 59 Query: 128 IM 129 ++ Sbjct: 60 VV 61 >gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 105 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V++ ++LG + I + + +G VI LD + V I NN IA+GEI I Sbjct: 31 VQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAAEHDEVWILANNHPIARGEIII 84 >gi|134300237|ref|YP_001113733.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum reducens MI-1] gi|134052937|gb|ABO50908.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum reducens MI-1] Length = 128 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I ++ V + LG ++ ++NL G V+ ++K G+++++ IN+ K A+GEI I+ Sbjct: 49 IEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIV-- 106 Query: 132 DDTHFGVRV 140 + F VR+ Sbjct: 107 -NDKFAVRI 114 >gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53] gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisA53] Length = 82 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S FD + V + ++LG+ M + ++ LS+G +I LD + V I NN +A G Sbjct: 2 SVPTFD---KVSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASG 58 Query: 125 EITI 128 + + Sbjct: 59 MVLV 62 >gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC BAA-430] gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC BAA-430] Length = 279 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 17/76 (22%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +++++ +++++ +G M + +++ + G V+ L++ + +++ ++++ IAKGE+ Sbjct: 196 NMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVV 255 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ EI Sbjct: 256 IV---DGNFGIQITEI 268 >gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 229 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 L +PV + IL + + L + +G+VI L+ + E ++I NN +IA+G++ ME Sbjct: 154 LCAQVPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEERIEIRANNVRIARGKLLGME 213 Query: 131 EDDTHFGVRVIEILNAQ 147 + GV + ++ ++ Sbjct: 214 --NGALGVELTQLYQSK 228 >gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009] gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1] gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris DX-1] gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris CGA009] gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris TIE-1] gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris DX-1] Length = 80 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + + D Sbjct: 9 VDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV---DRNRI 65 Query: 137 GVRVIEIL 144 V V ++L Sbjct: 66 AVEVKQML 73 >gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803] gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803] Length = 547 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ Sbjct: 453 VAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + E + I +N+ +A GE+ + D FGV+V + L Sbjct: 513 DIDEPIQIYVNDVLVAYGELVNV---DGFFGVKVTKTL 547 >gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium sp. 4-46] gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium sp. 4-46] Length = 101 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V + ++LG M I L+ + +G VI LD + VDI N+ IA+G+I + Sbjct: 9 VDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVV 60 >gi|163732489|ref|ZP_02139934.1| flagellar motor switch protein FliN, putative [Roseobacter litoralis Och 149] gi|161393849|gb|EDQ18173.1| flagellar motor switch protein FliN, putative [Roseobacter litoralis Och 149] Length = 97 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P+++ + +G I +LV L + V++LDK V + VD+ I ++ IA+G + E D Sbjct: 20 SVPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVDDPVDLYIGDRLIARGMLEEKEGDQ 79 Query: 134 T-HFGVRVIEILN 145 + VR+ E+++ Sbjct: 80 SGQLIVRLTEVID 92 >gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603] gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603] Length = 548 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 457 VVQPIEYKEVKQVEPVYMDASILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDID 516 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 517 EPIQIYVNDVLVAYGELVNV---DGFFGVKV 544 >gi|114764046|ref|ZP_01443285.1| flagellar motor switch protein FliN [Pelagibaca bermudensis HTCC2601] gi|114543404|gb|EAU46419.1| flagellar motor switch protein FliN [Roseovarius sp. HTCC2601] Length = 95 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133 +P+++ + +G + +L+ L G V+TLDKR+ + V++ + ++ I G + +++ ++ Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGAGSVLTLDKRLEDPVELYVGDRLIGIGALEVVDGGEN 78 Query: 134 THFGVRVIEILN 145 VR+ E+++ Sbjct: 79 GQLAVRLTEVVD 90 >gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio harveyi ATCC BAA-1116] gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116] Length = 122 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +IPV + + + S + + +L+ +G VI LDK GE +D+ +N + + E+ ++ Sbjct: 43 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVIN 102 Query: 131 EDDTHFGVRVIEI 143 + +G+R+I + Sbjct: 103 D---KYGLRLINV 112 >gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18] gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] Length = 80 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + + Sbjct: 9 VDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV 60 >gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC 51449] gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449] Length = 278 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N ++I+++ + +++ +G M + +++ + G VI L++ + ++I ++++ IAKGE+ Sbjct: 194 NINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEILVDDKVIAKGEVV 253 Query: 128 IMEEDDTHFGVRVIEI 143 I+ D +FG+++ +I Sbjct: 254 IV---DGNFGIQITDI 266 >gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus B316] gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus B316] Length = 327 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 +++PVK ILG C + +S+ V+L GD+I LD RV + + + N Sbjct: 256 VDVPVKA--ILGKCNVSVSDFVHLQAGDIIRLDNRVNTDMQVYVGN 299 >gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT] gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT] Length = 331 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 62 LEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 LE S + MN+ + M ++LGS + I + LS GDVITLD V + + N+ Sbjct: 243 LEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDVITLDSLTSSPVKVVVGNEP 302 Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145 G + ++ GV++++I++ Sbjct: 303 YLLGRPGTIGKNR---GVQILDIID 324 >gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10] gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris MCS10] Length = 99 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 I ++ V++ ++LG M I + + +G VI LD + V I NN IA+G++ I Sbjct: 21 ISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVVI 77 >gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88] gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88] Length = 332 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +LG + + + LS GDV+ LD ++ + + I + NQ A G+ ++ D + G++++ Sbjct: 265 VLGGAKITVEEFLRLSLGDVLILDNQIDKPISINVENQLYAYGKPGVV---DKNMGIQIL 321 Query: 142 EILN 145 +IL+ Sbjct: 322 DILD 325 >gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621] gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis KBAB4] gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621] Length = 548 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 457 VVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDID 516 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 517 EPIQIYVNDVLVAYGELVNV---DGFFGVKV 544 >gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1] Length = 545 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 ++PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 455 AQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDE 514 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 515 PIRIYVNDVLVAYGELVNV---DGFFGVKV 541 >gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5] gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB5] Length = 80 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 + V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + + D Sbjct: 6 KVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLV---DR 62 Query: 134 THFGVRVIEILN 145 V V ++L Sbjct: 63 NRIAVEVKQMLT 74 >gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3] gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3] Length = 122 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +IPV + + + S + + +L+ +G VI LDK GE +D+ +N + + E+ ++ Sbjct: 43 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVI- 101 Query: 131 EDDTHFGVRVIEI 143 + +G+R+I + Sbjct: 102 --NDKYGLRLINV 112 >gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum DSM 12653] gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum DSM 12653] Length = 330 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 IP+ +Q LGS + + +L+ GDVI LDKR E V++ I+ + KG Sbjct: 258 IPLTVQ--LGSTTVTVGDLLKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG 305 >gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 80 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 15/70 (21%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++ + + + +G + ++ ++ L +GD+I DK++ + +D+ +N QK GE+ I+ + Sbjct: 13 DVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKFGIGELVIVND-- 70 Query: 134 THFGVRVIEI 143 + +R++++ Sbjct: 71 -KYSLRLVDL 79 >gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter proteolyticus DSM 5265] gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter proteolyticus DSM 5265] Length = 326 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 +S+P D L ++I +I V++ +LG + I ++ + GDVI L +R Sbjct: 231 GVSKPTPDDWKTTL------MEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSRRS 284 Query: 109 GESVDITINNQKIAKG 124 E VD+ + AKG Sbjct: 285 DEEVDLLVEGNLFAKG 300 >gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252] gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252] Length = 348 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 I V+++ ++G +++S ++ L GDVI L++RV + V + I ++ + I Sbjct: 263 KIEVELRAVMGRTRIKLSEMMTLEVGDVIVLERRVNQPVQVYIGEREKFRA---IPGRSG 319 Query: 134 THFGVRVIEIL 144 H +R++E++ Sbjct: 320 KHRALRILEVV 330 >gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] Length = 330 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 IP+ +Q LGS + + +L+ GDVI LDKR E V++ I+ + KG Sbjct: 258 IPLTVQ--LGSTTVTVGDLLKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG 305 >gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] Length = 323 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D ++EK ++ +PV++ +G + + + + L GDVITL+K VGE +++ + Sbjct: 245 DYRTVVEK------ILAEVPVELIAYIGRTRLPVRDFIQLQVGDVITLEKTVGEDLELYV 298 Query: 117 NNQ 119 + Sbjct: 299 DGH 301 >gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 318 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 227 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 286 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 287 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 314 >gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum BKT015925] gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum BKT015925] Length = 331 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 62 LEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 LE+S + MN+ + M+ +LGS + + + LS GDV+TLD V + + NQ Sbjct: 243 LEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDVVTLDALTSSPVKMMVGNQP 302 Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145 + M ++ GV++++I++ Sbjct: 303 YLLAKPGTMGKNR---GVQILDIID 324 >gi|315281354|ref|ZP_07869994.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|313614993|gb|EFR88497.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|328475657|gb|EGF46406.1| flagellar motor switch domain protein [Listeria monocytogenes 220] Length = 54 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M+E+ FG+ + EI Sbjct: 1 MPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDEN---FGIVISEI 53 >gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM 14863] gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 227 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 ++++I + + + LG + + ++++ G VITLD+ E +++ +N E+ + Sbjct: 149 VLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIG 208 Query: 131 EDDTHFGVRVIE 142 E +G+R++E Sbjct: 209 E---KYGIRIVE 217 >gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus YK9] gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus YK9] Length = 333 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 +P+ ++ LG + + +NL +GDVITL+K VGE ++I + N+ Sbjct: 258 QLPIAVE--LGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNK 301 >gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4] gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579] gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4] Length = 546 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273] gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272] gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272] gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273] Length = 548 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 459 QPIEYQEVKQVEPVYMDASILKNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEP 518 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 519 IQIYVNDVLVAYGELVNV---DGFFGVKV 544 >gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] Length = 308 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + P+ ++ +LG M++ + L GDVI LD RVG + + + N+ Sbjct: 238 VQEAPLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNK 285 >gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 4222] gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 4222] Length = 544 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 453 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 512 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 513 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 540 >gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3] gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3] Length = 547 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 456 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543 >gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC 2396] gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC 2396] Length = 318 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P++SD+ + E DL N+ +K++ LGS + ++ L +++G L + V Sbjct: 221 PMTSDTQHTPEPLDAPSDL-GNLELKLEFHLGSLNLTLAELSQMTEGAAFDLGLSLEAPV 279 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +N Q +A+ E+ E D G RV+ + Sbjct: 280 AMKVNGQTLARCELV---EIDGRLGARVVRL 307 >gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407] gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407] gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 545 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541 >gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2] gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2] gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 546 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200] gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200] Length = 545 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541 >gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24] gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24] Length = 546 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 544 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 453 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 512 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 513 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 540 >gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342] gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342] Length = 547 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 456 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543 >gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676] gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185] gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W] gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876] gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876] gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W] gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185] gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676] Length = 545 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541 >gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar sotto str. T04001] gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar sotto str. T04001] Length = 545 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541 >gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842] gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842] Length = 545 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 514 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 541 >gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264] gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264] gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] Length = 546 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 546 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15] gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15] Length = 546 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550] gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550] Length = 546 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 515 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820] gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201] gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820] gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201] gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 546 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411] gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411] Length = 329 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 35/54 (64%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 ++ N +LIM+I + ++I +G M I ++++L G +I LDK + E +DI +N Sbjct: 241 EAPKNLNLIMDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVN 294 >gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia 94] Length = 546 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L] gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation [Bacillus anthracis str. A2012] gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis Tsiankovskii-I] gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W] gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str. CDC 684] gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str. A0248] gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066] gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055] gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western North America USA6153] gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B] gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum] gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str. Sterne] gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L] gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis Tsiankovskii-I] gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W] gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str. CDC 684] gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str. A0248] Length = 546 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas stutzeri DSM 4166] Length = 279 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 5/78 (6%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D I ++PV++ ++ + M ++ ++ L D++ L R + ++ IN QK+ +G TI Sbjct: 207 DHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML--RPLDRYEVRINQQKLFRG--TIF 262 Query: 130 EEDDTHFGVRVIEILNAQ 147 EED F + +E +N Q Sbjct: 263 EEDGALF-LTSLESVNPQ 279 >gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 547 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 518 IRIYVNDVLVAYGELVNV---DGFFGVKV 543 >gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42] gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42] Length = 546 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 546 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108] gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108] Length = 547 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 518 IRIYVNDVLVAYGELVNV---DGFFGVKV 543 >gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus NVH0597-99] gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI] gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus NVH0597-99] gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 546 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102] gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1] gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam] gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102] gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1] Length = 547 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 518 IRIYVNDVLVAYGELVNV---DGFFGVKV 543 >gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29] gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3] gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3] gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29] Length = 547 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 456 VVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543 >gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5] gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5] Length = 80 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 N+ V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + + Sbjct: 6 NVSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60 >gi|126730034|ref|ZP_01745846.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37] gi|126709414|gb|EBA08468.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37] Length = 95 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED- 132 ++P+++ + +G + L+ L++G V+ LDK++ + V++ + + I G + ++E D Sbjct: 18 SVPIEITVSVGKARPLVRELLQLNEGSVLALDKQLDDPVELYVGEKLIGIGVLEVVEGDG 77 Query: 133 DTHFGVRVIEILNAQ 147 VR+ E+++ Q Sbjct: 78 QGQLAVRLTEVVDLQ 92 >gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis Ellin345] gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis Ellin345] Length = 252 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 3/61 (4%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 G M + +++ L G V+ LD+ + + V++ ++ + IA+G + ++ D ++G+RV E Sbjct: 189 FGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVV---DGNYGLRVAE 245 Query: 143 I 143 + Sbjct: 246 V 246 >gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827] gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827] Length = 320 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + N+PV + + S ++ S+LV+L GDVI L R+ E +DI + A Sbjct: 244 LQNVPVAVSVKFQSVRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFA 294 >gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae] Length = 325 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 6/91 (6%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + S+++N+ +S N + I IP++ ++ G +++ L +LS+G +I L V V Sbjct: 212 MYSETDNLANQSLTNLEEI-QIPIRFEV--GRQYIELQALTHLSEGSLIDLAVPVNGDVR 268 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 I N Q + G++ E G++V+E+ Sbjct: 269 IIANQQPLGTGQLV---EIQGRLGIKVVELF 296 >gi|82470759|gb|ABB77411.1| HrcQ [Pantoea stewartii subsp. stewartii] Length = 336 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 S D+F L M +P+ +++ G + + L +L G V+TLD D+ IA+ Sbjct: 254 ASDDHFSLAM-LPLSLEVRCGRTRLTLGELQHLQPGSVLTLDNMTPGEADLYYGETLIAQ 312 Query: 124 GEITIME 130 GE+ +E Sbjct: 313 GELVDVE 319 >gi|225850265|ref|YP_002730499.1| flagellar motor switch phosphatase FliY [Persephonella marina EX-H1] gi|225646313|gb|ACO04499.1| flagellar motor switch phosphatase FliY [Persephonella marina EX-H1] Length = 79 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 + ++ VK+ +G ++ L +GD+I LDK + + V++ + +Q A GE+ + Sbjct: 9 FLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELIVAN 68 Query: 131 EDDTHFGVRVIEI 143 E +G+RV+++ Sbjct: 69 EK---YGIRVVDL 78 >gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28] gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28] Length = 547 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 456 VVQPIEFKEVKQIEPVYIDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 515 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV+V Sbjct: 516 EPIRIYVNDVLVAYGELVNV---DGFFGVKV 543 >gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2] gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2] Length = 80 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 N+ V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + + Sbjct: 6 NVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60 >gi|116514990|ref|YP_802619.1| hypothetical protein BCc_047 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256844|gb|ABJ90526.1| flagellar motor switch protein, C-ring protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 134 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV + I L + I L+ KG ++ L+ + + ++I INN IA GE+ + ++ Sbjct: 63 IPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELVV---NND 119 Query: 135 HFGVRVIEIL 144 +GV++ ++L Sbjct: 120 CYGVQITKLL 129 >gi|237755392|ref|ZP_04584019.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium yellowstonense SS-5] gi|237692433|gb|EEP61414.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium yellowstonense SS-5] Length = 87 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 +NIP+ ++ L S L+NL +GD+I L+K + + V+I +N+K GE+ + Sbjct: 20 INIPIVIE--LASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFSNEKAGFGELVNV--- 74 Query: 133 DTHFGVRVIEIL 144 + +G R+++++ Sbjct: 75 NGKYGARLVDLI 86 >gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] Length = 327 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 29/42 (69%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 V ++ LG+ M++ + ++L +GD++TLDK+V + + + IN Sbjct: 262 VYLEFRLGTAAMKVEDFLSLKEGDLLTLDKKVDDELPVFING 303 >gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271] gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271] Length = 548 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 459 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 518 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 519 IRIYVNDVLVAYGELVNV---DGFFGVKV 544 >gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293] gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293] Length = 546 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio sp. Ex25] gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio sp. Ex25] gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] Length = 123 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%) Query: 63 EKSTDNFDL--IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 E +T DL +IPV + + + S + + +L+ +G VI L+K GE +D+ +N Sbjct: 34 EPATAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSL 93 Query: 121 IAKGEITIMEEDDTHFGVRVIEI 143 + E+ ++ + +G+R+I++ Sbjct: 94 MGHAEVVVV---NDKYGLRLIDV 113 >gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329] Length = 123 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +IPV + + + S + + +L+ +G VI L+K GE +D+ +N + E+ ++ Sbjct: 44 FFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLLGHAEVVVVN 103 Query: 131 EDDTHFGVRVIEI 143 + +G+R+I++ Sbjct: 104 D---KYGLRLIDV 113 >gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241] gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241] Length = 546 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97] gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97] Length = 546 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] Length = 546 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187] gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26] gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187] gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26] Length = 546 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 546 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1] gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1] Length = 546 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRV 140 + I +N+ +A GE+ + D FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNV---DGFFGVKV 542 >gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 80 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M + ++ LS+G +I LD + V I +NN IA G + + Sbjct: 7 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMV 60 >gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 123 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%) Query: 63 EKSTDNFDL--IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 E +T DL +IPV + + + S + + +L+ +G VI L+K GE +D+ +N Sbjct: 34 EPATAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSL 93 Query: 121 IAKGEITIMEEDDTHFGVRVIEI 143 + E+ ++ + +G+R+I++ Sbjct: 94 MGHAEVVVV---NDKYGLRLIDV 113 >gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196] gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196] Length = 548 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 457 VVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDID 516 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + D FGV++ Sbjct: 517 EPIQIYVNDVLVAYGELVNV---DGFFGVKM 544 >gi|85058546|ref|YP_454248.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] gi|84779066|dbj|BAE73843.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] Length = 304 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 VDN+ P + ++ + + FD +PV ++ +L + ++ L NL G V L + Sbjct: 204 VDNVIAPSNEETQP--QHTLPLFDW-SRVPVTVEFVLEANSYPLAELDNLQPGTVFDLSE 260 Query: 107 RVGESVDITINNQKIAKGEITIMEED 132 V +++ I +N Q + GE+ +E++ Sbjct: 261 NVEKNIKIFLNQQLVGHGELVTLEDE 286 >gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] Length = 327 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 5/78 (6%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN-QKIAKGEITIM 129 LI + M+ +LG + + + VNL GD+I LD++V + +++ + N +K A + Sbjct: 252 LIDRAQIPMKAVLGHSRISVGDFVNLQLGDIIRLDRKVDDELEVYVGNIKKFAA--LPGY 309 Query: 130 EEDDTHFGVRVIEILNAQ 147 ED + +R+ E++ + Sbjct: 310 SED--KYAIRITEVIKEE 325 >gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans ISDg] gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans ISDg] Length = 325 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 IPVK +LG + ++ L+N+ KGD+I LD+++ + + + + N K Sbjct: 258 IPVKA--VLGKSSISLNELINMQKGDIIKLDRKIDDELSVYVGNIK 301 >gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 325 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +++IP+KM L + +S L+ L +GDV + ++G+ V++ ++ + GE+ Sbjct: 256 VLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPI--QIGDGVEVLMDEHRFYYGEM 308 >gi|289433976|ref|YP_003463848.1| flagellar motor switch protein fliN, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315301943|ref|ZP_07872944.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|289170220|emb|CBH26760.1| flagellar motor switch protein fliN, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313629685|gb|EFR97817.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|313639060|gb|EFS04047.1| conserved domain protein [Listeria seeligeri FSL S4-171] Length = 78 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 NIP+++ LG I++L+++ KG V L+ V V ITI+ + I GE I+ +D Sbjct: 6 NIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGE--ILTKDG 63 Query: 134 THF 136 F Sbjct: 64 KMF 66 >gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] Length = 323 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 32/52 (61%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + ++N+ V +Q+ LG + + +L+NL GD + LD +V + +D+ I ++ Sbjct: 249 YQHVLNVMVNLQVCLGHMHIPLRDLINLRVGDTLLLDTKVDKPLDVKIEKKQ 300 >gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium xylanolyticum LX-11] gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium xylanolyticum LX-11] Length = 329 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 34/50 (68%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 D I N V +++++G+ + + +L++ KGDVI ++KR + +++ IN++ Sbjct: 250 DKISNTYVPLKVVIGTSKITVRDLLSFDKGDVIEINKRYKDPIEVKINDE 299 >gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814] gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica ATCC 49814] Length = 80 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + +++ ++LG + + L+ + +G VI LD + V I NN IA+GE+ I Sbjct: 4 VEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVI 57 >gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum ferrodiazotrophum] Length = 341 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 30/132 (22%) Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS-----SDSNNIL 62 +SYI+ + NP Q + + SPT L + D+D P+ S I Sbjct: 180 VSYIRSEI--------NP-QFSAIVSPTEMVIALTYRLDIDGQGRPVYICIPYSTIEPIK 230 Query: 63 EK-----STDNFDL-----------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 EK +D +++ I ++P+K+ LG+ ++S ++ GD+ITLD+ Sbjct: 231 EKLYTGFQSDQYEVDHRWILRLRQQIDSVPIKIVAELGTTKARLSEVLAWKPGDMITLDQ 290 Query: 107 RVGESVDITINN 118 V + + IT+ Sbjct: 291 YVDDPIKITVEK 302 >gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110] gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110] Length = 80 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + + Sbjct: 9 VDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLV 60 >gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus JW 200] gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus JW 200] Length = 332 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+ Q LGS + + + L GD+I LDK E VDI I+ + +G I + Sbjct: 260 IPLTAQ--LGSTTITVKEFLELEIGDIIMLDKHFKEPVDIIIDKKVKFRGIPGI---KNN 314 Query: 135 HFGVRVIEIL 144 + VR+ E++ Sbjct: 315 KYSVRITEVI 324 >gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str. 1873] gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str. 1873] Length = 331 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%) Query: 62 LEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 LE+S + MNI + M +LGS + + + LS GDV+TLD V + + ++ Sbjct: 243 LEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDVVTLDNLTSSPVKMMVGDKP 302 Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145 G+ I+ ++ GV++++I++ Sbjct: 303 YLLGKPGIIGKNR---GVQILDIID 324 >gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 344 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+ Sbjct: 257 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 316 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141 +N ++I +GE+ + + GVR++ Sbjct: 317 VNGRRIGRGELVSIGDG---LGVRLL 339 >gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 328 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 IP+K +++G + + +L+ LS GDVI L++ + + +DI I N+ Sbjct: 258 TIPIK--VVMGKTVITVRDLLALSVGDVIPLNRNISQELDIVIGNR 301 >gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis audaxviator MP104C] gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis audaxviator MP104C] Length = 332 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 34/58 (58%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 I PV++ ++G + + +L+ L GDV+ L +RV + +D+ +++Q K + ++ Sbjct: 255 IERAPVELSAVVGESEITVQDLLQLQVGDVVPLSRRVTQDLDLYVSDQLKFKAQAGVL 312 >gi|258622511|ref|ZP_05717533.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|258624666|ref|ZP_05719601.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|262173377|ref|ZP_06041054.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] gi|258583058|gb|EEW07872.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|258585211|gb|EEW09938.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|261890735|gb|EEY36722.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] Length = 123 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 IPV + + + S + + L+ +G VI LDK GE +D+ +N + EI I+ Sbjct: 43 FFKGIPVVVTLEVASKEITLGELMKAGEGTVIELDKLNGEPLDVKVNGSLMGHAEIVIVN 102 Query: 131 EDDTHFGVRVIEILNA 146 + +G+ + ++L++ Sbjct: 103 D---KYGLHLTDVLSS 115 >gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT 1] gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT 1] Length = 325 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V++ +LGS +Q+ + + +GDVI LD+RV + + + + + K + + + Sbjct: 256 VELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKPMFKIQAGVSK------ 309 Query: 137 GVRVIEILNAQ 147 G R ++ L+A+ Sbjct: 310 GRRAVQFLHAE 320 >gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 301 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+ Sbjct: 214 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 273 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141 +N ++I +GE+ + + GVR++ Sbjct: 274 VNGRRIGRGELVSIGDG---LGVRLL 296 >gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 301 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+ Sbjct: 214 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 273 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141 +N ++I +GE+ + + GVR++ Sbjct: 274 VNGRRIGRGELVSIGDG---LGVRLL 296 >gi|89069802|ref|ZP_01157137.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516] gi|89044603|gb|EAR50719.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516] Length = 96 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/55 (25%), Positives = 34/55 (61%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + +P+++ I++G + L+ L + V+ LD+ V + V++ + ++ IA+GE+ Sbjct: 17 LRAVPIEITIVVGRARPSVGELLTLDQNAVLPLDRGVDDPVELYVGDRLIARGEL 71 >gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 351 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+ Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141 +N ++I +GE+ + + GVR++ Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346 >gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7] gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7] Length = 333 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 63 EKSTDNFDL------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 EK TD+ D + + PV M+++LG M + N + L GD+I LD + + + +++ Sbjct: 243 EKETDHTDSGKLEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSV 302 >gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pakistani str. T13001] Length = 546 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 514 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + + FGV+V Sbjct: 515 EPIRIYVNDVLVAYGELVNV---NGFFGVKV 542 >gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 351 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+ Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141 +N ++I +GE+ + + GVR++ Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346 >gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134] gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134] Length = 545 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 VVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDID 513 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 E + I +N+ +A GE+ + + FGV+V Sbjct: 514 EPIRIYVNDVLVAYGELVNV---NGFFGVKV 541 >gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 351 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+ Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141 +N ++I +GE+ + + GVR++ Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346 >gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 351 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 59 NNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 N+ + + TD DL + +P+ + LGS + ++ L ++ G ++ L + VD+ Sbjct: 264 NDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLM 323 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141 +N ++I +GE+ + + GVR++ Sbjct: 324 VNGRRIGRGELVSIGDG---LGVRLL 346 >gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4] gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4] Length = 331 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 63 EKSTDNFDL------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 EK TD+ D + + PV M+++LG M + N + L GD+I LD + + + +++ Sbjct: 242 EKETDHTDSGKIEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLILSV 301 >gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus DSM 8271] gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus DSM 8271] Length = 332 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 I + V +++ LG + + L+ L KGDVI L + + E +DI + K G Sbjct: 253 IERVRVPLKVFLGQTQITVRELLGLEKGDVIPLQQHIQEPLDIYVGKFKKFAG 305 >gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14] gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter hamburgensis X14] Length = 87 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + + Sbjct: 14 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVVV 67 >gi|50121008|ref|YP_050175.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560423|gb|AAS20383.1| HrcQ [Pectobacterium atrosepticum] gi|49611534|emb|CAG74982.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 405 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 7/101 (6%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 VS P +++++ + D + + DS+N+ E + +P+ + I GS M Sbjct: 279 TVSMPATATDIMLADPNSDTSAFEFTLDSDNVTES-------LPPLPITLHIRCGSLTMT 331 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 ++ L +L+ G V+TL V + + +A G++ +E Sbjct: 332 LAELQHLASGSVLTLRDVVPGQAWLYHGDIALASGDLVDVE 372 >gi|238759390|ref|ZP_04620555.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236] gi|238702417|gb|EEP94969.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236] Length = 311 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 2/99 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++++ + E + + + E +FD + + VK+ +LG + + L ++ G V +L Sbjct: 207 DNIEEVEETVPTLDEVLPENLPSHFD-VTKLTVKLTFVLGHSEIPLEELAHIQPGAVYSL 265 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V + N Q +A+GE+ + DD G+ V + Sbjct: 266 GADKDREVKVYANKQLVAEGELVYI-GDDEELGLEVTRL 303 >gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC 49176] gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC 49176] Length = 326 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 IP++ +LG + +++ VNL GDV+ L+ +V + +D+ + N K K Sbjct: 258 IPIRA--VLGKSVVSVNDFVNLQPGDVVRLNAKVDDELDVFVGNMKKFKA 305 >gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC 27405] gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 2360] gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20] gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC 27405] gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 2360] gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20] gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 1313] Length = 328 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 V ++ ILG +Q+++ + L GDVITLD V ++D+ + + Sbjct: 259 VPVRAILGRATIQVADFLELQPGDVITLDSNVNGNLDVLVGD 300 >gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514] gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus CCSD1] gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561] gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513] gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514] gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus CCSD1] gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561] gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513] gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 332 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+ Q LGS + + ++ GD+I LDK E VDI I+ + +G I + Sbjct: 260 IPLTAQ--LGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIIDKKVKFRGIPGI---KNN 314 Query: 135 HFGVRVIEIL 144 + VR+ E++ Sbjct: 315 KYSVRITEVI 324 >gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] Length = 331 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 N+ +++ +G + + ++L GDVI LDK + VD+ + ++ KG IM + + Sbjct: 256 NVNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEVDVYVYDKLKYKG---IMGKRN 312 Query: 134 THFGVRV 140 F VR+ Sbjct: 313 GRFAVRI 319 >gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] Length = 329 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 32/57 (56%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +MN V++ +LG + +L++L GD + LD+ E + + + K+ KG++ + Sbjct: 255 LMNSTVEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEPLSVMVGENKVFKGQVGV 311 >gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum Ice1] gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum Ice1] Length = 331 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 58 SNNILEKSTDNFDLIMN----IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 SN E++T+ + + N V + ++LG + +S L++L GDVI LD R ++ Sbjct: 235 SNAAKERTTEQLEALRNRLERALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSELE 294 Query: 114 ITINNQ 119 + I + Sbjct: 295 VLIGQR 300 >gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484] gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484] Length = 315 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 6/75 (8%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 K + I+E S + +N L ++ + IP+ +++ILG +Q+ +L+N+ GD + Sbjct: 224 KEVLKGITELRSPEVSNKLLQALEE------IPLNLEVILGRQKIQLGDLLNMKVGDTMI 277 Query: 104 LDKRVGESVDITINN 118 L K + E V++ ++ Sbjct: 278 LQKGLREPVEVRVSG 292 >gi|313634375|gb|EFS00970.1| conserved domain protein [Listeria seeligeri FSL N1-067] Length = 78 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IP+++ LG I++L+++ KG V L+ V V ITI+ + I GE I+ +D Sbjct: 6 SIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGE--ILTKDG 63 Query: 134 THF 136 F Sbjct: 64 KMF 66 >gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] Length = 331 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V++ ILG+ + + +NL+ GDV+TL ++ V + + ++ G+ ++ D + Sbjct: 259 VELTAILGTVDVTVQEFLNLNVGDVLTLKEKTTSPVKLMVEDKVYYYGKPGVI---DKNM 315 Query: 137 GVRVIEILN 145 GV +++IL+ Sbjct: 316 GVEILDILD 324 >gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC 14580] gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC 14580] gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2] gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580] gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2] Length = 332 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 KS + L IP+ + LGS + I +NL GD ITLDK V E + + + ++ Sbjct: 249 KSIEKRILTAQIPIVAE--LGSSELTIEEFLNLEIGDCITLDKSVAEPLTVLVGDK 302 >gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1 BON] gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1 BON] Length = 335 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 13/70 (18%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S N L K +N + IP++ ILG + I + + LS GD+I LD ESVD N Sbjct: 250 SFNTLRKRIEN----VQIPIRA--ILGESTISIGDFMQLSPGDIIQLD----ESVD---N 296 Query: 118 NQKIAKGEIT 127 + K+ G+IT Sbjct: 297 HIKVMVGDIT 306 >gi|16799781|ref|NP_470049.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|16413158|emb|CAC95938.1| lin0706 [Listeria innocua Clip11262] Length = 78 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 IP+++ LG + +L+++ KG V L+ G V ITI+ + I GEI Sbjct: 6 TIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTGNVVKITISGKCIGYGEI 58 >gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium azorense Az-Fu1] gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium azorense Az-Fu1] Length = 83 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/80 (22%), Positives = 48/80 (60%), Gaps = 3/80 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++ L+ ++ V++++ L + L+N+ +GD+I L+K + + + + + N A G Sbjct: 3 TIEDLKLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIG 62 Query: 125 EITIMEEDDTHFGVRVIEIL 144 E+T + E +G+R+++++ Sbjct: 63 EMTNINE---KYGIRIVDLI 79 >gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255] gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter winogradskyi Nb-255] Length = 97 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + + Sbjct: 24 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVMV 77 >gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168] gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168] Length = 334 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ +G + +++L+ L GDVI LDK+ E VDI I +G + + H Sbjct: 258 PLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVDIRIGKNVKFQGVAGV---SNKH 314 Query: 136 FGVRVIEILN 145 V++ ++++ Sbjct: 315 MAVKITDVIS 324 >gi|255018475|ref|ZP_05290601.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-515] Length = 64 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 16/67 (23%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 ++++ G+ +++ ++ + DVI L + + E + + +N I KG I+ D HFG+ Sbjct: 1 LEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG---ILVRVDDHFGI 57 Query: 139 RVIEILN 145 ++ E++ Sbjct: 58 QMTELVR 64 >gi|116626496|ref|YP_828652.1| surface presentation of antigens (SPOA) protein [Candidatus Solibacter usitatus Ellin6076] gi|116229658|gb|ABJ88367.1| surface presentation of antigens (SPOA) protein [Candidatus Solibacter usitatus Ellin6076] Length = 82 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++PV +++ L M +++ L +G VI + GE++DI I GEI ++E Sbjct: 12 DVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSGEIVVIE--- 68 Query: 134 THFGVRV 140 GVR+ Sbjct: 69 NTLGVRI 75 >gi|116872087|ref|YP_848868.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|315281359|ref|ZP_07869999.1| conserved domain protein [Listeria marthii FSL S4-120] gi|116740965|emb|CAK20085.1| flagellar motor switch protein, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|313614998|gb|EFR88502.1| conserved domain protein [Listeria marthii FSL S4-120] Length = 78 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 NIP+++ LG + +L+++ KG V L+ V ITI+ + I GEI Sbjct: 6 NIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEI 58 >gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855] gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8] gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855] gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8] Length = 372 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSK 98 ML Q + + ISS + + + D ++ + V + LG + ++ L L + Sbjct: 228 MLEQMLGRSGMEQWISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQE 287 Query: 99 GDVITLDKRVGESVDITINNQK 120 GDVI LD+ + + + +N ++ Sbjct: 288 GDVIPLDRETDDPIKVFVNGEQ 309 >gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM 2228] Length = 335 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 27/44 (61%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 V++ +LGS + + + + L GDV+ LDK+V E+ ++ I + Sbjct: 259 VEVDAVLGSTEITVEDFLYLQPGDVVRLDKKVEENAELKIGRSR 302 >gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] Length = 331 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 11/40 (27%), Positives = 28/40 (70%) Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 ++ILG+ + + + +NL+ GDV+TL+++ + +++ I + Sbjct: 262 EVILGNASVTVEDFLNLTVGDVVTLERKFEDPLEVVIEER 301 >gi|269302491|gb|ACZ32591.1| type III secretion apparatus protein, YscQ/HrcQ family [Chlamydophila pneumoniae LPCoLN] Length = 371 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +S + L+ G +++L VDI ++ K+ +GEI + + G+RV+E+ Sbjct: 319 LAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LGIRVLEV 371 >gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4] gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4] Length = 327 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 G + + ++L GDV+ LD+R GE +D+ + K + + ++ H V++ Sbjct: 265 GETRLSVQEFLDLEVGDVLVLDRRFGEDLDVYVGKIKRYRAQPGLL---GRHLAVQI 318 >gi|15618614|ref|NP_224900.1| type III secretion system protein [Chlamydophila pneumoniae CWL029] gi|15836236|ref|NP_300760.1| type III secretion system protein [Chlamydophila pneumoniae J138] gi|16752336|ref|NP_444594.1| type III secretion system protein [Chlamydophila pneumoniae AR39] gi|33242062|ref|NP_877003.1| type III secretion system protein [Chlamydophila pneumoniae TW-183] gi|4377007|gb|AAD18843.1| Flagellar Motor Switch Domain/YscQ family [Chlamydophila pneumoniae CWL029] gi|6672034|dbj|BAA88654.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae] gi|8163350|gb|AAF73618.1| type III secretion translocase SctQ [Chlamydophila pneumoniae AR39] gi|8979076|dbj|BAA98911.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae J138] gi|33236572|gb|AAP98660.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183] Length = 371 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +S + L+ G +++L VDI ++ K+ +GEI + + G+RV+E+ Sbjct: 319 LAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LGIRVLEV 371 >gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] Length = 367 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 LI V + ILG + ++ +NL +GD++ LD+ + +TI+ +++ E+ + Sbjct: 253 LIGRAEVLYEAILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGL 310 >gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5] gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5] Length = 329 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 31/52 (59%) Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +Q +LG M + +++L GD++TL +V + + + + + K GEI I++ Sbjct: 262 LQAVLGESTMTLREILDLEIGDILTLSTKVRDPMVLQVGDMKKYYGEIGIID 313 >gi|312971677|ref|ZP_07785852.1| hypothetical protein EC182770_2188 [Escherichia coli 1827-70] gi|310336274|gb|EFQ01474.1| hypothetical protein EC182770_2188 [Escherichia coli 1827-70] Length = 493 Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNI---SEPISSDSNNILEKSTDNFDLIMNIPVKM 79 D+P +D +S Q +D +++ S PI D NN ++ + + + + M Sbjct: 274 DSPNEDNLISYVKEGLSNFSQTDDSNDLLAFSLPIKIDDNNWIDLTVAKVNTEIELTPDM 333 Query: 80 QIILGSCCMQISNLVN 95 QII S C+ I NL++ Sbjct: 334 QIIERSGCLSIGNLLD 349 >gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277] gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277] Length = 368 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 LI V + ILG + ++ +NL +GD++ LD+ + +TI+ +++ E+ + Sbjct: 254 LIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGL 311 >gi|222082188|ref|YP_002541553.1| type III secretion apparatus protein, YscQ/HrcQ family [Agrobacterium radiobacter K84] gi|221726867|gb|ACM29956.1| type III secretion apparatus protein, YscQ/HrcQ family [Agrobacterium radiobacter K84] Length = 336 Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 I +IPVK+ + + +S L ++++G V LD+ ++V+I + I +GEI ++ Sbjct: 266 IGDIPVKLVFDIARIELPLSELESIAEGHVFPLDRPKQDAVEIVTQGRIIGRGEIVTLD 324 Searching..................................................done Results from round 2 >gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040365|gb|ACT57161.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62] Length = 147 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 147/147 (100%), Positives = 147/147 (100%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN Sbjct: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60 Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK Sbjct: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 IAKGEITIMEEDDTHFGVRVIEILNAQ Sbjct: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 >gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP] Length = 366 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 12/156 (7%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQD-TNVSSPTNNSEMLIQKNDVDNISE-PISSDS 58 +KK+ ++ + +E + P D T+ S PT+ ++ + ++ P+ + Sbjct: 207 FVKKLYELIFGTPTVEQKQASAPAPGTDQTSASKPTSFVPPTPKREEKQAVAARPVQFED 266 Query: 59 NNILEKSTDN-------FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 ++ ++ L+ ++P+ + + LG + + ++ L G +I LDK GE Sbjct: 267 FGRTQQPSEKPQILDERLQLLFDVPLNVTVELGRTKLALKEIMELGVGSLIELDKLTGEP 326 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VDI +NN+ IA+GE+ +++E +FGVR+ EI+N + Sbjct: 327 VDIYVNNKLIARGEVVVIDE---NFGVRITEIVNPK 359 >gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4] Length = 388 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 13/145 (8%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSP--TNNSEMLIQKNDVDNISEPI--------SSDSNN 60 I++ SM P+Q+T P T Q ++S+P+ S Sbjct: 238 IEEEPPKPSMATSTPVQETQSQQPFTTYQQPQAPQHFGGQHLSQPVNVQPAEFASFGQPA 297 Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + E N +++++IP+ + + LG + ++ LS+G +I LDK GE VDI +NN+ Sbjct: 298 LQESEARNLNMLLDIPLSVTVELGRTKRSVKEILELSQGSIIELDKLAGEPVDILVNNRL 357 Query: 121 IAKGEITIMEEDDTHFGVRVIEILN 145 IAKGE+ +++E +FGVR+ +I++ Sbjct: 358 IAKGEVVVIDE---NFGVRLTDIVS 379 >gi|330814982|ref|YP_004358687.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3] gi|327367375|gb|AEA58731.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3] Length = 149 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D + D + N + + + +P+S ++N + ++ D+I++IPVKM + Sbjct: 23 DEAMDDWAAALAEQNDQPIASGATGAGVFQPLSKAASN---STHNDIDMILDIPVKMTVE 79 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 80 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 136 Query: 143 ILNA 146 I+ Sbjct: 137 IITP 140 >gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605] gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206] gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15] gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86] gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605] gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206] Length = 137 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDMWAEALSEQKSTSGKSAADAMFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83] Length = 137 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMGDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74] Length = 134 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 118 RITDIITP 125 >gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227] gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227] Length = 137 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863] gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509] gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v] Length = 137 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 LNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70] gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70] Length = 134 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + + S + + + DLIM+IPVK Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQKSISSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 118 RITDIITP 125 >gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A] gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5] gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A] gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5] Length = 137 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ ++ S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTNSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G] gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180] gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357] Length = 134 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 118 RITDIITP 125 >gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718] gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718] Length = 137 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSISSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans Nor1] gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans Nor1] Length = 376 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTD--NFDLIM 73 + P ++TN + + + + N++ +P+ +T N +LIM Sbjct: 239 STPQPVMAPARETNFAQAQQAAALPKTHQPLTNVTVQPVQFAPLKPTTPTTSDTNINLIM 298 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P+++ + LG I ++ L G V+ LDK GE VDI +N + IAKGE+ +++E Sbjct: 299 DVPLQVTVELGRTRKLIREILELGPGSVVELDKLAGEPVDILVNGKLIAKGEVVVIDE-- 356 Query: 134 THFGVRVIEILNA 146 +FGVR+ EI++ Sbjct: 357 -NFGVRITEIVSP 368 >gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 EDL933] gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Sakai] gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS] gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4113] gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4401] gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4501] gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4486] gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4196] gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4076] gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869] gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508] gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94] gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A] gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22] gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019] gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171] gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1] gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4024] gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4206] gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4045] gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4042] gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4115] gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11] gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14588] gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1] gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a] gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989] gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14359] gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B] gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN [Escherichia coli O103:H2 str. 12009] gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN [Escherichia coli O26:H11 str. 11368] gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN [Escherichia coli O111:H- str. 11128] gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. FRIK2000] gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN [Escherichia coli O157:H7 str. FRIK966] gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str. CB9615] gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088] gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7] gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1] gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1] gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1] gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1] gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1] gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1] gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1] gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1] gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1] gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W] gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7] gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143] gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271] gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280] gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591] gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299] gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction [Escherichia coli O157:H7 str. EDL933] gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Sakai] gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS] gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94] gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4196] gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4113] gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4076] gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4401] gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4486] gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4501] gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869] gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508] gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A] gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22] gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019] gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171] gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1] gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4206] gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4045] gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4042] gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4115] gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli] gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11] gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14588] gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia coli 55989] gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia coli IAI1] gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia coli ED1a] gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. TW14359] gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN [Escherichia coli O26:H11 str. 11368] gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN [Escherichia coli O103:H2 str. 12009] gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN [Escherichia coli O111:H- str. 11128] gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042] gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str. CB9615] gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088] gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1] gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1] gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1] gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1] gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1] gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1] gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1] gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7] gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1] gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1] gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W] gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7] gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407] gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia coli W] gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1] gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC 74-1112] gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC1212] gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B] gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. G5101] gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str. USDA 5905] gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. LSU-61] gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14] gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010] gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68] gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11] gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520] gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482] gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120] gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489] gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007] gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3] gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167] gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. 1044] gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. 1125] gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143] gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271] gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280] gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591] gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299] gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82] gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88] Length = 137 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185] gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185] Length = 137 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADTVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536] gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11] gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str. E2348/69] gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39] gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026] gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412] gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354] gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli FVEC1302] gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1] gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101] gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75] gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536] gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11] gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN [Escherichia coli O127:H6 str. E2348/69] gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia coli IAI39] gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia coli UMN026] gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82] gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412] gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354] gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli FVEC1302] gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1] gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101] gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75] gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str. NRG 857C] gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3] gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327] gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2] gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1] Length = 137 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89] gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1] gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88] gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA] gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89] gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1] gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia coli S88] gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA] gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034] gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146] gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3] gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252] gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263] Length = 137 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGALQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627] gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627] Length = 137 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ +N S + + + DLIM+IPVK Sbjct: 4 LNNPADDNNGAMDDLWAEALSEQKSTNNKSAAEAMFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ L+ GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. W3110] gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli] gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia coli str. K12 substr. W3110] gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1] gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1] Length = 137 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739] gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739] Length = 137 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALNEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum Rt17-B1] gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum Rt17-B1] Length = 357 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 3/147 (2%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60 +KK+ ++ + K + + + S + + V + Sbjct: 207 FVKKMYEMIFGKTEKQTATSQTQKTPTQSVPSPSIPKEKTAVAAKPVQFEDFGKVPSAQE 266 Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + + L+ +IP+ + + LG + + ++ L G +I LDK GE VDI +NN+ Sbjct: 267 QTQVIDERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIELDKLTGEPVDIYVNNKL 326 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 IA+GE+ +++E +FGVR+ EI++ + Sbjct: 327 IARGEVVVIDE---NFGVRITEIVSPK 350 >gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli] gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str. 493-89] gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str. H 2687] Length = 137 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74] Length = 134 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQESTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 118 RITDIITP 125 >gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827] gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827] Length = 138 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 74/131 (56%), Gaps = 6/131 (4%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNI 75 S ++P TN S +E L Q+ ++ S + +N + + + + +LIM+I Sbjct: 2 SEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFANLDGQNALNQLSDINLIMDI 61 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 PV++ + LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + + Sbjct: 62 PVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---N 118 Query: 136 FGVRVIEILNA 146 +G+R+ +I+ Sbjct: 119 YGIRITDIITP 129 >gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905] Length = 137 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70] gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71] Length = 134 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ S + + + DLIM+IPVK Sbjct: 1 MNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 60 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 118 RITDIITP 125 >gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012] gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012] Length = 137 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQESTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073] gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972] gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1] gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1] gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073] gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972] gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1] gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1] gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972] gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1] Length = 137 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSGKSATDAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131] gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131] Length = 138 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 6/131 (4%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNI 75 S ++P TN S +E L Q+ ++ S + N + + + D+IM+I Sbjct: 2 SEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFDNFDGQNPLNQLSDIDMIMDI 61 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 PV++ + LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + + Sbjct: 62 PVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---N 118 Query: 136 FGVRVIEILNA 146 +G+R+ +I+ Sbjct: 119 YGIRITDIITP 129 >gi|206561842|ref|YP_002232607.1| flagellar motor switch protein FliN [Burkholderia cenocepacia J2315] gi|198037884|emb|CAR53828.1| flagellar motor switch protein FliN [Burkholderia cenocepacia J2315] Length = 151 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 + D + N + + + +P+S + + + ++ ++I++IPVKM + LG Sbjct: 28 MDDWAAALAEQNQQPVAAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 84 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 85 TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 141 Query: 146 A 146 Sbjct: 142 P 142 >gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301] gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 2457T] gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401] gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301] gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 2457T] gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401] gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017] gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str. 2457T] gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71] gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671] gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218] gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272] gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304] gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227] Length = 137 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|238025699|ref|YP_002909930.1| flagellar motor switch protein FliN [Burkholderia glumae BGR1] gi|237874893|gb|ACR27226.1| Flagellar motor switch protein FliN [Burkholderia glumae BGR1] Length = 144 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 ++ L D + N + + + +P+S ++N + ++ D+I++IPVKM + Sbjct: 18 ESSLDDWAAALAEQNDQPIASGAGGAGVFQPLSKAASNA---THNDIDMILDIPVKMTVE 74 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 75 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 131 Query: 143 ILNA 146 I+ Sbjct: 132 IITP 135 >gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2] gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2] Length = 432 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 6/140 (4%) Query: 9 SYIKDNLEGRSMHID-NPLQDTNVSSPTNNSEMLIQKNDVDNISEPI--SSDSNNILEKS 65 +Y + + S + P Q+ S + N+ S + ++ + Sbjct: 287 AYSQPVMNQASSPQNYIPAQNQAQQSGPQHFGGSYANGVQPNVQPAAFSSFEPYHMQDHE 346 Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N D++++IP+++ + LG + ++ LS G +I LDK GE VDI +NN+ IA+GE Sbjct: 347 TKNLDMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNNRLIAQGE 406 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++E +FGVRV +I++ Sbjct: 407 VVVIDE---NFGVRVTDIIS 423 >gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1] gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1] Length = 410 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 7/137 (5%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI----SEPISSDSNNILEKSTDN 68 + + P+Q P ++ + ++ S DSN I + N Sbjct: 268 PSEQPVYQQQSAPMQQPIYQEPQQFAQPARPAQPAQPVNVQQAQFASFDSNVISQSEARN 327 Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +++++IP+++ + LG + ++ LS G +I LDK GE VDI +N++ IAKGE+ + Sbjct: 328 LNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVV 387 Query: 129 MEEDDTHFGVRVIEILN 145 ++E +FGVR+ ++L+ Sbjct: 388 IDE---NFGVRITDVLS 401 >gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1] gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus WK1] Length = 383 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 71/128 (55%), Gaps = 3/128 (2%) Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 ++ + Q T +P + +Q+ S + + E + N D++++IP+ Sbjct: 250 QTKPAPSSAQQTQKEAPQHFGTGAVQQPVNVQPVAFASFEPAPLPEAESRNLDMLLDIPL 309 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 ++ + LG + ++++LS G +I LDK GE VDI +NN+ IAKGE+ +++E +FG Sbjct: 310 QVTVELGRTKRSVQDILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NFG 366 Query: 138 VRVIEILN 145 VRV I++ Sbjct: 367 VRVTSIIS 374 >gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] Length = 393 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 E S D P + IQ D + D+ + N +L+ ++ Sbjct: 264 EAASRSTDEPSAGRADKDRDGATARHIQTADF------VEFDAPPLAATEARNLELLFDV 317 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ + LG + ++ LS G +I LDK GE VD+ +NN+ IAKGE+ +++E + Sbjct: 318 PLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDE---N 374 Query: 136 FGVRVIEILN 145 FGVR+ +I++ Sbjct: 375 FGVRITDIIS 384 >gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs] gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alkaliphilus oremlandii OhILAs] Length = 385 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 KD + R M D P D + + + ++ + + + D +++ +N L Sbjct: 247 KDTMHPREMSYDTPNYDHRANFSNEAAATRNEPVNIRPV-QFQAFDDDSVKGVMPENISL 305 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I ++P+K+ + LG +IS ++ G +I LDK VGE +DI +N Q +A GE+ +++E Sbjct: 306 IQDVPLKITVELGRTVKKISEILEFGPGTIIELDKLVGEPLDILVNGQYVANGEVVVIDE 365 Query: 132 DDTHFGVRVIEILNA 146 ++G+RV +I+N Sbjct: 366 ---NYGIRVTDIVNP 377 >gi|170698079|ref|ZP_02889160.1| flagellar motor switch protein FliN [Burkholderia ambifaria IOP40-10] gi|170137040|gb|EDT05287.1| flagellar motor switch protein FliN [Burkholderia ambifaria IOP40-10] Length = 163 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 L D + N + + + +P+S + + + ++ ++I++IPVKM + LG Sbjct: 40 LDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 96 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 97 TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153 Query: 146 A 146 Sbjct: 154 P 154 >gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus curdlanolyticus YK9] gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus curdlanolyticus YK9] Length = 411 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 4/129 (3%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 + M+ P+ P ++ + +V + + + ++ N +L+++IP Sbjct: 278 QQPMYAQQPMYAQPPQGPNTYGQVPGRNVNVQPV-QFANFQGAPYVQADDTNLNLLLDIP 336 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 +K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ +++E +F Sbjct: 337 LKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NF 393 Query: 137 GVRVIEILN 145 GVRV +I++ Sbjct: 394 GVRVTDIVS 402 >gi|172059106|ref|YP_001806758.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6] gi|171991623|gb|ACB62542.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6] Length = 163 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 L D + N + + + +P+S + + + ++ ++I++IPVKM + LG Sbjct: 40 LDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 96 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 97 TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 153 Query: 146 A 146 Sbjct: 154 P 154 >gi|53723901|ref|YP_104281.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 23344] gi|52427324|gb|AAU47917.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 23344] Length = 124 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 + D + N + + + P+S + + + ++ DLI++IPVKM + LG Sbjct: 1 MDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVELGR 57 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 58 TKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 114 Query: 146 A 146 Sbjct: 115 P 115 >gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3] gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. C56-T3] Length = 393 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 E S D P + IQ D + D+ + N +L+ ++ Sbjct: 264 EAASRSTDEPPAGRADKERDGATARHIQTADF------VEFDAPPLAATEARNLELLFDV 317 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ + LG + ++ LS G +I LDK GE VD+ +NN+ IAKGE+ +++E + Sbjct: 318 PLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDE---N 374 Query: 136 FGVRVIEILN 145 FGVR+ +I++ Sbjct: 375 FGVRITDIIS 384 >gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus TCF52B] gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus TCF52B] Length = 365 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 10/154 (6%) Query: 1 MIKKVSKISY---IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD 57 +KK+ + + ++ +E + +P+ N + + + ++KN V S Sbjct: 208 FVKKLYSMIFESEKQEKVESSAAGTSSPVSTQNYAEHSATTTKNVEKNPVSVSPVQFQSF 267 Query: 58 SNNILEKST----DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + KST D +++IP+ + + LG + + ++ LS G +I LDK GE VD Sbjct: 268 ESGGTVKSTGEIPDRIQALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVD 327 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +N + IA+GE+ +++E +FGVR+ EI+ Q Sbjct: 328 IIVNGKLIARGEVVVIDE---NFGVRITEIVTPQ 358 >gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911] gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911] Length = 408 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 3/136 (2%) Query: 10 YIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69 Y + + M + + + + + + + E T N Sbjct: 267 YGQGTAQYSGMETQTQRPAAQAAPQHLGAHYPGGQPPQVQPAVFSNFEPQQLQESETKNL 326 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 +++++IP+++ + LG + +++ LS G +I LDK GE VDI +N++ IAKGE+ ++ Sbjct: 327 NMLLDIPLQVTVELGRTKRSVKDILELSAGSIIELDKLAGEPVDILVNSRLIAKGEVVVI 386 Query: 130 EEDDTHFGVRVIEILN 145 EE +FGVRV +I++ Sbjct: 387 EE---NFGVRVTDIIS 399 >gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61] gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC52] gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC61] gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC52] Length = 393 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 E S D P + IQ D + D+ + N +L+ ++ Sbjct: 264 EAASRSTDEPPAGRADKERDGATARHIQTADF------VEFDAPPLAATEARNLELLFDV 317 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ + LG + ++ LS G +I LDK GE VD+ +NN+ IAKGE+ +++E + Sbjct: 318 PLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDE---N 374 Query: 136 FGVRVIEILN 145 FGVR+ +I++ Sbjct: 375 FGVRITDIIS 384 >gi|83721171|ref|YP_440588.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|83654996|gb|ABC39059.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] Length = 143 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + + D + N + + + P+S + + + ++ D+I++IPVKM + Sbjct: 17 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAAS---STHNDIDMILDIPVKMTVE 73 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 74 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 130 Query: 143 ILNA 146 I+ Sbjct: 131 IITP 134 >gi|76810554|ref|YP_331657.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710b] gi|76580007|gb|ABA49482.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710b] Length = 143 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + + D + N + + + P+S + + + ++ DLI++IPVKM + Sbjct: 17 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 73 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 74 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 130 Query: 143 ILNA 146 I+ Sbjct: 131 IITP 134 >gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon 786 str. D14] gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon 786 str. D14] Length = 415 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 4/129 (3%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 G+ P Q P + + + +V + + + + + +N +L+M+IP Sbjct: 282 GQQAPYGYPPQGQPYGEPHHYGQAPGRNLNVQPV-QFANLGNPAFNQVDENNLNLLMDIP 340 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 +K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ +++E +F Sbjct: 341 LKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NF 397 Query: 137 GVRVIEILN 145 GVRV +I++ Sbjct: 398 GVRVTDIVS 406 >gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046] gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046] Length = 137 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN I++GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sibiricum 255-15] gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sibiricum 255-15] Length = 376 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + P P + +K V S E N ++ ++P+ + + Sbjct: 249 EQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQFGQFSEVQQEGPPGNIGMLYDVPLNVTVE 308 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + +++ L++G +I LDK GE VD+ +NN IA GE+ ++EE +FGVR+ E Sbjct: 309 LGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLIATGEVVVIEE---NFGVRITE 365 Query: 143 ILNAQ 147 I+N + Sbjct: 366 IVNTK 370 >gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10] gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulolyticum H10] Length = 402 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 7/142 (4%) Query: 9 SYIKDNLEGRSM-HIDNPLQDTNVSSPTNNS---EMLIQKNDVDNISEPISSDSNNILEK 64 SYI+ L+ I P+ ++ + + E Q+ V+ + + + Sbjct: 260 SYIEPPLQPVMQPQIPQPMMQQSMPNFGYDGVYQEPQRQRAPVNVQPAQFQAFDDGLSVT 319 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 N LIM++P+++ + LG I +++ G VI LDK GE VDI +N + IAKG Sbjct: 320 EKKNISLIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKG 379 Query: 125 EITIMEEDDTHFGVRVIEILNA 146 E+ +++E FGVR+ +I++ Sbjct: 380 EVVVIDES---FGVRITDIIHP 398 >gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6] Length = 137 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI N IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|67641903|ref|ZP_00440668.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse 4] gi|121599067|ref|YP_994774.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1] gi|124384349|ref|YP_001027841.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10229] gi|126449143|ref|YP_001082211.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10247] gi|167000455|ref|ZP_02266269.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20] gi|167717396|ref|ZP_02400632.1| flagellar motor switch protein FliN [Burkholderia pseudomallei DM98] gi|167736439|ref|ZP_02409213.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 14] gi|167813513|ref|ZP_02445193.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 91] gi|167822055|ref|ZP_02453526.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 9] gi|167843668|ref|ZP_02469176.1| flagellar motor switch protein FliN [Burkholderia pseudomallei B7210] gi|167900651|ref|ZP_02487856.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC 13177] gi|167908871|ref|ZP_02495962.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 112] gi|167916910|ref|ZP_02504001.1| flagellar motor switch protein FliN [Burkholderia pseudomallei BCC215] gi|226193338|ref|ZP_03788948.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pakistan 9] gi|121227877|gb|ABM50395.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1] gi|124292369|gb|ABN01638.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10229] gi|126242013|gb|ABO05106.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC 10247] gi|225934938|gb|EEH30915.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pakistan 9] gi|238522916|gb|EEP86358.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse 4] gi|243063643|gb|EES45829.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20] Length = 162 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + + D + N + + + P+S + + + ++ DLI++IPVKM + Sbjct: 36 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 92 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 93 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 149 Query: 143 ILNA 146 I+ Sbjct: 150 IITP 153 >gi|329929333|ref|ZP_08283086.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5] gi|328936702|gb|EGG33145.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5] Length = 420 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74 + +SM P Q + P M + +V + + + S + +N +L+M+ Sbjct: 286 IPQQSMPYGQP-QTPYQAQPQQYGGMPNRNVNVQPV-QFANLQSAPYTQVDENNLNLLMD 343 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+ +++E Sbjct: 344 IPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVIDE--- 400 Query: 135 HFGVRVIEILN 145 +FGVRV +I++ Sbjct: 401 NFGVRVTDIVS 411 >gi|115350087|ref|YP_771926.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD] gi|115280075|gb|ABI85592.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD] Length = 161 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D L D + N + + + +P+S + + + ++ ++I++IPVKM + Sbjct: 35 DQGLDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 91 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 92 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 148 Query: 143 ILNA 146 I+ Sbjct: 149 IITP 152 >gi|297538202|ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera sp. 301] gi|297257549|gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera sp. 301] Length = 157 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 18 RSMHIDNPLQDTNVSSPTNNSE--MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 D + + +Q + + + N L+ + ++ D I++I Sbjct: 21 AEQSTAEATDDWGAAMAEQEATDTSALQSKNAEQTQVFTEFTAKNKLQDTQNDIDFILDI 80 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 PV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + Sbjct: 81 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---K 137 Query: 136 FGVRVIEILNA 146 FG+R+ +I+ Sbjct: 138 FGIRLTDIITP 148 >gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium modesticaldum Ice1] gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium modesticaldum Ice1] Length = 375 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 K T N LIM++P+++ + LG I ++++L G VI LDK GE VDI +N Sbjct: 283 PQRSGKDTTNLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNG 342 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + IAKGE+ +++E +FGVR+ +I++ Sbjct: 343 KLIAKGEVVVIDE---NFGVRITDIVSP 367 >gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis DSM 12885] gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis DSM 12885] Length = 287 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 G++ P P + + + + S DL++++P Sbjct: 154 GQAATAGEPALRWE-PGPGFTAGAAFRPFPGAEGTAAAGPAGGDGAGPSRGTLDLVLDVP 212 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 +++ + LG + ++ ++ G V+ LD+ GE VD+ +N + IA+GE+ +++E +F Sbjct: 213 LQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVIDE---NF 269 Query: 137 GVRVIEILNA 146 G+R+ +I++ Sbjct: 270 GIRITDIVSP 279 >gi|53717667|ref|YP_106653.1| flagellar motor switch protein [Burkholderia pseudomallei K96243] gi|126440526|ref|YP_001057085.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668] gi|126454703|ref|YP_001064315.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106a] gi|134281531|ref|ZP_01768239.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305] gi|167892139|ref|ZP_02479541.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 7894] gi|217423854|ref|ZP_03455354.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576] gi|237814423|ref|YP_002898874.1| flagellar motor switch protein FliN [Burkholderia pseudomallei MSHR346] gi|242314847|ref|ZP_04813863.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106b] gi|254174650|ref|ZP_04881311.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 10399] gi|254184093|ref|ZP_04890684.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1655] gi|254186559|ref|ZP_04893076.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pasteur 52237] gi|254201358|ref|ZP_04907722.1| flagellar motor switch protein FliN [Burkholderia mallei FMH] gi|254206700|ref|ZP_04913051.1| flagellar motor switch protein FliN [Burkholderia mallei JHU] gi|254260996|ref|ZP_04952050.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710a] gi|254298639|ref|ZP_04966090.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 406e] gi|254357363|ref|ZP_04973637.1| flagellar motor switch protein FliN [Burkholderia mallei 2002721280] gi|52208081|emb|CAH34011.1| probable flagellar motor switch protein [Burkholderia pseudomallei K96243] gi|126220019|gb|ABN83525.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668] gi|126228345|gb|ABN91885.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106a] gi|134247198|gb|EBA47284.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305] gi|147747252|gb|EDK54328.1| flagellar motor switch protein FliN [Burkholderia mallei FMH] gi|147752242|gb|EDK59308.1| flagellar motor switch protein FliN [Burkholderia mallei JHU] gi|148026427|gb|EDK84512.1| flagellar motor switch protein FliN [Burkholderia mallei 2002721280] gi|157808697|gb|EDO85867.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 406e] gi|157934244|gb|EDO89914.1| flagellar motor switch protein FliN [Burkholderia pseudomallei Pasteur 52237] gi|160695695|gb|EDP85665.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC 10399] gi|184214625|gb|EDU11668.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1655] gi|217392917|gb|EEC32939.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576] gi|237504588|gb|ACQ96906.1| flagellar motor switch protein FliN [Burkholderia pseudomallei MSHR346] gi|242138086|gb|EES24488.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1106b] gi|254219685|gb|EET09069.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 1710a] Length = 165 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + + D + N + + + P+S + + + ++ DLI++IPVKM + Sbjct: 39 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 95 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 96 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 152 Query: 143 ILNA 146 I+ Sbjct: 153 IITP 156 >gi|254251032|ref|ZP_04944350.1| flagellar motor switch protein [Burkholderia dolosa AUO158] gi|124893641|gb|EAY67521.1| flagellar motor switch protein [Burkholderia dolosa AUO158] Length = 166 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 L D + N + + + +P+S + + + ++ ++I++IPVKM + LG Sbjct: 43 LDDWAAALAEQNQQPVPAGATGAGVFQPLSKAAPS---STHNDIEMILDIPVKMTVELGR 99 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 100 TKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 156 Query: 146 A 146 Sbjct: 157 P 157 >gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC 35469] gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia fergusonii ATCC 35469] gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253] gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227] Length = 137 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPADENNGALDDLWAEALSEQQTTSSKSATDAVFQQLGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. G11MC16] gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. G11MC16] Length = 394 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 9/113 (7%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 + +E IQ D +P + N +L+ ++P+++ + LG + Sbjct: 282 EEESVAERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQE 335 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 ++ LS G +I LDK GE VDI +NN+ IAKGE+ +++E +FGVR+ +I++ Sbjct: 336 ILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDE---NFGVRITDIVS 385 >gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163] Length = 138 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74 + M N D ++S+ ++ + ++ + S + D+IM+ Sbjct: 1 MRNSPMSDSNNPSDGDISADDMWADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMIMD 60 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + Sbjct: 61 IPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD--- 117 Query: 135 HFGVRVIEILNA 146 +GVR+ +I+ Sbjct: 118 KYGVRITDIITP 129 >gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] Length = 393 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 9/113 (7%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 + +E IQ D +P + N +L+ ++P+++ + LG + Sbjct: 281 EEESVAERHIQAADFAEFDDP------PLAATEARNLELLFDVPLQVTVELGRTKRSVQE 334 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 ++ LS G +I LDK GE VDI +NN+ IAKGE+ +++E +FGVR+ +I++ Sbjct: 335 ILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDE---NFGVRITDIVS 384 >gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein [Paenibacillus polymyxa SC2] gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus polymyxa SC2] Length = 437 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 S + +N +L+M+IP+++ + LG QI +++ LS+G +I LDK GE VDI + Sbjct: 343 QSGGFPQVDENNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMV 402 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 NN+ IAKGE+ +++E +FGVRV +I++ Sbjct: 403 NNKLIAKGEVVVIDE---NFGVRVTDIVS 428 >gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681] gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681] Length = 436 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 3/89 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 S + +N +L+M+IP+++ + LG QI +++ LS+G +I LDK GE VDI + Sbjct: 342 QSGAFAQVDENNLNLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILV 401 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILN 145 NN+ IAKGE+ +++E +FGVRV +I++ Sbjct: 402 NNKLIAKGEVVVIDE---NFGVRVTDIVS 427 >gi|171316889|ref|ZP_02906098.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5] gi|171097970|gb|EDT42788.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5] Length = 172 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 L D + N + + + +P+S + + + ++ ++I++IPVKM + LG Sbjct: 49 LDDWAAALAEQNLQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 105 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 106 TKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIIT 162 Query: 146 A 146 Sbjct: 163 P 163 >gi|78064700|ref|YP_367469.1| Type III secretion system outer membrane O protein [Burkholderia sp. 383] gi|77965445|gb|ABB06825.1| Type III secretion system outer membrane O protein [Burkholderia sp. 383] Length = 163 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D + D + N + + + +P+S + + + ++ ++I++IPVKM + Sbjct: 37 DPGMDDWAAALAEQNQQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 93 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 94 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 150 Query: 143 ILNA 146 I+ Sbjct: 151 IITP 154 >gi|261407971|ref|YP_003244212.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. Y412MC10] gi|261284434|gb|ACX66405.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. Y412MC10] Length = 420 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74 + +SM P Q + P M + +V + + + S + +N +L+M+ Sbjct: 286 IPQQSMPYGQP-QMPYQTQPQQYGGMPNRNVNVQPV-QFANLQSAPYTQVDENNLNLLMD 343 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+ +++E Sbjct: 344 IPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVIDE--- 400 Query: 135 HFGVRVIEILN 145 +FGVRV +I++ Sbjct: 401 NFGVRVTDIVS 411 >gi|253996307|ref|YP_003048371.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8] gi|253982986|gb|ACT47844.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8] Length = 157 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 + D + N +Q + + + N L ++ ++ D I++IPV Sbjct: 25 EQASSETAADDWGAAM--NEQAAALQDDKAEKAQVFTEFTAKNKLHETQNDIDFILDIPV 82 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 ++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG Sbjct: 83 QLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFG 139 Query: 138 VRVIEILNA 146 +R+ +I+ Sbjct: 140 IRLTDIITP 148 >gi|254194758|ref|ZP_04901189.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13] gi|169651508|gb|EDS84201.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13] Length = 165 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + + D + N + + + P+S + + + ++ DLI++IPVKM + Sbjct: 39 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKATAS---STHNDIDLILDIPVKMTVE 95 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ IN IA+GE+ ++ + FG+R+ + Sbjct: 96 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLINGCLIAQGEVVVVND---KFGIRLTD 152 Query: 143 ILNA 146 I+ Sbjct: 153 IITP 156 >gi|107021593|ref|YP_619920.1| flagellar motor switch FliN [Burkholderia cenocepacia AU 1054] gi|116688063|ref|YP_833686.1| flagellar motor switch protein FliN [Burkholderia cenocepacia HI2424] gi|170731413|ref|YP_001763360.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] gi|105891782|gb|ABF74947.1| Flagellar motor switch FliN [Burkholderia cenocepacia AU 1054] gi|116646152|gb|ABK06793.1| flagellar motor switch protein FliN [Burkholderia cenocepacia HI2424] gi|169814655|gb|ACA89238.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] Length = 162 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D + D + N + + + +P+S + + + ++ ++I++IPVKM + Sbjct: 36 DPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 92 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 93 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 149 Query: 143 ILNA 146 I+ Sbjct: 150 IITP 153 >gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2] gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580] gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2] Length = 377 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 28/169 (16%) Query: 2 IKKVSKISYIKDNLEG-----------RSMHIDNPLQDTNVSSP------TNNSEMLIQK 44 I ++ +++ KD ++ ++ + P+Q+ +P T E ++ Sbjct: 203 IMQLYPLTFAKDLIDELTNQDGGEEPVKTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKR 262 Query: 45 NDVDNISEPI--------SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 +SEP+ S + N D++M+IP+ + + LG + ++ L Sbjct: 263 QGTAKVSEPVQVAPAEFQSFAPQTEAQPHLQNLDMLMDIPLSVTVELGRTNRSVKEVLEL 322 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 S G +I LDK GE VDI +N + +AKGE+ +++E +FGVRV +IL+ Sbjct: 323 STGSIIELDKLAGEPVDILVNQRVVAKGEVVVIDE---NFGVRVTDILS 368 >gi|167579275|ref|ZP_02372149.1| flagellar motor switch protein FliN [Burkholderia thailandensis TXDOH] gi|167617381|ref|ZP_02386012.1| flagellar motor switch protein FliN [Burkholderia thailandensis Bt4] Length = 165 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + + D + N + + + P+S + + + ++ D+I++IPVKM + Sbjct: 39 EMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAAS---STHNDIDMILDIPVKMTVE 95 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 96 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 152 Query: 143 ILNA 146 I+ Sbjct: 153 IITP 156 >gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905] gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905] Length = 407 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDL 71 + + +Q P ++ V+ ++ S DSN I + N ++ Sbjct: 268 PPAQPVYQQPEATMQQPVYQEPQQFAQPARPAQPVNVQQAQFASFDSNVISQSEARNLNM 327 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +++IP+++ + LG + ++ LS G +I LDK GE VDI +N++ IAKGE+ +++E Sbjct: 328 LLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDE 387 Query: 132 DDTHFGVRVIEILN 145 +FGVR+ ++L+ Sbjct: 388 ---NFGVRITDVLS 398 >gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804] gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii] Length = 181 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 60/98 (61%), Gaps = 7/98 (7%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++ +P++ + + ++ DLIM++PV++ + LG + I NL+ L +G V+ LD Sbjct: 80 SVFKPLADAAGG----NGNDIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLA 135 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE +DI +N IA+GE+ ++EE +G+R+ +I+ Sbjct: 136 GEPMDIFVNGYLIAQGEVVVVEE---KYGIRLTDIITP 170 >gi|332702323|ref|ZP_08422411.1| flagellar motor switch protein FliN [Desulfovibrio africanus str. Walvis Bay] gi|332552472|gb|EGJ49516.1| flagellar motor switch protein FliN [Desulfovibrio africanus str. Walvis Bay] Length = 181 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 ++ E L K+ V + + E++ + D I++IP+++ LG Sbjct: 57 EEEKNIKAEKRQEFLSSKSQVAEFKDLTHEAKSPRPEQTKRDLDFILDIPLEVSAELGRT 116 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + I+ L+ L +G V+ L+K GE ++I +N + +A+GE ++ E FG+R+ +I++ Sbjct: 117 KLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 173 >gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetivibrio cellulolyticus CD2] gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetivibrio cellulolyticus CD2] Length = 410 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 + ++ + + ++ N LIM++P+++ + LG I +++ G +I Sbjct: 307 REPINVQPAQFQAFDDGMISFERKNIGLIMDVPLQVTVELGRTNRLIKDILEFGPGSIIE 366 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LDK GE VDI +N + IAKGE+ +++E FGVR+ +I++ Sbjct: 367 LDKLAGEPVDILVNGKVIAKGEVVVIDES---FGVRITDIIHP 406 >gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1] gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1] Length = 137 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++N D N + +E L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNLADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 134 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L +K N S + + + DLIM+IPVK Sbjct: 1 MNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 60 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 118 RITDIITP 125 >gi|254246640|ref|ZP_04939961.1| Surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia PC184] gi|124871416|gb|EAY63132.1| Surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia PC184] Length = 164 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D + D + N + + + +P+S + + + ++ ++I++IPVKM + Sbjct: 38 DPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVE 94 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 95 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 151 Query: 143 ILNA 146 I+ Sbjct: 152 IITP 155 >gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13] Length = 410 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNILEKSTDNFDLI 72 E + P+++ + + +P S ++ + E +N +++ Sbjct: 272 EEERSVTEAPIREHAYAGGHERPSNPAPRTQQAVNVQPAVFSSFETTTVEESEPNNLNML 331 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++IP+++ + LG + +++ LS G +I LDK GE VDI +NN+ IA+GE+ +++E Sbjct: 332 LDIPLQVTVELGRTKRSVKDILELSTGSIIELDKLAGEPVDILVNNKLIAQGEVVVIDES 391 Query: 133 DTHFGVRVIEILN 145 FGVRV +I++ Sbjct: 392 ---FGVRVTDIVS 401 >gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41] gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus C3-41] Length = 407 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDL 71 + + +Q P ++ V+ ++ S DSN I + N ++ Sbjct: 268 PPAQPVYQQPEATMQQPVYQEPQQFAQPARAAQPVNVQQAQFASFDSNVISQSEARNLNM 327 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +++IP+++ + LG + ++ LS G +I LDK GE VDI +N++ IAKGE+ +++E Sbjct: 328 LLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDE 387 Query: 132 DDTHFGVRVIEILN 145 +FGVR+ ++L+ Sbjct: 388 ---NFGVRITDVLS 398 >gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. JDR-2] gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. JDR-2] Length = 421 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 7/129 (5%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 +S D +Q + + + + V + + + ++ N +L+++IP Sbjct: 291 QQSAAFDIQMQPQGPQTYGHAANRNVNVQPV----QFANFNQAPYVQTDETNLNLLLDIP 346 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 +K+ + LG QI +++ LS+G +I LDK GE VDI +NN+ IAKGE+ +++E +F Sbjct: 347 LKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NF 403 Query: 137 GVRVIEILN 145 GVRV +I++ Sbjct: 404 GVRVTDIVS 412 >gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi] gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 137 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L +K N S + + + DLIM+IPVK Sbjct: 4 MNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|315121855|ref|YP_004062344.1| putative flagellar motor switch protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495257|gb|ADR51856.1| putative flagellar motor switch protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 136 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 8/136 (5%) Query: 20 MHIDNPLQDTNVSSPT--------NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 MHID+PLQD + S + +ND+D+ SE ISS+SNNI EKS+DN DL Sbjct: 1 MHIDSPLQDHDQSEECTLKNNSHIFQNTTENPQNDLDDSSEKISSNSNNIFEKSSDNIDL 60 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 IMNIPV +QIILGSCCMQISNLVNLSKGDVITLDKRVGE+VDITINNQKIAKGEITIME+ Sbjct: 61 IMNIPVNIQIILGSCCMQISNLVNLSKGDVITLDKRVGEAVDITINNQKIAKGEITIMED 120 Query: 132 DDTHFGVRVIEILNAQ 147 DDTHFGVRVIE+LN++ Sbjct: 121 DDTHFGVRVIELLNSK 136 >gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 134 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L ++ N S + + + DLIM+IPVK Sbjct: 1 MNNPSDENTGALDDLWADALNEQKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 60 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 61 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 117 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 118 RITDIITP 125 >gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 137 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L ++ N S + + + DLIM+IPVK Sbjct: 4 MNNPSDENTGALDDLWADALNEQKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|91776322|ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT] gi|91710309|gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT] Length = 142 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90 S +Q N + S N L ++ ++ D I++IPV++ + LG + I Sbjct: 21 QSQAEQAEASALQDNKAEQAPVFTEFSSKNKLHETQNDIDFILDIPVQLTVELGRTKIAI 80 Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 81 KNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 133 >gi|134294172|ref|YP_001117907.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4] gi|134137329|gb|ABO53072.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4] Length = 169 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 6/121 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 L D + N + ++ + +P+S + + + ++ ++I++IPVKM + LG Sbjct: 46 LDDWAAALAEQNEQPVVAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGR 102 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD GE +D+ +N +A+GE+ ++ + FG+R+ +I+ Sbjct: 103 TKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLLAQGEVVVVND---KFGIRLTDIIT 159 Query: 146 A 146 Sbjct: 160 P 160 >gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont] Length = 136 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 7/128 (5%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEP----ISSDSNNILEKSTDNFDLIMNIPVK 78 D+ ++S+ +E + ++ + ++P S + S + DLIM+IPVK Sbjct: 3 DSKKPSDDISADDLWAEAMDEQAATSSAAKPGDNVFKSLEASAASGSLQDIDLIMDIPVK 62 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 63 LTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQGEVVVVND---KYGV 119 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 120 RITDIITP 127 >gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 137 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L ++ N S + + + DLIM+IPVK Sbjct: 4 MNNPSDENTGALDDLWADALNEQKATTNKSTADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|315648126|ref|ZP_07901227.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus vortex V453] gi|315276772|gb|EFU40115.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus vortex V453] Length = 419 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 +SM P P M + +V + + + S + +N +L+M+IP Sbjct: 287 PQSMPYGQPQMPYQG-HPQQYGGMPNRNVNVQPV-QFANLQSAPYTQVDENNLNLLMDIP 344 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 +K+ + LG QI +++ +S+G +I LDK GE VDI +N++ IAKGE+ +++E +F Sbjct: 345 LKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVIDE---NF 401 Query: 137 GVRVIEILN 145 GVRV +I++ Sbjct: 402 GVRVTDIVS 410 >gi|329901243|ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium IMCC9480] gi|327549175|gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium IMCC9480] Length = 137 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 D + N + + + ++ D I++IPV++ + LG Sbjct: 12 DDWGAAIAEQEQAEKAALNAQQAAPTVFQEFAGSSKLATHNDIDFILDIPVQLTVELGRT 71 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I++ Sbjct: 72 KIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIISP 128 >gi|167560938|ref|ZP_02353854.1| flagellar motor switch protein FliN [Burkholderia oklahomensis EO147] gi|167568198|ref|ZP_02361072.1| flagellar motor switch protein FliN [Burkholderia oklahomensis C6786] Length = 162 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D + D + N + + P+S + + ++ DLI++IPVKM + Sbjct: 36 DAGMDDWAAALAEQNQLPIEPGATGAGVFRPLSKAAAA---STHNDIDLILDIPVKMTVE 92 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 93 LGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 149 Query: 143 ILNA 146 I+ Sbjct: 150 IITP 153 >gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Bacillus pumilus ATCC 7061] gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Bacillus pumilus ATCC 7061] Length = 374 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 25/166 (15%) Query: 2 IKKVSKISYIKDNLEG--RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSN 59 I ++ I++ KD + + P+QDT VS+P ++ + P + Sbjct: 203 IMQLYPITFAKDLIAELTDPAQEEEPVQDTQVSTPEPQQAAPQTQSAPAQQAAPPKRQAK 262 Query: 60 NILEKSTD--------------------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + N D++M+IP+ + + LG + ++ LS G Sbjct: 263 PKPAAPVNVAPVEFEAFSEPQHTTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAG 322 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +I LDK GE VDI +N + +AKGE+ +++E +FGVRV +IL+ Sbjct: 323 SIIELDKLAGEPVDILVNKRIVAKGEVVVIDE---NFGVRVTDILS 365 >gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6] gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6] Length = 153 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 62/109 (56%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 +E+L + + + S + + ++ +LI++IPV++ + LG + I N++ L+ Sbjct: 37 AEVLPSPDHGAPAAFANFTSSAGSVNQPGNDINLILDIPVQLTVELGRTRIPIKNILQLA 96 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 97 QGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIVTP 142 >gi|33592494|ref|NP_880138.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I] gi|33572140|emb|CAE41683.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I] gi|332381912|gb|AEE66759.1| flagellar motor switch protein FliN [Bordetella pertussis CS] Length = 166 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQII 82 P Q + + ++ L ++N + E + DLIM++PV+M + Sbjct: 35 APTQADGLKPQDDWADALAEQNAAPAAAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVE 94 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ ++++ +G+R+ + Sbjct: 95 LGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDD---KYGIRLTD 151 Query: 143 ILNA 146 I+ Sbjct: 152 IITP 155 >gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp. MED105] gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp. MED105] Length = 149 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + Q +D S + ++ + ++ D+I++IPV++ + LG + I +++ L++G Sbjct: 37 LFAQASDAKPASGLFQPFAGSVASGTQNDIDMILDIPVQLTVELGRTKIPIKHILQLAQG 96 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 VI LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 97 SVIELDGLAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 140 >gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM 6192] gi|306532337|gb|ADN01871.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM 6192] gi|315186375|gb|EFU20135.1| flagellar motor switch protein FliN [Spirochaeta thermophila DSM 6578] Length = 350 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 10/152 (6%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI------- 54 + + + +++ + P + S+ + V P Sbjct: 194 VIEFFDVPFVRSLVNPSRPSPSQPANQASTSAQGATMAQSQGQPTVWGPGAPQVQQVQFP 253 Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S + + N L+M++ +++ + LG + ++ + +G +I LDK GE VDI Sbjct: 254 SFPEGALGPEQQANISLLMDVYMELTVELGRTKKMVKEILAMGEGTIIELDKLAGEPVDI 313 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N++ IA+GE+ +++E +FGVRV EI++ Sbjct: 314 LVNHKLIARGEVVVIDE---NFGVRVTEIISP 342 >gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] Length = 133 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 M N D ++S+ ++ + ++ + ++ S + D+IM+IPVK+ Sbjct: 1 MSDTNKPSDDDISADDMWADAMNEQTKSPSTDGVFNTFEGGENNASLQDIDMIMDIPVKL 60 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR Sbjct: 61 TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117 Query: 140 VIEILNA 146 + +I+ Sbjct: 118 ITDIITP 124 >gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC 35316] gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC 35316] Length = 137 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + + ++ L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPSDENSGALDDLWADALNEQKTTPGKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 137 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + + ++ L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPSDENSGALDDLWADALNEQKATPAKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 137 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + + ++ L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPSDENSGALDDLWADALNEQKTTPTKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium papyrosolvens DSM 2782] gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium papyrosolvens DSM 2782] Length = 400 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 E Q++ V + + + N LIM++P+++ + LG I +++ Sbjct: 291 QEPQRQRSPVSVQPVQFQAFDDGLSATEKKNISLIMDLPLQVTVELGRTQKLIKDILEFG 350 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G VI LDK GE VDI +N + IAKGE+ +++E FGVR+ +I++ Sbjct: 351 SGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDES---FGVRITDIIHP 396 >gi|146282918|ref|YP_001173071.1| flagellar motor switch protein [Pseudomonas stutzeri A1501] gi|145571123|gb|ABP80229.1| flagellar motor switch protein FliN [Pseudomonas stutzeri A1501] Length = 193 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D+I++IPV + + +GS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ Sbjct: 109 PNLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEV 168 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ ++++ Sbjct: 169 VVVNE---KFGIRLTDVISP 185 >gi|325981183|ref|YP_004293585.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212] gi|325530702|gb|ADZ25423.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212] Length = 180 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 3/129 (2%) Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 +++S S + + N S + + + DLI++IPV Sbjct: 46 AEQSTAEQSSTNSLASSGKESNTSVFGSQNANPSVFQEFSKDGESHGTRHDIDLILDIPV 105 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 +M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG Sbjct: 106 QMTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFG 162 Query: 138 VRVIEILNA 146 +R+ +I+ Sbjct: 163 IRLTDIITP 171 >gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617] Length = 133 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 M N D ++S+ ++ + ++ + S + + D+IM+IPVK+ Sbjct: 1 MSDSNNPSDDDISADDMWADAMSEQTQSPSGDGVFKSLNGGEHSAGLQDIDMIMDIPVKL 60 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR Sbjct: 61 TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117 Query: 140 VIEILNA 146 + +I+ Sbjct: 118 ITDIITP 124 >gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 137 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica] Length = 144 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 11/137 (8%) Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--------NF 69 R+ + + Q T+ ++ + +M + + +P S S I E + Sbjct: 2 RNSPMSDAKQPTDTAATGSAEDMWAEALEQQAAQQPTSDSSAAIFESLEPQDALAHLSDI 61 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ Sbjct: 62 DLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 121 Query: 130 EEDDTHFGVRVIEILNA 146 + +G+R+ +I+ Sbjct: 122 SD---KYGIRITDIITP 135 >gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ] gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ] Length = 155 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 4/129 (3%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-SNNILEKSTDNFDLIMNIPV 77 + P +D ++ + + N + + + + + D+IM+IPV Sbjct: 21 AEQAATPAEDDPWAAALAEQAATLPEPATQNAGQNVFKPLGKSATAEGMRDLDMIMDIPV 80 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 K+ + LG + I L+ L++G V+ LD GE +DI IN IA+GE+ ++++ +G Sbjct: 81 KLSVELGRTRITIKQLLELAQGSVVELDGLAGEPMDILINGYLIAQGEVVVVDD---KYG 137 Query: 138 VRVIEILNA 146 +R+ EI+ Sbjct: 138 IRITEIITP 146 >gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638] gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638] Length = 137 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPSDANSGALDDLWADALNEQQAPASKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|167464155|ref|ZP_02329244.1| flagellar motor switch protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382381|ref|ZP_08056288.1| flagellar motor switching and energizing phosphatase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153734|gb|EFX46109.1| flagellar motor switching and energizing phosphatase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 415 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 75/130 (57%), Gaps = 7/130 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG S ++ +P P +S M+ + +V + + + + + N +L+++I Sbjct: 284 EGGSAYLASPAYKE---EPAASSGMMQRNVNVQPV-QFSNLQAGGYAQADETNLNLLLDI 339 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+K+ + LG I +++ L +G ++ LDK GE VDI +NN+ IAKGE+ +++E + Sbjct: 340 PLKVTVELGRTNKMIKDILELQQGSIVELDKLAGEPVDILVNNKLIAKGEVVVIDE---N 396 Query: 136 FGVRVIEILN 145 FGVRV +I++ Sbjct: 397 FGVRVTDIVS 406 >gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168] gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168] Length = 137 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPSDENTGALDDLWADALNEQKTTPAKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2] gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2] Length = 137 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPSDENTGALDDLWADALNEQKTTPTKSAADAVFQQLGGGDVSGALQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1] gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1] Length = 401 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 83/148 (56%), Gaps = 8/148 (5%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQ----DTNVSSPTNNSEMLIQKNDVDNISEPISSD 57 ++ V ++S ++ + + + DN Q + S N++ + Q V S + + Sbjct: 249 LEPVQRVSPVQPSYSQQDTYRDNTAQHVPQEKTQSQHFGNNKNVEQPVQVQPASF-TNFE 307 Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 ++ + + N D++++IP+ + + LG + +++ LS G +I LDK GE VD+ +N Sbjct: 308 QPSMSKPESKNLDMLLDIPLNVTVELGRTNRSVKDILELSSGSIIELDKLAGEPVDVLVN 367 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145 ++ IAKGE+ +++E +FGVR+ +I++ Sbjct: 368 SRLIAKGEVVVIDE---NFGVRITDIVS 392 >gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] Length = 137 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPSDENTGALDDLWADALNEQKTTTTKSAADAVFQQLGGGDVSGALQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|167585019|ref|ZP_02377407.1| flagellar motor switch protein FliN [Burkholderia ubonensis Bu] Length = 163 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 7/122 (5%) Query: 26 LQDTNVSSPTNNSEMLIQ-KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 L D + N + ++ + +P+S ++ + ++ D+I++IPVKM + LG Sbjct: 39 LDDWAAALAEQNQQPAVEPGATGAGVFQPLSKAAST---STHNDIDMILDIPVKMTVELG 95 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 96 RTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 152 Query: 145 NA 146 Sbjct: 153 TP 154 >gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] Length = 133 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 M N D ++S+ ++ + ++ + S + D+IM+IPVK+ Sbjct: 1 MSDSNNPSDGDISADDMWADAMSEQTQSPSGDGVFKSLDGGEHSAGLQDIDMIMDIPVKL 60 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR Sbjct: 61 TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117 Query: 140 VIEILNA 146 + +I+ Sbjct: 118 ITDIITP 124 >gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC BAA-2158] Length = 133 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 M N D ++S+ ++ + ++ + S + D+IM+IPVK+ Sbjct: 1 MSESNNPSDDDISADDMWADAMNEQAKSPSGDGVFKSLDGGEHAAGLQDIDMIMDIPVKL 60 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR Sbjct: 61 TVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117 Query: 140 VIEILNA 146 + +I+ Sbjct: 118 ITDIITP 124 >gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda] Length = 134 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 4/129 (3%) Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 R + + D E + +I + + ++ + S + DLI++IPV Sbjct: 1 RQQAVSDAQDDAADLWAEAMGEQQTAGQNNGDIFQNLD-ETPTLGAGSGQDIDLILDIPV 59 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 K+ + LG M I L+ LS+G V+ LD GE +D+ IN IA+GE+ ++ + FG Sbjct: 60 KLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVND---KFG 116 Query: 138 VRVIEILNA 146 VR+ +I+ Sbjct: 117 VRITDIITP 125 >gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC BAA-895] gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895] Length = 137 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP + + ++ L ++ + S + + + DLIM+IPVK Sbjct: 4 MNNPSDENTGALDDLWADALNEQKTTTSKSAADAVFQQLGGGDVSGNLQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GV Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 121 RITDIITP 128 >gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 354 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 3/81 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE Sbjct: 268 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 327 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + +++E +FGVRV +I++ Sbjct: 328 VVVIDE---NFGVRVTDIVSP 345 >gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein [Edwardsiella tarda EIB202] gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein [Edwardsiella tarda EIB202] gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60] Length = 137 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 ++ + S + DLI++IPVK+ + LG M I L+ LS+G V+ LD GE +D+ I Sbjct: 42 ETPTLGAGSGQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLI 101 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N IA+GE+ ++ + FGVR+ +I+ Sbjct: 102 NGYLIAQGEVVVVND---KFGVRITDIITP 128 >gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum GMI1000] gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia solanacearum GMI1000] Length = 156 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 N + ++ +P+ ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 49 NPLSSVFKPLMPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 108 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 109 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 147 >gi|186477686|ref|YP_001859156.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815] gi|184194145|gb|ACC72110.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815] Length = 154 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 73/135 (54%), Gaps = 7/135 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE----KSTDNFDL 71 E ++ P ++ +S + + L ++ND +S + + + + ++ D+ Sbjct: 14 EESKVNDSMPGSGSDEASLDDWASALAEQNDNTAVSASTAGVFQPLSKVEPTTTRNDIDM 73 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + Sbjct: 74 ILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 133 Query: 132 DDTHFGVRVIEILNA 146 FG+R+ +I+ Sbjct: 134 ---KFGIRLTDIITP 145 >gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043] gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043] Length = 175 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 7/136 (5%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFD 70 +++L +M +D + ++ + Q + D + +P+ +++ + + D Sbjct: 37 EEDLWAAAMAEQQATEDEANAEASDPAPDKSQAQNADHEVFKPLDEGASST---TPRDLD 93 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LIM+IPVK+ + LG + I L+ L++G VI LD GE +DI IN IA+GE+ +++ Sbjct: 94 LIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVVD 153 Query: 131 EDDTHFGVRVIEILNA 146 + +G+R+ EI+ Sbjct: 154 D---KYGIRITEIITP 166 >gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b] gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b] Length = 136 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 12/126 (9%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDS------NNILEKSTDNFDLIMNIPVKMQ 80 D ++S+ + + N+ S P S++ + S + DLIM+IPVK+ Sbjct: 8 SDDDISADDLWAAAM---NEQAATSAPEQSEAVFKSLDGSGASGSLQDIDLIMDIPVKLT 64 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ Sbjct: 65 VELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND---KYGVRI 121 Query: 141 IEILNA 146 +I+ Sbjct: 122 TDIITP 127 >gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 353 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 3/81 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + +++E +FGVRV +I++ Sbjct: 327 VVVIDE---NFGVRVTDIVSP 344 >gi|302878291|ref|YP_003846855.1| flagellar motor switch protein FliN [Gallionella capsiferriformans ES-2] gi|302581080|gb|ADL55091.1| flagellar motor switch protein FliN [Gallionella capsiferriformans ES-2] Length = 148 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 E + D + + K V + ++ D+I++I Sbjct: 18 EQATAEASTGTDDWAAAMAEQEAPPAAGKAHV------FEKFGAAGSAATPNDLDMILDI 71 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 PV++ + LG M I NL+ L++G V+ L GE +D+ IN IA+GE+ ++ + Sbjct: 72 PVQLTVELGRTKMPIKNLLQLAQGSVVELSGMAGEPLDVMINGFLIAQGEVVVVND---K 128 Query: 136 FGVRVIEILNA 146 G+R+ +I Sbjct: 129 LGIRLTDITTP 139 >gi|300696947|ref|YP_003747608.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum CFBP2957] gi|299073671|emb|CBJ53191.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum CFBP2957] Length = 163 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 56 DDIHSVFKPLVIDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 115 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 116 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 154 >gi|297584048|ref|YP_003699828.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus selenitireducens MLS10] gi|297142505|gb|ADH99262.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus selenitireducens MLS10] Length = 412 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 59/91 (64%), Gaps = 3/91 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S ++ ++ E N DL+M+IP+++ + LG I ++ L +G ++ LDK GE VDI Sbjct: 316 SFETPSLNENEQRNLDLLMDIPLEVTVELGRTKRSIKEILELGQGSIVELDKLAGEPVDI 375 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N + IAKGE+ +++E +FGVRV +I++ Sbjct: 376 LVNQRLIAKGEVVVIDE---NFGVRVTDIVS 403 >gi|295696125|ref|YP_003589363.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus tusciae DSM 2912] gi|295411727|gb|ADG06219.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus tusciae DSM 2912] Length = 395 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 9/119 (7%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 T+ + ++ +++ + + P + TDN DL++++ + + + LG Sbjct: 276 TSQTEAAAGAQTVVKPVEFGPLHSPAAEAPR------TDNLDLLLDVSLTVSVELGRTHQ 329 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + +++ S G V+ LD+ GE VDI +N + IAKGE+ +++E +FGVRV +I++ + Sbjct: 330 SVREVLSWSLGSVVELDRLAGEPVDIYVNQKLIAKGEVVVIDE---NFGVRVTDIVHPR 385 >gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC 27750] gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC 27750] Length = 437 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 15 LEGRSMHIDNPLQDT-NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73 ++G P+Q P N +P ++D N I +K +N +LI Sbjct: 311 MQGMPYGYGMPMQGMMGQPMPMQGYAQPQDVNVAPAAFQPFATDVNPISQK--ENIELIK 368 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P+++ + LG I +++ + G ++ L+K GESVD+ +N + +AKGE+ ++EE Sbjct: 369 DVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEES- 427 Query: 134 THFGVRVIEILN 145 FGVR+ EI+ Sbjct: 428 --FGVRITEIIK 437 >gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685] gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685] Length = 137 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS---SDSNNILEKSTDNFDLIMNIPVKM 79 + P D + +E + ++ S I + + + + DLI++IPVK+ Sbjct: 5 NKPSADAQDDAADLWAEAMGEQQAASQHSGDIFQNLEEGATLGSSAGQDIDLILDIPVKL 64 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + LG M I L+ LS+G V++LD GE +D+ IN IA+GE+ ++ + FGVR Sbjct: 65 TVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDVLINGYLIAQGEVVVVND---KFGVR 121 Query: 140 VIEILNA 146 + +I+ Sbjct: 122 ITDIITP 128 >gi|226941270|ref|YP_002796344.1| FliN [Laribacter hongkongensis HLHK9] gi|226716197|gb|ACO75335.1| FliN [Laribacter hongkongensis HLHK9] Length = 141 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + N D+I++IPV M + LG + I NL+ L++G V+ LD GE +D+ Sbjct: 45 GASAPASTGAPQNLDMILDIPVNMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVL 104 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 105 VNGCLIAQGEVVVVND---KFGIRLTDIITP 132 >gi|224826625|ref|ZP_03699726.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] gi|224601226|gb|EEG07408.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] Length = 143 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS-TDNFDLIMNIPVKMQIILG 84 + D + S + V S N D+I++IPV++ + LG Sbjct: 16 MDDWAAAMAEQESVEAQAEATVQPAHALFQEFGAAAASASVPQNLDMILDIPVQLTVELG 75 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 76 RTRIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDII 132 Query: 145 NA 146 Sbjct: 133 TP 134 >gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 353 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 3/81 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE Sbjct: 267 TPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGE 326 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + +++E +FGVRV +I++ Sbjct: 327 VVVIDE---NFGVRVTDIVSP 344 >gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM 4541] gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM 4541] Length = 138 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 6/122 (4%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNIPVKMQIILG 84 TN + +E L Q+ ++ S + + N + + + DLIM+IPV++ + LG Sbjct: 11 STNHNDEDLWAEALEQQKQAESASAGMQNFENVDGQNPLNQFSDVDLIMDIPVRLSVELG 70 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+R+ +I+ Sbjct: 71 RTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIRITDII 127 Query: 145 NA 146 Sbjct: 128 TP 129 >gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1] gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1] Length = 135 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 10/130 (7%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-----SNNILEKSTDNFDLIMNIP 76 D+ ++S+ +E + ++ V + S P + D + + S + DLIM+IP Sbjct: 2 TDSNKPSDDISADDLWAEAMNEQ--VGSSSAPQTDDVFKSFDSGNVAGSLQDIDLIMDIP 59 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 VK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + + Sbjct: 60 VKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND---KY 116 Query: 137 GVRVIEILNA 146 GVR+ +I+ Sbjct: 117 GVRITDIITP 126 >gi|30248479|ref|NP_840549.1| flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718] gi|30138365|emb|CAD84374.1| possible flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718] Length = 157 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 P D + SP +S L + N++L + ++ D+I++IPV++ + LG Sbjct: 30 PTTDDDNGSPPPSSAHLAGDSLTKPSPVFEQFSRNDVLNDTRNDIDMILDIPVQLTVELG 89 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ L+ GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 90 RTRIAIKNLLQLAQGSVVELNGMAGEPMDVLVNGCLIAQGEVVVVNE---KFGIRLTDII 146 Query: 145 NA 146 Sbjct: 147 TP 148 >gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus silvestris StLB046] Length = 422 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 62/95 (65%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 ++ S +S NI + N +++++IP+++ + LG + ++ LS G +I LDK GE Sbjct: 322 AQFASFESANITQSEARNLNMLLDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGE 381 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 VDI +N++ IAKGE+ +++E +FGVR+ +IL+ Sbjct: 382 PVDILVNSRLIAKGEVVVIDE---NFGVRITDILS 413 >gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42] gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42] Length = 378 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 3/129 (2%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 + P P E + D N + S +N D++M+IP Sbjct: 244 PQPEPAMQPEPQAKPELPKRQGTAKKAAPVQVAPVEFQAFDHNEAAQGSRNNLDMLMDIP 303 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE +F Sbjct: 304 LSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE---NF 360 Query: 137 GVRVIEILN 145 GVRV +IL+ Sbjct: 361 GVRVTDILS 369 >gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium 9_2_54FAA] Length = 145 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 5/118 (4%) Query: 31 VSSPTNNSEMLIQKNDVDNISEPI--SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 + +E + K+ V+N ++ I + D+ + L + + DLI++IPVK+ + LG M Sbjct: 22 AMNEQQTTENTLAKSAVENSADEIFQNLDNPSPLAGNLHDIDLILDIPVKLTVELGRTKM 81 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + FGVR+ +I+ Sbjct: 82 TIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRITDIITP 136 >gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus DSM 13965] gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus DSM 13965] Length = 132 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 DL++++P+++ + LG + L+ ++ G V+ LD+ GE VD+ +N + IA+GE+ + Sbjct: 50 LDLLLDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVV 109 Query: 129 MEEDDTHFGVRVIEILNA 146 ++E +FG+R+ +I++ Sbjct: 110 IDE---NFGIRITDIVSP 124 >gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio acidaminovorans DSM 6589] Length = 375 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 I VD + + S DLI +IPV++ + LG I ++N+S G Sbjct: 263 ASISTAPVDVRPAEFAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTIGEILNMSPG 322 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 V+ L++ GE VD+ +N + IA+GE+ +++E +FGVRV EI++ Sbjct: 323 SVVELNRMAGEPVDVLVNGKLIARGEVVVIDE---NFGVRVTEIVS 365 >gi|300311367|ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] gi|300074152|gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 72/135 (53%), Gaps = 5/135 (3%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 +D+ G +M ++ + + + + + + +S+D +I + ++ D Sbjct: 13 EDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSAD--DIKTNTPNDIDF 70 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + Sbjct: 71 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 130 Query: 132 DDTHFGVRVIEILNA 146 FG+R+ +I+ Sbjct: 131 ---KFGIRLTDIITP 142 >gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032] gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032] Length = 374 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 25/166 (15%) Query: 2 IKKVSKISYIKDNLEG--RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSN 59 I ++ I++ KD + + P+Q+ VS+P ++ + P + Sbjct: 203 IMQLYPITFAKDLIAELTDPAQEEEPVQEAQVSTPEPQQAAPQTQSAPAQQAAPPKRQAK 262 Query: 60 NILEKSTD--------------------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + N D++M+IP+ + + LG + ++ LS G Sbjct: 263 PKPAAPVNVAPVEFEAFSEPQHSTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAG 322 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +I LDK GE VDI +N + +AKGE+ +++E +FGVRV +IL+ Sbjct: 323 SIIELDKLAGEPVDILVNKRIVAKGEVVVIDE---NFGVRVTDILS 365 >gi|299068764|emb|CBJ40004.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum CMR15] Length = 158 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 N + ++ +P+ ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 51 NALSSVFKPLLPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 110 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 111 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 149 >gi|302343740|ref|YP_003808269.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM 2075] gi|301640353|gb|ADK85675.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM 2075] Length = 117 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 +D + L++ N D I++IP+++ + LG M I++L+ L +G V+ L+K GE ++I Sbjct: 21 QADGDGALQRPAQNIDFILDIPLEVTVELGRTSMLINDLLQLGQGSVVELNKLAGEPLEI 80 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + IA+GE+ ++ E FGVR+ +I++ Sbjct: 81 LVNRKLIARGEVVVVNE---KFGVRLTDIVSP 109 >gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli 95/1000] gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli 95/1000] Length = 348 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 6 SKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS 65 ++ ++ L S N + +S NN++ + +S + Sbjct: 204 FELPVLQAILSNASKTTSN--ANKTSASSNNNTQANDNGKQLGVQHAEFNSLMPASDVQG 261 Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T N L+M++ + M + LG M I +++ L +G +I L K GE VD+ +N + IAKGE Sbjct: 262 TGNIGLLMDVTMNMTVELGRATMTIKDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGE 321 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + +++E +FGVRV +I++ Sbjct: 322 VVVIDE---NFGVRVTDIISP 339 >gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] gi|151280202|gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] Length = 139 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSD--SNNILEKSTDNFDLIMNIPVKMQIIL 83 ++D ++ + D S + D ++ + ++ D I++IPV++ + L Sbjct: 11 VEDDWGAAMAEQEQTEAAAIDAKPASATVFKDFAGGDLKTGTHNDIDFILDIPVQLTVEL 70 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I Sbjct: 71 GRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDI 127 Query: 144 LNA 146 + Sbjct: 128 ITP 130 >gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] Length = 129 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 9/128 (7%) Query: 20 MHIDNPLQDTNVSSPTN-NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78 M P + S N E + ++ DN+ N++ +++ DLI++IPVK Sbjct: 1 MSDTTPTSGADKQSIDNLWGEAMSEQQTADNM-----PAKENLVPNFSEDLDLILDIPVK 55 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 M + LG M I L+ LS+G V++L+ GE +DI IN IA+GE+ ++ + FG+ Sbjct: 56 MTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD---KFGI 112 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 113 RITDIITP 120 >gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermincola sp. JR] gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermincola potens JR] Length = 412 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 3/104 (2%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 N V + + K+ DLIM++P+++ + LG I ++NL+ G V+ Sbjct: 304 PANSVPVQPAQFAPLNMGFEPKTPSTIDLIMDVPLQITVELGKAKKTIREILNLAPGSVV 363 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LDK GE VD+ +N + +AKGE+ +++E +FG+R+ +I++ Sbjct: 364 ELDKLAGEPVDLMVNGKLLAKGEVVVIDE---NFGIRITDIVSP 404 >gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146] gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella ictaluri 93-146] Length = 137 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 ++ + S + DLIM+IPVK+ + LG M I L+ LS+G V+ LD GE +D+ I Sbjct: 42 ETPTLSVGSGQDIDLIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLI 101 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N IA+GE+ ++ + FGVR+ +I+ Sbjct: 102 NGYLIAQGEVVVVND---KFGVRITDIITP 128 >gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1] gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1] Length = 136 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83 D N + +E L ++ + S + + + DLIM+IPVK+ + L Sbjct: 8 SDENGAMDDLWAEALNEQKTTGSKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVEL 67 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G M I L+ L++G V++LD GE +DI IN IA+GE+ ++ + +GVR+ +I Sbjct: 68 GRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDI 124 Query: 144 LNA 146 + Sbjct: 125 ITP 127 >gi|260222422|emb|CBA31970.1| Flagellar motor switch protein fliN [Curvibacter putative symbiont of Hydra magnipapillata] Length = 162 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 71/146 (48%), Gaps = 14/146 (9%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSP--TNNSEMLIQKNDVDNISE-----PISSDSNNILEK 64 K E D P + + + +E L+++ D + P+S D+ Sbjct: 10 KTGWENAMASEDKPDEVQGAADDGMADWAEALLEQKSSDGAGDAAPGGPLSGDTPKPFTS 69 Query: 65 STD----NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 D + +++++IPV++ + LG + I +++ L +G V+ LD GE +D+ +N Sbjct: 70 GGDGHVNDINMVLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYL 129 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146 IA+GE+ ++ + FG+R+ +++ Sbjct: 130 IAQGEVVVVND---KFGIRLTDVVTP 152 >gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB] gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB] Length = 135 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 10/130 (7%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-----SNNILEKSTDNFDLIMNIP 76 D+ ++S+ +E + ++ V + S P + D + + S + DLIM+IP Sbjct: 2 TDSNKPSDDISADDLWAEAMNEQ--VGSSSAPQTDDVFKSFDSANVAGSLQDIDLIMDIP 59 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 VK+ + LG M I L+ L++G V++LD GE +DI IN IA+GE+ ++ + + Sbjct: 60 VKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND---KY 116 Query: 137 GVRVIEILNA 146 GVR+ +I+ Sbjct: 117 GVRITDIITP 126 >gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor obsidiansis OB47] gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor obsidiansis OB47] Length = 375 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 +K+ + Q T+ S T + + + S + +N + Sbjct: 239 VKEETLKQPASQPTNKQKTSPQSYTPPPKKEQPQQVYNVSPVQFESFDEEEERRYPENIE 298 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LI+++P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++ Sbjct: 299 LILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVID 358 Query: 131 EDDTHFGVRVIEILNA 146 E +FGVR+ +I+N Sbjct: 359 E---NFGVRITDIVNP 371 >gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM 2876] gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM 2876] Length = 426 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78 P Q + P + +V+ + +N DLIM++P++ Sbjct: 304 PQGYAMPPQGYAMP-PQGYAMPSQNYENVNVQPASFQPFTGGNALPGHENIDLIMDVPLE 362 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG I ++ + G ++ L+K GE +D+ +N + +AKGE+ ++EE FGV Sbjct: 363 VTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEVVVIEES---FGV 419 Query: 139 RVIEILN 145 ++ EI+ Sbjct: 420 KITEIVK 426 >gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4] gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4] Length = 420 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 D + P+ + S M + + + + + N ++ Sbjct: 282 DRSHHVDQSFEQPIHERTREQQHIGSGMHGGREVDVQPAAFSHFEPQPLSNHESKNLSML 341 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++IP+++ + LG I ++ L +G +I LDK GE VDI +N + IAKGE+ ++EE Sbjct: 342 LDIPLQVTVELGRTKRSIKEILELGQGSIIELDKLAGEPVDILVNQKLIAKGEVVVIEES 401 Query: 133 DTHFGVRVIEILNAQ 147 FGVRV +I++ + Sbjct: 402 ---FGVRVTDIVSQE 413 >gi|242281270|ref|YP_002993399.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM 2638] gi|242124164|gb|ACS81860.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM 2638] Length = 229 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 E L + + + + N + S + D I++IP+ + LG M I+ L+ Sbjct: 113 EKEQEFLRTQTRDADFKDLTNEAKNPRHDGSRRDLDFILDIPLDVSAELGRAKMLINELL 172 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L G V+ L K GE ++I +N + +A+GE ++ E FG+R+ +I++ Sbjct: 173 QLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 221 >gi|15615008|ref|NP_243311.1| flagellar motor switch protein [Bacillus halodurans C-125] gi|10175065|dbj|BAB06164.1| flagellar motor switch protein [Bacillus halodurans C-125] Length = 401 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 D + + Q + + +Q N P +D+ N D+ Sbjct: 268 TDPVHMQQPTQGGYRQSMSQPPLQTRRQANVQPAAFTNFEHPELNDTE------AGNLDM 321 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +++IP+++ + LG I ++++ ++G +I LDK GE VDI +N + IAKGE+ +++E Sbjct: 322 LLDIPLQVTVELGRTKRSIKDILSFTQGSIIELDKLAGEPVDILVNQKLIAKGEVVVIDE 381 Query: 132 DDTHFGVRVIEILNAQ 147 +FGVRV EIL+ + Sbjct: 382 ---NFGVRVTEILSQR 394 >gi|291613060|ref|YP_003523217.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus ES-1] gi|291583172|gb|ADE10830.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus ES-1] Length = 135 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEP------ISSDSNNILEKSTDNFDLIMNIPVKMQ 80 + T S + + ++ D +++P + ++ D+I++IPVK+ Sbjct: 4 ETTEQISADDWGAAMAEQTSADAVAQPAVQPHVFEQFGGAGGATAHNDLDMILDIPVKLT 63 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG M I NL+ L++G V+ L GE +D+ IN IA+GE+ ++ + G+R+ Sbjct: 64 VELGHTKMPIKNLLQLAQGSVVELAGLAGEPLDVLINGFLIAQGEVVVVND---KLGIRL 120 Query: 141 IEILNA 146 +I+ Sbjct: 121 TDIITP 126 >gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM 30120] gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM 30120] Length = 138 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 8/123 (6%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKSTDNFDLIMNIPVKMQIIL 83 TN + +E L Q+ ++ S + + D N L + + + D+IM+IPV++ + L Sbjct: 11 STNHNEEDLWAEALEQQKQAESASAGMQNFDSLDGQNPLTQLS-DVDMIMDIPVRLSVEL 69 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + ++G+R+ +I Sbjct: 70 GRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---NYGIRITDI 126 Query: 144 LNA 146 + Sbjct: 127 ITP 129 >gi|229544405|ref|ZP_04433463.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus coagulans 36D1] gi|229324890|gb|EEN90567.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus coagulans 36D1] Length = 368 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 4/126 (3%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI-SSDSNNILEKSTDNFDLIMNIPVKMQI 81 D ++ P ++ ++ N+ + +S T N D++++IP+++ + Sbjct: 239 DQNMRGHAAEKPAEPAQNAAKQEMYQNVQPAVFTSFEETAPRVETKNLDMLLDIPLEVTV 298 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 LG + ++ + G ++ LDK GE VDI IN+Q IA GE+ +++E +FGVRV Sbjct: 299 ELGRTSKTVREILEMGAGSIVELDKLAGEPVDILINHQLIAIGEVVVIDE---NFGVRVT 355 Query: 142 EILNAQ 147 +I++ + Sbjct: 356 DIVSQK 361 >gi|253998476|ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4] gi|313200551|ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688] gi|253985155|gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4] gi|312439867|gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688] Length = 145 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 D + + + + + ++ ++ D I++IPV++ + LG Sbjct: 20 DDWGAAMAEQQQAEDSPLQAKPAQATVFTELTGKKMSETQNDIDFILDIPVQLTVELGRT 79 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 80 KIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 136 >gi|161523222|ref|YP_001578234.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC 17616] gi|189348921|ref|YP_001944549.1| flagellar motor switch protein [Burkholderia multivorans ATCC 17616] gi|221214538|ref|ZP_03587508.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1] gi|160340651|gb|ABX13737.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC 17616] gi|189332943|dbj|BAG42013.1| flagellar motor switch protein [Burkholderia multivorans ATCC 17616] gi|221165428|gb|EED97904.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1] Length = 159 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 63/112 (56%), Gaps = 6/112 (5%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 N + + + +P+S + + + ++ ++I++IPVKM + LG + I NL+ Sbjct: 45 EQNHQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGRTKIAIRNLL 101 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 102 QLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 150 >gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor owensensis OL] gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor owensensis OL] Length = 376 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 +K+ + + Q T S T + + + S K +N + Sbjct: 240 VKEEALKQPVSQPTNKQKTLPQSHTQPPKKEQPQKVYNVSPVQFESFDEEEERKYPENIE 299 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LI+++P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++ Sbjct: 300 LILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVID 359 Query: 131 EDDTHFGVRVIEILNA 146 E +FGVR+ +I+N Sbjct: 360 E---NFGVRITDIVNP 372 >gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8] gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8] Length = 179 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ Sbjct: 93 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 152 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++E+ +G+R+ +I+ Sbjct: 153 VVED---KYGIRLTDIITP 168 >gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103] gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103] gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355] Length = 137 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%) Query: 27 QDTNVSSPTNNSEMLIQK----NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D +S+ +E + ++ + S + S + DLIM+IPVK+ + Sbjct: 8 SDDTISADDLWAEAMNEQVGSATTASQSDDVFKSFETSNASGSLQDIDLIMDIPVKLTVE 67 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG M I L+ L++G V++LD GE +DI IN IA+GE+ ++ + +GVR+ + Sbjct: 68 LGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND---KYGVRITD 124 Query: 143 ILNA 146 I+ Sbjct: 125 IITP 128 >gi|221201777|ref|ZP_03574814.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2M] gi|221207718|ref|ZP_03580726.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2] gi|221172564|gb|EEE05003.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2] gi|221178197|gb|EEE10607.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2M] Length = 159 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 63/112 (56%), Gaps = 6/112 (5%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 N + + + +P+S + + + ++ ++I++IPVKM + LG + I NL+ Sbjct: 45 EQNQQPVQAGATGAGVFQPLSKAAAS---STHNDIEMILDIPVKMTVELGRTKIAIRNLL 101 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 102 QLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 150 >gi|83747641|ref|ZP_00944677.1| FliN [Ralstonia solanacearum UW551] gi|207739722|ref|YP_002258115.1| flagellar motor switch protein flin [Ralstonia solanacearum IPO1609] gi|83725693|gb|EAP72835.1| FliN [Ralstonia solanacearum UW551] gi|206593104|emb|CAQ60010.1| flagellar motor switch protein flin [Ralstonia solanacearum IPO1609] Length = 154 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 47 DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 145 >gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 356 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+M++ + + + LG M I +++ L +G +I LDK GE VD+ +N + IAKGE+ Sbjct: 273 NLNLLMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVV 332 Query: 128 IMEEDDTHFGVRVIEILNA 146 +++E +FGVRV +I++ Sbjct: 333 VIDE---NFGVRVTDIVSP 348 >gi|292493589|ref|YP_003529028.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4] gi|291582184|gb|ADE16641.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4] Length = 152 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 9/125 (7%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDS------NNILEKSTDNFDLIMNIPVKMQI 81 + S + + K ++ +EP + + + N DLI++IPV M + Sbjct: 23 EQAGDSGSRQGQTAASKAQAESSAEPYAPPTLEELATDPTAAAKDINLDLILDIPVTMAM 82 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +G + I +L+ L++G V+ L++ GE +D+ +N IA GE+ ++ E FG+R+ Sbjct: 83 EIGRTRISIRDLLKLNRGSVVELERLAGEPLDVLVNGCLIAHGEVVVVNE---KFGIRLT 139 Query: 142 EILNA 146 ++++ Sbjct: 140 DVIST 144 >gi|207728360|ref|YP_002256754.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2] gi|206591606|emb|CAQ57218.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2] Length = 154 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +D+ ++ +P+ D ++ D+I++IPV++ + LG + I NL+ L++G V+ L Sbjct: 47 DDIHSVFKPLVVDDKKPAPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVEL 106 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 107 DALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 145 >gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Thermoanaerobacter tengcongensis MB4] Length = 366 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 14/147 (9%) Query: 11 IKDNLEGRSMHIDNPLQ-------DTNVSSPTNNSEMLIQKNDVDNIS----EPISSDSN 59 +K L+ + P + S SE I+K + N+S + + Sbjct: 215 VKSVLQQATTSTSPPAEVKEMKKESKGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQ 274 Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + + N DLI+++P+ + + LG I +++ L++G +I LDK GE VDI N + Sbjct: 275 QEAKGESKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGK 334 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146 IAKGE+ +++E +FGVR+ +I++ Sbjct: 335 YIAKGEVVVIDE---NFGVRITDIVHP 358 >gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC 43970] gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC 43970] Length = 129 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 3/99 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + ++ S +N++ +++ DLI++IPVKM + LG M I L+ LS+G V++L+ Sbjct: 25 EQLAADSSPPKDNLVPNFSEDLDLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGL 84 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE +DI IN IA+GE+ ++ + FG+R+ +I+ Sbjct: 85 AGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIITP 120 >gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Coprothermobacter proteolyticus DSM 5265] gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Coprothermobacter proteolyticus DSM 5265] Length = 287 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 4/120 (3%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D S S ++Q+NDV++++ P +I + N +L++++ V + + LG Sbjct: 165 DAVSSEVEKTSASVMQENDVEDVTFPQLRPEGDI-QPLPRNLELLLDVKVNVSVELGRSR 223 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + I +L++L G +ITLDK GE VDI +N + IAKGE+ +++E FGVR+++I+ + Sbjct: 224 VSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDES---FGVRILDIIAPK 280 >gi|33601557|ref|NP_889117.1| flagellar motor switch protein [Bordetella bronchiseptica RB50] gi|33575993|emb|CAE33073.1| flagellar motor switch protein [Bordetella bronchiseptica RB50] Length = 172 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 QD + + V ++ + + DLIM++PV+M + LG Sbjct: 45 QDDWADALAEQNAAPAAAPAVQPAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVELGRT 104 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + I NL+ L +G V+ LD GE +DI +N IA+GE+ ++++ +G+R+ +I+ Sbjct: 105 RLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDD---KYGIRLTDIITP 161 >gi|323490152|ref|ZP_08095372.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2] gi|323396200|gb|EGA89026.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2] Length = 351 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 3/139 (2%) Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67 +S + + + + S+ SE + + S D+ ++ T+ Sbjct: 208 VSMLNEQFDEEEQGTKEAGEMPKQSASGFQSEEQSPEAPTVQNVQFSSFDNTDVASSETN 267 Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N +L+++IP+++ + LG + +++ +S+G +I LDK GE VDI INN+ IA GE+ Sbjct: 268 NLNLLLDIPLQVTVELGRTKRMVKDILEISQGSIIELDKLAGEPVDILINNKLIAVGEVV 327 Query: 128 IMEEDDTHFGVRVIEILNA 146 +++E +FGVRV ++L+ Sbjct: 328 VIDE---NFGVRVTDVLST 343 >gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1] gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2] gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44] gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1] gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2] gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44] Length = 144 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 23 DNPLQDTNVSSPTNNS-EMLIQKNDVDNISEPISSDS-NNILEKSTDNFDLIMNIPVKMQ 80 D+P + + ++ D+ + P++ D+ + + + +++++IPV++ Sbjct: 12 DDPFSGWAEALEEQRQHDQAVEGPDLSDQGGPLAGDAARSYGDVPVHDINMVLDIPVQLS 71 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ Sbjct: 72 VELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRL 128 Query: 141 IEILNA 146 +++ Sbjct: 129 TDVVTP 134 >gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM 12260] gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM 12260] Length = 374 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 3/106 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 I VD + N DLI++IPV++ + LG I ++ + G Sbjct: 262 AAISTAPVDARPAEFLPLHSGDGAALPGNIDLIVDIPVRITVELGRARKTIGEVLGMGPG 321 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 V+ L++ GE VD+ +N + +A+GE+ +++E FG+RV EI++ Sbjct: 322 SVVELNRMAGEPVDVLVNGKLMARGEVVVIDES---FGIRVTEIVS 364 >gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens DSM 7] gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens DSM 7] gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208] gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens LL3] Length = 377 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 29/169 (17%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDV--DNISEPISSDSN 59 I ++ I++ KD + M D P D VS P E + + + ++P Sbjct: 204 IMQLYPITFAKDLI-AELMDTDQPEADETVSEPRETYETPQPEPAIQQEPQAKPELPKRQ 262 Query: 60 NILEK-----------------------STDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 +K S +N D++M+IP+ + + LG + ++ L Sbjct: 263 GTAKKAAPVQVAPVEFQAFDQNAADGHGSRNNLDMLMDIPLSVTVELGRTKRSVKEILEL 322 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 S G +I LDK GE VDI +N + +AKGE+ ++EE +FGVRV +IL+ Sbjct: 323 SAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE---NFGVRVTDILS 368 >gi|317151985|ref|YP_004120033.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis Aspo-2] gi|316942236|gb|ADU61287.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis Aspo-2] Length = 174 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 3/111 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + + D + + S + + D I++IP+++ LG + I+ L+ Sbjct: 59 EKEQAFLSTQTHDYEFKDMGSAAKGASSSGKRDLDFILDIPLEVSAELGRTKLLINELLQ 118 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L +G V+ L+K GE ++I +N + +A+GE ++ E FG+R+ +I++ Sbjct: 119 LGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 166 >gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermosediminibacter oceani DSM 16646] gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermosediminibacter oceani DSM 16646] Length = 362 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNN-SEMLIQKNDVDNISEPISSDSN 59 +++++ IS +S D + + P +E +K V + ++ Sbjct: 213 LVRELMSISKGIPFETSKSDDTDEHILENAPPEPQKPFNEKKAEKVSVKPVELEDFGEAE 272 Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 +KS+ DLIM++P+++ + LG +I ++ + G +I L+K GE VDI +N + Sbjct: 273 TSGKKSS--LDLIMDVPLEISVELGRTVKKIKEILEIGPGSIIELEKLAGEPVDILVNGK 330 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146 IA+GE+ +++E FGVR+ EILN+ Sbjct: 331 LIARGEVVVIDES---FGVRITEILNS 354 >gi|187478202|ref|YP_786226.1| flagellar motor switch protein [Bordetella avium 197N] gi|115422788|emb|CAJ49316.1| flagellar motor switch protein [Bordetella avium 197N] Length = 172 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 3/100 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V + ++ + + + DL+M++PV++ + LG + I NL+ L +G V+ LD Sbjct: 65 VQSAAQTVFKPLTGKDNAAGADIDLVMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDG 124 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE +DI +N IA+GE+ ++EE +G+R+ +I+ Sbjct: 125 LAGEPMDIFVNGYLIAQGEVVVVEE---KYGIRLTDIITP 161 >gi|119899014|ref|YP_934227.1| flagellar motor switch FliN [Azoarcus sp. BH72] gi|119671427|emb|CAL95340.1| flagellar motor switch FliN [Azoarcus sp. BH72] Length = 159 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 5/145 (3%) Query: 4 KVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD--SNNI 61 ++S+ + E S + V++ + + + I D S+ Sbjct: 9 QISEDDWAAAMQEQASAEAGMDAESARVAADLAAAAAFDESPYQAKPASQIFEDFGSSGA 68 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + ++FD+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N I Sbjct: 69 KPGALNDFDMILDIPVQLTVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLI 128 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 A+GE+ ++ + FG+R+ +I+ Sbjct: 129 AQGEVVVVND---KFGIRLTDIITP 150 >gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans] gi|55977143|gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans] gi|133738988|emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans] Length = 141 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++ + ++ D I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ Sbjct: 44 DFSGGDLKTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDV 103 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 104 LVNGCLIAQGEVVVVND---KFGIRLTDIITP 132 >gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427] gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium lentocellum DSM 5427] Length = 403 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D N T + + + DVD + S N +N DL+M++ +++ + LG Sbjct: 284 DPNYYGETYHKSVNNIRADVDVQTPQFQSFDNRPKVYPKENMDLLMDVSLEVSVELGRTS 343 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +I ++ G +I L++ VGE VD+ +N + +A GE+ +++E +FG+R+ +I+N + Sbjct: 344 RKIKEILEFGPGSIIELNRLVGEPVDVLVNGKFVATGEVVVIDE---NFGIRITDIINPE 400 >gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y4.1MC1] gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y4.1MC1] Length = 395 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83 P + + + + + + + N L++++P+++ + L Sbjct: 268 EPSKTAAHETANHFGANAKSGERQIQSVDFAEFEPSPSADTEVKNLSLLLDVPLQVTVEL 327 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G + ++ LS G +I LDK GE VDI +NN+ IAKGE+ +++E +FGVRV +I Sbjct: 328 GRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE---NFGVRVTDI 384 Query: 144 LN 145 ++ Sbjct: 385 IS 386 >gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653] gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653] Length = 366 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 14/147 (9%) Query: 11 IKDNLEGRSMHIDNPLQ-------DTNVSSPTNNSEMLIQKNDVDNIS----EPISSDSN 59 +K L+ + P + S SE I+K + N+S + + Sbjct: 215 VKSVLQQTTTSTSPPAEVKEMKKESKGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQ 274 Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + + N DLI+++P+ + + LG I +++ L++G +I LDK GE VDI N + Sbjct: 275 QEAKGESKNLDLILDVPLTITVELGKTKKLIKDILELTEGSIIELDKLAGEPVDILANGK 334 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146 IAKGE+ +++E +FGVR+ +I++ Sbjct: 335 YIAKGEVVVIDE---NFGVRITDIVHP 358 >gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602] gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602] Length = 138 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 + D + DN + D + K D + + + S + D Sbjct: 1 MSDTNKPSDAGSDN-VDDLWADAFNEQQSAGGAKASTDGVFAALGAQDGT---GSLQDID 56 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +I++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ Sbjct: 57 MILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVA 116 Query: 131 EDDTHFGVRVIEILNA 146 + +GVR+ +I+ Sbjct: 117 D---KYGVRITDIITP 129 >gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942] gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942] Length = 379 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 4/130 (3%) Query: 17 GRSMHIDNP-LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 + P L+ +P + E + D N + +N D++M+I Sbjct: 244 PEEAVMPEPRLESQPQPTPKRQGKPKKAAPVQVAPVEFSAFDPNEAPQAHLNNLDMLMDI 303 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE + Sbjct: 304 PLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE---N 360 Query: 136 FGVRVIEILN 145 FGVRV +IL+ Sbjct: 361 FGVRVTDILS 370 >gi|293605020|ref|ZP_06687415.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii ATCC 43553] gi|292816589|gb|EFF75675.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii ATCC 43553] Length = 101 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 S + DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N Sbjct: 6 AGATAGSGTDIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNG 65 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 IA+GE+ ++E+ +G+R+ +I+ Sbjct: 66 YLIAQGEVVVVED---KYGIRLTDIITP 90 >gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus thermoglucosidasius C56-YS93] Length = 395 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNI 61 V + + + ++ ++ + + ++ + + + + + + Sbjct: 246 VQEAAVSQPSVTAEAIGAQPSYEPSKTAAHETANHFGANAKSGERQIQSVDFAEFEPSPS 305 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + N L++++P+++ + LG + ++ LS G +I LDK GE VDI +NN+ I Sbjct: 306 ADTEVKNLSLLLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLI 365 Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145 AKGE+ +++E +FGVRV +I++ Sbjct: 366 AKGEVVVIDE---NFGVRVTDIIS 386 >gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus cellulosilyticus DSM 2522] gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus cellulosilyticus DSM 2522] Length = 398 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 3 KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNIL 62 + V++ ++ + N + + + +N L ++ + + ++ + Sbjct: 251 ETVTQQAFPQTNEQPQMDATNQHQSARQEPQFVSNGSRLPDRSAEVQPAAFSNFETPQLG 310 Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 N D++++IP+++ + LG I +++ L++G +I LDK GE VDI +N + IA Sbjct: 311 NNEAKNLDMLLDIPLEVTVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIA 370 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 KGE+ +++E +FGVRV +I++ + Sbjct: 371 KGEVVVIDE---NFGVRVTDIVSKR 392 >gi|34498584|ref|NP_902799.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] gi|34104438|gb|AAQ60796.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 147 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 7/139 (5%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP----ISSDSNNILEKSTD 67 ++ L+G + + + + ++ E + ++ V+ + P + Sbjct: 3 EEELQGGAAGAEEEVSMDDWAAAMAEQETVETQHAVEAEAVPAQGLFQEIGAGAVAGGPP 62 Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I++IPV++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 63 NLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVV 122 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + FG+R+ +I+ Sbjct: 123 VVND---KFGIRLTDIITP 138 >gi|170694406|ref|ZP_02885560.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M] gi|170140829|gb|EDT09003.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M] Length = 155 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D + N + +P+S + + ++ D+I++IPV+M + LG Sbjct: 34 DWASALAEQNDNTSEISATTAGVFQPLSKVAPTT---TRNDIDMILDIPVQMTVELGRTK 90 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 91 LAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 146 >gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio peptidovorans DSM 11002] Length = 384 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS-TDNFDLIMNI 75 R P + + VD S ++ S N LI +I Sbjct: 248 QRPAQQQAPRPSGGGGAGMSQPPSGEASPPVDVRPAQFSPLQPAAVDSSLPSNIGLIADI 307 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 PV++ + LG + +++ + G VI LDK GE VD+ +N + IAKGE+ +++E + Sbjct: 308 PVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDE---N 364 Query: 136 FGVRVIEILN 145 FGVRV EILN Sbjct: 365 FGVRVTEILN 374 >gi|283853449|ref|ZP_06370693.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B] gi|283571169|gb|EFC19185.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B] Length = 190 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + L +++ E + D I++IP+ + LG + I+ L+ Sbjct: 74 ERDQDALSRQSASAQFKNLTQEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELL 133 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L +G VI L+K GE ++I +N + +A+GE ++ E FGVR+ +I++ Sbjct: 134 QLGQGSVIELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGVRLTDIISP 182 >gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661] gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661] Length = 133 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 69/127 (54%), Gaps = 3/127 (2%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 M N + ++S+ ++ + ++ + S +N + S + DLIM+IPVK+ Sbjct: 1 MSDTNKPSEDDISADDLWADAMNEQASTPSSEGVFKSLESNDITGSLQDIDLIMDIPVKL 60 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + LG M I L+ L++G V++L+ GE +DI IN IA+GE+ ++ + +GVR Sbjct: 61 TVELGRTKMTIKELLRLTQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVAD---KYGVR 117 Query: 140 VIEILNA 146 + +I+ Sbjct: 118 ITDIITP 124 >gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 375 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMN 74 + + P+ Q V N+S P+ +S + E+ +N +LI++ Sbjct: 244 PKQPSSQSTKTQKAAPQPSYTPPKKEQPQQVYNVS-PVQFESFDEEEERRYPENIELILD 302 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++E Sbjct: 303 VPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE--- 359 Query: 135 HFGVRVIEILNA 146 +FGVR+ +I+N Sbjct: 360 NFGVRITDIVNP 371 >gi|323527700|ref|YP_004229853.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001] gi|323384702|gb|ADX56793.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001] Length = 155 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D + N + +P+S + + ++ D+I++IPV+M + LG Sbjct: 34 DWASALAEQNDNSSEVSASTAGVFQPLSKVAPT---STRNDIDMILDIPVQMTVELGRTK 90 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 91 LAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 146 >gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans BC] gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans BC] Length = 151 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 5/132 (3%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEML--IQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74 G D+P + S I +S + + + +++++ Sbjct: 13 GDGAAADDPFAGWAEALEEQKSADARTIDAEQGGPLSGEPARAFAGGGDAPAQDINMVLD 72 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + Sbjct: 73 IPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND--- 129 Query: 135 HFGVRVIEILNA 146 FG+R+ +++ Sbjct: 130 KFGIRLTDVVTP 141 >gi|226313057|ref|YP_002772951.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC 100599] gi|226096005|dbj|BAH44447.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC 100599] Length = 455 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 4/142 (2%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILE 63 + +Y + + Q ++ PT N + + + + Sbjct: 308 MYPDAYGQQMMPPGYAPYPGMYQQPPMAPPTPQHFGGPAANQANVVPAQFAPLGGAPMYT 367 Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 N +L+ +IP+++ + LG I +++LS G +I LDK GE VDI +NN+ IAK Sbjct: 368 GDIQNLNLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAK 427 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ +++E +FGVRV +I++ Sbjct: 428 GEVVVIDE---NFGVRVTDIIS 446 >gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7] gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7] Length = 188 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ++ + D+IM+IPV++ + LG + I N++ L +G V+ LD GE +DI +N IA+ Sbjct: 98 ENNSDIDMIMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVNGYLIAQ 157 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ +++E +G+RV +I+ Sbjct: 158 GEVVVVDE---KYGIRVTDIITP 177 >gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 156 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 66/125 (52%), Gaps = 5/125 (4%) Query: 24 NPLQDTNVSSPTNNS-EMLIQKNDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQI 81 P + + + + + +I + +D S + + D N D+I+++PV + + Sbjct: 27 TPARRASPTRRSLPGLQQMINSDTLDASPATFDSLQAEQDQNAADLNLDVILDVPVTLSL 86 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ ++ + FG+R+ Sbjct: 87 EVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND---RFGIRLT 143 Query: 142 EILNA 146 ++++ Sbjct: 144 DVVSP 148 >gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] gi|973195|gb|AAB00544.1| FliY [Treponema pallidum] gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 348 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 Q N N +M I S N N LIM++ +++ + LG Sbjct: 224 AQVGNSQMGGVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFMEVTVELGR 283 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M I +++ + +G +I LDK GE VDI +N++ IAKGE+ +++E +FGVRV EIL+ Sbjct: 284 TRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDE---NFGVRVTEILS 340 Query: 146 A 146 Sbjct: 341 P 341 >gi|187925748|ref|YP_001897390.1| flagellar motor switch protein FliN [Burkholderia phytofirmans PsJN] gi|187716942|gb|ACD18166.1| flagellar motor switch protein FliN [Burkholderia phytofirmans PsJN] Length = 154 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 6/117 (5%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 S+ ++ + +P+S + ++ D+I++IPV+M + LG + Sbjct: 35 WASALAEQNDNSEVSATTAGVFQPLSKVEPTT---TRNDIDMILDIPVQMTVELGRTKIA 91 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 92 IRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 145 >gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans C54] Length = 100 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DLIM++PV++ + LG + I NL+ L +G V+ LD GE +DI +N IA+GE+ Sbjct: 14 DIDLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVV 73 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++E+ +G+R+ +I+ Sbjct: 74 VVED---KYGIRLTDIITP 89 >gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8] Length = 154 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 3/96 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + E +D +L+++IP+K+ + LG M + ++ + G +I LDK GE Sbjct: 54 AELKPSETRKTEVPSDKLELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 113 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VDI +N + IA+GE+ +++E +FGVR+ EI++ + Sbjct: 114 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 146 >gi|220934502|ref|YP_002513401.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7] gi|219995812|gb|ACL72414.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7] Length = 154 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 7/123 (5%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEP----ISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83 +T ++ K + D + + ++S+S + N D++++IPV + + + Sbjct: 27 ETEAKPEDKPAKGKGAKAESDAVQKASFDSLASESRAPATQEDVNLDVVLDIPVTISMEI 86 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G M I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++ Sbjct: 87 GRTRMPIRNLLQLNQGSVVELDRLAGEPLDVYVNGTLIAHGEVVVVNE---KFGIRLTDV 143 Query: 144 LNA 146 ++ Sbjct: 144 ISP 146 >gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118] gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118] Length = 139 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 73/134 (54%), Gaps = 13/134 (9%) Query: 20 MHIDN-PLQDTNVSSPTNNSEMLIQKNDVDNISEP------ISSDSNNILEKSTDNFDLI 72 M ID P +D ++ + +E L+++ + +EP +S S + + + + + Sbjct: 1 MAIDEKPAEDDGMA---DWAEALLEQKSSEPTAEPGGVLAGDTSHSFSSSDAPISDINRV 57 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++IPV++ + LG + I +++ L +G V+ LD GE +D+ +N IA+GE+ ++ + Sbjct: 58 LDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND- 116 Query: 133 DTHFGVRVIEILNA 146 FG+R+ +++ Sbjct: 117 --KFGIRLTDVVTP 128 >gi|303246796|ref|ZP_07333073.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans JJ] gi|302491813|gb|EFL51693.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans JJ] Length = 202 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + E L +++ E + D I++IP+ + LG + I+ L+ Sbjct: 86 ERDQETLSRQSAAAQFKNLTQEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELL 145 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L +G VI L+K GE ++I +N + +A+GE ++ E FGVR+ +I++ Sbjct: 146 QLGQGSVIELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGVRLTDIISP 194 >gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 375 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%) Query: 3 KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNI 61 +K S++++ +++ + + ++ N SP QK +V + + DS++ Sbjct: 226 EKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSK 285 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + I Sbjct: 286 GKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYI 345 Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144 AKGE+ +++E +FGVR+I+I+ Sbjct: 346 AKGEVVVIDE---NFGVRIIDIV 365 >gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] Length = 360 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 +++ + +S + T N L+M++ + M + LG M I +++ L Sbjct: 245 DNQAFDSGPQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIRDILGL 304 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G +I L K GE VD+ +N + IAKGE+ +++E +FGVRV +I+N Sbjct: 305 GEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE---NFGVRVTDIINP 351 >gi|71906404|ref|YP_283991.1| Type III secretion system outer membrane O protein [Dechloromonas aromatica RCB] gi|71846025|gb|AAZ45521.1| Type III secretion system outer membrane O protein [Dechloromonas aromatica RCB] Length = 147 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 11/132 (8%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI--------SSDSNNILEKSTDNFDLIMN 74 P++D S + + + ++ D + S N + D+I++ Sbjct: 10 STPVEDDGQISEDDWAAAMSEQAISDAPAAMAAQPADIFPSFGGNAGNAGMMNELDMILD 69 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N IA+GE+ ++ + Sbjct: 70 IPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVVND--- 126 Query: 135 HFGVRVIEILNA 146 FG+R+ +I+ Sbjct: 127 KFGIRLTDIITP 138 >gi|300693351|ref|YP_003749324.1| flagellar motor switching and energizing component. flin/mopa/spao family [Ralstonia solanacearum PSI07] gi|299075388|emb|CBJ34683.1| flagellar motor switching and energizing component. fliN/mopA/spaO family [Ralstonia solanacearum PSI07] Length = 169 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 4/103 (3%) Query: 45 NDVDNISEPIS-SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 ND++++ +P+ DS ++ D+I++IPV++ + LG + I NL+ L++G V+ Sbjct: 61 NDINSVFKPLVVDDSKKPSPTQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVE 120 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LD GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 121 LDALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 160 >gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 375 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%) Query: 3 KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNI 61 +K S++++ +++ + + ++ N SP QK +V + + DS++ Sbjct: 226 EKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSK 285 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + I Sbjct: 286 GKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYI 345 Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144 AKGE+ +++E +FGVR+I+I+ Sbjct: 346 AKGEVVVIDE---NFGVRIIDIV 365 >gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1] gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1] Length = 137 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 + E ++++ S+ + + T N D+I++IPV + + +GS + I N Sbjct: 20 EEQADDEAKAASPELEDFSQQARAAAIG-GGPGTPNLDVILDIPVTLSMEVGSTNISIRN 78 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L+ L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Q Sbjct: 79 LLQLNQGSVIELDRLAGEPLDVMVNGTLIAHGEVVVVNE---KFGIRLTDVISPQ 130 >gi|85060032|ref|YP_455734.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] gi|84780552|dbj|BAE75329.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] Length = 132 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 7/124 (5%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + D + + D I P++ N S + DLIM+IPVKM + Sbjct: 7 PSAADDLWAEALVQQGGDRERAVSTDGIFSPLAGKGGN---GSLQDIDLIMDIPVKMTVE 63 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG M I L+ L++G V+ LD GE +DI IN IA+GE+ + + +GVR+ Sbjct: 64 LGRTKMTIKELLRLAQGSVVALDGLAGEPLDILINGYLIAQGEVVVAD----KYGVRITS 119 Query: 143 ILNA 146 I+ Sbjct: 120 IITP 123 >gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM 12563] gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM 12563] Length = 359 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 +++ + +S + T N L+M++ + M + LG M I +++ L Sbjct: 244 DNQAFDSGPQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIRDILGL 303 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G +I L K GE VD+ +N + IAKGE+ +++E +FGVRV +I+N Sbjct: 304 GEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE---NFGVRVTDIINP 350 >gi|256830497|ref|YP_003159225.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM 4028] gi|256579673|gb|ACU90809.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM 4028] Length = 188 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 13/141 (9%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD----------SNNILEKS 65 E S D L D + + E IQ S D E Sbjct: 43 EQDSGGSDQALADEWAKALADEEETKIQHEKKQKQLAAQSKDFEYKDLTAEAKAPRPEAL 102 Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + D I++IP+++ LGS + I+ L+ L +G VI L+K GE ++I +N + +A+GE Sbjct: 103 RKDLDFILDIPLEVSAQLGSTKLLINELLQLGQGSVIELNKLAGEPLEILVNGKLVARGE 162 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 ++ E FGVR+ +I++ Sbjct: 163 AVVINE---KFGVRLTDIISP 180 >gi|209522294|ref|ZP_03270921.1| flagellar motor switch protein FliN [Burkholderia sp. H160] gi|209497270|gb|EDZ97498.1| flagellar motor switch protein FliN [Burkholderia sp. H160] Length = 153 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D D S+ + + +P+S + ++ D+I++IPV+M + Sbjct: 27 DEAALDDWASALAEQNGNDEINPAAGGVFQPLSKVEPT---STHNDIDMILDIPVQMTVE 83 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ + Sbjct: 84 LGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTD 140 Query: 143 ILNA 146 I+ Sbjct: 141 IITP 144 >gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus JW 200] gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus JW 200] Length = 375 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%) Query: 3 KKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNI 61 +K S++++ +++ + + ++ N SP QK +V + + DS++ Sbjct: 226 EKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSK 285 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +K +N DLI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + I Sbjct: 286 GKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYI 345 Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144 AKGE+ +++E +FGVR+I+I+ Sbjct: 346 AKGEVVVIDE---NFGVRIIDIV 365 >gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319] gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319] Length = 385 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 21/164 (12%) Query: 2 IKKVSKISYIKDNLEG----------RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS 51 I ++ IS+ K +E S+ ++ L + P + + + Sbjct: 218 IMQLLSISFAKSLVEELLVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPVH 277 Query: 52 EPISSDSNNILE--------KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 P+ + E ++ N D++++IP+++ + LG + ++ LS G +I Sbjct: 278 VPVDVQPASFSEFEHMSSPQGNSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIE 337 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 LDK GE VDI IN++ IAKGE+ +++E +FGVRV +I++ + Sbjct: 338 LDKLAGEPVDILINSKLIAKGEVVVIDE---NFGVRVTDIISQK 378 >gi|239909253|ref|YP_002955995.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1] gi|239799120|dbj|BAH78109.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1] Length = 186 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + E L +++ + + + D I++IP+ + LG + I+ L+ Sbjct: 70 ERDQEALSRQSAKAKFKDMTPEAKAQRPDNIRRDLDFILDIPLDVSAELGRTKLLINELL 129 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L +G VI L+K GE ++I +N + +A+GE ++ E FGVR+ +I++ Sbjct: 130 QLGQGSVIELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGVRLTDIISP 178 >gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga sp. RQ2] gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga sp. RQ2] Length = 346 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + E +D +L+++IP+++ + LG M + ++ + G +I LDK GE Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VDI +N + IA+GE+ +++E +FGVR+ EI++ + Sbjct: 306 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 338 >gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor lactoaceticus 6A] Length = 375 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 6/132 (4%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMN 74 + + P Q V N+S P+ +S + E+ +N +LI++ Sbjct: 244 PKQPSSQSTKTQKAAPQPFYTPPKKEQPQQVYNVS-PVQFESFDEEEERRYPENIELILD 302 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ +++E Sbjct: 303 VPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE--- 359 Query: 135 HFGVRVIEILNA 146 +FGVR+ +I+N Sbjct: 360 NFGVRITDIVNP 371 >gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 422 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 4/136 (2%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 ++ + + Q T E K D + + + N + Sbjct: 283 GPESGQSPEREVSTQGQPTGQGEQQMKQEQ-QPKKDYQPVEFSPLEGHQSAAKGENSNIE 341 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LIM++P+++ + LG +I ++ L G +I LDK GE VDI +N + IAKGE+ +++ Sbjct: 342 LIMDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVID 401 Query: 131 EDDTHFGVRVIEILNA 146 E +FG+R+ EI++ Sbjct: 402 E---NFGIRITEIISP 414 >gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16] gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16] Length = 395 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 61/91 (67%), Gaps = 3/91 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 ++ E N D++++IP+++++ LG I ++++++G +I LDK GE VD+ I Sbjct: 301 ETTKPDEAEMQNLDMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLAGEPVDVLI 360 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 N++ IAKGE+ +++E +FGVR+ +I++ + Sbjct: 361 NDKLIAKGEVVVIDE---NFGVRITDIVSKK 388 >gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582] gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582] Length = 138 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 7/126 (5%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK----STDNFDLIMNIPVKMQ 80 P + S ++ ++ + S + + S + DLI++IPVK+ Sbjct: 7 PSGEGKESVDDLWADAFNEQQSSEKTSAATEGVFKTLEAQDAIGSLQDIDLILDIPVKLT 66 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + FGVR+ Sbjct: 67 VELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRI 123 Query: 141 IEILNA 146 +I+ Sbjct: 124 TDIITP 129 >gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis 11-1] gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis 11-1] Length = 109 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 N+ ++ + S L + N D+I+++PV + + +G M I NL+ L++G VI L Sbjct: 3 NESAAAAQFDALQSEPGLAGNDLNLDVILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIEL 62 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ GE +D+ +N IA GE+ ++ + FGVR+ ++++ Sbjct: 63 ERGAGEPLDVYVNGTLIAHGEVVVIND---RFGVRLTDVVSP 101 >gi|167834867|ref|ZP_02461750.1| flagellar motor switch protein FliN [Burkholderia thailandensis MSMB43] Length = 130 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 6/112 (5%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 N + + + P+S + + ++ DLI++IPVKM + LG + I NL+ Sbjct: 16 EQNQQPIETGATGAGVFRPLS---KAVASSTHNDIDLILDIPVKMTVELGRTKIAIRNLL 72 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 73 QLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 121 >gi|237653570|ref|YP_002889884.1| flagellar motor switch protein FliN [Thauera sp. MZ1T] gi|237624817|gb|ACR01507.1| flagellar motor switch protein FliN [Thauera sp. MZ1T] Length = 155 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 3/89 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + + ++FD+I++IPV++ + LG + I NL+ L+ G V+ LD GE +D+ +N Sbjct: 61 APAGKPGALNDFDMILDIPVQITVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVN 120 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 IA+GE+ ++ + FG+R+ +I+ Sbjct: 121 GTLIAQGEVVVVND---KFGIRLTDIITP 146 >gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91] gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91] Length = 157 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 NN+L + ++ D+I++IPV++ + LG + I NL+ L++G VI LD GE +D+ Sbjct: 60 QFSRNNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPMDV 119 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 120 LVNGCLIAQGEVVVVNE---KFGIRLTDIITP 148 >gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] Length = 134 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 9/124 (7%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + PL +T+ S + + + + S + T++ LI++IPVKM + Sbjct: 11 EAPLHETDGQSLGDTACPAPSRPEFPPAS------TTEGGSPLTEDLSLILDIPVKMTVE 64 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG M I L++LS+ V+ L+ + GE +DI IN IA+GE+ +M E +GVR+ + Sbjct: 65 LGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEVVVMGE---QYGVRIAD 121 Query: 143 ILNA 146 I+ Sbjct: 122 IVTP 125 >gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586] gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586] Length = 138 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 +++ S D+ + S +NI + + S + DLI Sbjct: 2 SDIKKPSEETDSVDDLWADAFNEQQSAEKGASGSTENIFKNFDVQD---TQGSMQDIDLI 58 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + Sbjct: 59 LDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSD- 117 Query: 133 DTHFGVRVIEILNA 146 +GVR+ +I+ Sbjct: 118 --KYGVRITDIITP 129 >gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] Length = 142 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 8/125 (6%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDS-----NNILEKSTDNFDLIMNIPVKMQI 81 QD + E ++V +E ++ S + ++ ++I++IPV++ + Sbjct: 10 QDAMAAEWAAALEQQSPGSEVVTTAEQVAPASFANFAPTPGGGAGNDINMILDIPVQLTV 69 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 LG + I +++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ Sbjct: 70 ELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLT 126 Query: 142 EILNA 146 +I+ Sbjct: 127 DIVTP 131 >gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 127 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 + D N SS + + M + N S + + ++ +LI++IPVKM + LG Sbjct: 1 MSDMNNSSGSEDKSMDNLWGEALNEQNAAGSTEQTAVPQFSEEMNLILDIPVKMTVELGR 60 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + FG+R+ +I+ Sbjct: 61 TKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIIT 117 Query: 146 A 146 Sbjct: 118 P 118 >gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kronotskyensis 2002] Length = 378 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 5/117 (4%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 + + P +E Q +V + S + +N +LI+++P+++ + LG Sbjct: 263 SYTPPPQRTEQPQQVYNVSPVQ--FESFDEEEERRYPENIELILDVPLEITVELGRTQKL 320 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + ++ S G +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N Sbjct: 321 VREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVNP 374 >gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a] Length = 414 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 69/138 (50%), Gaps = 11/138 (7%) Query: 10 YIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69 Y N P+Q P N Q ++ P+ S+ +N Sbjct: 279 YGYPNPAMNPAMYGQPVQPVMQPQPAVNYRNA-QLAQFESFEAPLGSE-------QKENL 330 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 L+M++P+++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++ ++ Sbjct: 331 QLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVI 390 Query: 130 EEDDTHFGVRVIEILNAQ 147 ++ +F VR+ EI+ ++ Sbjct: 391 DD---NFAVRITEIVKSK 405 >gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor hydrothermalis 108] gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor hydrothermalis 108] Length = 376 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCM 88 P+ ++ P+ +S + E+ +N +LI+++P+++ + LG Sbjct: 258 APQPSYTPPPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQK 317 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + ++ S G +I L+K GE VDI +N + IAKGE+ +++E +FGVR+ +I+N Sbjct: 318 LVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITDIVNP 372 >gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591] gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591] Length = 138 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 +++ S D+ + S + + I + + S + DLI Sbjct: 2 SDIKKPSEETDSVDDLWADAFNEQQSAEKSASSSTEGIFKNFDVQD---TQGSMQDIDLI 58 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++IPVK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + Sbjct: 59 LDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSD- 117 Query: 133 DTHFGVRVIEILNA 146 +GVR+ +I+ Sbjct: 118 --KYGVRITDIITP 129 >gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568] gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568] Length = 137 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 15/130 (11%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE------------KSTDNFDLIMNIP 76 ++ P+ + + D +E +++D + + S + DLI++IP Sbjct: 2 SDPKQPSGEGKESVDDLWADAFNEQLATDKTSASDAVFKSLEPQDASGSLQDIDLILDIP 61 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 VK+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + F Sbjct: 62 VKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVAD---KF 118 Query: 137 GVRVIEILNA 146 GVR+ +I+ Sbjct: 119 GVRITDIITP 128 >gi|323700137|ref|ZP_08112049.1| flagellar motor switch protein FliN [Desulfovibrio sp. ND132] gi|323460069|gb|EGB15934.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans ND132] Length = 183 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + + D + D+ + D I++IP+++ LG + I+ L+ Sbjct: 68 EKEQAFLSTQTHDYELPDMGPDAKAGSSSGKRDLDFILDIPLEVSAELGRTKLLINELLQ 127 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L +G V+ L+K GE ++I +N + +A+GE ++ E FG+R+ +I++ Sbjct: 128 LGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE---KFGIRLTDIISP 175 >gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703] gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703] Length = 136 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 N + + + I + + D+ + + + DLI++IPVK+ + LG M I L+ Sbjct: 23 NEQQTAEKAGSAEGIFKTLDVDTAS---GTAQDIDLILDIPVKLTVELGRTKMTIKELLR 79 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LS+G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 80 LSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITP 127 >gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein [Tepidanaerobacter sp. Re1] gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Tepidanaerobacter sp. Re1] Length = 376 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 Q+ ++ P Q +V + + + +LI+++P+++ + LG Sbjct: 252 QEAVLTMPQKEPLKSAQNAEVTVKPVEFHTFKEEPTAAQSSSLNLILDVPLEVTVELGRT 311 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I ++ +S G +I LDK GE DI +N + +AKGE+ +++E +FGVR+ EI+N+ Sbjct: 312 EKTIKEILEISSGTIIELDKMAGEPADILVNGKLVAKGEVVVIDE---NFGVRITEIINS 368 >gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1] gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1] Length = 346 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + E +D +L+++IP+++ + LG M + ++ + G +I LDK GE Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VDI +N + IA+GE+ +++E +FGVR+ EI++ + Sbjct: 306 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 338 >gi|301165894|emb|CBW25467.1| flagellar motor switch protein FliN [Bacteriovorax marinus SJ] Length = 131 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 4/118 (3%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 N S+P N E I V +S+ I + + + + N D I++IP+K+ + LG + Sbjct: 10 ENQSNPMANVED-INTARVSQLSDEIKAGDDALNKLKVQNLDFILDIPLKVTVELGRTEV 68 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I +L+ L +G V+ LDK GE ++I +N + +AKGE+ ++ E FG+R+ +I++ Sbjct: 69 MIKDLLQLGQGSVLELDKLAGEPLEILVNGKLVAKGEVVVVNE---KFGIRLTDIISP 123 >gi|330826723|ref|YP_004390026.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans K601] gi|329312095|gb|AEB86510.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans K601] Length = 151 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 5/132 (3%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEML--IQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74 G D+P + S I +S + + + +++++ Sbjct: 13 GDGAAADDPFAGWAEALEEQKSADARTIDAEQGGPLSGEPARAFAGGGDAPVQDINMVLD 72 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + Sbjct: 73 IPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND--- 129 Query: 135 HFGVRVIEILNA 146 FG+R+ +++ Sbjct: 130 KFGIRLTDVVTP 141 >gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70] gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. WCH70] Length = 401 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + + N L++++P+++ + LG + +++LS G +I LDK GE VD Sbjct: 304 AEFEPSPPADAEVKNLSLLLDVPLQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVD 363 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I +NN+ IAKGE+ +++E +FGVRV +I++ Sbjct: 364 ILVNNKLIAKGEVVVIDE---NFGVRVTDIIS 392 >gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937] gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937] Length = 138 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Query: 22 IDNPLQDTNVS----SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 I P ++T+ + N + +K+ + + S + DLI++IPV Sbjct: 4 IKKPSEETDSVDDLWADAFNEQQSAEKSAPGGTEGIFKNFDVQDTQGSMQDIDLILDIPV 63 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 K+ + LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +G Sbjct: 64 KLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVSD---KYG 120 Query: 138 VRVIEILNA 146 VR+ +I+ Sbjct: 121 VRITDIITP 129 >gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10] gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga naphthophila RKU-10] Length = 346 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + E +D +L+++IP+++ + LG M + ++ + G +I LDK GE Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VDI +N + IA+GE+ +++E +FGVR+ EI++ + Sbjct: 306 VDILVNGKLIARGEVVVIDE---NFGVRITEIVSPK 338 >gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C] gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C] Length = 97 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ST DL++++P+++ + LG M I +L+ L+ G VI LDK GE +DI Sbjct: 2 EAQTPRNGDSTRRLDLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +N + +A+GE ++ + FGVR+ +I++ Q Sbjct: 62 VNGRLVARGEAVVVND---KFGVRITDIVSPQ 90 >gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402] Length = 393 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74 + G M +P Q N+ + N M + ++ N LIM+ Sbjct: 258 MFGSGMPQGSPQQGGNMQAMNNMGMMPQMGMGASVQPVQFPPLQGFVSQEEQGNIGLIMD 317 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + ++M + LG I ++ + +G +I LDK GE VD+ +N++ IAKGE+ ++EE Sbjct: 318 VYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES-- 375 Query: 135 HFGVRVIEILNA 146 FGVR+ EIL+ Sbjct: 376 -FGVRITEILSP 386 >gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702] gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702] Length = 419 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 11/131 (8%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 P+Q P N Q +N P+ S+ +N L+M++P Sbjct: 291 PNPAMYGQPVQPVMQPQPAVNYRNA-QLAQFENFEAPLGSE-------QKENLQLLMDVP 342 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 +++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++ ++++ +F Sbjct: 343 LQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDD---NF 399 Query: 137 GVRVIEILNAQ 147 VR+ EI+ ++ Sbjct: 400 AVRITEIVKSK 410 >gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC 35405] gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola] gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC 35405] Length = 393 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74 + G M +P Q N+ + N M + ++ N LIM+ Sbjct: 258 MFGSGMPQGSPQQGGNMQAMNNMGMMPQMGMGASVQPVQFPPLQGFVSQEEQGNIGLIMD 317 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + ++M + LG I ++ + +G +I LDK GE VD+ +N++ IAKGE+ ++EE Sbjct: 318 VYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES-- 375 Query: 135 HFGVRVIEILNA 146 FGVR+ EIL+ Sbjct: 376 -FGVRITEILSP 386 >gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 377 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DNF 69 +E + Q T S + + + V N+S P+ +S + E+ +N Sbjct: 241 TKTIEKTVKSEQSKKQQTGASLQSFQPKKEEKSERVYNVS-PVQFESFDEEEERRYPENI 299 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 +LI+++P+++ + LG + ++ S G +I LDK GE VDI +N + IAKGE+ ++ Sbjct: 300 ELILDVPLEITVELGRTQKLVREILEFSTGSIIELDKLAGEPVDILVNGKVIAKGEVVVI 359 Query: 130 EEDDTHFGVRVIEILNA 146 +E FGVR+ +I+N Sbjct: 360 DES---FGVRITDIVNP 373 >gi|319406966|emb|CBI80603.1| Flagellar motor switch protein fliY [Bartonella sp. 1-1C] Length = 170 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 79/123 (64%), Gaps = 4/123 (3%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83 P TN S+P+ +E + I +S++ ++ N +LIM+IPV++Q++L Sbjct: 52 TPNLRTNPSTPSFGAEAAGKTT----IGGTGASNAPKNPSDTSSNTELIMSIPVEVQVVL 107 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 GS M ++ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FGV + EI Sbjct: 108 GSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGVSLTEI 167 Query: 144 LNA 146 ++ Sbjct: 168 IDK 170 >gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 2360] gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 2360] gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 1313] Length = 406 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + D + + N LIM++P+++ + LG I +++ G +I LDK GE VDI Sbjct: 314 AFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDI 373 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + IA GE+ +++E FGVR+ +IL+ Sbjct: 374 LVNGKVIAIGEVVVIDES---FGVRITDILHP 402 >gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM 6725] gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor bescii DSM 6725] Length = 378 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST--DN 68 +K+ + ++ Q P ++ P+ +S + E+ +N Sbjct: 240 VKEEVLRQTSSQTTKSQKKASQPPYTPPPQRKEQPQQVYNVSPVQFESFDEEEERRYPEN 299 Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +LI+++P+++ + LG + ++ S G +I L+K GE VDI +N + IAKGE+ + Sbjct: 300 IELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVV 359 Query: 129 MEEDDTHFGVRVIEILNA 146 ++E +FGVR+ +I+N Sbjct: 360 IDE---NFGVRITDIVNP 374 >gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 127 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%) Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + +D +LI++IPVKM + LG M I L+ LS+G V++LD GE +DI IN Sbjct: 36 AAPQFSDEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYL 95 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146 IA+GE+ ++ + FG+R+ +I+ Sbjct: 96 IAQGEVVVVSD---KFGIRITDIITP 118 >gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K] gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans 2CP-1] gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K] gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans 2CP-1] Length = 97 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ST D+++++P+++ + LG M I +L+ L+ G VI LDK GE +DI Sbjct: 2 EAQTPRNGDSTRRLDMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +N + +A+GE ++ + FGVR+ +I++ Q Sbjct: 62 VNGRLVARGEAVVVND---KFGVRITDIVSPQ 90 >gi|77165629|ref|YP_344154.1| surface presentation of antigens (SPOA) protein [Nitrosococcus oceani ATCC 19707] gi|254434523|ref|ZP_05048031.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27] gi|76883943|gb|ABA58624.1| Surface presentation of antigens (SPOA) protein [Nitrosococcus oceani ATCC 19707] gi|207090856|gb|EDZ68127.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27] Length = 143 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D P Q + E + E + +D N+ + N +LI++IPV M + Sbjct: 18 DAPSQPQAGVD-SGQEEESTSMFHPQAVLEELEADPGNVTKDI--NLELILDIPVTMAME 74 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ + Sbjct: 75 IGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVVNE---KFGIRLTD 131 Query: 143 ILNA 146 +++A Sbjct: 132 VISA 135 >gi|332531131|ref|ZP_08407045.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624] gi|332039416|gb|EGI75828.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624] Length = 122 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNI-LEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 + +E L ++ D EP S + + + +++++IPV++ + LG + I ++ Sbjct: 2 ADWAEALQEQKPDDGAVEPGGVLSESARGDAPAADINMVLDIPVQLSVELGRTKVPIKHI 61 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + L +G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++ Sbjct: 62 LQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVTP 111 >gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum JW20] gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum JW20] Length = 398 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + D + + N LIM++P+++ + LG I +++ G +I LDK GE VDI Sbjct: 306 AFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDI 365 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + IA GE+ +++E FGVR+ +IL+ Sbjct: 366 LVNGKVIAIGEVVVIDES---FGVRITDILHP 394 >gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC 27405] gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC 27405] Length = 406 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + D + + N LIM++P+++ + LG I +++ G +I LDK GE VDI Sbjct: 314 AFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDI 373 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + IA GE+ +++E FGVR+ +IL+ Sbjct: 374 LVNGKVIAIGEVVVIDES---FGVRITDILHP 402 >gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 366 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 10/136 (7%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD------NF 69 E +P+ VS + + +V E ++ + ++ D NF Sbjct: 226 EQGPKETGSPV-SAKVSQVAREASGRVVGEEVSGAVEVRPAEFVPLDKQIADQDMDGHNF 284 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 DLI+++PV++ + LG I ++NL+ G VI LDK G+ VDI +N + IA+GE+ ++ Sbjct: 285 DLIVDVPVRITVRLGQAAKTIGEILNLTPGSVIELDKMAGDPVDILVNGKLIARGEVVVI 344 Query: 130 EEDDTHFGVRVIEILN 145 +E +FGVR+ EI+N Sbjct: 345 DE---NFGVRITEIVN 357 >gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Syntrophothermus lipocalidus DSM 12680] gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Syntrophothermus lipocalidus DSM 12680] Length = 400 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 ++K+++ + + + N LIM++P+ + + LG I +++L G + Sbjct: 291 VKKSEIAVQPVQFAPLTPEVRYVEPQNISLIMDVPLNVSVELGRTRKTIKEILDLGPGSI 350 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + L+K GE VDI +N + IAKGE+ +++E ++GVRV I++ Sbjct: 351 VQLEKLAGEPVDILVNGKLIAKGEVVVIDE---NYGVRVTAIISP 392 >gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum nigrificans DSM 574] gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum nigrificans DSM 574] Length = 390 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 N++ + + + S + N+ N +LI++IP+K+ ++LG Sbjct: 268 NMAETPAPTAPMPTSPGIAGFSGEETFRPQNLGSLEQRNLELILDIPLKVSVVLGRTKRP 327 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I +++ ++ G V+ LD E V+I +N +A GE+ ++ E +FGVR+ I++ Sbjct: 328 IKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVVVVNE---NFGVRITNIISP 381 >gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus AHT2] gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus AHT2] Length = 134 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 K D D +S S + + + N D ++++P+++ + LG M I+ ++ L++G VI Sbjct: 27 KPDFDELSADAGSPAPSTASTGSQNLDFLLDVPLEVSVELGRTSMIINKMLQLTQGSVIE 86 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 LDK GE V+I +N + + KGE+ ++ E FG+RV EI++ Sbjct: 87 LDKAAGEPVEIFVNQKLMGKGEVVVVNE---RFGIRVTEIIS 125 >gi|46578463|ref|YP_009271.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. Hildenborough] gi|120603953|ref|YP_968353.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4] gi|46447874|gb|AAS94530.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. Hildenborough] gi|120564182|gb|ABM29926.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4] gi|311232391|gb|ADP85245.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris RCH1] Length = 170 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 + + + + + + D I++IP+ + LG Sbjct: 45 ATEEQGQLRKEKEQAFLSQAQEAKFKDLTEESRAPRPDSGKRELDFILDIPLDVSAELGR 104 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I+ L+ L +G V+ L+K GE +++ +N + +A+GE ++ E FGVR+ +I++ Sbjct: 105 TRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVARGEAVVINE---KFGVRLTDIIS 161 Query: 146 A 146 Sbjct: 162 P 162 >gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii MLHE-1] gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 + T E + + EP + N+ ++ N D+IM+IPV + + +G + I Sbjct: 108 ARETQRQENWQAERAELDELEPDAGAGRNLGDEEA-NLDVIMDIPVTLSMEIGRTQISIR 166 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++A Sbjct: 167 HLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNE---RFGIRLTDVISA 218 >gi|220903654|ref|YP_002478966.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867953|gb|ACL48288.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 190 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ +N + +A+ Sbjct: 103 KLKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVAR 162 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE ++ E FGVR+ +I++ Sbjct: 163 GEAVVINE---KFGVRLTDIISP 182 >gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551] gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551] Length = 385 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78 + P + T +E DV + S + + + + N D++++IP++ Sbjct: 254 EKQTEPPAAEYIQHEETQQAEPGHVSVDVQSASF-AEFEHVSSPQGDSRNLDMLLDIPLQ 312 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG + ++ LS G +I LDK GE VDI IN++ IAKGE+ +++E +FGV Sbjct: 313 VTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKLIAKGEVVVIDE---NFGV 369 Query: 139 RVIEILNAQ 147 RV +I++ + Sbjct: 370 RVTDIISQR 378 >gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51] gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 421 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 + P N + P+ ++ N +LI+++P Sbjct: 287 QQQQGYGGPAYGHNQGGYYTPGYGVPPTPVQPAQFVPLKPGDPLHGQE---NLELILDVP 343 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 +++ + LG I ++ L G VI LD+ GE VD+ +N + +AK E+ ++ E F Sbjct: 344 LQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLVAKCEVVVINET---F 400 Query: 137 GVRVIEILNA 146 G+R+ +I+ Sbjct: 401 GIRITDIVQP 410 >gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 370 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 3/105 (2%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 +K DV + D + +N +LIM+IP+ + + LG I +++ L++G Sbjct: 261 KAEKVDVKPVIFREFDDEDEPTTAEKENINLIMDIPLNVTVELGRTKKLIKDILELNEGS 320 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +I LDK GE VDI +N + IAKGE+ +++E +FGVR+++I+ Sbjct: 321 IIELDKLAGEPVDILVNGKFIAKGEVVVIDE---NFGVRILDIVK 362 >gi|187926921|ref|YP_001893266.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J] gi|241665250|ref|YP_002983609.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D] gi|187728675|gb|ACD29839.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J] gi|240867277|gb|ACS64937.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D] Length = 150 Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 5/128 (3%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78 M ++ + N + + +P+++D + ++ D+I++IPV+ Sbjct: 19 EMTMEEAMALEAAQRAAANPPAATPAAESSPVFKPLTAD--GLGGAQRNDIDMILDIPVQ 76 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ E FG+ Sbjct: 77 LTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVNE---KFGI 133 Query: 139 RVIEILNA 146 R+ +I+ Sbjct: 134 RLTDIITP 141 >gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 32953] gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 32953] gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] Length = 138 Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 7/126 (5%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----DNFDLIMNIPVKMQ 80 P D S ++ ++ + + ++ + DLI++IPVK+ Sbjct: 7 PSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLS 66 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + +GVR+ Sbjct: 67 VELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRI 123 Query: 141 IEILNA 146 +I+ Sbjct: 124 TDIITP 129 >gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC BAA-894] gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894] Length = 154 Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 23/145 (15%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD-------------- 67 I+ P + ++ L ++ + ++ + +D+ + + + Sbjct: 4 INKPSDENAGEMDDLWADALKEQKSTGDSADDLWADALSEQKTAGKSSADSVFRALEGGD 63 Query: 68 ------NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + +LIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN I Sbjct: 64 MVGALQDINLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 123 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 A+GE+ ++ + +GVR+ +I+ Sbjct: 124 AQGEVVVVAD---KYGVRITDIITP 145 >gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae] Length = 139 Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 ++ DN E + +E + ++IM+IPVK+ + LG M I L+NL+ Sbjct: 25 AQQSKPPKPTDNGPEIFDNLEMQDIENQFSDINMIMDIPVKLTVELGRTKMTIKKLLNLT 84 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G V++LD GE +DI IN IA+GE+ ++ + +G+R+ +I+ Sbjct: 85 QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGIRITDIITP 130 >gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus c2] gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus c2] Length = 139 Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLI 72 + + D+ + D + Q + + S + ++ N +++ Sbjct: 1 MAENTEQTDDSMDDWAAAMAEQAEVESGQTKSGGTVPPLDQFESAGKSNGTENPINLEVL 60 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 M++PV + + +G + I +L+ L++G ++ LD+ GE +D+ +N IA+GE+ ++ E Sbjct: 61 MDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRLAGEPLDVLVNGTLIARGEVVVINE- 119 Query: 133 DTHFGVRVIEILNA 146 FG+R+ ++++ Sbjct: 120 --KFGIRLTDVISP 131 >gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13] gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13] Length = 137 Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVKMQI 81 P + S ++ ++ + S S S + DLI++IPVK+ + Sbjct: 7 PSGEGKESVDDLWADAFNEQQATEKTSATDAVFKSLEAQDAVGSLQDIDLILDIPVKLTV 66 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 LG M I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + FGVR+ Sbjct: 67 ELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KFGVRIT 123 Query: 142 EILNA 146 +I+ Sbjct: 124 DIITP 128 >gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfitobacterium hafniense DCB-2] gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfitobacterium hafniense DCB-2] Length = 417 Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N +LI+++P+++ + LG I ++ L G VI LD+ GE VD+ +N + IAK Sbjct: 328 GQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLIAKC 387 Query: 125 EITIMEEDDTHFGVRVIEILNA 146 E+ ++ E FG+R+ +I+ Sbjct: 388 EVVVINET---FGIRITDIVQP 406 >gi|255021380|ref|ZP_05293428.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] gi|254969243|gb|EET26757.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] Length = 150 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 65/113 (57%), Gaps = 14/113 (12%) Query: 45 NDVDNISEPISSDSNNILEKST-----------DNFDLIMNIPVKMQIILGSCCMQISNL 93 D +EP+++ LE+++ N D+I++IPV + + LG +QI NL Sbjct: 33 KDTPPSAEPVAAAPMPDLEETSPAGGAPAGGAHANLDMILDIPVNLSVELGRTKIQIRNL 92 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + L++G V+ L++ GE +D+ +N IA+GE+ ++ + FG+R+ +I++ Sbjct: 93 LQLAQGSVVELERLAGEPMDVLVNGYLIAQGEVVLVND---KFGIRLTDIISP 142 >gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus nematophila ATCC 19061] gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus nematophila ATCC 19061] Length = 135 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 6/132 (4%) Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74 + D L D + + +I E + + + DLIM+ Sbjct: 1 MSDAKQPTDTSLTDDMWAEALEQQAAQQTSDGGASIFENLEPQD---VLSQLSDIDLIMD 57 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + Sbjct: 58 IPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD--- 114 Query: 135 HFGVRVIEILNA 146 +G+R+ +I+ Sbjct: 115 KYGIRITDIITP 126 >gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. enterocolitica 8081] gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica W22703] Length = 138 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 7/126 (5%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----DNFDLIMNIPVKMQ 80 P D S ++ ++ D + ++ + DLI++IPVK+ Sbjct: 7 PSDDGKESVDDLWADAFNEQLASDKPAATTDGVFKSLEAPDALGNLQDIDLILDIPVKLT 66 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + +GVR+ Sbjct: 67 VELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRI 123 Query: 141 IEILNA 146 +I+ Sbjct: 124 TDIITP 129 >gi|296135699|ref|YP_003642941.1| flagellar motor switch protein FliN [Thiomonas intermedia K12] gi|295795821|gb|ADG30611.1| flagellar motor switch protein FliN [Thiomonas intermedia K12] Length = 144 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 51 SEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 P + + + +N DL+M+IPV + + LG +QI L+ L++G V+ LD+ G Sbjct: 43 PAPFAELRADQGGAAPNNQLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAG 102 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 E +D+ +N IA+GE+ ++ + FG+R+ +I++ Sbjct: 103 EPMDVLVNGFLIARGEVVLVND---KFGIRLTDIVSP 136 >gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC 35185] gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC 35185] Length = 398 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S ++ + N LI+++P+++ + LG I +++ L+ G ++ LDK GE VDI +N Sbjct: 305 STAPVQVNDANIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVN 364 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +AKGE+ +++E +FGVR+ +I++ Sbjct: 365 GKFLAKGEVVVIDE---NFGVRITDIVSP 390 >gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032] gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032] Length = 154 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 5/122 (4%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE--KSTDNFDLIMNIPVKMQIILG 84 + T S+ ++ L ++ S + + + + +LIM+IPVK+ + LG Sbjct: 27 KGTGDSAEDLWADALSEQKTAGKSSADSVFRALEGGDMIGALQDINLIMDIPVKLTVELG 86 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 87 RTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDII 143 Query: 145 NA 146 Sbjct: 144 TP 145 >gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1] Length = 404 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + P + N + + +N DLIM++P+++ + LG IS +++ G +I L+K Sbjct: 303 NAQFTPFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKL 360 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 GE +DI +N + +AKGE+ ++EE FGVR+ EI+N++ Sbjct: 361 AGEPIDILVNGKYVAKGEVVVIEES---FGVRITEIVNSK 397 >gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901] gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901] Length = 147 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + Q +SE + + + + D+I++IPV + + +G + I NL+ Sbjct: 31 EDEAAANNQGAAPMELSEFDEPAAAPASQGNNPDLDVILDIPVSISMEVGRTSITIRNLL 90 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 91 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRMTDVISP 139 >gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Selenomonas sputigena ATCC 35185] gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Selenomonas sputigena ATCC 35185] Length = 394 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S ++ + N LI+++P+++ + LG I +++ L+ G ++ LDK GE VDI +N Sbjct: 301 STAPVQVNDANIGLILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVN 360 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +AKGE+ +++E +FGVR+ +I++ Sbjct: 361 GKFLAKGEVVVIDE---NFGVRITDIVSP 386 >gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629] Length = 404 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + P + N + + +N DLIM++P+++ + LG IS +++ G +I L+K Sbjct: 303 NAQFTPFGAMPNQVYQP--ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKL 360 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 GE +DI +N + +AKGE+ ++EE FGVR+ EI+N++ Sbjct: 361 AGEPIDILVNGKYVAKGEVVVIEES---FGVRITEIVNSK 397 >gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F] gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F] Length = 138 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST----DNFDLIMNIPVKMQ 80 P D S ++ ++ + + ++ + DLI++IPVK+ Sbjct: 7 PSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLS 66 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ ++ + +GVR+ Sbjct: 67 VELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRI 123 Query: 141 IEILNA 146 +I+ + Sbjct: 124 TDIITS 129 >gi|294339870|emb|CAZ88233.1| Flagellar motor switch protein fliN [Thiomonas sp. 3As] Length = 144 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 51 SEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 P + + + +N DL+M+IPV + + LG +QI L+ L++G V+ LD+ G Sbjct: 43 PAPFAELRADQGGGAPNNQLDLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAG 102 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 E +D+ +N IA+GE+ ++ + FG+R+ +I++ Sbjct: 103 EPMDVLVNGFLIARGEVVLVND---KFGIRLTDIVSP 136 >gi|295678045|ref|YP_003606569.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002] gi|295437888|gb|ADG17058.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002] Length = 154 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 8/140 (5%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK-----ST 66 + +LE L + ++ + + + + P ++ L K + Sbjct: 9 ESDLEAAEQLAAGALSAAEDDAAMDDWASALAEQNGNAEVNPAAAGVFQPLSKVEPTATH 68 Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++ D+I++IPV+M + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ Sbjct: 69 NDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEV 128 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ + FG+R+ +I+ Sbjct: 129 VVVND---KFGIRLTDIITP 145 >gi|116694516|ref|YP_728727.1| flagellar motor switch protein/type III secretory pathway protein [Ralstonia eutropha H16] gi|113529015|emb|CAJ95362.1| flagellar motor switch protein/type III secretory pathway protein [Ralstonia eutropha H16] Length = 149 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 60/97 (61%), Gaps = 6/97 (6%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +P++ ++ + ++ ++I++IPV++ + LG + I NL+ L++G V+ LD G Sbjct: 50 VFQPLAKEAPS---GFRNDIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAG 106 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 E +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 107 EPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 140 >gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42] gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY] gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42] gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY] Length = 149 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 16 EGRSMHIDNPLQDTNVSSPTNN--SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73 D+P + I +S + E + ++++ Sbjct: 10 NSGGSAADDPFAGWAEALEEQKRVDGQTIDAEQGGPLSGEPARPYAAGGEPQVHDINMVL 69 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + Sbjct: 70 DIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND-- 127 Query: 134 THFGVRVIEILNA 146 FG+R+ +++ Sbjct: 128 -KFGIRLTDVVTP 139 >gi|302338091|ref|YP_003803297.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM 11293] gi|301635276|gb|ADK80703.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM 11293] Length = 375 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 5/111 (4%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + + + +V + P + ++ N L+M++ ++M + LG I +++ Sbjct: 262 GGGQGMYNQANVQPVQFPPLN--PQMVSGEQGNIGLLMDVYMEMTVELGRTKRLIKDILG 319 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +G +I LDK GE VDI +N++ IAKGE+ +++E +FGVRV EI++ Sbjct: 320 MGEGTIIELDKLAGEPVDILVNHKLIAKGEVVVIDE---NFGVRVTEIVSP 367 >gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004] gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus bovienii SS-2004] Length = 135 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCMQ 89 + +E L Q+ S N + + + DLIM+IPVK+ + LG M Sbjct: 13 TEDMWAEALEQQAAQQTSDSGASIFENLEPQDALAQLSDIDLIMDIPVKLSVELGRTKMT 72 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I L+ LS+G V+ LD GE +DI IN IA+GE+ ++ + +G+R+ +I+ Sbjct: 73 IKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGIRITDIITP 126 >gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica Y11] gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 124 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + DLI++IPVK+ + LG M I L+ LS+G V++LD GE +DI IN IA+GE+ Sbjct: 39 QDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEV 98 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ + +GVR+ +I+ Sbjct: 99 VVVAD---KYGVRITDIITP 115 >gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003] gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003] Length = 124 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 +E + S + + DLI++IPVK+ + LG M I L+ LS Sbjct: 10 NEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLRLS 69 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G V++LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ + Sbjct: 70 QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITS 115 >gi|332524238|ref|ZP_08400464.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2] gi|332107573|gb|EGJ08797.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2] Length = 144 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 4/114 (3%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 P SE+ V + + ++ S ++ ++I++IPV++ + LG + I + Sbjct: 25 EPEVASEVRAPAETVAP-AAFTNFGASVPASGSGNDINMILDIPVQLTVELGRTRIPIKH 83 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 84 ILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIVTP 134 >gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514] gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X561] gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein [Thermoanaerobacter sp. X513] gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514] gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X561] gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X513] Length = 375 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 68/116 (58%), Gaps = 3/116 (2%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 +N+S+ ++ + N + + + + ++ +N +LI+++P+ + + LG Sbjct: 253 SNISTRDKVTKKKQKVNVSPVVFQSFDEEPTSKSKEDKENLELILDVPLTITVELGKTKK 312 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 I +++ LS+G +I LDK GE VDI N + IAKGE+ +++E +FGVR+ +I+ Sbjct: 313 LIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDE---NFGVRITDIV 365 >gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10] gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar Microtus str. 91001] gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua] gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125] gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1] gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92] gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A] gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. India 195] gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10] gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar Microtus str. 91001] gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua] gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92] gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125] gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. India 195] gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A] gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004] gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038] gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 138 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 +E + S + + DLI++IPVK+ + LG M I L+ LS Sbjct: 24 NEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLRLS 83 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G V++LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ + Sbjct: 84 QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITS 129 >gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421] gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421] Length = 377 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 7/136 (5%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 + G +M + P Q + M++ + + S N + N Sbjct: 242 GNPQMPGMNMQMGIPQQMNGMQQ----GGMIMPGINPNVQSVQFQPLQNVPVGTEQGNIG 297 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LIM++ +++ + LG M I +++ + +G +I LDK GE VDI +N++ IAKGE+ +++ Sbjct: 298 LIMDVYMEVTVELGRTRMIIKDILGMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVID 357 Query: 131 EDDTHFGVRVIEILNA 146 E +FGVRV EIL+ Sbjct: 358 E---NFGVRVTEILSP 370 >gi|218887303|ref|YP_002436624.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758257|gb|ACL09156.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 180 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 6/108 (5%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 ++ +++E S + D I++IP+ + LG + I+ L+ L + Sbjct: 71 ASAAREAKFKDLTEEAKSPRP---DSGRRELDFILDIPLDVSAELGRTRLLINELLQLGQ 127 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G V+ L+K GE +++ +N + +A+GE ++ E FGVR+ +I++ Sbjct: 128 GSVVELNKLAGEPLEVYVNGKLVARGEAVVINE---KFGVRLTDIISP 172 >gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 137 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 +E + S + + + DLI++IPVK+ + LG M I L+ L+ Sbjct: 23 NEQQAAEKPAATTEGIFKSLEGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLT 82 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G V+ LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 83 QGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD---KYGVRITDIITP 128 >gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum SCRI1043] gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum SCRI1043] Length = 137 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 52 QDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ + +GVR+ +I+ Sbjct: 112 VVVSD---KYGVRITDIITP 128 >gi|292489154|ref|YP_003532041.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|292900272|ref|YP_003539641.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291200120|emb|CBJ47246.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291554588|emb|CBA22222.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] Length = 124 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 5/112 (4%) Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKS--TDNFDLIMNIPVKMQIILGSCCMQISNLV 94 +S + + +SE S + + +D +LI++IPVKM + LG M I L+ Sbjct: 7 SSGSAVNDLGAEAMSEQTSEGMTQAMSATHISDELNLILDIPVKMTVELGRTKMTIKELL 66 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LS+G V+ LD GE +DI IN IA+GE+ ++ + FG+R+ +I+ Sbjct: 67 RLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD---KFGIRITDIITP 115 >gi|94987083|ref|YP_595016.1| flagellar motor switch/type III secretory pathway protein [Lawsonia intracellularis PHE/MN1-00] gi|94731332|emb|CAJ54695.1| Flagellar motor switch/type III secretory pathway protein [Lawsonia intracellularis PHE/MN1-00] Length = 164 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 E S D I++IP+ + LG + I+ L+ L +G V+ L+K GE +++ + Sbjct: 70 ARTPRPEGSRRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFV 129 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + +A+GE ++ E FGVR+ +I++ Sbjct: 130 NGKLVARGEAVVINE---KFGVRLTDIISP 156 >gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] Length = 124 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 +E + S + + DLI++IPVK+ + LG M I L+ LS Sbjct: 10 NEQQATEKPAATTEGVFKSLEAPDALGNLQDIDLILDIPVKLTVELGRTKMTIKELLRLS 69 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G V++LD GE +DI IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 70 QGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITP 115 >gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198] gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198] Length = 136 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 10/124 (8%) Query: 28 DTNVSSPTNNSEMLIQK-----NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D + S+ ++ + Q+ ++ ++ E + + + + + +LIM+IPVK+ + Sbjct: 9 DNSQSAEDMWADAMEQQTGKSQDNSSDLFEHLLPEDDTL--NHLSDINLIMDIPVKLTVE 66 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + +G+R+ + Sbjct: 67 LGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD---KYGIRITD 123 Query: 143 ILNA 146 I+ Sbjct: 124 IITP 127 >gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM 12168] gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM 12168] Length = 396 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 5/109 (4%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + M + +V ++ P ++ E+ N LIM++ ++M + LG QI ++ + Sbjct: 287 ASMGMNAPNVQSLQFPGLQSGMSVTEQG--NIGLIMDVYMEMTVELGRTKKQIKEILGMG 344 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G +I LDK GE VDI +N++ IAKGE+ +++E +FGVRV EIL+ Sbjct: 345 EGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDE---NFGVRVTEILSP 390 >gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 398 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%) Query: 17 GRSMHIDNPLQDTNVSSP-TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 I P Q+ + + + + + + S N DLIM++ Sbjct: 263 QAETAISPPPQEPIYGQAFVQSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLIMDV 322 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+ + + LG I ++ L++G +I LDK GE VD+ +N + IAKGE+ +++E + Sbjct: 323 PLDVSVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDE---N 379 Query: 136 FGVRVIEILNA 146 +G+R+ I++ Sbjct: 380 YGIRITTIISP 390 >gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens subsp. laumondii TTO1] Length = 139 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 3/99 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 D+ + S + DLI++IPVK+ + LG M I L+ LS+G V++LD Sbjct: 35 DSSAAIFESLEPQDALAHLSDIDLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGL 94 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE +DI IN IA+GE+ ++ + +G+R+ +I+ Sbjct: 95 AGEPLDILINGYLIAQGEVVVVSD---KYGIRITDIITP 130 >gi|309779461|ref|ZP_07674222.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA] gi|308921702|gb|EFP67338.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA] Length = 151 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 61/101 (60%), Gaps = 5/101 (4%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + + +P+++D + ++ D+I++IPV++ + LG + I NL+ L++G V+ LD Sbjct: 47 ESSPVFKPLTAD--GLGGAQRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELD 104 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE +D+ +N IA+GE+ ++ E FG+R+ +I+ Sbjct: 105 ALAGEPMDVLVNGYLIAQGEVVVVNE---KFGIRLTDIITP 142 >gi|94314218|ref|YP_587427.1| flagellar motor switch FliN [Cupriavidus metallidurans CH34] gi|93358070|gb|ABF12158.1| Flagellar motor switch FliN [Cupriavidus metallidurans CH34] Length = 156 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 57/98 (58%), Gaps = 6/98 (6%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + P++ ++ ++ +I++IPV++ + LG + I NL+ L++G V+ LD Sbjct: 56 TVFPPLAQEAPP---GFHNDIGMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLA 112 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 113 GEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 147 >gi|259907614|ref|YP_002647970.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96] gi|224963236|emb|CAX54720.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96] gi|283477456|emb|CAY73372.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163] gi|310764880|gb|ADP09830.1| Flagellar motor switch protein FliN [Erwinia sp. Ejp617] Length = 124 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE Sbjct: 38 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 97 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + ++ + FG+R+ +I+ Sbjct: 98 VVVVSD---KFGIRITDIITP 115 >gi|319403949|emb|CBI77537.1| Flagellar motor switch protein fliY [Bartonella rochalimae ATCC BAA-1498] Length = 170 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 4/123 (3%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83 P TN +P+ E + I +S++ ++ N +LIM+IPV++Q++L Sbjct: 52 TPNLRTNPGTPSFGGEAAGKTT----IGGTGASNAPKSPGDTSSNTELIMSIPVEVQVVL 107 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 GS M ++ L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FGV + EI Sbjct: 108 GSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGVSLTEI 167 Query: 144 LNA 146 ++ Sbjct: 168 IDK 170 >gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO] gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO] Length = 343 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + + + + +D +L++++P+K+ + LG M + ++ ++ G +I LDK GE Sbjct: 239 DQSQRAAVSTPSEFSDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLIELDKLTGEP 298 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VDI +N + IAKGE+ +++E +FGVR+ EI+ + Sbjct: 299 VDILVNGRLIAKGEVVVVDE---NFGVRITEIVTPK 331 >gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName: Full=Flagellar motor switch protein MopA Length = 106 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 21 QDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 80 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ + +GVR+ +I+ Sbjct: 81 VVVSD---KYGVRITDIITP 97 >gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM 2489] gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM 2489] Length = 408 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + ++ N +LIM++ ++M + LG I +++ L +G +I LDK GE VDI +N Sbjct: 315 TQSVGGGEQGNINLIMDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVN 374 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ IAKGE+ +++E +FGVRV EIL A Sbjct: 375 HKPIAKGEVVVIDE---NFGVRVTEILPA 400 >gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulovorans 743B] gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B] gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulovorans 743B] Length = 400 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 12/145 (8%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI--SEPISSDSNNI-------L 62 N + M+ +N + + N+ + V N+ S+P+ Sbjct: 251 TSNYNSQPMNYNNQQTNYDSQPVNYNAAPQAYQQPVHNVYESKPVEVSKATFQPLRTADT 310 Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + +N DLIM++P+ + ++LG I ++++L+ G +I LDK E V+I +N +KIA Sbjct: 311 KSLPNNIDLIMDVPLNISVVLGKTRKSIKDILSLNNGSLIELDKLAEEPVEILVNGKKIA 370 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 GE+ +++E +FGVR+ I++++ Sbjct: 371 YGEVVVVDE---NFGVRITSIVSSE 392 >gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11] gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11] Length = 372 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 72/133 (54%), Gaps = 5/133 (3%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 D + + I N + + + + + + + +D + EK +N +LI Sbjct: 237 DIINTGTAGIKNDFNEEIRHEEQISQPKSRKVDVKPVVFKELDADEQTVSEK--ENINLI 294 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 M+IP+ + + LG I +++ L++G +I LDK GE VDI +N + IAKGE+ +++E Sbjct: 295 MDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLAGEPVDILVNGKFIAKGEVVVIDE- 353 Query: 133 DTHFGVRVIEILN 145 +FGVR+++I+ Sbjct: 354 --NFGVRILDIVK 364 >gi|54308124|ref|YP_129144.1| flagellar motor switch protein [Photobacterium profundum SS9] gi|46912550|emb|CAG19342.1| putative polar flagellar switch protein FliN [Photobacterium profundum SS9] Length = 129 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISS---DSNNILEKSTDNFDLIMNIPVKMQII 82 + + + + L ++ P+ +S I + D IM+IPV + + Sbjct: 1 MSQNDQQMADDWAAALAEQTVDGAQPAPLEELVDESTPISDDERRKLDTIMDIPVTISME 60 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ + Sbjct: 61 VGRTQISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTD 117 Query: 143 ILN 145 +++ Sbjct: 118 VIS 120 >gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2] Length = 151 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T +E + ++ S + I N D+I++IPV + + +G + I NL+ Sbjct: 37 TPVAEPSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 94 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 95 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 143 >gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320] gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320] gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] Length = 136 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 73/132 (55%), Gaps = 10/132 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQK-----NDVDNISEPISSDSNNILEKSTDNFDLIMN 74 M +N D + S+ ++ + Q+ ++ ++ E + + + + + +LIM+ Sbjct: 1 MSDENRPTDNSQSAEDMWADAMEQQTGKSQDNSSDVFEHLLPEDDTL--NHLSDINLIMD 58 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPVK+ + LG M I L++LS+G V++LD GE +DI IN IA+GE+ ++ + Sbjct: 59 IPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD--- 115 Query: 135 HFGVRVIEILNA 146 +G+R+ +I+ Sbjct: 116 KYGIRITDIITP 127 >gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sp. AT1b] gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sp. AT1b] Length = 376 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 9/108 (8%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 E+ + + + + P S E + N L+ ++P+ + + LG + ++ LS+ Sbjct: 271 EVAVSQAEFMPLQSPASQ------EAAPANLGLLYDVPLNVTVELGRTKKSVREVLELSQ 324 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G +I LDK GE VDI +N Q+IA+GE+ ++EE +FGVRV EI+ Sbjct: 325 GSIIELDKLAGEPVDIYVNQQRIARGEVVVIEE---NFGVRVTEIIQP 369 >gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC 35580] gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC 35580] Length = 382 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 3/96 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S S N + E N LIM++ ++M + LG I ++++ +G +I LDK GE Sbjct: 283 SVQFSPLLNGVTEAEQGNIGLIMDVFMEMTVELGRTRKMIKEILSMGEGHIIELDKLAGE 342 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 VDI +N++ IAKGE+ +++E +FGVRV EIL+ Sbjct: 343 PVDILVNHKPIAKGEVVVIDE---NFGVRVTEILSP 375 >gi|307731350|ref|YP_003908574.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003] gi|307585885|gb|ADN59283.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003] Length = 155 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 6/115 (5%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 + N + +P+S + + ++ D+I++IPV+M + LG + I Sbjct: 38 ALAEQNDNSSEISASTAGVFQPLSKVAPTT---TRNDIDMILDIPVQMTVELGRTKLAIR 94 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 95 NLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 146 >gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC 49176] gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC 49176] Length = 370 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILG 84 Q +P + V+ + NI +N LIM++P+++ + LG Sbjct: 253 AQQPTAPAPQPMPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTVELG 312 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 I +++ S G +I L+K GE++D+ +N + +AKGE+ ++E+ +FG+R+ EI+ Sbjct: 313 RTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIED---NFGIRITEIV 369 Query: 145 N 145 Sbjct: 370 K 370 >gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM 4359] gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM 4359] Length = 344 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + E D +L++++P+K+ + LG M + ++ + G +I LDK GE V Sbjct: 245 ELKPSGTAKTEIPQDKLELLLDVPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPV 304 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 DI +N + IA+GE+ +++E +FGVRV EI++ + Sbjct: 305 DILVNGKLIARGEVVVIDE---NFGVRVTEIVSPK 336 >gi|224370776|ref|YP_002604940.1| FliN [Desulfobacterium autotrophicum HRM2] gi|223693493|gb|ACN16776.1| FliN [Desulfobacterium autotrophicum HRM2] Length = 113 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 M ++ ++ + ++ +++ D I++IP+ + + LG M +++L+ L +G Sbjct: 1 MAENNSEANSSQHGSDDEFDHEGQQTGRELDFILDIPLDLSVELGRARMLVNDLLQLGQG 60 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ L+K GE +++ IN + IA+GE+ ++ E FGVR+ +I+ Sbjct: 61 SIVELNKLAGEPLEVYINRKLIARGEVVVVNE---KFGVRLTDIITP 104 >gi|212634375|ref|YP_002310900.1| flagellar motor switch protein [Shewanella piezotolerans WP3] gi|212555859|gb|ACJ28313.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] Length = 126 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 4/118 (3%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 DT +E I++ + E SSD+ + E+ D IM+IPV + + +G Sbjct: 4 DTGDDWAAAMAEQAIEEAQAVELDE-FSSDAAPLSEEEASKLDAIMDIPVTISMEVGRSF 62 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 INIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117 >gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex degensii KC4] gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex degensii KC4] Length = 360 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 SS + L+ +LI++IP+K+ ++LG I ++ L G ++ LD E V+I Sbjct: 259 SSPAPPPLDVDRSRLELILDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEI 318 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +N +A+GE+ ++EE +FGVR+ I+ Q Sbjct: 319 LVNGVLVARGEVVVVEE---NFGVRITSIVTPQ 348 >gi|296157440|ref|ZP_06840275.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1] gi|295892212|gb|EFG71995.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1] Length = 154 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 6/112 (5%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 ++ + +P+S + ++ D+I++IPV+M + LG + I NL+ Sbjct: 40 AEQNDNTEVSATTAGVFQPLSKVEPT---STRNDIDMILDIPVQMTVELGRTKIAIRNLL 96 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 97 QLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 145 >gi|91785620|ref|YP_560826.1| flagellar motor switch protein FliN [Burkholderia xenovorans LB400] gi|91689574|gb|ABE32774.1| Flagellar motor switch protein FliN [Burkholderia xenovorans LB400] Length = 154 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 6/112 (5%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 ++ + +P+S + ++ D+I++IPV+M + LG + I NL+ Sbjct: 40 AEQNDNSEVSAATAGVFQPLSKVEPT---STRNDIDMILDIPVQMTVELGRTKIAIRNLL 96 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 97 QLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND---KFGIRLTDIITP 145 >gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp. avenae ATCC 19860] Length = 148 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 66/137 (48%), Gaps = 4/137 (2%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTN-NSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69 +N D+P + +S+ + ++ ++ E ++ Sbjct: 5 GDNNDNDGKSAADDPFAGWAEALEEQKSSDEAPPTDQGGPLAGDPVRPFSSSNEAPVNDI 64 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 +++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ Sbjct: 65 NMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 124 Query: 130 EEDDTHFGVRVIEILNA 146 + FG+R+ +++ Sbjct: 125 ND---KFGIRLTDVVTP 138 >gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus degradans 2-40] gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40] Length = 135 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 7/119 (5%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGSCC 87 S + + Q+ D ++ I D + + N D+I++IPV + + +G Sbjct: 12 SMADEWAAAMEQQETEDGAAQSIDLDEFQPVTGAPTNNNPDLDVILDIPVSISMEVGRTS 71 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 72 ITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRMTDVISP 127 >gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1] gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1] Length = 148 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 65/137 (47%), Gaps = 4/137 (2%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTN-NSEMLIQKNDVDNISEPISSDSNNILEKSTDNF 69 N D+P + +S+ + ++ ++ E ++ Sbjct: 5 GDSNDNDGKSAADDPFAGWAEALEEQKSSDESQPVDQGGPLAGEPVRPFSSSNEAPVNDI 64 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 +++++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ Sbjct: 65 NMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 124 Query: 130 EEDDTHFGVRVIEILNA 146 + FG+R+ +++ Sbjct: 125 ND---KFGIRLTDVVTP 138 >gi|73539703|ref|YP_300070.1| Type III secretion system outer membrane O protein [Ralstonia eutropha JMP134] gi|72123040|gb|AAZ65226.1| Type III secretion system outer membrane O protein [Ralstonia eutropha JMP134] Length = 142 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQ 80 +P+ D + S + I + E + ++ ++I++IPV++ Sbjct: 11 DPMDDWASALAEQTSATAAEAPVAAAIPAAATVFPPLAKEAPSGFQNDIEMILDIPVQLT 70 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ Sbjct: 71 VELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVND---KFGIRL 127 Query: 141 IEILNA 146 +I+ Sbjct: 128 TDIITP 133 >gi|149908449|ref|ZP_01897112.1| putative polar flagellar switch protein FliN [Moritella sp. PE36] gi|149808612|gb|EDM68547.1| putative polar flagellar switch protein FliN [Moritella sp. PE36] Length = 127 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + + + +++ V+ E S+D N + D I++IPV + + +G Sbjct: 1 MSEDQDQMANDWAAAMAEQSTVEAAELEDFSNDDNAFSPEQQHKLDSILDIPVVISMEVG 60 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 61 RSKISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 117 Query: 145 N 145 + Sbjct: 118 S 118 >gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae WPP163] gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae WPP163] Length = 137 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + DLI++IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ Sbjct: 52 QDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ + +GVR+ +I+ Sbjct: 112 VVVSD---KYGVRITDIMTP 128 >gi|312173312|emb|CBX81567.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC BAA-2158] Length = 93 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +LI++IPVKM + LG M I L+ LS+G V+ LD GE +DI IN IA+GE Sbjct: 7 SDELNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGE 66 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + ++ + FG+R+ +I+ Sbjct: 67 VVVVSD---KFGIRITDIITP 84 >gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 381 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 76/136 (55%), Gaps = 3/136 (2%) Query: 9 SYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN 68 S I ++ E +N L+D N+ ++ + N + + + + ++ +N Sbjct: 239 SAIIESDEKSVETDNNILKDNNILKEEKTTKKKQKVNASPVVFQSFDEEPSIEGKEEKEN 298 Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +LI+++P+ + + LG I +++ LS+G +I LDK GE VDI N + IAKGE+ + Sbjct: 299 LELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVV 358 Query: 129 MEEDDTHFGVRVIEIL 144 ++E +FGVR+I+I+ Sbjct: 359 IDE---NFGVRIIDIV 371 >gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. spizizenii str. W23] Length = 379 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPI---SSDSNNILEKSTDNFDLI 72 + + P + K P+ + D N + N D++ Sbjct: 241 QPKEPVTPEPRIEPQQQQQQPPKRQGTPKKAAPVQVSPVEFSAFDPNEASQAPIHNLDML 300 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE Sbjct: 301 LDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE- 359 Query: 133 DTHFGVRVIEILN 145 +FGVRV +IL+ Sbjct: 360 --NFGVRVTDILS 370 >gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT] gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain [Clostridium novyi NT] Length = 396 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 IK +L ID P + P N+ + ++ V + N + N D Sbjct: 260 IKSDLNKAPQQID-PKPAETYTQPQNS----VPQSQVSVQRANFAPLDQNPISGVPQNID 314 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LI+++P+++ ++LG I +++L G +I LDK E V+I +N +KIA GE+ +++ Sbjct: 315 LILDVPLEISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVD 374 Query: 131 EDDTHFGVRVIEILNAQ 147 E +FGVR++ I++ + Sbjct: 375 E---NFGVRIVSIVSGE 388 >gi|188592198|ref|YP_001796796.1| flim: flagellar motor switching and energizing component. flin/mopa/spao family. [Cupriavidus taiwanensis LMG 19424] gi|170938572|emb|CAP63559.1| FliM: flagellar motor switching and energizing component. fliN/mopA/spaO family [Cupriavidus taiwanensis LMG 19424] Length = 148 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 59/97 (60%), Gaps = 6/97 (6%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + P++ ++ + ++ ++I++IPV++ + LG + I NL+ L++G V+ LD G Sbjct: 49 VFPPLAKEAPS---GFRNDIEMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAG 105 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 E +D+ +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 106 EPMDVLVNGYLIAQGEVVVVND---KFGIRLTDIITP 139 >gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans SRS30216] gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans SRS30216] Length = 249 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEP-ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 D + L + D P + DL+ ++ + + + LG Sbjct: 129 DAGGETLALIGLTLTAQPDTTPAPMPSFAPAGTPAPAGPRRTMDLLRDVQMDVTVELGRT 188 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 M + +L+ L+ G V+ LD+ G D+ +N Q IA+GE+ +++ED + +R+ EI+ Sbjct: 189 SMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDED---YAIRITEIVTP 245 Query: 147 Q 147 + Sbjct: 246 E 246 >gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137 str. F0430] gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137 str. F0430] Length = 399 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 +P + P+SS + + N LI+++P+++ + LG Sbjct: 281 GYGAPPMQPHVASNVPVQSAQFTPLSSVPVQVND---ANIGLILDVPLQVNVELGRTKKS 337 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I ++++L+KG ++ LDK GE VDI +N + +AKGE+ +++E +FGVR+ EI++ Sbjct: 338 IKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 391 >gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira defluvii] gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira defluvii] Length = 124 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 N + D++ N + N + +++IP+++ + +GS M Sbjct: 3 NGDTTAPPDASNAGAGDINVQPTSFPPVDNQNAVPANKNIEFVLDIPLQVTVQIGSTRML 62 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I L+ L +G VI L+K GE +++ +NN+ +A+GE+ ++ E FG+R+ ++++ Sbjct: 63 IRELLQLGQGSVIELNKLAGEPMEVLVNNKLVARGEVVVVNE---KFGIRLTDVVSP 116 >gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7] gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7] Length = 157 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 5/112 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T +E + ++ + + + LE N D+I++IPV + + +G + I NL+ Sbjct: 43 TPVAEPSTPRAPMEEFGAAPKAPTISGLEG--PNLDVILDIPVTISMEVGHTDISIRNLL 100 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 149 >gi|257095346|ref|YP_003168987.1| flagellar motor switch protein FliN [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047870|gb|ACV37058.1| flagellar motor switch protein FliN [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 145 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S + D+I++IPV++ + LG + I NL+ L+ G V+ LD GE +++ Sbjct: 48 SFGEQGNSGSLMNELDMILDIPVQLAVELGRTRITIKNLLQLAHGSVVELDAMAGEPLNV 107 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA+GE+ ++ + FG+R+ +I+ Sbjct: 108 FVNGTLIAQGEVVVVND---KFGIRLTDIVTP 136 >gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399] gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399] Length = 395 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 +P + P+SS + + N LI+++P+++ + LG Sbjct: 277 GYGAPPMQPHVASNVPVQSAQFTPLSSVPVQVND---ANIGLILDVPLQVNVELGRTKKS 333 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I ++++L+KG ++ LDK GE VDI +N + +AKGE+ +++E +FGVR+ EI++ Sbjct: 334 IKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 387 >gi|78485772|ref|YP_391697.1| Type III secretion system outer membrane O protein [Thiomicrospira crunogena XCL-2] gi|78364058|gb|ABB42023.1| Flagellar motor switch protein FliN [Thiomicrospira crunogena XCL-2] Length = 153 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 + EG D+P + +E +D + + + + + D+ Sbjct: 17 QAEAEGSDAAGDDP---WGAALSEQAAETSSNNSDEIDAASFDALEKGRGDSSEKVDLDV 73 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +++IPV +Q+ +G + I NL++ ++G VI +D+ GE +D+ +N IA GE+ ++ + Sbjct: 74 LLDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVIND 133 Query: 132 DDTHFGVRVIEILNAQ 147 FGVR+ ++++ Q Sbjct: 134 ---KFGVRLTDVVSPQ 146 >gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] Length = 370 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 13/157 (8%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNS------EMLIQKNDVDNISEPI 54 +KK+ ++ + ++ + P + N + IQKN V Sbjct: 210 FVKKLYRLLFGEEKKQASPQQQAQPSTPQQAPTTENENIQNVKMSENIQKNPVSVSPVQF 269 Query: 55 SSDSNNILEKST----DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S + + KST + +++IP+ + + LG + + ++ LS G +I LDK GE Sbjct: 270 QSFESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGE 329 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VDI +N + IA+GE+ +++E +FGVR+ EI++ Q Sbjct: 330 PVDIIVNGKLIARGEVVVIDE---NFGVRITEIVSPQ 363 >gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] Length = 389 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 74/135 (54%), Gaps = 6/135 (4%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 + +++ P ++ + + + V + + +S + ++ N D Sbjct: 251 VSEDINPTYQE--QPKEEWRRETNYLGNASVSSSPTVQE-AAFSNFESPTLSKQEHRNLD 307 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +++++P+K+ + LG IS++++LS G +I LDK GE VDI +N + +A+GE+ ++E Sbjct: 308 MLLDVPLKVTVELGRTKQSISDILDLSAGSIIELDKLAGEPVDILVNEKLVAEGEVVVIE 367 Query: 131 EDDTHFGVRVIEILN 145 E +FGVRV +I++ Sbjct: 368 E---NFGVRVTDIIS 379 >gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC 43541] gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC 43541] Length = 393 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 +P + P+SS + + N LI+++P+++ + LG Sbjct: 275 GYGAPPMQPHVASNVPVQSAQFTPLSSVPVQVND---ANIGLILDVPLQVNVELGRTKKS 331 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I ++++L+KG ++ LDK GE VDI +N + +AKGE+ +++E +FGVR+ EI++ Sbjct: 332 IKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 385 >gi|74317626|ref|YP_315366.1| flagellar motor switch/type III secretory pathway protein FliN [Thiobacillus denitrificans ATCC 25259] gi|74057121|gb|AAZ97561.1| flagellar motor switch/type III secretory pathway protein FliN [Thiobacillus denitrificans ATCC 25259] Length = 132 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + ++ D I++IPV + + LG + I NL+ L++G V+ LD GE +D+ Sbjct: 35 EFSGSASSTGLANDIDFILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDV 94 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA+GE+ ++ + FGVR+ +I+ Sbjct: 95 LVNGCLIAQGEVVVVND---KFGVRLTDIITP 123 >gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa] gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa] Length = 284 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + ++ D ++++P+ + + +G+ M I +L+ L +G V+ LDK GE ++I IN++ + Sbjct: 196 TSEPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLV 255 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 A+GE+ ++ + +GVR+ +I++ Sbjct: 256 ARGEVVMVND---KYGVRLTDIVSP 277 >gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM 16841] gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM 16841] Length = 379 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 6/132 (4%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNIL---EKSTDNFDLIM 73 G + P+ + + + Q +P + N +N LIM Sbjct: 251 GGQQVMGQPMMGQPMMGQPMMAPNMNQMYAQPVNVQPAQFQAFNPSIAQVAGAENIGLIM 310 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P+++ + LG I +++ + G +I L++ GE +DI +N + +AKGE+ ++EE Sbjct: 311 DVPLEVTVELGRTTKSIHEILDFAPGTIIELNRIAGEPIDILVNGKYVAKGEVVVIEES- 369 Query: 134 THFGVRVIEILN 145 FGVR+ EI+ Sbjct: 370 --FGVRITEIVK 379 >gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1] gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58] gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719] gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192] gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1] gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016] gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1] gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa UCBPP-PA14] gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719] gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192] gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58] gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016] Length = 157 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T +E + ++ S + I N D+I++IPV + + +G + I NL+ Sbjct: 43 TPVAEPSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 100 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 149 >gi|330445374|ref|ZP_08309026.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489565|dbj|GAA03523.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 129 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + + L ++ D + E ++ +S I + D IM+IPV + + +G Sbjct: 3 DNNDQQMADDWAAALAEQADDVQPAPLEELTDESTPITDDERRKLDTIMDIPVTISMEVG 62 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 63 RTQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 119 Query: 145 N 145 + Sbjct: 120 S 120 >gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella australiensis 50-1 BON] gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella australiensis 50-1 BON] Length = 366 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 65/96 (67%), Gaps = 5/96 (5%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + + +++++ +L+ S N +LIM+IP+++ + LG + +++ L G VI LD+ G Sbjct: 268 VFQQLNNEAPEVLQGS--NMNLIMDIPLQVTVELGRTKKTVKDILELGTGSVIELDRLAG 325 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 E +DI +N + +A+GE+ +++E +FGVR+IE+++ Sbjct: 326 EPIDILVNGKLVARGEVIVIDE---NFGVRIIEMID 358 >gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase [Carnobacterium sp. 17-4] gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase [Carnobacterium sp. 17-4] Length = 359 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 74/137 (54%), Gaps = 10/137 (7%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 I D ++ + P++ + ++ + ++ IQK + ++ S K+ N D Sbjct: 226 ITDRELPKAEEMTAPIEAVSQATSNADGKIGIQKPEFQELTHAGSL-------KTPRNLD 278 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LIM++P++ ++LG I ++++L G V+ L+K E ++I +N + IA+GE+ ++ Sbjct: 279 LIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVIN 338 Query: 131 EDDTHFGVRVIEILNAQ 147 E FG+R+ IL+ + Sbjct: 339 ES---FGIRITNILSKE 352 >gi|254491664|ref|ZP_05104843.1| flagellar motor switch protein FliN [Methylophaga thiooxidans DMS010] gi|224463142|gb|EEF79412.1| flagellar motor switch protein FliN [Methylophaga thiooxydans DMS010] Length = 155 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 Q + + + + P++ ++ + + D++M+IPV + + +G Sbjct: 30 AQQEDPWAEAMEEQAAAESTQQKANPAPVAQLDDDGKPRKDVDLDMVMDIPVTISMEIGR 89 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ LS+G V+ LD+ GE +D+ +N+ IA GE+ ++ + FG+R+ ++++ Sbjct: 90 TRISIRNLLQLSQGSVVELDRLAGEPMDVLVNDTLIAHGEVVVVND---KFGIRLTDVIS 146 Query: 146 A 146 A Sbjct: 147 A 147 >gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9] gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter italicus Ab9] Length = 375 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 3/95 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + + + + ++ +N +LI+++P+ + + LG I +++ LS+G +I LDK G Sbjct: 274 VFQSFDEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAG 333 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 E VDI N + IAKGE+ +++E +FGVR+I+I+ Sbjct: 334 EPVDILANGKYIAKGEVVVIDE---NFGVRIIDIV 365 >gi|82702482|ref|YP_412048.1| surface presentation of antigens (SPOA) protein [Nitrosospira multiformis ATCC 25196] gi|82410547|gb|ABB74656.1| Surface presentation of antigens (SPOA) protein [Nitrosospira multiformis ATCC 25196] Length = 151 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 M + ++ +P + E + + N + ++ DL+M+IPV Sbjct: 19 EEMKVSVTPANSAARTPADQDETIGAGETGSG--QIFEQFQNTQKVQIQNDIDLVMDIPV 76 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 ++ + LG + I NL+ L++G V+ LD GE +D+ +N IA+GE+ ++ E FG Sbjct: 77 QLTVQLGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVNE---KFG 133 Query: 138 VRVIEILNA 146 +R+ +I+ Sbjct: 134 IRLTDIITP 142 >gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4] Length = 392 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N DLIM++P+++ + LG I +++ + G +I L++ GE +D+ +N + +AKG Sbjct: 315 QPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKG 374 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++EE +G+R+ EI+ Sbjct: 375 EVVVIEES---YGIRITEIIK 392 >gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1] gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1] Length = 174 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + + + N D+I++IPV + + +G + I +L+ L++G V+ LD+ GE Sbjct: 75 DEFDPAATRAGGEDDQNIDVILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEP 134 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 135 LDVMVNGTLIAHGEVVVVNE---RFGIRLTDVISP 166 >gi|160896095|ref|YP_001561677.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1] gi|160361679|gb|ABX33292.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1] Length = 143 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 62/125 (49%), Gaps = 4/125 (3%) Query: 23 DNPLQDTNVSSPTNNS-EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81 D+P + + +++ ++ + ++ +++++IPV++ + Sbjct: 12 DDPFSGWAEALDEQRERDAKLEEEQGGPLTGEPVRPYAGGADVPVNDINMVLDIPVQLSV 71 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 LG + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ Sbjct: 72 ELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLT 128 Query: 142 EILNA 146 +++ Sbjct: 129 DVVTP 133 >gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. SMY] gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName: Full=CheY-P phosphatase FliY; AltName: Full=Flagellar motor switch protein FliY gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis] gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. subtilis str. 168] Length = 378 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIM 73 + + P + + +K +S E + D N ++ N D+++ Sbjct: 241 QPKEPVTPEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPNEAVQAPIHNLDMLL 300 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE Sbjct: 301 DIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE-- 358 Query: 134 THFGVRVIEILN 145 +FGVRV +IL+ Sbjct: 359 -NFGVRVTDILS 369 >gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 368 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 GR + + ++P L + D+ + N LIM++P Sbjct: 236 GRGQATPAAGRMMDGAAPAVPG--LSWGGNAAAARTQPGQDTMYRSPAISGNLGLIMDVP 293 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + + +G ++ +++N + G V+ LDK+ VDI +N Q IA+GE+ ++++ +F Sbjct: 294 LNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD---NF 350 Query: 137 GVRVIEILNAQ 147 GVR+ EI+N + Sbjct: 351 GVRITEIVNTR 361 >gi|288942629|ref|YP_003444869.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM 180] gi|288898001|gb|ADC63837.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM 180] Length = 148 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P S N ++++++PV + + +G + I NL+ L++G V+ LD+ GE + Sbjct: 50 PEDFSGFKPEPTSDVNLNMVLDVPVTISMEIGRTRIPIRNLLQLNQGSVVELDRLAGEPL 109 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 110 DVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 140 >gi|85859178|ref|YP_461380.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] gi|85722269|gb|ABC77212.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] Length = 163 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 ++ ++ V+ + D I++IP+ + + LG C M IS L+ L Sbjct: 50 AQSQVKTPKVEVSPADFKEIPAGPKMDPQLDLDFILDIPLTLSVELGRCRMLISELLQLG 109 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +G +I L K GE +D+ +N + IA+GE+ ++ E FG+R+ +I++ Sbjct: 110 QGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNE---KFGIRLTDIVSP 155 >gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus ATCC 12755] gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus ATCC 12755] Length = 352 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 21 HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ 80 P V++PT + + +S+P + DN DLI+++P+ + Sbjct: 225 ETPTPQPTAPVAAPTPEPAATSKPVE---VSKPAFQTLASSGVSDGDNLDLILDVPLDLS 281 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 ++LG I ++++ + G VI L+K E ++I +N + IA GE+ ++ E +FGVR+ Sbjct: 282 VVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVINE---NFGVRI 338 Query: 141 IEILNAQ 147 IL+ + Sbjct: 339 TNILSQK 345 >gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis L1-82] gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis L1-82] gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1] Length = 392 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N DLIM++P+++ + LG I +++ + G +I L++ GE +D+ +N + +AKG Sbjct: 315 QPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKG 374 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++EE +G+R+ EI+ Sbjct: 375 EVVVIEES---YGIRITEIIK 392 >gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa] Length = 157 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T +E + ++ S + I N D+I++IPV + + +G + I NL+ Sbjct: 43 TPVAESSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 100 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 149 >gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5] gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto BEST195] gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5] Length = 378 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIM 73 + + P + + +K +S E + D N ++ N D+++ Sbjct: 241 QPKEPVTPEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPNEAVQAPIHNLDMLL 300 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IP+ + + LG + ++ LS G +I LDK GE VDI +N + +AKGE+ ++EE Sbjct: 301 DIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEE-- 358 Query: 134 THFGVRVIEILN 145 +FGVRV +IL+ Sbjct: 359 -NFGVRVTDILS 369 >gi|303326579|ref|ZP_07357022.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3] gi|302864495|gb|EFL87426.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3] Length = 194 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGS 85 +D + S + D + ++ S + K D I++IP+ + LG Sbjct: 69 EDKSGPSTFGGAGAGGGGQTTDAHFKDMTEMSRQPRDNKLKRELDFILDIPLDVSAELGR 128 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I+ L+ L +G V+ L+K GE +++ +N + +A+GE ++ E FGVR+ +I++ Sbjct: 129 TRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVVINE---KFGVRLTDIIS 185 Query: 146 A 146 Sbjct: 186 P 186 >gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2] gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2] Length = 352 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 7/124 (5%) Query: 28 DTNVSSPTNNSEMLIQKNDVDN----ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83 +T PT + + + +S+P + DN DLI+++P+ + ++L Sbjct: 225 ETPTPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVNDGDNLDLILDVPLDLSVVL 284 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G I ++++ + G VI L+K E ++I +N + IA GE+ ++ E +FGVR+ I Sbjct: 285 GRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVINE---NFGVRITNI 341 Query: 144 LNAQ 147 L+ + Sbjct: 342 LSQK 345 >gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC 35243] gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC 35239] gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC 35243] gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC 35239] Length = 248 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 ++ +N ++ K + ++ + P +S ++ E+ ++ L+ ++ Sbjct: 115 SATLEAENSVEGWLSVREIAAGAAGAPKKEGESATTPPASQASATAEQRAESMKLLYDVE 174 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + +G + + ++++LS G VI LD+ G + D+ +N + IA GEI +++E+ + Sbjct: 175 MTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEIVVVDEE---Y 231 Query: 137 GVRVIEILN 145 G+R+ EI++ Sbjct: 232 GIRITEIVS 240 >gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC 15579] gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC 15579] Length = 390 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 + + ++ P Q+ P ++ EP+S +N DLI+++ Sbjct: 258 KKSAKAVEAPKQEIVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 313 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E + Sbjct: 314 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 370 Query: 136 FGVRVIEILNAQ 147 FGVR+ I+++Q Sbjct: 371 FGVRITNIVSSQ 382 >gi|88813209|ref|ZP_01128449.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] gi|88789531|gb|EAR20658.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] Length = 138 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + + S+ N N D+I+++PV + + LG + I NL+ L++G V+ LD+ GE Sbjct: 39 DKLDSEPGNAGTDEDVNLDVILDVPVTLSMELGRTQIDIRNLLQLNQGSVVELDRLAGEP 98 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N +A GE+ ++ E FG+R+ ++++ Sbjct: 99 LDVMVNGTLVAHGEVVVVNE---RFGIRLTDVVS 129 >gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC 43243] gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC 43243] Length = 197 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/99 (35%), Positives = 63/99 (63%), Gaps = 5/99 (5%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 +P + D + + +K +N DLIM++P+++ + LG I +++ + G +I L+K Sbjct: 104 AAFQPFAGDLSALSQK--ENIDLIMDVPLEVTVELGRTSKTIKDILEFAPGTIIELNKIA 161 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 GESVD+ +N + +AKGE+ ++EE +FGVR+ EI+ Q Sbjct: 162 GESVDVLVNGKNVAKGEVVVIEE---NFGVRITEIIKEQ 197 >gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16] gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16] Length = 248 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 67/129 (51%), Gaps = 3/129 (2%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 ++ +N ++ K + ++ + P +S + E+ ++ L+ ++ Sbjct: 115 SATLEAENSVEGWLSVREIAAGAAGAPKKEGESATTPPASQATATAEQRAESMKLLYDVE 174 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + +G + + ++++LS G VI LD+ G + D+ +N + IA GEI +++E+ + Sbjct: 175 MTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEIVVVDEE---Y 231 Query: 137 GVRVIEILN 145 G+R+ EI++ Sbjct: 232 GIRITEIVS 240 >gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7] gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7] Length = 360 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 3/146 (2%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61 ++ +SKI + + + + T +P N + ++ Sbjct: 211 VRNISKIVLADEGEVIQDRQLPQAEEMTAPIAPAANQPTQETAGKIGIQKPEFQELTHAG 270 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 K+ N DLIM++P++ ++LG I ++++L G V+ L+K E ++I +N + I Sbjct: 271 SLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLI 330 Query: 122 AKGEITIMEEDDTHFGVRVIEILNAQ 147 A+GE+ ++ E FG+R+ IL+ + Sbjct: 331 AEGEVVVINES---FGIRITNILSKE 353 >gi|319898626|ref|YP_004158719.1| flagellar motor switch protein fliY [Bartonella clarridgeiae 73] gi|319402590|emb|CBI76135.1| Flagellar motor switch protein fliY [Bartonella clarridgeiae 73] Length = 171 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 74/116 (63%) Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90 S P + NI + +++N ++ N +LIM+IPV++Q++LGS M + Sbjct: 56 GSKPGMPGSLGAGAAGKTNIGGLGAQNASNSTGDTSSNKELIMSIPVEVQVVLGSTTMPV 115 Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + FG+ + EI++ Sbjct: 116 ATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVLEDDPSRFGISLTEIIDK 171 >gi|90579935|ref|ZP_01235743.1| flagellar motor switch protein [Vibrio angustum S14] gi|90438820|gb|EAS64003.1| flagellar motor switch protein [Vibrio angustum S14] Length = 129 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 + + + + L ++ D + E ++ D+ I + D IM+IPV + + +G Sbjct: 4 NNDQQMADDWAAALAEQADDVQPAPLEELTDDTVAITDDERRKLDTIMDIPVTISMEVGR 63 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 64 TQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|298530626|ref|ZP_07018028.1| flagellar motor switch protein FliN [Desulfonatronospira thiodismutans ASO3-1] gi|298510000|gb|EFI33904.1| flagellar motor switch protein FliN [Desulfonatronospira thiodismutans ASO3-1] Length = 187 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 11/139 (7%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEM--------LIQKNDVDNISEPISSDSNNILEKSTD 67 E M D+ + + + E + + + ++ D+ E + Sbjct: 44 ESSEMSQDDLADEWAKALASEEEESFKDEQKQKSLSSQSKEAQFKDLTEDAKKKPEGTKR 103 Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + D I++IP+ + LG + I+ L+ L +G VI L+K GE +++ +N + +A+GE Sbjct: 104 DLDFILDIPLTVTAQLGGTQLLINELLQLGQGSVIELNKLAGEPMEVLVNGKLVARGEAV 163 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ +I++ Sbjct: 164 VINE---KFGIRLTDIISP 179 >gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf] gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657] gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf] gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str. 657] Length = 386 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 + + ++ P Q+ P ++ EP+S +N DLI+++ Sbjct: 254 KKPAKAVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E + Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366 Query: 136 FGVRVIEILNAQ 147 FGVR+ I+++Q Sbjct: 367 FGVRITSIVSSQ 378 >gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC 2916] gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC 2916] Length = 386 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 + + ++ P Q+ P ++ EP+S +N DLI+++ Sbjct: 254 KKPAKAVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E + Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366 Query: 136 FGVRVIEILNAQ 147 FGVR+ I+++Q Sbjct: 367 FGVRITSIVSSQ 378 >gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1] gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1] Length = 154 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 58 SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 117 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 118 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 146 >gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch Maree] gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str. Loch Maree] Length = 386 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 72/132 (54%), Gaps = 7/132 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 + + ++ P Q+ P ++ EP+S + +N DLI+++ Sbjct: 254 KKPAKAVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLSIRESATT--MPNNIDLILDV 309 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E + Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366 Query: 136 FGVRVIEILNAQ 147 FGVR+ I+++Q Sbjct: 367 FGVRITSIVSSQ 378 >gi|160880834|ref|YP_001559802.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium phytofermentans ISDg] gi|160429500|gb|ABX43063.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium phytofermentans ISDg] Length = 401 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 65/116 (56%), Gaps = 5/116 (4%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 +S M+ N +P + + +L+ T+N DL++++P+++ + LG Sbjct: 291 GMSMQQVPQGMVQNVNIAPAQFQPFVNTGSPLLQ--TENIDLLLDVPLEVTVELGRTSKS 348 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I +++ + G ++ L++ GE +D+ +N + +AKGE+ ++EE FG+RV +I+ Sbjct: 349 IREILDFAPGTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEA---FGIRVTDIIK 401 >gi|83647848|ref|YP_436283.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] gi|83635891|gb|ABC31858.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] Length = 172 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +D+ S ++ + D+I++IPV + + +G+ + I NL+ L++G VI L Sbjct: 65 DDIRAASFETFDETMPTSAPGAPDLDVILDIPVTISMEVGNTQIAIRNLLQLNQGSVIEL 124 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 125 DRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 163 >gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM 20603] gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM 20603] Length = 259 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCM 88 SP ++ + + +EP + S D L+ ++ + + + +G + Sbjct: 140 PSPAASARTAQAEPSAPSPTEPEIRPFTPPMMGSGTGDDKLRLLYDVEMTLTVEIGRAKL 199 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +++L+ G ++ LD+ G D+ +N +A+GE+ +++ED +G+RV EI++ Sbjct: 200 PVRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDED---YGLRVTEIIDT 254 >gi|90411031|ref|ZP_01219045.1| flagellar motor switch protein [Photobacterium profundum 3TCK] gi|90328244|gb|EAS44555.1| flagellar motor switch protein [Photobacterium profundum 3TCK] Length = 129 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 6/123 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISS---DSNNILEKSTDNFDLIMNIPVKMQII 82 + + + + L ++ P+ +S I + D IM+IPV + + Sbjct: 1 MSQNDQQMADDWAAALAEQTVDGAQPAPLEELVDESTPISDDERRKLDTIMDIPVTISME 60 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 +G + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ + Sbjct: 61 VGRTQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTD 117 Query: 143 ILN 145 +++ Sbjct: 118 VIS 120 >gi|218778862|ref|YP_002430180.1| flagellar motor switch protein FliN [Desulfatibacillum alkenivorans AK-01] gi|218760246|gb|ACL02712.1| Flagellar motor switch protein FliN [Desulfatibacillum alkenivorans AK-01] Length = 119 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 D I++IP+ + + LG M+I +L+ L +G V+ L K GE ++I +N + A+GE+ + Sbjct: 37 LDFILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVV 96 Query: 129 MEEDDTHFGVRVIEILNAQ 147 + E FGVR+ +I++ Q Sbjct: 97 VNE---KFGVRLTDIVSPQ 112 >gi|157961197|ref|YP_001501231.1| flagellar motor switch protein [Shewanella pealeana ATCC 700345] gi|157846197|gb|ABV86696.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] Length = 126 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 4/118 (3%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D+ +E I++ + E +SD + E+ D IM+IPV + + +G Sbjct: 4 DSGDDWAAAMAEQAIEEAKAVELDE-FNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSF 62 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 INIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117 >gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC 43531] gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC 43531] Length = 396 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 3/103 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 ++V S + S ++ + N LI+++P+++ + LG I +++L+KG ++ Sbjct: 289 ASNVPVQSAQFTPLSTVPVQVNDANIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVE 348 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LDK GE VDI +N + +AKGE+ +++E +FGVR+ EI++ Sbjct: 349 LDKLAGEPVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 388 >gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra] gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str. Okra] Length = 386 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 + + ++ P Q+ P ++ EP+S +N DLI+++ Sbjct: 254 KKPAKAVEAPKQEIVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E + Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366 Query: 136 FGVRVIEILNAQ 147 FGVR+ I+++Q Sbjct: 367 FGVRITSIVSSQ 378 >gi|330808226|ref|YP_004352688.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376334|gb|AEA67684.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 152 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 8/116 (6%) Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90 + ++ +Q + ++ + S+ + N D+I++IPV + + +GS + I Sbjct: 37 AADTGAHASSRLQMEEFGSVPK-----SHEPVTLDGPNLDVILDIPVSISMEVGSTDINI 91 Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 92 RNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVISP 144 >gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter hydrocarbonoclasticus] Length = 166 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + ++ DV + + D+I++IPV + + +G+ + I NL+ Sbjct: 49 GGDDQPEAERQDVRTAPMEEFGADQGAGGGESPDIDVILDIPVTISMEVGNTQIPIRNLL 108 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 109 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 157 >gi|167623387|ref|YP_001673681.1| flagellar motor switch protein [Shewanella halifaxensis HAW-EB4] gi|167353409|gb|ABZ76022.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] Length = 125 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 10/126 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 M D + ++ + ++ ++ N S P+S D D IM+IPV + Sbjct: 1 MSTDTDDWASAMAEQAIDEAKAVEFDEFSNESAPLSEDE-------VSKLDAIMDIPVTI 53 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R Sbjct: 54 SMEVGRSFINIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIR 110 Query: 140 VIEILN 145 + ++++ Sbjct: 111 LTDVIS 116 >gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str. ATCC 3502] gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC 19397] gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall] gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str. Kyoto] gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str. ATCC 3502] gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str. ATCC 19397] gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str. Hall] gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str. Kyoto] Length = 386 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 + + ++ P Q+ P ++ EP+S +N DLI+++ Sbjct: 254 KKPTKAVEAPKQEIVYEKPIEREAPKVEIKQAS--FEPLS--VRESATTMPNNIDLILDV 309 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E + Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366 Query: 136 FGVRVIEILNAQ 147 FGVR+ I+++Q Sbjct: 367 FGVRITSIVSSQ 378 >gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI] Length = 422 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 11/130 (8%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS--------TDNFDLIMNIPV 77 +D + P +E L + P + + + DLI++IP+ Sbjct: 288 FEDFSRPEPGKEAERLQGPPAWEQEIRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPL 347 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 K+ +ILG I +++ L+ G V+ L V E V++ +N +A GE+ ++ E +FG Sbjct: 348 KVTVILGRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNE---NFG 404 Query: 138 VRVIEILNAQ 147 VR+ I+ + Sbjct: 405 VRITSIIGPE 414 >gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str. Langeland] gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str. Langeland] gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str. 230613] Length = 386 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 + + ++ P Q+ P ++ EP+S +N DLI+++ Sbjct: 254 KKPAKAVEAPKQEMIYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E + Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366 Query: 136 FGVRVIEILNAQ 147 FGVR+ I+++Q Sbjct: 367 FGVRITSIVSSQ 378 >gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297] gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297] Length = 165 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 70/127 (55%), Gaps = 5/127 (3%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQ 80 D L D ++ + + +D ++ E S + + + N D+I++IPV + Sbjct: 35 DQALADEWAAAMEESGDADSDDSDDPQVAPLEQFDSTAGSEFNEDNPNLDVILDIPVTIS 94 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + +G+ + I NL+ L++G VI LD+ GE +D+ +N + IA GE+ ++ E FG+R+ Sbjct: 95 MEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVVMVNE---KFGIRL 151 Query: 141 IEILNAQ 147 ++++ Q Sbjct: 152 TDVVSQQ 158 >gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8] gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8] Length = 166 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + ++ DV + + D+I++IPV + + +G+ + I NL+ Sbjct: 49 GGDDQPEAERQDVRTAPMEEFGADQGPGGGESPDIDVILDIPVTISMEVGNTQIPIRNLL 108 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 109 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 157 >gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 408 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P ++ + D+ + + + ++ +N D+++++ +++ + LG +I + Sbjct: 295 PGMPPSSVVFQPDMQIATPQFQNFNQIVVPTGAENIDILLDVALEVSVELGRTKKKIREI 354 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ S+G +I LDK VGE +DI +N + IA GE+ +++E +FGVR+ I+ + Sbjct: 355 LDFSEGSIIELDKLVGEPIDILVNGKFIASGEVVVIDE---NFGVRIKSIIKPE 405 >gi|78358624|ref|YP_390073.1| surface presentation of antigens (SPOA) protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221029|gb|ABB40378.1| Surface presentation of antigens (SPOA) protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 175 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 3/93 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + D I++IP+ + LG + I+ L+ L +G V+ L+K GE ++ Sbjct: 78 TEEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLE 137 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I +N + +A+GE ++ E FGVR+ +I++ Sbjct: 138 IYVNGKLVARGEAVVINE---KFGVRLTDIISP 167 >gi|42524696|ref|NP_970076.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus HD100] gi|39576906|emb|CAE78135.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus HD100] Length = 122 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 S+ + N LI++IP+K+ + LG M +S L+NL++G VI L K GE +++ + Sbjct: 28 ASSEMPTHKDRNLSLILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYV 87 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N++ IA+GE ++ E FGVR+ +I++ Sbjct: 88 NDKLIARGEAVVVNE---KFGVRLTDIISP 114 >gi|330961231|gb|EGH61491.1| flagellar motor switch protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 153 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 58 PKSTGPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 117 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 118 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 145 >gi|237799246|ref|ZP_04587707.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022101|gb|EGI02158.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 153 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 128 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ ++++ Sbjct: 129 VVVNE---KFGIRLTDVISP 145 >gi|89075521|ref|ZP_01161932.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89048793|gb|EAR54364.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 129 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNIS--EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 + + + + L ++ D + E ++ ++ I + D IM+IPV + + +G Sbjct: 4 NNDQQMADDWAAALAEQADDVQPAPLEELTDETVPITDDERRKLDTIMDIPVTISMEVGR 63 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 64 TQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402 065] Length = 386 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 + + ++ P Q+ P ++ EP+S +N DLI+++ Sbjct: 254 KKPAKVVEAPKQEMVYEKPIEREAPKVEVKQAS--FEPLS--VRESATTMPNNIDLILDV 309 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ ++LG M + +++NL G +I LDK E V+I +N +K+A GE+ +++E + Sbjct: 310 PLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDE---N 366 Query: 136 FGVRVIEILNAQ 147 FGVR+ I+++Q Sbjct: 367 FGVRITSIVSSQ 378 >gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct] Length = 158 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 5/112 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T +E + ++ S + I N D+I++IPV + + +G + I NL+ Sbjct: 43 TPVAEPSTPRAPMEEFGA--SPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLL 100 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G VI LD+ GE +D+ +N IA GE+ + E FG+R+ ++++ Sbjct: 101 QLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVAVNE---KFGIRLTDVISP 149 >gi|127512305|ref|YP_001093502.1| flagellar motor switch protein [Shewanella loihica PV-4] gi|126637600|gb|ABO23243.1| flagellar motor switch protein FliN [Shewanella loihica PV-4] Length = 127 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +DT +E +++ + E ++ S + E+ D IM+IPV + + +G Sbjct: 4 EDTGDDWAAAMAEQALEEAQAVELDE-LADSSKPLTEEEAAKLDTIMDIPVTISMEVGRS 62 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 FINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC 35937] gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC 35937] Length = 112 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + FG+R+ ++++ Sbjct: 89 VIND---RFGIRLTDVVSP 104 >gi|302185373|ref|ZP_07262046.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae 642] Length = 152 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+ + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 57 PKSSGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144 >gi|218288307|ref|ZP_03492606.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius LAA1] gi|218241666|gb|EED08839.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius LAA1] Length = 381 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 Q N + +++ + E + + N L+ ++P+ + + LG Sbjct: 260 AQAANRGREDEGPSVAVRRPAFPDFDE----GATPRDARPVANLSLLYDVPLNVTVELGR 315 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I ++ L+ G ++ LDK GE VDI +N +KIA GE+ +++E +FGVRV +I+ Sbjct: 316 AKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAIGEVVVIDE---NFGVRVTDIVQ 372 Query: 146 A 146 A Sbjct: 373 A 373 >gi|28869174|ref|NP_791793.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato str. DC3000] gi|213967549|ref|ZP_03395697.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato T1] gi|301382886|ref|ZP_07231304.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato Max13] gi|302061096|ref|ZP_07252637.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato K40] gi|302131288|ref|ZP_07257278.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852414|gb|AAO55488.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato str. DC3000] gi|213927850|gb|EEB61397.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato T1] gi|330876027|gb|EGH10176.1| flagellar motor switch protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964685|gb|EGH64945.1| flagellar motor switch protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 152 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 57 PKSAGPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144 >gi|330953759|gb|EGH54019.1| flagellar motor switch protein [Pseudomonas syringae Cit 7] Length = 152 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 57 PKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144 >gi|66046675|ref|YP_236516.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae B728a] gi|289678974|ref|ZP_06499864.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae FF5] gi|63257382|gb|AAY38478.1| Surface presentation of antigens (SPOA) protein [Pseudomonas syringae pv. syringae B728a] gi|330899438|gb|EGH30857.1| flagellar motor switch protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940698|gb|EGH43709.1| flagellar motor switch protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330976006|gb|EGH76072.1| flagellar motor switch protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 152 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 57 PKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144 >gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium HP15] Length = 163 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 5/122 (4%) Query: 27 QDTNVSSPTNNSEMLIQKNDVD--NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 +D ++ E ++DV + E + ++ + D+I++IPV + + +G Sbjct: 36 EDEWAAAMAEAGETGEAEDDVQAAPMEEFETGSEPSMGGGPAPDIDVILDIPVTISMEVG 95 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ +++ Sbjct: 96 NTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVI 152 Query: 145 NA 146 + Sbjct: 153 SP 154 >gi|300113611|ref|YP_003760186.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113] gi|299539548|gb|ADJ27865.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113] Length = 153 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 10/131 (7%) Query: 23 DNPLQDTNVSSPTNNSEML---IQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNI 75 D P Q + E + ++K +V ++S P + +++ N +LI++I Sbjct: 18 DAPSQSQVGELDSGQEEKVTSEVKKEEVASMSGPQAVLEELEADPGNVTKDINLELILDI 77 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 PV M + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ E Sbjct: 78 PVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVVNE---K 134 Query: 136 FGVRVIEILNA 146 FG+R+ ++++A Sbjct: 135 FGIRLTDVISA 145 >gi|26991046|ref|NP_746471.1| flagellar motor switch protein [Pseudomonas putida KT2440] gi|24986078|gb|AAN69935.1|AE016632_6 flagellar motor switch protein FliN [Pseudomonas putida KT2440] Length = 161 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 65 SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 124 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 125 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 153 >gi|330972447|gb|EGH72513.1| flagellar motor switch protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 152 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 57 PKSTGPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144 >gi|71733965|ref|YP_275530.1| flagellar motor switch protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484905|ref|ZP_05638946.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629022|ref|ZP_06461976.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651612|ref|ZP_06482955.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487823|ref|ZP_07005863.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554518|gb|AAZ33729.1| flagellar motor switch protein FliN [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157548|gb|EFH98628.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325125|gb|EFW81194.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329384|gb|EFW85377.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330866456|gb|EGH01165.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889049|gb|EGH21710.1| flagellar motor switch protein [Pseudomonas syringae pv. mori str. 301020] gi|330986500|gb|EGH84603.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011075|gb|EGH91131.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 152 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 57 PKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVL 116 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 117 VNGTLIAHGEVVVVNE---KFGIRLTDVISP 144 >gi|5921671|gb|AAD56295.1| FliN [Pseudomonas putida] gi|313497807|gb|ADR59173.1| FliN [Pseudomonas putida BIRD-1] Length = 160 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 64 SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 123 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 124 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 152 >gi|331016993|gb|EGH97049.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 152 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 68 PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 127 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ ++++ Sbjct: 128 VVVNE---KFGIRLTDVISP 144 >gi|289208345|ref|YP_003460411.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix] gi|288943976|gb|ADC71675.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix] Length = 203 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 D L ++ + + + E + + +P ++ + N ++ Sbjct: 65 DELLNQAQASSSGSESADALMGAEKRERKHKPDPEAEPLKPEELAASAGMSAEDINLQMV 124 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 +++PV + + +G + I NL+ L++G V+ LD+ GE++D+ +N IA GE+ ++ E Sbjct: 125 LDVPVTISMEIGRSRIPIRNLLQLNQGSVVELDRLAGEALDVLVNGTLIAHGEVVVVNE- 183 Query: 133 DTHFGVRVIEILNA 146 FG+R+ ++++ Sbjct: 184 --KFGIRLTDVISP 195 >gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1] gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1] Length = 254 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 61/103 (59%), Gaps = 3/103 (2%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 K + ++ + P +S + E+ ++ L+ ++ + + +G + + ++++LS G VI Sbjct: 147 PKKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVI 206 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 LD+ G + D+ +N + IA GEI +++E+ +G+R+ EI++ Sbjct: 207 ELDRSAGSAADVMVNGRLIAHGEIVVVDEE---YGIRITEIVS 246 >gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae EF01-2] gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae EF01-2] Length = 163 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 N E+ ++ + +++IPV++ + LG + I ++ L++G V+ LD GE +D+ +N Sbjct: 70 NGGEQVINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGY 129 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146 IA+GE+ ++ + FG+R+ +++ Sbjct: 130 LIAQGEVVVVND---KFGIRLTDVVTP 153 >gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM 8271] gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM 8271] Length = 373 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +N DLI ++P+++ + LG I +++ L G V+ LD+ GE VD+ +N + IAK E Sbjct: 288 PNNLDLIFDVPLQVSVELGKANKTIKDILELGPGSVVELDRIAGEPVDMIVNGKLIAKCE 347 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + ++ E FG+R+ EI+N Sbjct: 348 VVVINET---FGIRITEIIN 364 >gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens 16/4] Length = 394 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 53/82 (64%), Gaps = 3/82 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + +N DLI+++P+ + + LG I ++++ + G +I L+K GE +D+ +N + +AKG Sbjct: 316 AQENIDLILDVPLDVTVELGRTNKTIQDILDFAPGTIIELNKIAGEPIDVLVNGKYVAKG 375 Query: 125 EITIMEEDDTHFGVRVIEILNA 146 E+ ++EE FGVR+ EI+ Sbjct: 376 EVVVIEES---FGVRITEIIKE 394 >gi|241763647|ref|ZP_04761697.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN] gi|241367122|gb|EER61488.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN] Length = 145 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 12/121 (9%) Query: 35 TNNSEMLIQKNDVDNISE------PISSDS---NNILEKSTDNFDLIMNIPVKMQIILGS 85 +E L ++ D+ P+S + + ++ ++ +++++IPV++ + LG Sbjct: 18 AGWAEALEEQKRSDDAPADAEQGGPLSGEPVRPFSSGGETVNDINMVLDIPVQLSVELGR 77 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I ++ L++G V+ LD GE +D+ +N IA+GE+ ++ + FG+R+ +++ Sbjct: 78 TKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND---KFGIRLTDVVT 134 Query: 146 A 146 Sbjct: 135 P 135 >gi|327481258|gb|AEA84568.1| flagellar motor switch protein [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D+I++IPV + + +GS + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ Sbjct: 76 PNLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEV 135 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ ++++ Sbjct: 136 VVVNE---KFGIRLTDVISP 152 >gi|313905142|ref|ZP_07838511.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Eubacterium cellulosolvens 6] gi|313470045|gb|EFR65378.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Eubacterium cellulosolvens 6] Length = 578 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 3/111 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 N + Q N + ++ P +D + E+ DN +++M +P+++ + +G I +++ Sbjct: 464 NQARAAKQNNTIRSLKSPQYTDVPDGGEEVDDNREMLMKVPMEISVEVGRTRKPIKDILE 523 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G ++ LDK GE D+ +N + IA G+I ++E+ +FG+R+ EILN Sbjct: 524 LTQGSLVVLDKMAGEQADLYVNGECIAHGDIVVVED---NFGIRITEILNK 571 >gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168] gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168] Length = 375 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 T + + + + +VD S N N +LI ++P+++ + LG Sbjct: 251 ASTTGQPVSGSANRVSAGEENVDVKRAQFPSFDNGNTAPLPQNMELIQDVPLEVTVRLGK 310 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M I +++L +G ++ L+K GE VD+ +N + IAKGE+ +++E +FG RV +I++ Sbjct: 311 TRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVVVIDE---NFGFRVKDIIS 367 Query: 146 A 146 Sbjct: 368 P 368 >gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 112 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + FG+R+ ++++ Sbjct: 89 VIND---RFGIRLTDVVSP 104 >gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 112 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + FG+R+ ++++ Sbjct: 89 VVND---RFGIRLTDVVSP 104 >gi|167034914|ref|YP_001670145.1| flagellar motor switch protein [Pseudomonas putida GB-1] gi|166861402|gb|ABY99809.1| flagellar motor switch protein FliN [Pseudomonas putida GB-1] Length = 154 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 58 SPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 117 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 118 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 146 >gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P phosphatase fliY) (Flagellar motor switch protein fliY) [NC10 bacterium 'Dutch sediment'] Length = 324 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%) Query: 26 LQDTNVSSPTNNSEMLIQ---KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 L +T+ + P N++ + + + P + + D+++++ +++ + Sbjct: 196 LPETDKAQPHNDTLVAKEDTVSATSASAQAPFVPLTGGERVGPNNGIDMLLDVNLQVSVE 255 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG +QI +++ L G ++ LDK+ G++VDI +N++ IAKGE+ I++E +FGVR+ Sbjct: 256 LGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEVIIIDE---NFGVRLTS 312 Query: 143 ILN 145 I + Sbjct: 313 ITS 315 >gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetohalobium arabaticum DSM 5501] gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetohalobium arabaticum DSM 5501] Length = 408 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 S + ++ VD S S E+ DLI ++P+++ + LG M I +++ L Sbjct: 296 SGAVSREESVDVQSVEFSQLGEGQTEQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELG 355 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G VI LDK GESVD+ +N + IAKGE+ +++E +FG RV +I++ Sbjct: 356 NGSVIELDKLAGESVDLLVNGKLIAKGEVVVIDE---NFGFRVTDIVSP 401 >gi|258511385|ref|YP_003184819.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478111|gb|ACV58430.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 381 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 Q N + +++ + E ++ + N L+ ++P+ + + LG Sbjct: 260 AQAANRGREDEGPSVAVRRPAFPDFDEGVT----PRDARPVANLSLLYDVPLNVTVELGR 315 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I ++ L+ G ++ LDK GE VDI +N +KIA GE+ +++E +FGVRV +I+ Sbjct: 316 AKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAIGEVVVIDE---NFGVRVTDIVQ 372 Query: 146 A 146 A Sbjct: 373 A 373 >gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 83 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 DLIM+IPVK+ + LG M I L+ L++G V+ LD GE +DI IN IA+GE+ ++ Sbjct: 1 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 60 Query: 130 EEDDTHFGVRVIEILNA 146 + +GVR+ +I+ Sbjct: 61 AD---KYGVRITDIITP 74 >gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1] gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1] Length = 153 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 61/112 (54%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + + V+ + ++ + + DLIM+IPV + + LG+ + I NL+ Sbjct: 37 EDEWAAAMSEQKVEPVKLETLTNPSVPSGGVGSDLDLIMDIPVVLSMELGNTEIAIRNLM 96 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G V+ LD+ GE +D+ +N IA GE+ ++ + +G+R+ ++++ Sbjct: 97 QLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVVVVND---KYGIRLTDVVSP 145 >gi|319405390|emb|CBI79009.1| Flagellar motor switch protein fliY [Bartonella sp. AR 15-3] Length = 170 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 3/133 (2%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIM 73 S PL +P + SS ++ + + + D N +LIM Sbjct: 38 PGSFGAGAPLSGAATPTPGAKPGAPAFGAGAAGKTTIGSSGASKVPQNAGDTSSNTELIM 97 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV++Q++LGS M +S L++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D Sbjct: 98 SIPVEVQVVLGSTTMPVSTLMDLGRGAVITLDKQIGDPIDIVVNGRVIARGEVIVLEDDP 157 Query: 134 THFGVRVIEILNA 146 + FGV + EI++ Sbjct: 158 SRFGVSLTEIIDK 170 >gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 112 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ Sbjct: 29 NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88 Query: 128 IMEEDDTHFGVRVIEILNA 146 ++ + FG+R+ ++++ Sbjct: 89 VIND---RFGIRLTDVVSP 104 >gi|120598258|ref|YP_962832.1| flagellar motor switch protein [Shewanella sp. W3-18-1] gi|146293664|ref|YP_001184088.1| flagellar motor switch protein [Shewanella putrefaciens CN-32] gi|120558351|gb|ABM24278.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] gi|145565354|gb|ABP76289.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] gi|319427063|gb|ADV55137.1| flagellar motor switch protein FliN [Shewanella putrefaciens 200] Length = 127 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +DT +E +++ + + E + DS I + D I++IPV + + +G Sbjct: 4 EDTGDDWAAAMAEQALEEANAVALDE-LVDDSQPISKADAAKLDTILDIPVTISMEVGRS 62 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121] gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121] Length = 150 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 5/112 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + +++ E ++ + DLIM+IPV + + LGS + I NL+ Sbjct: 36 DEWAAAMSEQDAKPVELEELTPSLGAP--DAPAGMDLIMDIPVTLSMELGSTSIAIRNLL 93 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G V+ LD+ GE +D+ +N IA GE+ ++ + +G+R+ ++++ Sbjct: 94 QLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVVND---KYGIRLTDVVSP 142 >gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. campestris str. B100] gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. campestris] Length = 112 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S + + + N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ Sbjct: 16 SLHAERDQDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDV 75 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ + FG+R+ ++++ Sbjct: 76 YVNGTLIAHGEVVVIND---RFGIRLTDVVSP 104 >gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12] gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12] Length = 106 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 3/100 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + + + E ++ DLI++IPV + + +G M I NL+ L++G ++ LD+ Sbjct: 2 AQDSAMEQPKQTTLPQEADSEKMDLILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDR 61 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G+ +D+ +N +A GE+ ++ + FGVR+ +I++ Sbjct: 62 LAGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 98 >gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118] gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118] Length = 112 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 6/99 (6%) Query: 51 SEPISSDSNNILEKSTD---NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + P + DS + N D+I+++PV + + +G + I NL+ L++G V+ L++ Sbjct: 9 ASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERG 68 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 69 AGEPLDVYVNGTLIAHGEVVVIND---RFGIRLTDVVSP 104 >gi|54294678|ref|YP_127093.1| flagellar motor switch protein FliN [Legionella pneumophila str. Lens] gi|53754510|emb|CAH15994.1| Flagellar motor switch protein FliN [Legionella pneumophila str. Lens] Length = 109 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 59/99 (59%), Gaps = 3/99 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 +N +E ++ + + + +LI++IPV + + +G M I NL+ L++G ++ LD+ Sbjct: 6 ENTTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 65 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G+ +D+ +N +A GE+ ++ + FGVR+ +I++ Sbjct: 66 AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 101 >gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC 19865] gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC 19865] Length = 112 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S L + N D+I+++PV + + +G + I NL+ L++G V+ L++ GE +D+ Sbjct: 16 SLQPERDLNATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDV 75 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ + FG+R+ ++++ Sbjct: 76 YVNGTLIAHGEVVVIND---RFGIRLTDVVSP 104 >gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp. indica ATCC 9039] gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp. indica ATCC 9039] Length = 109 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 61/91 (67%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++ + + N D I+ IPV +Q++LGS M +SNL+ L +G VI LD RVGE VDI Sbjct: 14 GETTTAKDLNNRNLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVIPLDHRVGEPVDIV 73 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + IA+GE+ ++E+D++ FGV + EI+ Sbjct: 74 VNGRVIARGEVVVVEDDNSRFGVSLTEIVGP 104 >gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis] gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis] Length = 150 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 S + + D+I++IPV++ + +G+ + I NL+ L++G VI LD+ GE +D+ + Sbjct: 56 ASARHQRNGSPDLDVILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLV 115 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N IA GE+ ++ E FG+R+ ++++ Sbjct: 116 NGTLIAHGEVVVVNE---KFGIRMTDVISP 142 >gi|170748132|ref|YP_001754392.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] gi|170654654|gb|ACB23709.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] Length = 130 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 2/125 (1%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81 + +P + + S ++ +E + S N D I+ IPV MQ+ Sbjct: 1 MSSPSEQPSTESGQGGGHSESLFTRIEAQAEGQRVHDERL--GSGRNLDSILRIPVLMQV 58 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +LGS M +SNL+ L +G ++ LD RVGE VD+ +N + IA+GE+ ++E+D++ FGV + Sbjct: 59 VLGSATMPVSNLMKLGRGAIVPLDHRVGEPVDVVVNGRVIARGEVVVVEDDNSRFGVSLT 118 Query: 142 EILNA 146 EI+ Sbjct: 119 EIVGP 123 >gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum BKT015925] gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum BKT015925] Length = 417 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 7/136 (5%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 +E + + + Q T + + V+ + + + N DL Sbjct: 281 SPKVEPKPVETYSQPQYTTAPQMQYTA----PQPQVNIQKASFAPLQEANINGAPQNIDL 336 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I+++P+++ ++LG I +++ L G +I LDK E V+I +N +KIA GE+ +++E Sbjct: 337 ILDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDE 396 Query: 132 DDTHFGVRVIEILNAQ 147 +FGVR++ I++ + Sbjct: 397 ---NFGVRIVNIVSGE 409 >gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107] gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107] Length = 133 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S + D+I++IPV + + +G + I NL+ L++G VI LD+ GE +D+ +N Sbjct: 40 PEPGKRNSNPDLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVN 99 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 IA GE+ ++ E FG+R+ ++++ Sbjct: 100 GTLIAHGEVVVVNE---KFGIRMTDVISP 125 >gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM 771] gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum acetoxidans DSM 771] Length = 572 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 11/150 (7%) Query: 6 SKISYIKDNLEGRSMH----IDNPLQDTNVSS--PTNNSEMLIQ--KNDVDNISEPISSD 57 ++ + LE + ++ P+ T + P N + +N S P Sbjct: 417 YEVGLLLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQSVPEERV 476 Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S + + D +LI+++P+ + ++LG I +++ L+ G V+ L V E V++ +N Sbjct: 477 SQTPADVNWDKINLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVN 536 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +A+GE+ ++ E +FGVR+ ++ Q Sbjct: 537 GTLVARGEVVVVNE---NFGVRITNVITPQ 563 >gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17] gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17] Length = 172 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 3/111 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 N + +KN+V S + K + + D+IM+IPV + + +G+ + I NL+ Sbjct: 56 NRDKKSDKKNNVRAAPMEEFSSDSVNTSKGSPDLDVIMDIPVTISMEVGNTMIPIRNLLQ 115 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G VI LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 116 LNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVND---KFGIRLTDVMSP 163 >gi|319409197|emb|CBI82841.1| Flagellar motor switch protein fliY [Bartonella schoenbuchensis R1] Length = 165 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 2/130 (1%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 G P T + T +S + + ++++ + N +LIM+IP Sbjct: 38 GAGASAQKPGMSTPGA--TASSGPAFTASAGKTVGSMGATNAQKNTNEVHSNPELIMSIP 95 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V++QI+LGS M ++NL++L +G VITLDK++G+ +DI +N + IA+GE+ ++E+D + F Sbjct: 96 VEVQIVLGSTTMPVANLMDLGRGSVITLDKQIGDPIDIIVNGRIIARGEVIVLEDDPSRF 155 Query: 137 GVRVIEILNA 146 GV + E++ Sbjct: 156 GVSLTEVMGK 165 >gi|86356303|ref|YP_468195.1| flagellar motor switch protein [Rhizobium etli CFN 42] gi|86280405|gb|ABC89468.1| flagellar motor switch protein [Rhizobium etli CFN 42] Length = 214 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 45/97 (46%), Positives = 73/97 (75%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S + S + T NF+LIM+IP+ +QI+LG+ MQ+S+L+NL++G I LDK++GE Sbjct: 116 SSSFEASSAPLGSALTSNFELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGE 175 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ + Sbjct: 176 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 212 >gi|77457774|ref|YP_347279.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] gi|77381777|gb|ABA73290.1| putative flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] Length = 152 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 12/136 (8%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 +++ E ID L +S +N + + V ++P++ D N D Sbjct: 21 LEETGEAGQADIDALLAADAGTSSSNRL-PMEEFGSVPKNNDPVTLDGP--------NLD 71 Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 +I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ Sbjct: 72 VILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVN 131 Query: 131 EDDTHFGVRVIEILNA 146 E FG+R+ ++++ Sbjct: 132 E---KFGIRLTDVISP 144 >gi|88858100|ref|ZP_01132742.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] gi|88819717|gb|EAR29530.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] Length = 131 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 4/126 (3%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 M D D ++ E+ Q +V + E +S+ I ++ D I++IPV + Sbjct: 1 MSDDQDTMDEWAAALAEADEVENQDVEVAEL-EELSNQPAEITQEEKRKLDTILDIPVTI 59 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R Sbjct: 60 SMEVGRSKISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIR 116 Query: 140 VIEILN 145 + ++++ Sbjct: 117 LTDVIS 122 >gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110] gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110] Length = 155 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 5/97 (5%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + +P+ + + S + + I+++PV++ LG + I +L+ LS+G V+ LD G Sbjct: 54 VFQPLQAMATGA--GSPVDVERILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAG 111 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +D+ IN IA+GE+ ++ E +G+R+ +I+ Sbjct: 112 QPLDVLINGYLIAQGEVVVVNE---KYGIRLTDIVTP 145 >gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1] gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1] Length = 411 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 ++ N DLI++IP+K+ +ILG I +++ ++ G V+ LD E VDI +N Sbjct: 316 TSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILVNG 375 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 +A GE+ ++ E +FG+R+ I++ Sbjct: 376 TLVATGEVVVVNE---NFGIRITNIISP 400 >gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea MMB-1] gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea MMB-1] Length = 150 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 12/140 (8%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKND-------VDNISEPISSDSNNILEKST-- 66 + +D+ L D ++ + + + + D + +P+ D Sbjct: 6 NPDAAGMDSELADEWAAAMSESGDEATEDVDDVWAEAMSEQEVKPVQFDELPATTDGAIS 65 Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + DLIM+IPV + + LG + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ Sbjct: 66 SDLDLIMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEV 125 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ + +G+R+ ++++ Sbjct: 126 VVVND---KYGIRLTDVVSP 142 >gi|85711034|ref|ZP_01042094.1| flagellar motor switch protein [Idiomarina baltica OS145] gi|85694947|gb|EAQ32885.1| flagellar motor switch protein [Idiomarina baltica OS145] Length = 140 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + + + S + + ++++ +E ++ ++ + D I++IPV + + Sbjct: 12 EAAMAEQAASEEGESGDNADKQSEGVRTAELEELNAESLDDGDKRKLDAILDIPVTISME 71 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 +G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ ++ + FG+R+ + Sbjct: 72 VGRSQISIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTD 128 Query: 143 ILN 145 +++ Sbjct: 129 VIS 131 >gi|114562368|ref|YP_749881.1| flagellar motor switch protein [Shewanella frigidimarina NCIMB 400] gi|114333661|gb|ABI71043.1| flagellar motor switch protein FliN [Shewanella frigidimarina NCIMB 400] Length = 127 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 4/119 (3%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +DT +E +++ + + E + DS I ++ D I++IPV + + +G Sbjct: 4 EDTGDDWAAAMAEQALEEAEHVELDE-LVDDSRPITKEEAAKLDGILDIPVTISMEVGRS 62 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC1989] gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC1989] Length = 150 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 67/135 (49%), Gaps = 3/135 (2%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 ++ + D+ + ++ + + D++ + + + DL Sbjct: 11 ENTENTEDVSADDDWAAAMQEQEVSENQESENQENADSLGFEEFDNDPTAGKAISPELDL 70 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I++IPV + + +GS + I NL+ L++G VI LD+ GE +++ +N IA GE+ ++ E Sbjct: 71 ILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPLNVLVNGTLIAHGEVVVVNE 130 Query: 132 DDTHFGVRVIEILNA 146 FG+R+ ++++ Sbjct: 131 ---KFGIRMTDVISP 142 >gi|170741400|ref|YP_001770055.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] gi|168195674|gb|ACA17621.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] Length = 125 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 62/107 (57%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + + ++ + N D ++ IPV +Q++LGS M ++NL+ L +G Sbjct: 13 SASHAEALFGTAATMAPPRAEETVGAGRNLDSVLRIPVLIQVVLGSATMPVANLMKLGRG 72 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ LD RVGE VDI +N + IA+GE+ ++EED++ FGV + EI+ Sbjct: 73 AIVPLDHRVGEPVDIMVNGRVIARGEVVVVEEDNSRFGVSLTEIVGP 119 >gi|307824487|ref|ZP_07654712.1| flagellar motor switch protein FliN [Methylobacter tundripaludum SV96] gi|307734471|gb|EFO05323.1| flagellar motor switch protein FliN [Methylobacter tundripaludum SV96] Length = 126 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 + + ++ N D+I+++PV + + +G + I NL+ L++G V+ Sbjct: 18 EAAAFQEFNNQFEDKKSSSSVGDEVNLDVILDVPVTISMEIGRTQINIRNLLQLNQGSVV 77 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 78 ELERFAGEPLDVLVNGTLIAHGEVVVIND---KFGIRLTDVISP 118 >gi|285018172|ref|YP_003375883.1| flagellar motor switch/type III secretory pathway protein flin [Xanthomonas albilineans GPE PC73] gi|283473390|emb|CBA15895.1| probable flagellar motor switch/type III secretory pathway protein flin [Xanthomonas albilineans] Length = 112 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 M + + ++ S + E + N D+I+++P+ + + +G + I NL+ L++G Sbjct: 1 MSQNETNQAEPAQFESLQQETVAETNDLNLDVILDVPITLSLEVGRSRIPIRNLLQLNQG 60 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 V+ L++ GE +D+ +N IA GE+ + + FGVR+ ++++ Sbjct: 61 SVVELERGAGEPLDVYVNGTLIAHGEVVTIND---RFGVRLTDVVSP 104 >gi|256158145|ref|ZP_05456061.1| Flagellar motor switch FliN protein [Brucella ceti M490/95/1] gi|256252904|ref|ZP_05458440.1| Flagellar motor switch FliN protein [Brucella ceti B1/94] gi|261219992|ref|ZP_05934273.1| flagellar motor switch protein FliN [Brucella ceti B1/94] gi|265996663|ref|ZP_06109220.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1] gi|260918576|gb|EEX85229.1| flagellar motor switch protein FliN [Brucella ceti B1/94] gi|262550960|gb|EEZ07121.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1] Length = 98 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 40/91 (43%), Positives = 61/91 (67%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + S N DLIM IPV +Q++LG M +S+L+ L +G VITLDK++G+ VDI Sbjct: 8 SHAARKKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIV 67 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + IA+GE+ ++E+D + FGV + EI+ Sbjct: 68 VNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 98 >gi|269961628|ref|ZP_06175990.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833669|gb|EEZ87766.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 136 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + S I +++ E + S I E D IM+IPV + + +G Sbjct: 10 ADEWAAALGEDPSAPSIDVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893] gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893] Length = 172 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + E + + + D+I++IPV + + +G+ + I NL+ L++G VI LD+ Sbjct: 67 AAPMEEFPEGSNFSQGTGPAPDLDVILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDR 126 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE +D+ +N IA GE+ ++ E FG+R+ ++++ Sbjct: 127 LAGEPLDVLVNGTLIAHGEVVMVNE---KFGIRLTDVISP 163 >gi|170722846|ref|YP_001750534.1| flagellar motor switch protein [Pseudomonas putida W619] gi|169760849|gb|ACA74165.1| flagellar motor switch protein FliN [Pseudomonas putida W619] Length = 154 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 70 PNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 129 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ ++++ Sbjct: 130 VVVNE---KFGIRLTDVISP 146 >gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] Length = 401 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 14/136 (10%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 + +E R+ + P++ P S +P+S + E N DL Sbjct: 272 QSQMEQRTPVYEKPIETNVNKQPVEVSRAS---------FQPLSGSQDT--EVVPKNIDL 320 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I+++P+++ ++LG I +++NL G +I LDK E V+I +N +K+A GE+ +++E Sbjct: 321 ILDVPLEISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVIDE 380 Query: 132 DDTHFGVRVIEILNAQ 147 +FGVR+ I++ + Sbjct: 381 ---NFGVRITGIVSNE 393 >gi|24374732|ref|NP_718775.1| flagellar motor switch protein [Shewanella oneidensis MR-1] gi|24349392|gb|AAN56219.1|AE015759_11 flagellar motor switch protein FliN [Shewanella oneidensis MR-1] Length = 124 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 32 SSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 S+ + + + ++ + + + + DS I + D I++IPV + + +G + Sbjct: 2 STDDDWAAAMAEQALEEANAVGLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSFI 61 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 62 SIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115 >gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Halanaerobium praevalens DSM 2228] Length = 417 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 3/104 (2%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 + VD S + +N +LI ++P+++ + LG M+I ++++L G +I Sbjct: 310 SEEKVDVQSAQFPEFDQTATQPLPNNMELIKDVPLEVTVRLGKTVMKIRDILDLGDGSII 369 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LDK GE VD+ +N + +AKGE+ +++E +FG RV +I++ Sbjct: 370 ELDKLAGEPVDLLVNGKLVAKGEVVVIDE---NFGFRVKDIISP 410 >gi|262393596|ref|YP_003285450.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] gi|262337190|gb|ACY50985.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] Length = 136 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + S + ++V E + S+ I E D IM+IPV + + +G Sbjct: 10 ADEWAAALGEDPSAPSVDVDEVLAAPLEELKDTSSPITEDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|91223553|ref|ZP_01258818.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269965695|ref|ZP_06179808.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91191639|gb|EAS77903.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269829763|gb|EEZ83999.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 136 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + S + ++V E + S+ I E D IM+IPV + + +G Sbjct: 10 ADEWAAALGEDPSAPSVDVDEVLAAPLEELKDTSSPISEDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|91792692|ref|YP_562343.1| flagellar motor switch protein [Shewanella denitrificans OS217] gi|91714694|gb|ABE54620.1| Flagellar motor switch FliN [Shewanella denitrificans OS217] Length = 127 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +DT +E I++ + E + DS I ++ D I++IPV + + +G Sbjct: 4 EDTGDDWAAAMAEQAIEEAQQIELDE-LVDDSRPITKEEAAKLDSILDIPVTISMEVGRS 62 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|113969633|ref|YP_733426.1| flagellar motor switch protein [Shewanella sp. MR-4] gi|114046863|ref|YP_737413.1| flagellar motor switch protein [Shewanella sp. MR-7] gi|113884317|gb|ABI38369.1| flagellar motor switch protein FliN [Shewanella sp. MR-4] gi|113888305|gb|ABI42356.1| flagellar motor switch protein FliN [Shewanella sp. MR-7] Length = 124 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 32 SSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 S+ + + + ++ + + + + DS I + D I++IPV + + +G + Sbjct: 2 STDDDWAAAMAEQALEEANAIDLDELVDDSQPISKAEAAKLDTILDIPVTISMEVGRSYI 61 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 62 SIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115 >gi|269103168|ref|ZP_06155865.1| flagellar motor switch protein FliN [Photobacterium damselae subsp. damselae CIP 102761] gi|268163066|gb|EEZ41562.1| flagellar motor switch protein FliN [Photobacterium damselae subsp. damselae CIP 102761] Length = 128 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E ++ DS + + D I++IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 29 EELTDDSAPVSDDERRKLDSILDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRVAGES 88 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 89 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 119 >gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str. Alaska E43] gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str. Alaska E43] gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 383 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 73/139 (52%), Gaps = 5/139 (3%) Query: 7 KISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66 K+ K ++ + + +++ + P + + Q +V + + + Sbjct: 241 KVVEEKPVVKATTQKAEAEKRESIQAKPIVEAPRVQQPIEVHEAA--FETLVPGDTAQVP 298 Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N DLI+++P+ + ++LG I +++NLS G +I LDK E V+I +N +KIA GE+ Sbjct: 299 KNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEV 358 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E +FGVR+ I++ Sbjct: 359 VVVDE---NFGVRITSIVS 374 >gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str. Corby] gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str. Corby] Length = 109 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 58/99 (58%), Gaps = 3/99 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +E ++ + + + +LI++IPV + + +G M I NL+ L++G ++ LD+ Sbjct: 6 ETSAEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 65 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G+ +D+ +N +A GE+ ++ + FGVR+ +I++ Sbjct: 66 AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 101 >gi|312962265|ref|ZP_07776757.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens WH6] gi|311283602|gb|EFQ62191.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens WH6] Length = 155 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 71 PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ ++++ Sbjct: 131 VVVNE---KFGIRLTDVISP 147 >gi|86146128|ref|ZP_01064454.1| flagellar motor switch protein [Vibrio sp. MED222] gi|148976421|ref|ZP_01813127.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|218708831|ref|YP_002416452.1| flagellar motor switch protein [Vibrio splendidus LGP32] gi|85836075|gb|EAQ54207.1| flagellar motor switch protein [Vibrio sp. MED222] gi|145964244|gb|EDK29500.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|218321850|emb|CAV17825.1| Flagellar motor switch protein fliN [Vibrio splendidus LGP32] Length = 136 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + S I +DV + ++ S+ I E D IM+IPV + + +G Sbjct: 10 ADEWAAALGEDPSAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|254503358|ref|ZP_05115509.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] gi|222439429|gb|EEE46108.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] Length = 130 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 46/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIIL 83 + D V + + I+ D N + + D N + D N D I+ IPV +Q++L Sbjct: 1 MSDKIVENVDVETGATIKTADAANFARVEAPDKKNAGDTMGDDRNLDTILGIPVNIQVVL 60 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 GS M +SNL+ L +G VI L+ RVGE +DI +N + IA+GE+ ++E+D++ FGV + EI Sbjct: 61 GSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVVEDDNSRFGVSLTEI 120 Query: 144 LNAQ 147 +++Q Sbjct: 121 ISSQ 124 >gi|126175120|ref|YP_001051269.1| flagellar motor switch protein [Shewanella baltica OS155] gi|153001444|ref|YP_001367125.1| flagellar motor switch protein [Shewanella baltica OS185] gi|160876169|ref|YP_001555485.1| flagellar motor switch protein [Shewanella baltica OS195] gi|217972624|ref|YP_002357375.1| flagellar motor switch protein [Shewanella baltica OS223] gi|304409951|ref|ZP_07391570.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|307302336|ref|ZP_07582094.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|125998325|gb|ABN62400.1| flagellar motor switch protein FliN [Shewanella baltica OS155] gi|151366062|gb|ABS09062.1| flagellar motor switch protein FliN [Shewanella baltica OS185] gi|160861691|gb|ABX50225.1| flagellar motor switch protein FliN [Shewanella baltica OS195] gi|217497759|gb|ACK45952.1| flagellar motor switch protein FliN [Shewanella baltica OS223] gi|304351360|gb|EFM15759.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|306914374|gb|EFN44795.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|315268365|gb|ADT95218.1| flagellar motor switch protein FliN [Shewanella baltica OS678] Length = 126 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 DT+ + + L + N ++ + + DS I + D I++IPV + + +G Sbjct: 4 DDTDDWAAAMAEQALEEANAIE--LDELVDDSRPITKAEAAKLDTILDIPVTISMEVGRS 61 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 62 YISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 117 >gi|332305667|ref|YP_004433518.1| flagellar motor switch protein FliN [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172996|gb|AEE22250.1| flagellar motor switch protein FliN [Glaciecola agarilytica 4H-3-7+YE-5] Length = 131 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 4/126 (3%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 M + L D + E + + D + I D I++IPV + Sbjct: 1 MSEEEGLDDWAAAMAEQADEENKDAAATVADFDELEEDKD-ITPAEKRKLDTILDIPVTI 59 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R Sbjct: 60 SMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIR 116 Query: 140 VIEILN 145 + ++++ Sbjct: 117 LTDVIS 122 >gi|28899015|ref|NP_798620.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836941|ref|ZP_01989608.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|260365239|ref|ZP_05777796.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030] gi|260878789|ref|ZP_05891144.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AN-5034] gi|260897384|ref|ZP_05905880.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus Peru-466] gi|260899943|ref|ZP_05908338.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AQ4037] gi|4322005|gb|AAD15908.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus] gi|28807234|dbj|BAC60504.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus RIMD 2210633] gi|149749714|gb|EDM60459.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|308088279|gb|EFO37974.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus Peru-466] gi|308094260|gb|EFO43955.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AN-5034] gi|308107230|gb|EFO44770.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus AQ4037] gi|308115407|gb|EFO52947.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030] gi|328474448|gb|EGF45253.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329] Length = 136 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + S I ++V E + S I + D IM+IPV + + +G Sbjct: 10 ADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSRPITDDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|52842018|ref|YP_095817.1| flagellar motor switch protein FliN [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|296107382|ref|YP_003619082.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila 2300/99 Alcoy] gi|52629129|gb|AAU27870.1| flagellar motor switch protein FliN [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|295649283|gb|ADG25130.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila 2300/99 Alcoy] gi|307610491|emb|CBX00063.1| flagellar motor switch protein FliN [Legionella pneumophila 130b] Length = 109 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 58/99 (58%), Gaps = 3/99 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +E ++ + + + +LI++IPV + + +G M I NL+ L++G ++ LD+ Sbjct: 6 ETSTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 65 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G+ +D+ +N +A GE+ ++ + FGVR+ +I++ Sbjct: 66 AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 101 >gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein gi|71042011|pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein Length = 87 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +D +L+++IP+K+ + LG M + ++ + G +I LDK GE VDI +N + IA+GE Sbjct: 1 SDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGE 60 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + +++E +FGVR+ EI++ + Sbjct: 61 VVVIDE---NFGVRITEIVSPK 79 >gi|153834118|ref|ZP_01986785.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|156975422|ref|YP_001446329.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116] gi|148869488|gb|EDL68486.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|156527016|gb|ABU72102.1| hypothetical protein VIBHAR_03153 [Vibrio harveyi ATCC BAA-1116] Length = 136 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + S I ++V E + S+ I + D IM+IPV + + +G Sbjct: 10 ADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSSPITDDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|121602197|ref|YP_989410.1| flagellar motor switch protein fliY [Bartonella bacilliformis KC583] gi|120614374|gb|ABM44975.1| flagellar motor switch protein fliY [Bartonella bacilliformis KC583] Length = 139 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 38/92 (41%), Positives = 69/92 (75%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 SS + +++N +L+M+IPV++QI+LGS M ++NL+NL +G VITL+K++G+ +DI Sbjct: 48 SSKTQENTNDASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDI 107 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + IA+GE+ ++E+D + FGV + E+++ Sbjct: 108 VVNGRIIARGEVIVLEDDSSRFGVSLTEVIDK 139 >gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ethanoligenens harbinense YUAN-3] gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ethanoligenens harbinense YUAN-3] Length = 374 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P + + + +NF+LI +P+ + + +G + +++ + G +I LDK+ G+ V Sbjct: 280 PQFAPQPVLSHEEQNNFELIQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPV 339 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 DI +N Q IA+GE+ +++E +FGVR+ EI+ Q Sbjct: 340 DIIVNGQLIAQGEVVVIDE---NFGVRITEIIGKQ 371 >gi|70729041|ref|YP_258775.1| flagellar motor switch protein [Pseudomonas fluorescens Pf-5] gi|68343340|gb|AAY90946.1| flagellar motor switch protein FliN [Pseudomonas fluorescens Pf-5] Length = 153 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 69 PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 128 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ ++++ Sbjct: 129 VVVNE---KFGIRLTDVISP 145 >gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614] gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614] Length = 246 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 PL+ ++V + E L+ D + P +S + ++ +++ + +++ + +G Sbjct: 126 PLEGSDVVAALLVPEALLAHPADDTPALPTTSAAAPTGDR--RGIEMLHGVDMEVTVEIG 183 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 M + L++L+ G V+ LD+ G D+ +N + IA+GE+ +++ED FG+R+ EI+ Sbjct: 184 RARMTVRELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDED---FGLRITEIV 240 Query: 145 N 145 Sbjct: 241 T 241 >gi|117618193|ref|YP_855912.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559600|gb|ABK36548.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 130 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 + L ++ + P+ D I + D I++IPV + + +G + I N Sbjct: 12 DAWAAALEEQVTAEAKPAPLEELKDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 71 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 72 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121 >gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88] gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88] Length = 416 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 5/139 (3%) Query: 9 SYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD--SNNILEKST 66 + L + + SPT + E + + E I + E+ Sbjct: 270 ITGGEELSKTQVEMQREQATYTNESPTYHRETPRVQEKPIEVQEAIFQPLQQTSKGEELP 329 Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N DLIM++P+ + ++LG + I ++NL G +I LDK E V+I +N + +A GE+ Sbjct: 330 RNIDLIMDVPLDISVVLGRTKLNIKEILNLGTGSLIELDKLAEEPVEILVNGKPVAFGEV 389 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E +FGVR+ +I+N Sbjct: 390 VVIDE---NFGVRITDIVN 405 >gi|157376190|ref|YP_001474790.1| flagellar motor switch protein [Shewanella sediminis HAW-EB3] gi|157318564|gb|ABV37662.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] Length = 127 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +DT +E I++ + E ++ + + E+ D IM+IPV + + +G Sbjct: 4 EDTGDDWAEAMAEQAIEEAQAVELDE-LTDTAAALSEEDVAKLDSIMDIPVTISMEVGRS 62 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|104782810|ref|YP_609308.1| flagellar motor switch protein [Pseudomonas entomophila L48] gi|95111797|emb|CAK16521.1| flagellar motor switch protein FliN [Pseudomonas entomophila L48] Length = 154 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S N + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ Sbjct: 58 SPKLNENVSLEGPNLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDV 117 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N IA GE+ ++ E FG+R+ ++++ Sbjct: 118 LVNGTLIAHGEVVVVNE---KFGIRLTDVISP 146 >gi|109899344|ref|YP_662599.1| flagellar motor switch protein [Pseudoalteromonas atlantica T6c] gi|109701625|gb|ABG41545.1| flagellar motor switch protein FliN [Pseudoalteromonas atlantica T6c] Length = 131 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 4/126 (3%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 M + L D + E N + + D I D I++IPV + Sbjct: 1 MSEEEGLDDWAAAMAEQADEESKDGNATVAEYDELEEDKE-ISPAEKRKLDTILDIPVTI 59 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R Sbjct: 60 SMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIR 116 Query: 140 VIEILN 145 + ++++ Sbjct: 117 LTDVIS 122 >gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C str. Eklund] gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C str. Eklund] Length = 388 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 7/123 (5%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 P S P +S + V+ + + + + N DLI+++P+++ ++LG Sbjct: 265 PKPVETYSQPQVSS----PQPQVNIQKATFAPLGESPINGAPQNIDLILDVPLEISVVLG 320 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 I ++ L G +I LDK E V+I +N +KIA GE+ +++E +FGVR++ I+ Sbjct: 321 KTKKSIKEVLELGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDE---NFGVRIMNIV 377 Query: 145 NAQ 147 + + Sbjct: 378 SGE 380 >gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp] gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] Length = 155 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 71 PNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ ++++ Sbjct: 131 VVVNE---KFGIRLTDVISP 147 >gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str. Paris] gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str. Paris] Length = 111 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 9/99 (9%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 N P++ DS N + +LI++IPV + + +G M I NL+ L++G ++ LD+ Sbjct: 14 QNQGNPLNPDSGN------EKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRL 67 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G+ +D+ +N +A GE+ ++ + FGVR+ +I++ Sbjct: 68 AGDPLDVLVNGTLVAHGEVVVVND---KFGVRLTDIVSK 103 >gi|119775424|ref|YP_928164.1| flagellar motor switch protein [Shewanella amazonensis SB2B] gi|119767924|gb|ABM00495.1| flagellar motor switch protein FliN [Shewanella amazonensis SB2B] Length = 124 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + ++ + + D I++IPV + + +G + I NL+ L++G V+ LD+ GE +D Sbjct: 27 LKDETKPLSSEEAAKLDAILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLD 86 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +N IA GE+ ++ + FG+R+ ++++ Sbjct: 87 VMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115 >gi|311992319|gb|ADQ26733.1| flagellar motor switch protein [Aeromonas hydrophila] Length = 129 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 + L ++ + P+ D I + D I++IPV + + +G + I N Sbjct: 11 DAWAAALEEQVTAEAKPAPLEELKDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 70 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 71 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|330828807|ref|YP_004391759.1| flagellar motor switch phosphatase FliY [Aeromonas veronii B565] gi|328803943|gb|AEB49142.1| Flagellar motor switch phosphatase FliY [Aeromonas veronii B565] Length = 130 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 + L ++ + P+ D I + D I++IPV + + +G + I N Sbjct: 12 DAWAAALEEQVTAEAKPAPLEELKDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 71 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 72 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121 >gi|27365288|ref|NP_760816.1| flagellar motor switch protein [Vibrio vulnificus CMCP6] gi|37680657|ref|NP_935266.1| flagellar motor switch protein [Vibrio vulnificus YJ016] gi|320155672|ref|YP_004188051.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O] gi|27361435|gb|AAO10343.1| Flagellar motor switch protein fliN [Vibrio vulnificus CMCP6] gi|37199406|dbj|BAC95237.1| polar flagellar switch protein FliN [Vibrio vulnificus YJ016] gi|319930984|gb|ADV85848.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O] Length = 136 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 35 TNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90 + + DVD + E + S I D IM+IPV + + +G + I Sbjct: 16 ALGEDPAAPEIDVDEVLAAPLEELKDTSAPITADERRKLDTIMDIPVTISMEVGRSQISI 75 Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 76 RNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D str. 1873] gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D str. 1873] Length = 394 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 + P + V+ + + + + N DLI+++P+++ ++LG Sbjct: 269 SSNSQVEPKPVETYTKSQPQVNIQKASFAPLQESNINGAPQNIDLILDVPLEISVVLGKT 328 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I +++ L G +I LDK E V+I +N +KIA GE+ +++E +FGVR++ I++ Sbjct: 329 KKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDE---NFGVRIVNIVSG 385 Query: 147 Q 147 + Sbjct: 386 E 386 >gi|117919798|ref|YP_868990.1| flagellar motor switch protein [Shewanella sp. ANA-3] gi|117612130|gb|ABK47584.1| flagellar motor switch protein FliN [Shewanella sp. ANA-3] Length = 124 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 32 SSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 S+ + + + ++ + + + + +S I + D I++IPV + + +G + Sbjct: 2 STDDDWAAAMAEQALEEANAIDLDELVDESQPISKAEAAKLDTILDIPVTISMEVGRSYI 61 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 62 SIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 115 >gi|229591842|ref|YP_002873961.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25] gi|229363708|emb|CAY51093.1| probable flagellar motor switch protein [Pseudomonas fluorescens SBW25] Length = 155 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 N+ + N D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N Sbjct: 63 NDPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNG 122 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 IA GE+ ++ E FG+R+ ++++ Sbjct: 123 TLIAHGEVVVVNE---KFGIRLTDVISP 147 >gi|163801853|ref|ZP_02195750.1| flagellar motor switch protein [Vibrio sp. AND4] gi|159174361|gb|EDP59165.1| flagellar motor switch protein [Vibrio sp. AND4] Length = 136 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + S I ++V E + S+ I + D IM+IPV + + +G Sbjct: 10 ADEWAAALGEDPSAPSIDVDEVLAAPLEELKDTSSPITDDERRKLDSIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas maltophilia K279a] gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14] gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas maltophilia K279a] gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14] Length = 111 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 + ++ SS + N D+I+++PV + + +G + I NL+ L++G V+ L Sbjct: 5 DALEPTPAQFSSLQADEANGPDLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGSVVEL 64 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ GES+D+ +N IA GE+ ++ + FGVR+ ++++ Sbjct: 65 ERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVSP 103 >gi|332994113|gb|AEF04168.1| flagellar motor switch protein [Alteromonas sp. SN2] Length = 133 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 + ++ + +DV +D I ++ D I++IPV + + +G + I Sbjct: 14 AEQADSEADDQENDDVQVAELDELTDDTPITQEEKKKLDTILDIPVTISMEVGRSQISIR 73 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 74 NLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 124 >gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 397 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 ++V S + S ++ + N LI+++P+++ + LG I +++L+KG ++ Sbjct: 290 ASNVPVQSAQFTPLSTVPVQVNDANIGLILDVPLQVNVELGRTKKSIKEILDLTKGSIVE 349 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LDK GE+VDI +N + +AKGE+ +++E +FGVR+ EI++ Sbjct: 350 LDKLAGETVDIMVNGKYLAKGEVVVIDE---NFGVRITEIVSP 389 >gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium sticklandii DSM 519] gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium sticklandii] Length = 383 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 56/91 (61%), Gaps = 3/91 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 N +N DLI ++ +K+ + LG I +++ + G ++ LD+ VGE +DI + Sbjct: 290 SPNKRTGNVPENIDLIKDVLLKVTVELGRTTKPIDDILQFTPGSILELDRLVGEPLDIMV 349 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 N +K+AKGE+ +++E ++G+R+ +I+ A+ Sbjct: 350 NGKKVAKGEVVVIDE---NYGIRITDIIKAE 377 >gi|163750542|ref|ZP_02157780.1| flagellar motor switch protein [Shewanella benthica KT99] gi|161329697|gb|EDQ00686.1| flagellar motor switch protein [Shewanella benthica KT99] Length = 127 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +DT +E I++ + E ++ +S FD IM+IPV + + +G Sbjct: 4 EDTGDDWAAAMAEQAIEEAQAVELDE-LTDESQVFPADEAVKFDTIMDIPVTISMEVGRS 62 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 FISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|84388119|ref|ZP_00991015.1| flagellar motor switch protein [Vibrio splendidus 12B01] gi|84377186|gb|EAP94056.1| flagellar motor switch protein [Vibrio splendidus 12B01] Length = 136 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 10/129 (7%) Query: 24 NPLQDTNVS---SPTNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIP 76 P +D ++ + + L DVD++ + ++ S+ I E D IM+IP Sbjct: 2 EPSEDQKLADEWAAALGEDPLAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIP 61 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V + + +G + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + F Sbjct: 62 VTISMEVGRSQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KF 118 Query: 137 GVRVIEILN 145 G+R+ ++++ Sbjct: 119 GIRLTDVIS 127 >gi|269836615|ref|YP_003318843.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM 20745] gi|269785878|gb|ACZ38021.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM 20745] Length = 144 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 13/131 (9%) Query: 20 MHIDNPLQDTNVSSPTNNS---EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P ++P + + +S+ S + + + ++ Sbjct: 18 QSFDRPEGTGETAAPGEQAGGEAASVHPAAFMALSQETQS-------GGPQSIEFLRDVE 70 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V++ LG+ MQI +++ L G V+ L++ GE VDI +N IA+GE+ +++E F Sbjct: 71 VELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDE---KF 127 Query: 137 GVRVIEILNAQ 147 VRV+EI+ + Sbjct: 128 AVRVVEIVPPE 138 >gi|15642124|ref|NP_231756.1| flagellar motor switch protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727203|ref|ZP_01680370.1| flagellar motor switch protein FliN [Vibrio cholerae V52] gi|153213272|ref|ZP_01948684.1| flagellar motor switch protein FliN [Vibrio cholerae 1587] gi|153803022|ref|ZP_01957608.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3] gi|153818985|ref|ZP_01971652.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457] gi|153822883|ref|ZP_01975550.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|153828628|ref|ZP_01981295.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39] gi|227082250|ref|YP_002810801.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2] gi|254291361|ref|ZP_04962154.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226] gi|254849210|ref|ZP_05238560.1| flagellar motor switch protein FliN [Vibrio cholerae MO10] gi|297582023|ref|ZP_06943942.1| flagellar motor switch protein FliN [Vibrio cholerae RC385] gi|298497853|ref|ZP_07007660.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757] gi|9656675|gb|AAF95270.1| flagellar motor switch protein FliN [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630448|gb|EAX62841.1| flagellar motor switch protein FliN [Vibrio cholerae V52] gi|124116072|gb|EAY34892.1| flagellar motor switch protein FliN [Vibrio cholerae 1587] gi|124121420|gb|EAY40163.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3] gi|126510480|gb|EAZ73074.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457] gi|126519579|gb|EAZ76802.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|148875899|gb|EDL74034.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39] gi|150422691|gb|EDN14645.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226] gi|227010138|gb|ACP06350.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2] gi|254844915|gb|EET23329.1| flagellar motor switch protein FliN [Vibrio cholerae MO10] gi|297533718|gb|EFH72560.1| flagellar motor switch protein FliN [Vibrio cholerae RC385] gi|297542186|gb|EFH78236.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757] Length = 138 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 ++ + + + I +++ E + + + I + D IM+IPV + + +G Sbjct: 12 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 71 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 72 RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 128 Query: 145 N 145 + Sbjct: 129 S 129 >gi|294140211|ref|YP_003556189.1| flagellar motor switch protein FliN [Shewanella violacea DSS12] gi|293326680|dbj|BAJ01411.1| flagellar motor switch protein FliN [Shewanella violacea DSS12] Length = 127 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +DT +E I++ E ++ + + + + D IM+IPV + + +G Sbjct: 4 EDTGDDWADAMAEQAIEEAQAVEFDE-LNDEGQALNAEDSVKLDTIMDIPVTISMEVGRS 62 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 FISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|149188093|ref|ZP_01866388.1| flagellar motor switch protein [Vibrio shilonii AK1] gi|148838081|gb|EDL55023.1| flagellar motor switch protein [Vibrio shilonii AK1] Length = 136 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 7/115 (6%) Query: 35 TNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90 + + + DVD + + + I E D IM+IPV + + +G + I Sbjct: 16 ALGEDPMAPEIDVDEVLAAPLDELQDSPAPISEDERRKLDTIMDIPVTISMEVGRSQISI 75 Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 76 RNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga mobilis SJ95] gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga mobilis SJ95] Length = 372 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 81/149 (54%), Gaps = 8/149 (5%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60 +K+ ++ + G++ + +++N +N++ + +K V + Sbjct: 223 FAQKIRELV---EKTFGKTTEDEESSKNSNTQKRSNSNVIKEKKVKVQPVEFGEFEKKEE 279 Query: 61 ILEKSTD--NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + + D +L++++P+++++ LGS + + ++ L +G +I L+K GE +DI N Sbjct: 280 PISPNIDLSKLELLLDVPLELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANG 339 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + IA+GE+ +++E +FG+RV EI++ + Sbjct: 340 RLIARGEVVVIDE---NFGIRVTEIVSLR 365 >gi|121586780|ref|ZP_01676562.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80] gi|153825567|ref|ZP_01978234.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2] gi|229507790|ref|ZP_04397295.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286] gi|229511973|ref|ZP_04401452.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|229513776|ref|ZP_04403238.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21] gi|229519109|ref|ZP_04408552.1| flagellar motor switch protein FliN [Vibrio cholerae RC9] gi|229522078|ref|ZP_04411495.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80] gi|229524127|ref|ZP_04413532.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis VL426] gi|229528863|ref|ZP_04418253.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)] gi|229607335|ref|YP_002877983.1| flagellar motor switch protein [Vibrio cholerae MJ-1236] gi|255745136|ref|ZP_05419085.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101] gi|262153474|ref|ZP_06028604.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1] gi|262191374|ref|ZP_06049564.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93] gi|121548947|gb|EAX58986.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80] gi|149740718|gb|EDM54817.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2] gi|229332637|gb|EEN98123.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)] gi|229337708|gb|EEO02725.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis VL426] gi|229341003|gb|EEO06008.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80] gi|229343798|gb|EEO08773.1| flagellar motor switch protein FliN [Vibrio cholerae RC9] gi|229348957|gb|EEO13914.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21] gi|229351938|gb|EEO16879.1| flagellar motor switch protein FliN [Vibrio cholerae B33] gi|229355295|gb|EEO20216.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286] gi|229369990|gb|ACQ60413.1| flagellar motor switch protein FliN [Vibrio cholerae MJ-1236] gi|255736966|gb|EET92362.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101] gi|262030711|gb|EEY49345.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1] gi|262032749|gb|EEY51297.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93] gi|327484653|gb|AEA79060.1| Flagellar motor switch protein FliN [Vibrio cholerae LMA3894-4] Length = 136 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 ++ + + + I +++ E + + + I + D IM+IPV + + +G Sbjct: 10 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|150395475|ref|YP_001325942.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419] gi|150026990|gb|ABR59107.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419] Length = 215 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 39/93 (41%), Positives = 66/93 (70%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++ + N DLIM+IP+ +QI+LG+ MQ+S+L+NL++G I LD+++GE V+I Sbjct: 122 AAAEPTPGSGMSANLDLIMDIPIDIQIVLGTSRMQVSSLMNLTEGATIALDRKIGEPVEI 181 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +N + I +GEIT++E D T FGV+++EI ++ Sbjct: 182 MVNGRVIGRGEITVLEGDVTRFGVKLLEIKGSR 214 >gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65] gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65] Length = 185 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 70/139 (50%), Gaps = 7/139 (5%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS----DSNNILEKST 66 + ++ S + L D ++ E Q+ + P+ ++ + + Sbjct: 41 VASGVDEASGESEEDLADEWAAAMEEAGEDPNQEGEGGVKPAPMEEFGEGENQPKSDGKS 100 Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 101 PELDVILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 160 Query: 127 TIMEEDDTHFGVRVIEILN 145 ++ + FG+R+ ++++ Sbjct: 161 VMVND---KFGIRLTDVIS 176 >gi|262404471|ref|ZP_06081026.1| flagellar motor switch protein FliN [Vibrio sp. RC586] gi|262349503|gb|EEY98641.1| flagellar motor switch protein FliN [Vibrio sp. RC586] Length = 136 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 ++ + + S I +++ E + + + I + D IM+IPV + + +G Sbjct: 10 AEEWAAALGEDPSAPDIDVDEILAAPLEELKNTAPAISDDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|258621112|ref|ZP_05716146.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573] gi|261209861|ref|ZP_05924162.1| flagellar motor switch protein FliN [Vibrio sp. RC341] gi|262166226|ref|ZP_06033963.1| flagellar motor switch protein FliN [Vibrio mimicus VM223] gi|262170888|ref|ZP_06038566.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] gi|258586500|gb|EEW11215.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573] gi|260841047|gb|EEX67572.1| flagellar motor switch protein FliN [Vibrio sp. RC341] gi|261891964|gb|EEY37950.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] gi|262025942|gb|EEY44610.1| flagellar motor switch protein FliN [Vibrio mimicus VM223] Length = 136 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 ++ + + + I +++ E + + + I + D IM+IPV + + +G Sbjct: 10 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPISDDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01] gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01] Length = 155 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D+I++IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ Sbjct: 71 PNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++ E FG+R+ ++++ Sbjct: 131 VVVNE---KFGIRLTDVISP 147 >gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter carbinolicus DSM 2380] gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter carbinolicus DSM 2380] Length = 103 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 56/96 (58%), Gaps = 3/96 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 ++ + + +++IP+++ + +GS M I +L+ L +G +I LDK GE Sbjct: 3 TDENTPPKTPPTQNEIRELGFLLDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGE 62 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +D+ +N++ IA+GE ++++ +G+R+ ++++ Sbjct: 63 PLDLYVNSRLIARGEAVMVKD---RYGLRLTDVVSP 95 >gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC2047] Length = 132 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 4/125 (3%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQI 81 D D ++ +E L Q + + + E + D+I++IPV + + Sbjct: 3 DENNPDQAIAEEFQQAEQLNQAPNSGVEAAGFEQLQDEGGEVNLSPELDVILDIPVTVSM 62 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +G+ + I NL+ L+KG VI LD+ GE +D+ +N IA GE+ ++ E FG+R+ Sbjct: 63 EVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLT 119 Query: 142 EILNA 146 ++++ Sbjct: 120 DVVSP 124 >gi|145298354|ref|YP_001141195.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp. salmonicida A449] gi|142851126|gb|ABO89447.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp. salmonicida A449] Length = 121 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 + L ++ + P+ D I + D I++IPV + + +G + I N Sbjct: 3 DAWAAALEEQVIAEAKPAPLEELTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 62 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 63 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 112 >gi|262276387|ref|ZP_06054196.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] gi|262220195|gb|EEY71511.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] Length = 129 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 ++D ++ +E+ + + + ++ I D I++IPV + + +G Sbjct: 4 VEDDWAAALAEQAEVEGGDDVQTAPLDELVDETPPINADEARKLDAILDIPVTISMEVGR 63 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 64 TNINIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|260772331|ref|ZP_05881247.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP 69.14] gi|260611470|gb|EEX36673.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP 69.14] Length = 136 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 10/119 (8%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +D N + + +++ + S PI+ D D IM+IPV + + +G Sbjct: 19 EDPNAPDVDVDEILAAPLDELKDTSPPITEDE-------RRKLDTIMDIPVTISMEVGRS 71 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 72 KISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|332140590|ref|YP_004426328.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550612|gb|AEA97330.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 135 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISS-----DSNNILEKSTDNFDLIMNIPVKMQII 82 D ++ +E + DN ++ D I ++ D I++IPV + + Sbjct: 7 DDWAAAMAEQAESEADQEAGDNEDVQVAELDELTDDAPITQEEKKKLDTILDIPVTISME 66 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 +G + I NL+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ + Sbjct: 67 VGRSQISIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTD 123 Query: 143 ILN 145 +++ Sbjct: 124 VIS 126 >gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA] gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA] Length = 370 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 3/111 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + I + V+ S ++ +S N DLI+++P+++ ++LG I +++ Sbjct: 254 EERAVKNIVEKPVEVHGATFEPLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDIL 313 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +LS G +I LDK E V++ IN +KIA GE+ +++E +FGVR+ I++ Sbjct: 314 DLSTGSLIELDKLAEEPVEVLINGKKIAYGEVVVVDE---NFGVRITSIVS 361 >gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2143] gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2143] Length = 152 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 68/134 (50%), Gaps = 11/134 (8%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 D + D + + + T + ++ +++ + P + + D+I Sbjct: 22 DEQNQSGQNNDKGVDPLSARAQTIDGAKAVEMDELTSDVSPSGN--------GAPDLDVI 73 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 M+IPV + + +G+ + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ E Sbjct: 74 MDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE- 132 Query: 133 DTHFGVRVIEILNA 146 FG+R+ ++++ Sbjct: 133 --KFGIRMTDVISP 144 >gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC 824] gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain [Clostridium acetobutylicum ATCC 824] Length = 413 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 3/104 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 + V+ + + + N DLI+++P+++ ++LG I +++NL G +I Sbjct: 305 QPQVEVNRASFQPLEASDVYGAPKNIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIE 364 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 LDK E V+I +N +K+A GE+ +++E +FGVR+ I+N++ Sbjct: 365 LDKLAEEPVEILVNGKKVAYGEVVVVDE---NFGVRITSIVNSE 405 >gi|261252330|ref|ZP_05944903.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891] gi|260935721|gb|EEX91710.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891] Length = 136 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 + + + S I ++V N + + S+ I E D I++IPV + + +G Sbjct: 10 ADEWAAALGEDPSAPSIDVDEVMNAQLDELEDTSSPISEDERRKLDTILDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSQISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30] gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10] gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20] gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30] gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10] gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20] Length = 352 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 +S+P + DN DLI+++P+ + ++LG I ++++ + G VI L+K Sbjct: 250 EVSKPAFQTLASSGVSDGDNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLT 309 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E ++I +N + IA GE+ ++ E +FGVR+ IL+ + Sbjct: 310 DEPLEILLNGKLIATGEVVVINE---NFGVRITNILSQK 345 >gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund 17B] gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str. Eklund 17B] Length = 385 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 7 KISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66 K+ K ++ + ++ Q E + ++ + + Sbjct: 241 KVVEEKPRVQATNQKVNVHEQVQTTIKAKPIVEAPKVQEPIEVHEAAFETLVPGDTSQVP 300 Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N DLI+++P+ + ++LG I +++NLS G +I LDK E V+I +N +KIA GE+ Sbjct: 301 KNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEPVEILVNGKKIAYGEV 360 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++E +FGVR+ I++ Sbjct: 361 VVVDE---NFGVRITSIVS 376 >gi|222147562|ref|YP_002548519.1| flagellar motor switch protein FliN [Agrobacterium vitis S4] gi|221734550|gb|ACM35513.1| flagellar motor switch protein FliN [Agrobacterium vitis S4] Length = 220 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 42/94 (44%), Positives = 66/94 (70%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + N DLIM+IP+ +QI+LGS M +S L+NL +G +I LDK++GE V+ Sbjct: 125 AAPAHQAPGSALDSNLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVE 184 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +N ++IA+GEIT++E DDT FGV++IE+++ + Sbjct: 185 IMVNGRRIARGEITVLENDDTRFGVKLIEVMSTK 218 >gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018] Length = 395 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 3/104 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 + V+ + + + N DLI+++P+++ ++LG I +++NL G +I Sbjct: 287 QPQVEVNRASFQPLEASDVYGAPKNIDLILDVPLEISVVLGRAKKNIKDILNLGTGSLIE 346 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 LDK E V+I +N +K+A GE+ +++E +FGVR+ I+N++ Sbjct: 347 LDKLAEEPVEILVNGKKVAYGEVVVVDE---NFGVRITSIVNSE 387 >gi|56460300|ref|YP_155581.1| flagellar motor switch protein [Idiomarina loihiensis L2TR] gi|56179310|gb|AAV82032.1| Flagellar motor switch [Idiomarina loihiensis L2TR] Length = 151 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 3/101 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++V S+ + E+ D I++IPV + + +G + I NL+ L++G V+ L Sbjct: 45 DNVQTAELEELSEDKPVTEEEKRKLDAILDIPVTISMEVGRSQISIRNLLQLNQGSVVEL 104 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 ++ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 105 ERVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 142 >gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC 25644] gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC 25644] Length = 409 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 +S+P + + DN DL+M+IP+ + ++LG+ + +++ + G VI L+K Sbjct: 307 EVSQPSFQTLDGHAQVEGDNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLT 366 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 E +DI +N + IA+GE+ ++ + +FGVR+ IL+ Sbjct: 367 DEPLDILLNGKLIAQGEVVVIND---NFGVRITNILS 400 >gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016] gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 396 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILEKSTDNF 69 +K P + + + E I K V+ S D+ N Sbjct: 255 VKTENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNI 314 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 DLI+++P+++ ++LG I +++NL G ++ LDK E V+I +N +K+A GE+ ++ Sbjct: 315 DLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVI 374 Query: 130 EEDDTHFGVRVIEILNAQ 147 +E +FGVR+ I++++ Sbjct: 375 DE---NFGVRIKSIISSE 389 >gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium carboxidivorans P7] gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans P7] gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium carboxidivorans P7] gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans P7] Length = 406 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 55/84 (65%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + N DLI+++P+ + ++LG I +++NL G +I LDK E V+I +N +++A Sbjct: 319 EMPKNIDLILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAY 378 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ +++E +FGVR+ I++++ Sbjct: 379 GEVVVVDE---NFGVRITSIISSE 399 >gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] Length = 354 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + + ++ ++++ N LIM++P+ + + +G ++ +++N Sbjct: 239 ESLQSGMESRTANSVTADTGHAVYQASPSINGNLGLIMDVPLNVSVEIGKTRRRLKDVLN 298 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LDK+ VDI +N Q IA+GE+ ++++ +FGVR+ EI+NA+ Sbjct: 299 FNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD---NFGVRISEIVNAR 347 >gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia R551-3] gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia R551-3] Length = 111 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 + ++ + + N D+I+++PV + + +G + I NL+ L++G V+ L Sbjct: 5 DALEPTPAQFGTLQAEEGAGADLNLDVILDVPVTLSLEVGRARLPIRNLLQLNQGSVVEL 64 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ GES+D+ +N IA GE+ ++ + FGVR+ ++++ Sbjct: 65 ERGAGESLDVFVNGTLIAHGEVVVIND---RFGVRLTDVVSP 103 >gi|74055042|gb|AAZ95847.1| FliN [Aeromonas hydrophila] Length = 130 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 + L ++ + P+ D I + D I++IPV + + +G + I N Sbjct: 12 DAWAAALEEQVIAEAKPAPLEELTDDAPISAEERRKLDTILDIPVTIAMEVGRSQISIRN 71 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L+ L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 72 LLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 121 >gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides] gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides] Length = 152 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG Sbjct: 67 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 126 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R +I+ + Sbjct: 127 EVVMVGE---RFGIRFGQIIEPE 146 >gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum sp. MED92] gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum sp. MED92] Length = 144 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 +++ + + + + L+ V S + + S D+I++IPV + + +G Sbjct: 19 MEEQGDTEESVDPDELLAATGVTGDSVELDELQDEGTPVSDPKLDVILDIPVTLSMEVGQ 78 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + ISNL+ L++G VI LD+ GE +D+ +N IA GE+ ++ + +G+R+ ++++ Sbjct: 79 TDIPISNLLQLNQGSVIELDRVAGEPLDVMVNGTLIAHGEVVVVND---RYGIRLTDVIS 135 Query: 146 AQ 147 Q Sbjct: 136 PQ 137 >gi|308048760|ref|YP_003912326.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] gi|307630950|gb|ADN75252.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] Length = 129 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 12/120 (10%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 L D ++ +E + +++ P+ DS D I++IPV + + +G Sbjct: 13 LADDWAAALEEQAETV----ELEQFDAPMGGDSEQ-----QRKLDAILDIPVTISMEVGR 63 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GE +D+ +N +A GE+ ++ + FG+R+ ++++ Sbjct: 64 SQISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLVAHGEVVVVND---KFGIRLTDVIS 120 >gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus B316] gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus B316] Length = 412 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +N +I ++P+++ + LG I+++++ + G +I LDK GE VD+ +N + +AKGE+ Sbjct: 337 ENIGIIKDVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEV 396 Query: 127 TIMEEDDTHFGVRVIEIL 144 ++EE FGVRV EI+ Sbjct: 397 VVIEES---FGVRVTEIV 411 >gi|118589948|ref|ZP_01547352.1| probable flagellar motor switch protein [Stappia aggregata IAM 12614] gi|118437445|gb|EAV44082.1| probable flagellar motor switch protein [Stappia aggregata IAM 12614] Length = 130 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 2/124 (1%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIIL 83 + +T V + D + ++ + + N+ + D N D I+ IPV +Q++L Sbjct: 1 MSETIVDHIEAEKGPKTRPADAASFAKVETPERNSGSDTIGDDRNLDTILGIPVNIQVVL 60 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 GS M +SNL+ L +G VI L+ RVGE +DI +N + IA+GE+ ++E+D++ FGV + EI Sbjct: 61 GSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVVEDDNSRFGVSLTEI 120 Query: 144 LNAQ 147 ++AQ Sbjct: 121 ISAQ 124 >gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] Length = 126 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 Q + + + L+ ++ +++ + LG + ++ + Sbjct: 16 AQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVELGQSRRSLREILAMGP 75 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 G V+ LDK GE+VD+ +N Q +A+GE+ ++ E ++G+R+ E++N + Sbjct: 76 GSVLELDKHAGEAVDLLVNGQLVARGEVVVIGE---NYGIRITELINPE 121 >gi|27381990|ref|NP_773519.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] gi|27355160|dbj|BAC52144.1| fliN [Bradyrhizobium japonicum USDA 110] Length = 124 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQ 89 S S ++ + + + E N D I+ IPV MQ++LGS + Sbjct: 2 AQSFDYESASASEETETSPLERLAEIAARTAEESGKFANVDAILRIPVTMQVVLGSATIP 61 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++NL+ L +G V+ LD RVGE VD+ +N + +A+GE+ ++EED++ FGV + EI+ Sbjct: 62 VANLMKLGRGAVVPLDHRVGEPVDVVVNGRIVARGEVVVVEEDNSRFGVSLTEIVGP 118 >gi|260767698|ref|ZP_05876633.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260617207|gb|EEX42391.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315179470|gb|ADT86384.1| flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 136 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 10/119 (8%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +D + + + +++ + + PIS D D IM+IPV + + +G Sbjct: 19 EDPSAPDIDVDEVLAAPLDELKDTTSPISDDE-------RRKLDTIMDIPVTISMEVGRS 71 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ LD+ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 72 KISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC BAA-613] gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC BAA-613] Length = 368 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + N LIM++P+ + + +G ++ +++N S G V+ LDK+ VDI +N Q IA Sbjct: 280 QSMNGNLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIA 339 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ ++++ +FGVR+ EI+N + Sbjct: 340 RGEVVVIDD---NFGVRISEIVNTR 361 >gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF] gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens QYMF] Length = 393 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 K N + D P+Q S N+ ++ S +N L Sbjct: 263 KSNQQPHLSDHDAPVQQRQQPSLENS--------KINVQPVQFQSFDQQSNRGLPENIAL 314 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I ++P+ + + LG +IS ++ G +I L+K VGE +DI +N Q +AKGE+ +++E Sbjct: 315 IQDVPLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDE 374 Query: 132 DDTHFGVRVIEILNA 146 ++G+R+ +I+ Sbjct: 375 ---NYGIRITDIVAP 386 >gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555] gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555] Length = 392 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 4/138 (2%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILEKSTDNF 69 +K P + + + E I K V+ S D+ N Sbjct: 251 VKTENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNI 310 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 DLI+++P+++ ++LG I +++NL G ++ LDK E V+I +N +K+A GE+ ++ Sbjct: 311 DLILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVI 370 Query: 130 EEDDTHFGVRVIEILNAQ 147 +E +FGVR+ I++++ Sbjct: 371 DE---NFGVRIKSIISSE 385 >gi|209695732|ref|YP_002263662.1| flagellar motor switch protein [Aliivibrio salmonicida LFI1238] gi|208009685|emb|CAQ79984.1| polar flagellar switch protein FliN [Aliivibrio salmonicida LFI1238] Length = 127 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E + + E D I++IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 28 EDLEETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGES 87 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 88 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118 >gi|239997092|ref|ZP_04717616.1| flagellar motor switch protein [Alteromonas macleodii ATCC 27126] Length = 135 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 3/101 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 DV +D I ++ D I++IPV + + +G + I NL+ L++G V+ L Sbjct: 29 EDVQVAELDELTDDAPITQEEKKKLDTILDIPVTISMEVGRSQISIRNLLQLNQGSVVEL 88 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 89 DRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 126 >gi|322421723|ref|YP_004200946.1| flagellar motor switch protein FliN [Geobacter sp. M18] gi|320128110|gb|ADW15670.1| flagellar motor switch protein FliN [Geobacter sp. M18] Length = 101 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 61/97 (62%), Gaps = 4/97 (4%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 +SE ++ D + + N D IM+IP+++ + LG + + +++ L++G V+ L K G Sbjct: 1 MSEKLALDEQREVPQ-PKNLDFIMDIPLQLTVELGRTKLLVRDVLQLNQGSVVELTKLAG 59 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 E +D+ +N++ +A+GE ++ + FG+R+++I++ Sbjct: 60 EPLDVFVNSKLVARGEAVVVND---KFGIRLLDIVSP 93 >gi|59712451|ref|YP_205227.1| flagellar motor switch protein [Vibrio fischeri ES114] gi|197335660|ref|YP_002156670.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11] gi|59480552|gb|AAW86339.1| flagellar motor switch component FliN [Vibrio fischeri ES114] gi|197317150|gb|ACH66597.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11] Length = 129 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E + + E D I++IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 30 EDLEEKAPEFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGES 89 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 90 LDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM 17241] gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM 17241] Length = 446 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + +V N P + S N DL+M + + + + +G +I +++ Sbjct: 326 QEPQPATQKPINVQNTQFPQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDII 385 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + +G VI L+K+ G VDI +N + +A+G++ ++++ +FGVR+ EI+ + Sbjct: 386 DFGQGTVIELNKQAGAPVDIVVNGRLLARGDVVVIDD---NFGVRITEIVGTK 435 >gi|225569964|ref|ZP_03778989.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM 15053] gi|225161434|gb|EEG74053.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM 15053] Length = 460 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 64/111 (57%), Gaps = 3/111 (2%) Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 +K V+ +S+P S E N +LIM +P+++ + +G + +++ L Sbjct: 348 TQAAGPKKIKVNPVSQPNLEQSAEETELQESNLELIMGVPLEVSVEIGRTKKLVKDVLEL 407 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +KG ++ LDK GE VD+ +N Q IA+G++ ++++ +FG+R+ EIL + Sbjct: 408 NKGSLVVLDKLAGEQVDLFVNGQCIAQGDVVVVDD---NFGIRITEILADE 455 >gi|147674715|ref|YP_001217647.1| flagellar motor switch protein [Vibrio cholerae O395] gi|146316598|gb|ABQ21137.1| flagellar motor switch protein FliN [Vibrio cholerae O395] gi|227014021|gb|ACP10231.1| flagellar motor switch protein FliN [Vibrio cholerae O395] Length = 138 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 ++ + + + I +++ E + + + I + D IM+IPV + + +G Sbjct: 12 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 71 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ ES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 72 RSKISIRNLLQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 128 Query: 145 N 145 + Sbjct: 129 S 129 >gi|254506934|ref|ZP_05119073.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus 16] gi|323491453|ref|ZP_08096637.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546] gi|323496547|ref|ZP_08101601.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326] gi|219550219|gb|EED27205.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus 16] gi|323314322|gb|EGA67402.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546] gi|323318391|gb|EGA71348.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326] Length = 136 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 10/119 (8%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +D + + M Q +++++ S PIS D D I++IPV + + +G Sbjct: 19 EDPSAPEIDVDEVMSAQLDELEDTSSPISDDE-------RRKLDTILDIPVTISMEVGRS 71 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 72 QISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|332533118|ref|ZP_08408987.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis ANT/505] gi|332037400|gb|EGI73854.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis ANT/505] Length = 132 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 9/112 (8%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P ++ E + + D +S + + D I++IPV + + +G + I NL Sbjct: 21 PDDSGEAHVAELD------ELSDSKHEMSGDEKRKLDTILDIPVTISMEVGRSKINIRNL 74 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + L++G V+ LD+ GE +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 75 LQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123 >gi|170725981|ref|YP_001760007.1| flagellar motor switch protein [Shewanella woodyi ATCC 51908] gi|169811328|gb|ACA85912.1| flagellar motor switch protein FliN [Shewanella woodyi ATCC 51908] Length = 129 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + ++ E+ D IM+IPV + + +G + I NL+ L++G V+ LD+ GE +D+ +N Sbjct: 36 AADLSEEDVAKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVN 95 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145 IA GE+ ++ + FG+R+ ++++ Sbjct: 96 GTLIAHGEVVVVND---KFGIRLTDVIS 120 >gi|241203097|ref|YP_002974193.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856987|gb|ACS54654.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 194 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 1/125 (0%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 ++P + S D + S + NFDLIM+IP+ +QI+ Sbjct: 69 ESPFGGDDFGGDFGGSASSAAGMDFGS-SPSFEESPAPLGSALNSNFDLIMDIPIDVQIM 127 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE Sbjct: 128 LGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIE 187 Query: 143 ILNAQ 147 +L+ + Sbjct: 188 VLSTK 192 >gi|77359749|ref|YP_339324.1| flagellar motor switch protein [Pseudoalteromonas haloplanktis TAC125] gi|76874660|emb|CAI85881.1| flagellar biosynthesis; component of motor switch and energizing [Pseudoalteromonas haloplanktis TAC125] Length = 132 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + +S + I D I++IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 33 DELSDAKHEISGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEP 92 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 93 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123 >gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum 5521] gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum 5521] gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4 str. BoNT E BL5262] Length = 412 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 30 NVSSPTNNSEMLIQK--NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 S P Q+ V+ + N DLIM++P+ + ++LG Sbjct: 289 GYSQPQMYGGGQAQQYVQPVEVHQAAFEPLTPQNSVPPIKNIDLIMDVPLDISVVLGRTK 348 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I +++NL G +I LDK E V+I +N ++IA GE+ +++E +FGVR+ I++ Sbjct: 349 KSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALGEVVVVDE---NFGVRITNIVS 403 >gi|118581838|ref|YP_903088.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM 2379] gi|118504548|gb|ABL01031.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM 2379] Length = 99 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 56/92 (60%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 +N E N D I++IP+++ + LG + + +++ L++G V+ L K GE +DI Sbjct: 3 DKPESNETEIDRKNLDFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDI 62 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N++ +A+GE ++ E FGVR+++I++ Sbjct: 63 FVNSKLVARGEAVVVNE---KFGVRLVDIVSP 91 >gi|262167484|ref|ZP_06035190.1| flagellar motor switch protein FliN [Vibrio cholerae RC27] gi|262024056|gb|EEY42751.1| flagellar motor switch protein FliN [Vibrio cholerae RC27] Length = 136 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNIS-EPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 ++ + + + I +++ E + + + I + D IM+IPV + + +G Sbjct: 10 AEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVG 69 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + I NL+ L++G V+ LD+ ES+D+ +N IA GE+ ++ + FG+R+ +++ Sbjct: 70 RSKISIRNLLQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVND---KFGIRLTDVI 126 Query: 145 N 145 + Sbjct: 127 S 127 >gi|206890622|ref|YP_002249867.1| flagellar motor switch protein FliN [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742560|gb|ACI21617.1| flagellar motor switch protein FliN [Thermodesulfovibrio yellowstonii DSM 11347] Length = 139 Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 +++ + + K +V S I + + T + D I++IP+++ +++G + Sbjct: 20 DMAKALEMEKAMKAKEEVQ--SPHIDEFTVTEEKPKTRDIDFILDIPLELVVVIGRTRIL 77 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + L+ L++G V+ LDK GE +++ +N + + +GE+ ++ E FG+R+ +I++ Q Sbjct: 78 VQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNE---KFGIRITDIISPQ 132 >gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484] gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484] Length = 238 Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S +++ + + + N ++ ++ + + +G + + +++L+ G V+ LD+ G Sbjct: 138 SPKVATPTTSQVPTPRANLRMLYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELDRTAGS 197 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 D+ +N + +A+GE+ +++E +G+RV EI+ Sbjct: 198 PADVLVNGRLVARGEVVVVDEV---YGIRVTEIV 228 >gi|153011535|ref|YP_001372749.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC 49188] gi|151563423|gb|ABS16920.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC 49188] Length = 115 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 44 KNDVDNISEPISSDSNNILEK--STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + ++D E + + +K S N +LIM IPV +Q++LG M ++NL+ L +G V Sbjct: 11 QQELDEAIEELREEKPRGTQKGASKPNLELIMGIPVDVQVVLGGTTMPVANLMKLGRGAV 70 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+ Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115 >gi|119469994|ref|ZP_01612799.1| flagellar motor switch protein [Alteromonadales bacterium TW-7] gi|119446704|gb|EAW27977.1| flagellar motor switch protein [Alteromonadales bacterium TW-7] Length = 132 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + +S + + I + D I++IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 33 DELSDEKSEITGEEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEP 92 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 93 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123 >gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative Flagelar Motor Switch Protein Flin (Tm0680) From Thermotoga Maritima At 1.85 A Resolution gi|39654325|pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative Flagelar Motor Switch Protein Flin (Tm0680) From Thermotoga Maritima At 1.85 A Resolution Length = 96 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 E +D +L+++IP+K+ + LG + ++ G +I LDK GE VDI + Sbjct: 1 SETRKTEVPSDKLELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILV 60 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 N + IA+GE+ +++E +FGVR+ EI++ + Sbjct: 61 NGKLIARGEVVVIDE---NFGVRITEIVSPK 88 >gi|189426341|ref|YP_001953518.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ] gi|189422600|gb|ACD96998.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ] Length = 99 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 E+ N + I++IP+++ + LG + + +++ L++G V+ L K GE +DI +N++ + Sbjct: 10 AEQEKKNLEFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDIFVNSKLV 69 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 A+GE ++ E FGVR+++I++ Sbjct: 70 ARGEAVVVNE---KFGVRLVDIVSP 91 >gi|260776476|ref|ZP_05885371.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] gi|260607699|gb|EEX33964.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] Length = 136 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 10/119 (8%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +D + + M Q +++ + PIS D D I++IPV + + +G Sbjct: 19 EDPDAPEVDVDEVMAAQLDELQDTGSPISEDE-------RRKLDTILDIPVTISMEVGRS 71 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 72 QISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 127 >gi|190890354|ref|YP_001976896.1| flagellar motor switch protein [Rhizobium etli CIAT 652] gi|190695633|gb|ACE89718.1| flagellar motor switch protein [Rhizobium etli CIAT 652] Length = 195 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 75/125 (60%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D+P + S + + T NF+LIM+IP+ +QI+ Sbjct: 69 DSPFGGDDFGGDFGAGNASPAAGMNFGDSSSFETSPAPLGSALTSNFELIMDIPIDVQIM 128 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE Sbjct: 129 LGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIE 188 Query: 143 ILNAQ 147 +L+ + Sbjct: 189 VLSTK 193 >gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 195 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 44/97 (45%), Positives = 70/97 (72%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S + + NFDLIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE Sbjct: 97 SPSFEASPAPLGSALNSNFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGE 156 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ + Sbjct: 157 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 193 >gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC 51333] gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC 51333] Length = 250 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 ++ ++ D ++ P + + E + S E+ ++ L Sbjct: 110 SEDWTKVTLVADGTVEGWLAVRPAPAAPKSAPAEEAKTAPEGPITQSTATPEQRAESMKL 169 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++ + + +G + + ++++LS G VI LD+ G + D+ +N + IA+GEI +++E Sbjct: 170 LYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIARGEIVVVDE 229 Query: 132 DDTHFGVRVIEILN 145 + +G+R+ EI++ Sbjct: 230 E---YGIRITEIVS 240 >gi|218508216|ref|ZP_03506094.1| flagellar motor switch protein [Rhizobium etli Brasil 5] Length = 195 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 75/125 (60%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D+P + S + + T NF+LIM+IP+ +QI+ Sbjct: 69 DSPFGGDDFGGDFGAGNASPAAGMDFGDSSSFETSPAPLGSALTSNFELIMDIPIDVQIM 128 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE Sbjct: 129 LGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIE 188 Query: 143 ILNAQ 147 +L+ + Sbjct: 189 VLSTK 193 >gi|239834453|ref|ZP_04682781.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG 3301] gi|239822516|gb|EEQ94085.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG 3301] Length = 115 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 42/114 (36%), Positives = 71/114 (62%), Gaps = 2/114 (1%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEK--STDNFDLIMNIPVKMQIILGSCCMQISN 92 + +E + ++D E + + +K S N +LIM IPV +Q++LG M ++N Sbjct: 2 SKETEDKNMQQELDEAIEELREEKPRSAQKGPSKPNLELIMGIPVDVQVVLGGTTMPVAN 61 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L+ L +G VITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+ Sbjct: 62 LMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115 >gi|189022343|ref|YP_001932084.1| Flagellar motor switch FliN protein [Brucella abortus S19] gi|225628599|ref|ZP_03786633.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo] gi|237816638|ref|ZP_04595630.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A] gi|254691435|ref|ZP_05154689.1| Flagellar motor switch FliN protein [Brucella abortus bv. 6 str. 870] gi|254695266|ref|ZP_05157094.1| Flagellar motor switch FliN protein [Brucella abortus bv. 3 str. Tulya] gi|254698365|ref|ZP_05160193.1| Flagellar motor switch FliN protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699434|ref|ZP_05161262.1| Flagellar motor switch FliN protein [Brucella suis bv. 5 str. 513] gi|254706319|ref|ZP_05168147.1| Flagellar motor switch FliN protein [Brucella pinnipedialis M163/99/10] gi|254711389|ref|ZP_05173200.1| Flagellar motor switch FliN protein [Brucella pinnipedialis B2/94] gi|254711988|ref|ZP_05173799.1| Flagellar motor switch FliN protein [Brucella ceti M644/93/1] gi|254715058|ref|ZP_05176869.1| Flagellar motor switch FliN protein [Brucella ceti M13/05/1] gi|254720634|ref|ZP_05182445.1| Flagellar motor switch FliN protein [Brucella sp. 83/13] gi|256029981|ref|ZP_05443595.1| Flagellar motor switch FliN protein [Brucella pinnipedialis M292/94/1] gi|256043046|ref|ZP_05445991.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 1 str. Rev.1] gi|256111968|ref|ZP_05452919.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 3 str. Ether] gi|256256621|ref|ZP_05462157.1| Flagellar motor switch FliN protein [Brucella abortus bv. 9 str. C68] gi|256262890|ref|ZP_05465422.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str. 63/9] gi|260544316|ref|ZP_05820137.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038] gi|260564278|ref|ZP_05834763.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str. 16M] gi|260568541|ref|ZP_05839010.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40] gi|260757054|ref|ZP_05869402.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str. 870] gi|260759575|ref|ZP_05871923.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str. 292] gi|260762819|ref|ZP_05875151.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str. 86/8/59] gi|260882864|ref|ZP_05894478.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str. C68] gi|261215631|ref|ZP_05929912.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str. Tulya] gi|261216765|ref|ZP_05931046.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1] gi|261313766|ref|ZP_05952963.1| flagellar motor switch protein FliN [Brucella pinnipedialis M163/99/10] gi|261318995|ref|ZP_05958192.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94] gi|261319632|ref|ZP_05958829.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1] gi|261749885|ref|ZP_05993594.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513] gi|265985678|ref|ZP_06098413.1| flagellar motor switch protein FliN [Brucella sp. 83/13] gi|265987002|ref|ZP_06099559.1| flagellar motor switch protein FliN [Brucella pinnipedialis M292/94/1] gi|265989484|ref|ZP_06102041.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str. Rev.1] gi|265993417|ref|ZP_06105974.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str. Ether] gi|294853147|ref|ZP_06793819.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL 07-0026] gi|297249978|ref|ZP_06933679.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5 str. B3196] gi|306837358|ref|ZP_07470237.1| flagellar motor switch protein FliN [Brucella sp. NF 2653] gi|306841072|ref|ZP_07473795.1| flagellar motor switch protein FliN [Brucella sp. BO2] gi|306846303|ref|ZP_07478864.1| flagellar motor switch protein FliN [Brucella sp. BO1] gi|189020917|gb|ACD73638.1| Flagellar motor switch FliN protein [Brucella abortus S19] gi|225616445|gb|EEH13493.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo] gi|237787451|gb|EEP61667.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A] gi|260097587|gb|EEW81461.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038] gi|260151921|gb|EEW87014.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str. 16M] gi|260155206|gb|EEW90287.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40] gi|260669893|gb|EEX56833.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str. 292] gi|260673240|gb|EEX60061.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str. 86/8/59] gi|260677162|gb|EEX63983.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str. 870] gi|260872392|gb|EEX79461.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str. C68] gi|260917238|gb|EEX84099.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str. Tulya] gi|260921854|gb|EEX88422.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1] gi|261292322|gb|EEX95818.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1] gi|261298218|gb|EEY01715.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94] gi|261302792|gb|EEY06289.1| flagellar motor switch protein FliN [Brucella pinnipedialis M163/99/10] gi|261739638|gb|EEY27564.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513] gi|262764287|gb|EEZ10319.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str. Ether] gi|263000153|gb|EEZ12843.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str. Rev.1] gi|263092727|gb|EEZ16936.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str. 63/9] gi|264659199|gb|EEZ29460.1| flagellar motor switch protein FliN [Brucella pinnipedialis M292/94/1] gi|264664270|gb|EEZ34531.1| flagellar motor switch protein FliN [Brucella sp. 83/13] gi|294818802|gb|EFG35802.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL 07-0026] gi|297173847|gb|EFH33211.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5 str. B3196] gi|306273298|gb|EFM55167.1| flagellar motor switch protein FliN [Brucella sp. BO1] gi|306288910|gb|EFM60213.1| flagellar motor switch protein FliN [Brucella sp. BO2] gi|306407550|gb|EFM63750.1| flagellar motor switch protein FliN [Brucella sp. NF 2653] gi|326410310|gb|ADZ67374.1| Flagellar motor switch FliN protein [Brucella melitensis M28] gi|326553603|gb|ADZ88242.1| Flagellar motor switch FliN protein [Brucella melitensis M5-90] Length = 115 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V Sbjct: 11 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 70 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+ Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115 >gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC 51599] gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC 51599] Length = 135 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 18 RSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 + NP V S + + + + P + + + I++IPV Sbjct: 2 SEQNTVNPESGEIVQSADAPASSAV--DPSVTGALPGVMARLGQGTEGGADIERILDIPV 59 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 ++ + +G I+N++ L+ G V+ LD + G +D+ IN IA+GE+ ++ + FG Sbjct: 60 QLSVEIGRTRTTINNVLQLAPGSVVELDAQAGAPMDVLINGYLIAQGEVVVVND---RFG 116 Query: 138 VRVIEILNA 146 +R+ +I+ Sbjct: 117 IRLTDIVTP 125 >gi|222084856|ref|YP_002543385.1| flagellar motor switch protein [Agrobacterium radiobacter K84] gi|221722304|gb|ACM25460.1| flagellar motor switch protein [Agrobacterium radiobacter K84] Length = 179 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 1/125 (0%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS-SDSNNILEKSTDNFDLIMNIPVKMQII 82 P + + + P + +++ + N DLIM+IP+ +QI+ Sbjct: 53 EPATGLSAFGDEFGGDDAGSAFGAGDFGGPSAFAETAAPGSALSANLDLIMDIPIDVQIV 112 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LGS MQ+S L+NL++G +I LDKR+GE V+IT+N + I +GEIT++E DDT FG+++IE Sbjct: 113 LGSSRMQVSGLMNLTEGAIIALDKRIGEPVEITVNGRCIGRGEITVLEHDDTRFGIKLIE 172 Query: 143 ILNAQ 147 + N + Sbjct: 173 LSNNK 177 >gi|222053614|ref|YP_002535976.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32] gi|221562903|gb|ACM18875.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32] Length = 100 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + N D I++IP+++ + LG + + +++ L++G V+ L K GE +D+ Sbjct: 4 TGELEEQKNAEMKNLDFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAGEPLDV 63 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N++ +A+GE ++ + FG+R+++I++ Sbjct: 64 FVNSKLVARGEAVVIND---KFGIRLVDIVSP 92 >gi|94264048|ref|ZP_01287848.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] gi|94266366|ref|ZP_01290065.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] gi|93453018|gb|EAT03506.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] gi|93455559|gb|EAT05746.1| Surface presentation of antigens (SPOA) protein [delta proteobacterium MLMS-1] Length = 136 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 E ++ + D + + + + +++ + ST N D ++++ Sbjct: 4 EEKNQATEEAGDDWSAAL-ADQGKDSPAFEELEASGA--AGGGGAAPSASTQNLDFLLDV 60 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+++ + LG M I+ L+ L++G V+ LDK G SV+I +N + + KGE+ ++ E Sbjct: 61 PLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEVVVVNE---R 117 Query: 136 FGVRVIEILN 145 FG+RV EI++ Sbjct: 118 FGIRVTEIIS 127 >gi|254473327|ref|ZP_05086724.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062] gi|211957443|gb|EEA92646.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062] Length = 138 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 39/85 (45%), Positives = 60/85 (70%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E N D ++ IPV MQ++LGS M +++L+ L +G VI LD RVGE VDI +N + +A Sbjct: 50 ENVDRNLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVA 109 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GEI ++E+D++ FGV + EI+ A+ Sbjct: 110 RGEIVVVEDDNSRFGVSLTEIVGAK 134 >gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans Z-2901] Length = 347 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 + P + +++ NI + + + + + +LI++IP+K++++LG I Sbjct: 229 TEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVVLGRTRRPIK 288 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +++ G +I LD+ V E V++ +N +AKGEI ++ E +FG+++ +IL+ + Sbjct: 289 EILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGE---NFGIKINQILSPK 341 >gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 250 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78 ++ D ++ P + + E + S E+ ++ L+ ++ + Sbjct: 117 TLVADGTVEGWLAVRPAPATPKSAPAEEAKAAPEGPITQSTATPEQRAESMKLLYDVEMT 176 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + +G + + ++++LS G VI LD+ G + D+ +N + IA+GEI +++E+ +G+ Sbjct: 177 LTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIARGEIVVVDEE---YGI 233 Query: 139 RVIEILN 145 R+ EI++ Sbjct: 234 RITEIVS 240 >gi|39995530|ref|NP_951481.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA] gi|39982293|gb|AAR33754.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA] gi|298504530|gb|ADI83253.1| flagellar motor switch protein FliN [Geobacter sulfurreducens KN400] Length = 101 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 56/93 (60%), Gaps = 3/93 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E N + I++IP+++ + LG + + +++ L++G V+ L K GE +D Sbjct: 4 FTKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLD 63 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +N++ +A+GE ++ E FGVR+++I++ Sbjct: 64 VFVNSKLVARGEAVVVNE---KFGVRLVDIVSP 93 >gi|148558477|ref|YP_001257190.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC 25840] gi|148369762|gb|ABQ62634.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC 25840] Length = 115 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V Sbjct: 11 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 70 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+ Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115 >gi|71282178|ref|YP_268252.1| flagellar motor switch protein [Colwellia psychrerythraea 34H] gi|71147918|gb|AAZ28391.1| flagellar motor switch protein FliN [Colwellia psychrerythraea 34H] Length = 131 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E ++ D I D I++IPV + + +G + I NL+ L++G V+ LD+ GES Sbjct: 32 EELTPDDAPITGDEKRKLDAILDIPVTISMEVGRSNISIRNLLQLNQGSVVELDRVAGES 91 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 92 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVVS 122 >gi|325291949|ref|YP_004277813.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3] gi|45479284|gb|AAS66686.1| FliN [Agrobacterium sp. H13-3] gi|325059802|gb|ADY63493.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3] Length = 179 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 71/99 (71%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + ++ + +DN DLIM+IP+ +QI+LG+ M +S L++L +G I LD+++ Sbjct: 79 AATPQVAGIKAPLGSGLSDNMDLIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKI 138 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 GE V+I +N ++IA+GEIT++E+DDT FGV++IE+++ + Sbjct: 139 GEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIEVMSTR 177 >gi|124516301|gb|EAY57809.1| flagellar motor switch protein FliN [Leptospirillum rubarum] gi|206603144|gb|EDZ39624.1| flagellar motor switch protein FliN [Leptospirillum sp. Group II '5-way CG'] Length = 125 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + ++ D ++++P+ + + +G+ M I +L+ L +G V+ LDK GE ++I IN++ + Sbjct: 37 TSEPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLV 96 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 A+GE+ ++ + +GVR+ +I++ Sbjct: 97 ARGEVVMVND---KYGVRLTDIVSP 118 >gi|17989457|ref|NP_542090.1| flagellar motor switch protein FLIN [Brucella melitensis bv. 1 str. 16M] gi|62317076|ref|YP_222929.1| flagellar motor switch protein FliN [Brucella abortus bv. 1 str. 9-941] gi|83269069|ref|YP_418360.1| flagellar motor switch FliN [Brucella melitensis biovar Abortus 2308] gi|161620209|ref|YP_001594095.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365] gi|225685984|ref|YP_002733956.1| flagellar motor switch protein FliN [Brucella melitensis ATCC 23457] gi|254731810|ref|ZP_05190388.1| Flagellar motor switch FliN protein [Brucella abortus bv. 4 str. 292] gi|256014913|ref|YP_003104922.1| flagellar motor switch protein FliN [Brucella microti CCM 4915] gi|17985336|gb|AAL54354.1| flagellar motor switch protein flin [Brucella melitensis bv. 1 str. 16M] gi|62197269|gb|AAX75568.1| flagellar motor switch protein FliN, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939343|emb|CAJ12288.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Brucella melitensis biovar Abortus 2308] gi|161337020|gb|ABX63324.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365] gi|225642089|gb|ACO02002.1| flagellar motor switch protein FliN [Brucella melitensis ATCC 23457] gi|255997573|gb|ACU49260.1| flagellar motor switch protein FliN [Brucella microti CCM 4915] Length = 106 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V Sbjct: 2 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 61 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+ Sbjct: 62 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 106 >gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB 8052] gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB 8052] Length = 398 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 + V+ + N DLI+++P+ + ++LG I +++NL G +I Sbjct: 291 QQPVEVHAATFEPLMPQNSVPPIKNIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIE 350 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LDK E V+I +N ++IA GE+ +++E +FG+R+ I+++ Sbjct: 351 LDKLAEEPVEILVNGKQIALGEVVVVDE---NFGIRITNIVSS 390 >gi|256059634|ref|ZP_05449831.1| Flagellar motor switch FliN protein [Brucella neotomae 5K33] gi|261323604|ref|ZP_05962801.1| flagellar motor switch protein FliN [Brucella neotomae 5K33] gi|261299584|gb|EEY03081.1| flagellar motor switch protein FliN [Brucella neotomae 5K33] Length = 115 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V Sbjct: 11 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQMVLGGTTMPVSSLMKLGRGAV 70 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+ Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 115 >gi|148266211|ref|YP_001232917.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4] gi|146399711|gb|ABQ28344.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4] Length = 103 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 60/97 (61%), Gaps = 3/97 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 ++E I SD N N + I++IP+++ + LG + + +++ L++G V+ L K G Sbjct: 2 VNEKIDSDELNNNSLEVKNLEFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAG 61 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 E +D+ +N++ +A+GE ++ + FG+R+++I++ Sbjct: 62 EPLDVFVNSKLVARGEAVVIND---KFGIRLVDIVSP 95 >gi|163850081|ref|YP_001638124.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218528684|ref|YP_002419500.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240137214|ref|YP_002961683.1| flagellar motor switch protein fliN [Methylobacterium extorquens AM1] gi|254559226|ref|YP_003066321.1| flagellar motor switch protein fliN [Methylobacterium extorquens DM4] gi|163661686|gb|ABY29053.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218520987|gb|ACK81572.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240007180|gb|ACS38406.1| flagellar motor switch protein fliN [Methylobacterium extorquens AM1] gi|254266504|emb|CAX22268.1| flagellar motor switch protein fliN [Methylobacterium extorquens DM4] Length = 108 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 38/80 (47%), Positives = 57/80 (71%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D I+ IPV MQ++LGS M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI Sbjct: 22 RNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEI 81 Query: 127 TIMEEDDTHFGVRVIEILNA 146 I+EED++ FGV + E++ Sbjct: 82 VIVEEDNSRFGVSLTEVVGP 101 >gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571] gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571] Length = 120 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 36/104 (34%), Positives = 62/104 (59%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 D S+ + + + + +M IPV +Q++LGS M ++NL+ L +G ++ Sbjct: 11 TAQDEALFSKALKDNGKEETIGTGQGLESVMRIPVLLQVVLGSASMPVANLMKLGRGAIV 70 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 LD RVGE VD+ +N + IA+GE+ ++EED++ FGV + EI+ Sbjct: 71 PLDHRVGEPVDVVVNGRIIARGEVMVVEEDNSRFGVTLTEIVGP 114 >gi|188579886|ref|YP_001923331.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] gi|179343384|gb|ACB78796.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] Length = 108 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 38/80 (47%), Positives = 57/80 (71%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N D I+ IPV MQ++LGS M +++L+ L +G V+ LD RVGE VD+ +N + IA+GEI Sbjct: 22 RNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEI 81 Query: 127 TIMEEDDTHFGVRVIEILNA 146 I+EED++ FGV + E++ Sbjct: 82 VIVEEDNSRFGVSLTEVVGP 101 >gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] Length = 132 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSC 86 +T++S+ K + + + + E S N + I+ IPV +Q++LGS Sbjct: 6 ETDLSNAAAEHASEPFKPEAASFGKLADLAARAAEETSRLTNLEPILRIPVTVQVLLGSA 65 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M +++L+ L +G VI LD RVGE V++ +N + +A+G + ++E++++ FGV + EI+ Sbjct: 66 TMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDENSRFGVSLTEIVG 124 >gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Thermomicrobium roseum DSM 5159] gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Thermomicrobium roseum DSM 5159] Length = 128 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + + D + ++ V++ LGS M+I +++ L G V+ LD+ GE V++TIN Sbjct: 33 RDQPIGNGRQGIDFLRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTIN 92 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 IA+GE+ +++E F VR+ EI++ + Sbjct: 93 KTLIARGEVVVVDE---KFAVRITEIVSPE 119 >gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM 10542] gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM 10542] Length = 247 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + + + DN L+ ++ + + +G + + ++ L G VI LD+ G Sbjct: 150 AAQAGAAGTSKGASVGDNLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGS 209 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 D+ +N + IA+GE+ +++ED +G+R+ EI++ Sbjct: 210 PADLMVNGRLIARGEVVVIDED---YGLRITEIVD 241 >gi|23499886|ref|NP_699326.1| flagellar motor switch protein FliN [Brucella suis 1330] gi|23463461|gb|AAN33331.1| flagellar motor switch protein FliN, putative [Brucella suis 1330] Length = 106 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L G V Sbjct: 2 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGCGAV 61 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV + EI+ Sbjct: 62 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 106 >gi|110632666|ref|YP_672874.1| flagellar motor switch protein FliN [Mesorhizobium sp. BNC1] gi|110283650|gb|ABG61709.1| flagellar motor switch protein FliN [Chelativorans sp. BNC1] Length = 121 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 71/111 (63%), Gaps = 5/111 (4%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQIILGSCCMQISN 92 + + K++ + + I + + E++ N D +++IPV++QI+LGS M +S Sbjct: 4 TPSAVHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSE 63 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 L+ L +G ++LD+R+GE V+I +N + IA+GEITI+E D + FGVR+ EI Sbjct: 64 LMALQRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114 >gi|209547919|ref|YP_002279836.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533675|gb|ACI53610.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 195 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 42/97 (43%), Positives = 70/97 (72%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + + + NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE Sbjct: 97 TPAFDASPAPLGSALNSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGE 156 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ + Sbjct: 157 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 193 >gi|315127311|ref|YP_004069314.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913] gi|315015825|gb|ADT69163.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913] Length = 132 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 54/94 (57%), Gaps = 3/94 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + + + + + D I++IPV + + +G + I NL+ L++G V+ LD+ GE Sbjct: 33 DELDDSKHELSGEEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEP 92 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 93 LDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 123 >gi|197120187|ref|YP_002140614.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem] gi|253702496|ref|YP_003023685.1| flagellar motor switch protein FliN [Geobacter sp. M21] gi|197089547|gb|ACH40818.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem] gi|251777346|gb|ACT19927.1| flagellar motor switch protein FliN [Geobacter sp. M21] Length = 101 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 N D IM+IP+++ + LG + + +++ L++G V+ L K GE +D+ +N++ +A+ Sbjct: 14 PQPKNLDFIMDIPLQLTVELGRSKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVAR 73 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE ++ + FG+R+++I++ Sbjct: 74 GEAVVVND---KFGIRLLDIVSP 93 >gi|90406811|ref|ZP_01215003.1| flagellar motor switch protein [Psychromonas sp. CNPT3] gi|90312048|gb|EAS40141.1| flagellar motor switch protein [Psychromonas sp. CNPT3] Length = 129 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 7/122 (5%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNIS----EPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83 + + L + D D+ + E + +ST + D IM+IPV + + + Sbjct: 2 SSEQDMADEWAAALDESGDTDSSTVNNVELDDFQESGSDGESTVSIDSIMDIPVTISMEV 61 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G + I NL+ L++G V+ L++ GE +D+ +N IA GE+ ++ + FG+R+ ++ Sbjct: 62 GRSRINIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVVND---KFGIRLTDV 118 Query: 144 LN 145 ++ Sbjct: 119 IS 120 >gi|159184368|ref|NP_353589.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str. C58] gi|3913685|sp|Q57259|FLIN_AGRT5 RecName: Full=Flagellar motor switch protein FliN gi|39092|emb|CAA46543.1| FliN homologue [Agrobacterium tumefaciens] gi|1480839|gb|AAC45323.1| FliN [Agrobacterium tumefaciens] gi|2459704|gb|AAB71780.1| FliN [Agrobacterium tumefaciens] gi|159139682|gb|AAK86374.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str. C58] Length = 179 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 38/99 (38%), Positives = 71/99 (71%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + ++ + ++N ++IM+IP+ +QI+LG+ M +S L++L +G I LD+++ Sbjct: 79 AAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKI 138 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 GE V+I +N ++IA+GEIT++E+DDT FGV++IE+L+ + Sbjct: 139 GEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIEVLSTR 177 >gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684] gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684] Length = 130 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 59/106 (55%), Gaps = 6/106 (5%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + ++ P +++ ++ + ++ + ++PV++ + +G M + + L G Sbjct: 1 MSHEMELPAFDRPTAANGSHTGQ---NDLGRLSDVPVELAVEIGRTRMTVGETLELRPGS 57 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ L++ GE VD+ +N IA GE+ +++E+ FG+R+ ++L A Sbjct: 58 IVVLNRMAGEPVDLLVNGTPIAHGEVVVIDEE---FGLRITDVLGA 100 >gi|78224291|ref|YP_386038.1| flagellar motor switch FliN [Geobacter metallireducens GS-15] gi|78195546|gb|ABB33313.1| Flagellar motor switch FliN [Geobacter metallireducens GS-15] Length = 101 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 59/93 (63%), Gaps = 3/93 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + +++ E T N + I++IP+++ + LG + + +++ L++G V+ L K GE +D Sbjct: 4 LDNENLKDGELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLD 63 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +N++ +A+GE ++ E FG+R+++I++ Sbjct: 64 VFVNSKLVARGEAVVVNE---KFGIRLVDIVSP 93 >gi|51246521|ref|YP_066405.1| flagellar motor switch protein (FliN) [Desulfotalea psychrophila LSv54] gi|50877558|emb|CAG37398.1| probable flagellar motor switch protein (FliN) [Desulfotalea psychrophila LSv54] Length = 123 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E + + + D + ++P+++ + +G + I +L+N+ +G VI L+K G+ Sbjct: 23 ENTEQEHTTLENNEARSLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDP 82 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +D+ +N++ IA+GE ++ + FG+R+ ++++A Sbjct: 83 LDLYVNSRLIARGEAVMIGD---KFGIRLTDVVSA 114 >gi|312884903|ref|ZP_07744593.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367380|gb|EFP94942.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 138 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 67/119 (56%), Gaps = 8/119 (6%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 +D + + M Q +++++ SE +++ + D I++IPV + + +G Sbjct: 19 EDPDAPEIDVDEVMSAQLDELEDTSE-----QSSLSDDERRKIDSILDIPVTISMEVGRS 73 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + I NL+ L++G V+ L++ GES+D+ +N IA GE+ ++ + FG+R+ ++++ Sbjct: 74 QISIRNLLQLNQGSVVELERLAGESLDVLVNGTLIAHGEVVVVND---KFGIRLTDVIS 129 >gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] Length = 131 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 73/119 (61%), Gaps = 1/119 (0%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSC 86 ++N+++ +E K+D + + + + E + N + I+ IPV +Q++LGS Sbjct: 6 ESNLNNVAAANEAEPPKSDPASFGKLADLAARAVEETNRLTNLEPILRIPVTVQVLLGSA 65 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M +++L+ L +G VI LD RVGE V++ +N + +A+G + ++E++++ FGV + EI+ Sbjct: 66 TMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDENSRFGVSLTEIVG 124 >gi|325273550|ref|ZP_08139780.1| flagellar motor switch protein [Pseudomonas sp. TJI-51] gi|324101310|gb|EGB98926.1| flagellar motor switch protein [Pseudomonas sp. TJI-51] Length = 82 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D+I++IPV + + +GS + I NL+ L++G VI LD+ GE +D+ +N IA GE+ ++ Sbjct: 1 DVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVV 60 Query: 130 EEDDTHFGVRVIEILNA 146 E FG+R+ ++++ Sbjct: 61 NE---KFGIRLTDVISP 74 >gi|162147463|ref|YP_001601924.1| flagellar motor switch protein fliN [Gluconacetobacter diazotrophicus PAl 5] gi|209545572|ref|YP_002277801.1| flagellar motor switch protein FliN [Gluconacetobacter diazotrophicus PAl 5] gi|161786040|emb|CAP55622.1| putative flagellar motor switch protein fliN [Gluconacetobacter diazotrophicus PAl 5] gi|209533249|gb|ACI53186.1| flagellar motor switch protein FliN [Gluconacetobacter diazotrophicus PAl 5] Length = 125 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 6/121 (4%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGS 85 + + P E +EP S + ++ + + + +IPVK+ ++GS Sbjct: 2 STNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQKNGDGSGQMEAVYDIPVKITAVIGS 61 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M +S L+ L +G V+ LD+++GE+VDI NN+ IA+GE+ +++++ H GV + EI++ Sbjct: 62 ATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVVVDDN--HIGVTMTEIIS 119 Query: 146 A 146 + Sbjct: 120 S 120 >gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr] gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04] gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr] gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04] Length = 113 Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 65/105 (61%), Gaps = 4/105 (3%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G +I Sbjct: 11 EKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTII 69 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 TLDK GE VDI +N + +A+GE+ +++E +FGVR+ EI+ + Sbjct: 70 TLDKLAGEPVDILVNGKIVARGEVVVIDE---NFGVRITEIIKTK 111 >gi|296447444|ref|ZP_06889369.1| flagellar motor switch protein FliN [Methylosinus trichosporium OB3b] gi|296255064|gb|EFH02166.1| flagellar motor switch protein FliN [Methylosinus trichosporium OB3b] Length = 123 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 63/94 (67%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 S + ++ + + I+ IPV MQ+I+GS M +SNL+ L +G ++ LD+++GE VD Sbjct: 24 ASEEPRAGMDVDSRKLESILRIPVVMQVIVGSVTMPVSNLMKLGRGAIVPLDQKIGEPVD 83 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + +N + IA+GE+ ++E+D+T FGV + EI+ + Sbjct: 84 VVVNGRLIARGEVVVVEDDNTRFGVSLTEIIEPR 117 >gi|218679322|ref|ZP_03527219.1| putative flagellar motor switch protein [Rhizobium etli CIAT 894] Length = 178 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 43/97 (44%), Positives = 70/97 (72%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S + + NF+LIM+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE Sbjct: 80 SSSFEASPAPLGSALNSNFELIMDIPIDVQIMLGTNRMQVSGLMNLNEGATIALDKKIGE 139 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ + Sbjct: 140 PVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 176 >gi|320354330|ref|YP_004195669.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM 2032] gi|320122832|gb|ADW18378.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM 2032] Length = 126 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 58/116 (50%), Gaps = 3/116 (2%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 +V P ++ + ++ E T + + ++P+++ + +G + Sbjct: 5 DVLEPQRSNTLNTEETAELLKEEQPQPAGRGDHAPLTRELEFLFDVPLQVSVEVGRARIL 64 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +L+ + +G V+ LDK GE +D+ +N + IA+GE + + FG+++ E+++ Sbjct: 65 LKDLLQMGEGYVVELDKLAGEPLDLYVNARLIARGEAVKVGD---KFGIKLTEVVS 117 >gi|163844318|ref|YP_001621973.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445] gi|163675041|gb|ABY39151.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445] Length = 106 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L G V Sbjct: 2 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAV 61 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ITLDK++G+ VDI +N + IA+GE+ ++E+D FGV + EI+ Sbjct: 62 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSPRFGVSLTEIIGK 106 >gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1] gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1] Length = 113 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 +K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G + Sbjct: 10 AEKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTI 68 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ITLDK GE VDI +N + +A+GE+ +++E +FGVR+ EI+ + Sbjct: 69 ITLDKLAGEPVDILVNGKIVARGEVVVIDE---NFGVRITEIIKTK 111 >gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116] gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S] gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116] gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S] Length = 113 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 66/106 (62%), Gaps = 4/106 (3%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 ++K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G + Sbjct: 10 VEKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTI 68 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ITLDK GE VDI +N + +A+GE+ +++E +FGVR+ EI+ + Sbjct: 69 ITLDKLAGEPVDILVNGKIVARGEVVVIDE---NFGVRITEIIKTK 111 >gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 250 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 + S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G + D+ Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N + IA+GEI +++E+ +G+R+ EI++ Sbjct: 214 VNGRLIARGEIVVVDEE---YGIRITEIVS 240 >gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC 43063] gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC 43063] Length = 250 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 + S E+ ++ L+ ++ + + +G + + ++++LS G VI LD+ G + D+ Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +N + IA+GEI +++E+ +G+R+ EI++ Sbjct: 214 VNGRLIARGEIVVVDEE---YGIRITEIVS 240 >gi|227820848|ref|YP_002824818.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii NGR234] gi|227339847|gb|ACP24065.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii NGR234] Length = 210 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 61/90 (67%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE V+I +N Sbjct: 120 ETAPGSGMAANMDLIMDIPIDVQIVLGTSRMQVSGLMGLTEGATIALDRKIGEPVEIMVN 179 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + I +GEIT++E D T FGV++IEI ++ Sbjct: 180 GRVIGRGEITVLEGDVTRFGVKLIEIKGSR 209 >gi|83591881|ref|YP_425633.1| flagellar motor switch protein [Rhodospirillum rubrum ATCC 11170] gi|83574795|gb|ABC21346.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum rubrum ATCC 11170] Length = 115 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 62/100 (62%), Gaps = 3/100 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D +S+ S +S + + + +IPV++ +LG MQ++ L+ L +G V+ LD+ Sbjct: 16 ADGMSDDFSPPEIPDKPRSAADLEAVYDIPVQVSAVLGKAHMQVNQLLKLGRGAVVELDR 75 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +VGE++DI +NN+ +A+GE+ ++++ GV + EI+ + Sbjct: 76 KVGEAIDIYVNNRLVARGEVVVVDD---RLGVTMTEIIKS 112 >gi|58038896|ref|YP_190860.1| flagellar motor switch protein [Gluconobacter oxydans 621H] gi|58001310|gb|AAW60204.1| Flagellar motor switch protein FliN [Gluconobacter oxydans 621H] Length = 105 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 62/103 (60%), Gaps = 2/103 (1%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 D ++ + S +K+ ++ I +IPV + +LG M I+ L+ L +G V+ L Sbjct: 4 KDDFSVEKEQFSKEEISGDKTPNDLQAIYDIPVTLSAVLGRATMPINQLLKLGRGAVVEL 63 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 D+++G+ +DI +NN+ IA+GE+ +++E T GV + EI+ ++ Sbjct: 64 DRKIGDPIDILVNNRLIARGEVVMVDE--TRLGVTMTEIVKSE 104 >gi|2916786|emb|CAA11953.1| flagellar C-ring protein [Sinorhizobium meliloti] Length = 198 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 41/97 (42%), Positives = 68/97 (70%), Gaps = 1/97 (1%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + PI+ ++ T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE Sbjct: 102 AAPIAGETAP-GSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGE 160 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V+I +N + I +GEIT++E D T FGV+++EI ++ Sbjct: 161 PVEIMVNGRVIGRGEITVLEGDVTRFGVKLLEIKGSK 197 >gi|217976218|ref|YP_002360365.1| flagellar motor switch protein FliN [Methylocella silvestris BL2] gi|217501594|gb|ACK49003.1| flagellar motor switch protein FliN [Methylocella silvestris BL2] Length = 110 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 37/91 (40%), Positives = 59/91 (64%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 + + N + I+ IPV +Q++LGS M +S+L+ L +G VI LD RVGE VD+ Sbjct: 15 GEEPPGRANVSRNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVV 74 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + IA+GEI ++E+D++ FGV + EI+ Sbjct: 75 VNGRIIARGEIVVVEDDNSRFGVSLTEIVGP 105 >gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a] gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805] gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805] gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1] Length = 113 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 4/105 (3%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G +I Sbjct: 11 EKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTII 69 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 TLDK GE VDI +N + +AKGE+ +++E +FGVR+ EI+ + Sbjct: 70 TLDKLAGEPVDILVNGKIVAKGEVVVIDE---NFGVRITEIIKTK 111 >gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermodesulfobium narugense DSM 14796] gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermodesulfobium narugense DSM 14796] Length = 386 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 59/89 (66%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + + N + ++NIP+++ + LG+ M + +++ L G VI L+K GE++++ IN+ Sbjct: 295 QPSPQGDSINIENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMIND 354 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + IA+GE+ +++E +FG+R+ EI++ + Sbjct: 355 ELIARGEVVVIDE---NFGIRITEIISPR 380 >gi|15964405|ref|NP_384758.1| flagellar motor switch protein [Sinorhizobium meliloti 1021] gi|15073582|emb|CAC45224.1| Flagellar motor switch protein [Sinorhizobium meliloti 1021] Length = 210 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 41/97 (42%), Positives = 66/97 (68%), Gaps = 1/97 (1%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + PI ++ T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE Sbjct: 114 AAPIVGETAP-GSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGE 172 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V+I +N + I +GEIT++E D T FGV+++EI + Sbjct: 173 PVEIMVNGRVIGRGEITVLEGDVTRFGVKLLEIKGTK 209 >gi|302387781|ref|YP_003823603.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1] gi|302198409|gb|ADL05980.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium saccharolyticum WM1] Length = 456 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 58/98 (59%), Gaps = 3/98 (3%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +V I + + E+ +N +LIM +P+++ + +G + ++ +KG ++ LD Sbjct: 356 NVKPIPQNSLREGEANYEEQEENRELIMGVPLEVSVEIGRTRKLVKEILEFTKGSLVILD 415 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 K GE VD+ +N + IAKG++ ++++ +FG+R+ EI Sbjct: 416 KLAGEQVDLYVNGRCIAKGDVVVVDD---NFGIRITEI 450 >gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31] gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a] gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7] gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a] gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b] gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23] gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a] gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a] gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a] gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1] gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26] gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi] gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi] gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31] gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a] gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7] gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a] gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b] gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23] gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a] gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a] gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a] gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1] gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26] gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40] Length = 113 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 4/105 (3%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +K ++ + P D+ + NF L+M++ +++ + LG +I +++ +S+G +I Sbjct: 11 EKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQLTVELGRTERKIKDILGMSEGTII 69 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 TLDK GE VDI +N + +AKGE+ +++E +FGVR+ EI+ + Sbjct: 70 TLDKLAGEPVDILVNGKIVAKGEVVVIDE---NFGVRITEIIKTK 111 >gi|115522993|ref|YP_779904.1| flagellar motor switch protein [Rhodopseudomonas palustris BisA53] gi|115516940|gb|ABJ04924.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] Length = 116 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 10/120 (8%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 DT V P NS + DVD E +S + + + + ++PV++ +LG Sbjct: 5 DTKVPLPDLNSGDVPAMTDVDYNDEEHAS-------RVAADLEAVFDVPVQVSAVLGRSK 57 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 M + L+ L G V+ LD++VGE++DI +NN+ IA+GE+ ++E+ GV + EI+ A+ Sbjct: 58 MDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLIARGEVVLVED---KLGVTMTEIIAAE 114 >gi|299131951|ref|ZP_07025146.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2] gi|298592088|gb|EFI52288.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2] Length = 119 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + + + + + S+ + + + + ++PV++ +LG M +S+L+ L G Sbjct: 13 PDLNETEAPPLDQAAYSEEEERSARIASDLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPG 72 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+ Sbjct: 73 TVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 117 >gi|203284198|ref|YP_002221938.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|203287737|ref|YP_002222752.1| flagellar motor switch protein [Borrelia recurrentis A1] gi|201083641|gb|ACH93232.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|201084957|gb|ACH94531.1| flagellar motor switch protein [Borrelia recurrentis A1] Length = 114 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 68/113 (60%), Gaps = 4/113 (3%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + ++ +K ++ + P DS + NF L+M++ +++ + LG +I +++ Sbjct: 4 DDKNDFSEEKPEIKGVKLPDLIDSLPEGVDPS-NFGLLMDVSMQVTVELGRTERKIKDIL 62 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +S+G +ITLDK GE VDI +N + +AKGE+ +++E +FGVR+ EI+ + Sbjct: 63 AMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE---NFGVRITEIIKIK 112 >gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum ferrodiazotrophum] Length = 125 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 67/124 (54%), Gaps = 8/124 (6%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D PL + ++ ++ + + EP + ++ + D ++++P+ + + Sbjct: 3 DEPLDEEALAR-AWEEDLAKGAAEEEKAPEP----ALPRTHEAPLSLDYLLDVPLTISVR 57 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 +G M I +L+ L +G V+ LDK GE +++ IN+Q +A+G++ ++ + +G+R+ + Sbjct: 58 VGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVVLVND---KYGIRLTD 114 Query: 143 ILNA 146 I++ Sbjct: 115 IVSP 118 >gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3] gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3] Length = 116 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + E + E S+ + + + DL+M++ V + + +G + I +L+ Sbjct: 1 MSDEETTEAVAAQPPEELHSTAAPSPSAGGKIDLDLLMDVQVTLSVEIGRTRLPIKDLLA 60 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L++G +++LD+ V E +D+ +N IA+GE+ E FG+R+I++++ Sbjct: 61 LNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV---ESAGQFGLRLIDVVSP 108 >gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855] gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855] Length = 250 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 64/125 (51%), Gaps = 8/125 (6%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-----FDLIMNIPVKMQI 81 Q + S P ++ D + ++ S E+ + + F L+ ++ +++++ Sbjct: 121 QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFKLLADVDLEVRV 180 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 LG + +++++ L+ G V+ L+K VGE + + N + IA+GE +++E FGVR+ Sbjct: 181 ELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDE---QFGVRIT 237 Query: 142 EILNA 146 + + Sbjct: 238 NLASE 242 >gi|86748400|ref|YP_484896.1| flagellar motor switch protein [Rhodopseudomonas palustris HaA2] gi|86571428|gb|ABD05985.1| Flagellar motor switch FliN [Rhodopseudomonas palustris HaA2] Length = 116 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D V P N DV E +S + + + + ++PV++ +LG Sbjct: 5 DGQVPLPDLNGADAPPLADVGYHEEEQTS-------RVAADLEAVFDVPVQVSAVLGRSK 57 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+ Sbjct: 58 MDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114 >gi|296534812|ref|ZP_06897160.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] gi|296264860|gb|EFH11137.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] Length = 110 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 58/94 (61%), Gaps = 2/94 (2%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P + ++ + + + +IPV++ +LG MQ+S L+ L +G V+ LD+++GE+V Sbjct: 15 PEAPEAEPRRTGGVGDLNAVYDIPVQVSAVLGRATMQVSQLLKLGRGAVVELDRKLGEAV 74 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 DI +NN+ +A+GE+ ++ E+ GV + EI+ Sbjct: 75 DIYVNNRLVARGEVVMVGEN--RLGVTMTEIVKT 106 >gi|119953076|ref|YP_945285.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135] gi|119861847|gb|AAX17615.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135] Length = 114 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 69/113 (61%), Gaps = 4/113 (3%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + S++ +K ++ + P D+ + NF L+M++ +++ + LG +I +++ Sbjct: 4 DDKSDIGEEKPEIKGVKLPDLIDTLPEGVDPS-NFGLLMDVSMQVTVELGRTERKIKDIL 62 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +S+G +ITLDK GE VDI +N + IAKGE+ +++E +FGVR+ EI+ + Sbjct: 63 GMSEGTIITLDKLAGEPVDILVNGKVIAKGEVVVIDE---NFGVRITEIIKIK 112 >gi|91978306|ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5] gi|91684762|gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5] Length = 116 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 7/116 (6%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTD----NFDLIMNIPVKMQIILGSCCMQIS 91 ++ + D+++ P+ +D E+ T + + + ++PV++ +LG M + Sbjct: 2 GENDGQVPLPDLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVG 61 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+ Sbjct: 62 ELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114 >gi|319781691|ref|YP_004141167.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167579|gb|ADV11117.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 128 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 1/117 (0%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 + ++ P + I++ + E S+ N +IMNIPV +QIILGS Sbjct: 7 EADLDQPDEQLDRAIEELRG-VLHEEEQRPDAAFRAASSANSSVIMNIPVDIQIILGSTE 65 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 M +S+L+ L KG + L++R+GE VD+ +N +KIA+GEIT++E D + FG+R+ EI+ Sbjct: 66 MPVSDLMALQKGSTVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122 >gi|148260473|ref|YP_001234600.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5] gi|146402154|gb|ABQ30681.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5] Length = 132 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 67/118 (56%), Gaps = 3/118 (2%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 T + N + ++ + +S + D ++ + + + + ++PV + +LG M Sbjct: 14 TTPTGEPNGNGQVLSDLPLAPVSRRTAGDGPE-TQRPSRDLEAVYDVPVLVSAVLGRSTM 72 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 Q+S L+ L +G V+ LD++ G+ +DI +NN+ IA+GE+ +++E T G+ + EI+ + Sbjct: 73 QVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIARGEVVMLDE--TKLGITMTEIVKS 128 >gi|114706763|ref|ZP_01439663.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Fulvimarina pelagi HTCC2506] gi|114537711|gb|EAU40835.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Fulvimarina pelagi HTCC2506] Length = 131 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 + + P + + +D + + DL++++ V MQ++LGS M Sbjct: 3 DPNDPHGSEIEHSGQPYMDEEGGEEDDRRPDFRGADKMDLDLVLDVSVTMQVVLGSARMS 62 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +S L+ L++G ++ LD +VG+ +D+ +N + IA+GEI ++++DD FGV + E+ Sbjct: 63 VSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIVVLDQDDQQFGVTLTEVATP 119 >gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8] gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8] Length = 236 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 64/125 (51%), Gaps = 8/125 (6%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-----FDLIMNIPVKMQI 81 Q + S P ++ D + ++ S E+ + + F L+ ++ +++++ Sbjct: 107 QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFKLLADVDLEVRV 166 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 LG + +++++ L+ G V+ L+K VGE + + N + IA+GE +++E FGVR+ Sbjct: 167 ELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDE---QFGVRIT 223 Query: 142 EILNA 146 + + Sbjct: 224 NLASE 228 >gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1] gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N] gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1] gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N] Length = 98 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R +I+ + Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92 >gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17029] gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17029] Length = 98 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R +I+ + Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92 >gi|209884355|ref|YP_002288212.1| flagellar motor switch phosphatase FliY [Oligotropha carboxidovorans OM5] gi|209872551|gb|ACI92347.1| flagellar motor switch phosphatase FliY [Oligotropha carboxidovorans OM5] Length = 119 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 67/118 (56%), Gaps = 8/118 (6%) Query: 35 TNNSEMLIQKNDVDNISEP-----ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 N+ + + D++ I P +D + + + + ++PV++ +LG M Sbjct: 3 ENDGQDQVPLPDLNAIEAPPLDQAAYADDEERSARIASDLEAVFDVPVQVSAVLGRSKMD 62 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +S+L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+ Sbjct: 63 VSDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 117 >gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium BAC17H8] Length = 110 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 3/106 (2%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + ++ ++ + + D+ S +N L+ NI V + + +G ++I +L+ L++G Sbjct: 1 MSEETELAEDAATETMDAETAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGS 60 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 VI LD+ G+ +DI N IAKGE+ ++ E FG+R EI++ Sbjct: 61 VIELDRLAGDPLDILANGTMIAKGEVVMVGE---RFGIRFTEIVDP 103 >gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus 11B] gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus 11B] Length = 123 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 8/105 (7%) Query: 47 VDNISEPISS-----DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 V + SEP S + + +L+ N+ + + LG M + L++L+ G V Sbjct: 15 VGDSSEPAESVSPVNSAASAQTVRASRLELLQNVEMGVTAELGRTRMTVRELLSLAPGMV 74 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + L++ G +D+ +N IA+GE+ +++E+ FGVR+ EI+ Sbjct: 75 VELNRAAGSPIDLYVNGTLIARGEVVVIDEE---FGVRISEIVGP 116 >gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17025] gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17025] Length = 98 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +N L+ NI V++ + +G M I +L+ LS+G V+ LD+ G+ +D+ +N IAKG Sbjct: 13 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 72 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++ E FG+R +I+ + Sbjct: 73 EVVMVGE---RFGIRFGQIIEPE 92 >gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827] gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827] Length = 250 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +L+ + +++ LG + + L++LS G VI LD+ G D+ +N + IA+GE+ + Sbjct: 168 LELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVV 227 Query: 129 MEEDDTHFGVRVIEILNA 146 ++E +FG+RV EI+ Sbjct: 228 IDE---NFGIRVTEIIKP 242 >gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] Length = 110 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 K+ + + + ++PV + +LGS M I +L+ L+ G V+ LD++VGE++D+ +NN Sbjct: 25 APTTPKTAADLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNN 84 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + +A+GE+ ++E+ GV + EI+ + Sbjct: 85 RLVARGEVVLVED---RLGVTMTEIVKGE 110 >gi|326403666|ref|YP_004283748.1| flagellar motor switch protein FliN [Acidiphilium multivorum AIU301] gi|325050528|dbj|BAJ80866.1| flagellar motor switch protein FliN [Acidiphilium multivorum AIU301] Length = 106 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 58/93 (62%), Gaps = 2/93 (2%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 ++ ++ + + + + ++PV + +LG MQ+S L+ L +G V+ LD++ G+ +D Sbjct: 12 RTAGDGPETQRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPID 71 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I +NN+ IA+GE+ +++E T G+ + EI+ + Sbjct: 72 IFVNNRLIARGEVVMLDE--TKLGITMTEIVKS 102 >gi|307311547|ref|ZP_07591188.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C] gi|307318902|ref|ZP_07598333.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83] gi|17380371|sp|O54245|FLIN_RHIME RecName: Full=Flagellar motor switch protein FliN gi|306895316|gb|EFN26071.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83] gi|306899564|gb|EFN30193.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C] Length = 198 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 41/97 (42%), Positives = 66/97 (68%), Gaps = 1/97 (1%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + PI ++ T N DLIM+IP+ +QI+LG+ MQ+S L+ L++G I LD+++GE Sbjct: 102 AAPIVGETAP-GSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGE 160 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V+I +N + I +GEIT++E D T FGV+++EI + Sbjct: 161 PVEIMVNGRVIGRGEITVLEGDVTRFGVKLLEIKGTK 197 >gi|23015636|ref|ZP_00055406.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magnetotacticum MS-1] Length = 108 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ND E + +S + + + +IPV++ +LG MQ++ L+ L +G V+ L Sbjct: 7 NDFKPDGEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVEL 66 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ Sbjct: 67 DRKVGEAIDIYVNNRLVARGEVVVVED---RLGVTMTEIIKT 105 >gi|187918151|ref|YP_001883714.1| flagellar motor switch protein FliN [Borrelia hermsii DAH] gi|119860999|gb|AAX16794.1| flagellar motor switch protein FliN [Borrelia hermsii DAH] Length = 114 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 68/113 (60%), Gaps = 4/113 (3%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + +++ +K ++ + P D+ + N L+M++ +++ + LG +I +++ Sbjct: 4 DDKNDVGEEKPEIKGVKLPDLIDTLPEGVDPS-NLGLLMDVSMQVTVELGRTERKIKDIL 62 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +S+G +ITLDK GE VDI +N + +AKGE+ +++E +FGVR+ EI+ + Sbjct: 63 GMSEGTIITLDKLAGEPVDILVNGKVVAKGEVVVIDE---NFGVRITEIIKIK 112 >gi|144233|gb|AAA23038.1| putative [Caulobacter crescentus CB15] Length = 101 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 S + +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++D Sbjct: 8 ASEAPIELSDKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAID 67 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I +NN+ +A+GE+ +++E GV + EI+ Sbjct: 68 IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 96 >gi|148253397|ref|YP_001237982.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1] gi|146405570|gb|ABQ34076.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1] Length = 115 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 60/107 (56%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + D +S+ + + + + + + ++PV++ +LG M + L+ L G Sbjct: 9 PDLNSADAPPLSDDVGYNEEEHASRIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPG 68 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 V+ LD++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ + Sbjct: 69 TVLELDRKVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKS 112 >gi|315497631|ref|YP_004086435.1| flagellar motor switch protein flin [Asticcacaulis excentricus CB 48] gi|315415643|gb|ADU12284.1| flagellar motor switch protein FliN [Asticcacaulis excentricus CB 48] Length = 110 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + + ++ K+ + + ++PV + +LG M +S L+ L +G V+ LD++VGE+ Sbjct: 14 QAMVPGGDDEGTKAAADLAPVFDVPVNISAVLGKAYMSVSQLLKLGQGSVLELDRKVGEA 73 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +DI +NN+ +A+GE+ +++E GV + EI+ ++ Sbjct: 74 IDIYVNNRLVARGEVVVVDE---RLGVTMTEIIKSE 106 >gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4] gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4] Length = 112 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 64/105 (60%), Gaps = 3/105 (2%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 I ++++ + P D + + + + ++PV++ +LGS M +S+L+ L+ G V Sbjct: 9 IPLDELEVPAAPSEEDGATGATQGAGDLEAVFDVPVRISAVLGSSKMHVSDLLKLASGTV 68 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + LD++VGE++DI +N++ +A+GE+ ++E+ GV + EI+ Sbjct: 69 LELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIKT 110 >gi|16125160|ref|NP_419724.1| flagellar motor switch protein [Caulobacter crescentus CB15] gi|221233890|ref|YP_002516326.1| flagellar motor switch protein [Caulobacter crescentus NA1000] gi|462113|sp|Q03593|FLIN_CAUCR RecName: Full=Flagellar motor switch protein FliN gi|144250|gb|AAA66328.1| flagellar switch protein [Caulobacter crescentus CB15] gi|13422174|gb|AAK22892.1| flagellar motor switch protein FliN [Caulobacter crescentus CB15] gi|220963062|gb|ACL94418.1| flagellar motor switch protein FliN [Caulobacter crescentus NA1000] Length = 110 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 S + +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++D Sbjct: 17 ASEAPIELSDKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAID 76 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I +NN+ +A+GE+ +++E GV + EI+ Sbjct: 77 IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 105 >gi|116626505|ref|YP_828661.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus Ellin6076] gi|116229667|gb|ABJ88376.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus Ellin6076] Length = 282 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 71/140 (50%), Gaps = 11/140 (7%) Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67 +S+ + L + PL +S + + + D EP + N++ Sbjct: 147 LSFGETTLVPLWIGFSAPL----ISVICSPAAGQPEAAPEDAGGEPHTVKRNDM----PP 198 Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +L++++ + + I G + + +++ L+ G ++ L++ V E V++ +N+ IA+GE+ Sbjct: 199 TMELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELNRGVNEPVEVLVNHCLIARGEVV 258 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++E ++GVR+ +I+N Q Sbjct: 259 VVE---GNYGVRIQQIVNRQ 275 >gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252] gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252] Length = 293 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 N +L+ ++ +++ + LG + +++++ L+ G +I L+K VGE ++I N + IA+GE Sbjct: 207 KGNLELLADVELEIVVELGRRRLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGE 266 Query: 126 ITIMEEDDTHFGVRVIEILN 145 +++E FGVR+ ++ Sbjct: 267 AVVIDE---QFGVRITSLVT 283 >gi|90422463|ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18] gi|90104477|gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18] Length = 116 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D+ V P NS DV + S + + + + ++PV++ +LG Sbjct: 5 DSQVPLPDLNSADAPPLGDVGYSDDEQVS-------RIAADLEAVFDVPVQVSAVLGRSK 57 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 M + L+ L G V+ LD++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+ Sbjct: 58 MDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114 >gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter desulfuricans SSM1] gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter desulfuricans SSM1] Length = 292 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 59/109 (54%), Gaps = 3/109 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + +DV + N S N DL++++ + + + +GS M + +++ L Sbjct: 178 ETSSEKTDDVPDFVPFEEGFEQNSSYDSGGNIDLLLDVEIPVSVKIGSTKMYLKDILELG 237 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G +I L++ E V++ +NN+ IA+GE+ +++ +FG+R+ EI++ Sbjct: 238 PGKIIELEEYADEPVELLVNNKVIARGEVVVVD---GYFGLRIQEIVSK 283 >gi|295690737|ref|YP_003594430.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756] gi|295432640|gb|ADG11812.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756] Length = 110 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 56/92 (60%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 S I +K+ + + ++PV + +LG M ++ L+ L +G ++ LD++VGE++D Sbjct: 17 ASEMPVEIADKTASDLAPVFDVPVNISAVLGRAHMSVAQLLQLGQGSILELDRKVGEAID 76 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I +NN+ +A+GE+ +++E GV + EI+ Sbjct: 77 IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 105 >gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 416 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 4/114 (3%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISN 92 P +M Q++ ++ S DS + + +N DLI ++ +++ + LG I+ Sbjct: 299 PMQYEQMPSQQSVRVQQAQFSSFDSLAMSNIQVPENMDLIKDVMLQITVELGKTVKPINE 358 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +++ G V+ LDK VGES+DI N +KIA GE+ +++E ++G+R+ +I+ Sbjct: 359 ILDFKPGSVLELDKVVGESLDILANGKKIATGEVVVIDE---NYGIRITDIVKP 409 >gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] Length = 84 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 3/74 (4%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 M++ + + + LG + I ++ L +G +I L K GE VD+ +N + IAKGE+ +++E Sbjct: 1 MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEC 60 Query: 133 DTHFGVRVIEILNA 146 FGVRV +I+++ Sbjct: 61 ---FGVRVTDIVDS 71 >gi|75674794|ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255] gi|74419664|gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter winogradskyi Nb-255] Length = 116 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 10/120 (8%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 DT V P N+ +DV + + + + + + ++PV++ +LG Sbjct: 5 DTQVPLPDLNAADAPSIDDVG-------YSEDEQVSRVASDLEAVFDVPVQVSAVLGRSR 57 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+ Sbjct: 58 MDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114 >gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] Length = 112 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + ++ + + P + + DL+M++PV + + +G M I L+ L+ G Sbjct: 1 MAEEQEDMTTATPPELSEGAVEGTGEIDLDLLMDVPVYLTVEVGRRRMTIKELLALASGS 60 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V+T D+ V E +D+ +N +A+GE+ + FG+R++++++ + Sbjct: 61 VVTFDRSVTEPMDLMVNGTLVARGEVV---SAEGQFGLRLVDVVSPK 104 >gi|288960027|ref|YP_003450367.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] gi|288912335|dbj|BAI73823.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] Length = 105 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN Sbjct: 18 EYTSPGIAKDLEAVYDIPVQISAVLGKSTMQVAQLLKLGRGAVVELDRKVGEAIDIYVNN 77 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +A+GE+ ++E+ G+ + EI+ + Sbjct: 78 RLVARGEVVVVED---RLGITMTEIIKS 102 >gi|146342732|ref|YP_001207780.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278] gi|146195538|emb|CAL79565.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278] Length = 115 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + D I+ + + + + ++PV++ +LG M + L+ L G Sbjct: 9 PDLNSADAPPITGDTGYTEEEHAARIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPG 68 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 V+ LD++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ + Sbjct: 69 TVLELDRKVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKS 112 >gi|85713558|ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85699462|gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 116 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 10/120 (8%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 DT V P N+ +DV + + + + + + ++PV++ +LG Sbjct: 5 DTQVPLPDLNAADAPTIDDVG-------YSEDEQVSRVASDLEAVFDVPVQVSAVLGRSR 57 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+ Sbjct: 58 MDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114 >gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1] gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1] Length = 164 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 3/102 (2%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + + ++ T D +M+IP+ +++++G +QI L+NL G V+ LD Sbjct: 51 PAEAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELD 110 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + E VDI +N + IAKGE+ ++ E FGVR+ EI + + Sbjct: 111 RETTEPVDIKVNGKLIAKGELVVVGE---KFGVRITEIYSEE 149 >gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] Length = 115 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 3/93 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P S K+ + + + ++PV + +LGS M I +L+ L G V+ LD++VGE++ Sbjct: 23 PGSVRDAPTSPKNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAI 82 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 DI +NN+ +A+GE+ +++E GV + EI+ Sbjct: 83 DIFVNNRLVARGEVVLVDE---RLGVTMTEIIK 112 >gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073] gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC 39073] Length = 395 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 56/83 (67%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 S+ N DLI+++P+ +++ILG+ +I ++++L+ G ++ LD+ V E V IT+N IA+ Sbjct: 307 ASSRNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQ 366 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ I+ E +FGVR+ IL Sbjct: 367 GEVVIVNE---NFGVRITHILEP 386 >gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM 3776] gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM 3776] Length = 189 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 5/134 (3%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 + +L + L + P N + + E + D Sbjct: 58 EQSLRQAEQQLAAALSEELP--PRNMRGLPPGEAPARFEFEEFGTPFPTRAAAPVFPLDA 115 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++ + ++I LG + I ++ L +G V+ LDK G+ VDI +N + +A+GE+ ++ + Sbjct: 116 LQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVLND 175 Query: 132 DDTHFGVRVIEILN 145 +F VR+ EIL Sbjct: 176 ---NFCVRIAEILT 186 >gi|83309599|ref|YP_419863.1| flagellar motor switch protein [Magnetospirillum magneticum AMB-1] gi|82944440|dbj|BAE49304.1| Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magneticum AMB-1] Length = 108 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ND E + +S + + + +IPV++ +LG MQ++ L+ L +G V+ L Sbjct: 7 NDFKPEVEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVEL 66 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D++VGE++DI +NN+ +A+GE+ ++E+ GV + EI+ Sbjct: 67 DRKVGEAIDIYVNNRLVARGEVVVVED---RLGVTMTEIIKT 105 >gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium SS3/4] Length = 445 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 58/99 (58%), Gaps = 3/99 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + + P S + + + N +++M +P+++ + +G + +++ ++G ++ LDK Sbjct: 342 IRPANAPGLESSGSENGEESANQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLVVLDK 401 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 GE D+ +N Q +A+G+I ++E+ +FG+R+ +I+ Sbjct: 402 MAGEQADLYVNGQCVARGDIVVVED---NFGIRITDIVT 437 >gi|56384263|gb|AAV85781.1| FliN [Azospirillum brasilense] Length = 109 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + + + +IPV++ +LG MQ+S L+ L +G V+ LD++VGE++DI +NN+ +A+ Sbjct: 27 GPAKDLEAVYDIPVQISAVLGKSTMQVSQLLKLGRGAVVELDRKVGEAIDIYVNNRLVAR 86 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ ++E+ G+ + EI+ + Sbjct: 87 GEVVVVED---RLGITMTEIIKS 106 >gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1] gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4] gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1] gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4] Length = 115 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 3/93 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P S K+ + + + ++PV + +LGS M I +L+ L G V+ LD++VGE++ Sbjct: 23 PGSVRDAPTSPKNAADLEQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAI 82 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 DI +NN+ +A+GE+ ++EE GV + EI+ Sbjct: 83 DIFVNNRLVARGEVVLVEE---RLGVTMTEIIK 112 >gi|92116306|ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14] gi|91799200|gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14] Length = 116 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 DT V P N+ +D+ + + + + + + ++PV++ +LG Sbjct: 5 DTQVPLPDLNAADTPAIDDIG-------YSEDEQVSRIASDLEAVFDVPVQVSAVLGRSK 57 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A+ Sbjct: 58 MDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKAE 114 >gi|27382113|ref|NP_773642.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] gi|27355283|dbj|BAC52267.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] Length = 116 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D V P N M DV + + ++ + + + ++PV++ +LG Sbjct: 5 DGQVPLPDLNGPMPPTGTDVG-------YNEDEYAARAAADLEAVFDVPVQVSAVLGRSK 57 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ + Sbjct: 58 MDVGELLKLGPGTVLELDRRVGEAIDIYVNNKLVARGEVVLVED---KLGVTMTEIIKTE 114 >gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides ATCC 15264] gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides ATCC 15264] Length = 109 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + +KS + + ++PV + +LG M ++ L+ L++G V+ LD++VGE++DI +NN Sbjct: 20 DEAGDKSAADLATVFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNN 79 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + +A+GE+ ++E+ GV + EI+ + Sbjct: 80 RLVARGEVVVVED---RLGVTMTEIIKTE 105 >gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula baltica SH 1] gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula baltica SH 1] gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula baltica WH47] Length = 141 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 5/119 (4%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSD--SNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 N +S + + +++ ++ P + S N L ++ + DL+ + + ++I LG Sbjct: 24 NEASQSLAAATGDKESTERDVPRPFALGDLSPNSLGEAAHDVDLLGEVEMDLRIELGRTQ 83 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 M++ ++ L G V+ LDK G+ VDI +N + IA+GE+ +M + +F VRV E++ A Sbjct: 84 MRLEEVLRLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVMND---NFCVRVTELVGA 139 >gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus A6] gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus A6] Length = 238 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 LI N+ + + + +G M + + + L G VI LD+ G D+ +N + IA GE Sbjct: 156 PARLSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGE 215 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + ++++D + VR+ IL+ Sbjct: 216 VVVVDQD---YAVRITRILDT 233 >gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT 1] gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT 1] Length = 141 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 3/90 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + N +S N + I++IP+++ + LG I ++V+L+ G ++ D+ VGE VDIT+N Sbjct: 48 AANAGMQSHPNLERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLN 107 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + IA+GE+ ++ E HFGVR+ +I+ Q Sbjct: 108 GKLIARGEVVVVGE---HFGVRISQIITPQ 134 >gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130] gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130] Length = 171 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 74/133 (55%), Gaps = 5/133 (3%) Query: 19 SMHIDNPLQD-TNVSSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIM 73 + +D P ++ T +SP + D D +++ ++ + S + + D + + Sbjct: 2 TSELDGPAEEVTQTTSPEIEGAPATPRYDFDKVADALADVSPAASRSPVSPKRDATNSLW 61 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IP+ + ++LG + +S+L+NLS GD ++LD+R+G+ V+I N IA G++ ++E Sbjct: 62 SIPLDVDVVLGHARLPVSDLMNLSIGDTLSLDRRIGDPVEIVANGTTIAWGQLCAVDESG 121 Query: 134 THFGVRVIEILNA 146 FGVR+ ++ A Sbjct: 122 ERFGVRLTKLSGA 134 >gi|84514808|ref|ZP_01002171.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis SKA53] gi|84510967|gb|EAQ07421.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis SKA53] Length = 102 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + + + + TD + NI V+M + +G + IS L+ L++G V+ LD+ GE Sbjct: 3 EQKMENQDKDPKGPETDKLRALENIEVEMSVEVGRTEISISELLRLNEGSVVELDRLAGE 62 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +DI +N IAKGEI ++ E FG+R +I++ + Sbjct: 63 PLDILVNGTLIAKGEIVMVGE---RFGIRFSDIVDPE 96 >gi|39934342|ref|NP_946618.1| flagellar motor switch protein [Rhodopseudomonas palustris CGA009] gi|192289870|ref|YP_001990475.1| flagellar motor switch protein [Rhodopseudomonas palustris TIE-1] gi|316935485|ref|YP_004110467.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris DX-1] gi|39648190|emb|CAE26710.1| putative flagellar motor switch protein [Rhodopseudomonas palustris CGA009] gi|192283619|gb|ACE99999.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris TIE-1] gi|315603199|gb|ADU45734.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris DX-1] Length = 115 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 10/119 (8%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D V P N DV + + + + + + ++PV++ +LG Sbjct: 5 DGQVPLPDLNGADAPPLADVG-------YQEDEQISRVAADLEAVFDVPVQVSAVLGRSK 57 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 M + L+ L G V+ LD+RVGE++DI +NN+ +A+GE+ ++E+ GV + EI+ A Sbjct: 58 MDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVED---KLGVTMTEIIKA 113 >gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256] gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256] Length = 111 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 3/102 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 DV + + +D + + NFDL+ + +++ + +GS M ++ L+ L +G VI L Sbjct: 2 TDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIEL 61 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 D+ + +DI N IAKGEI ++ +G++V E++ Sbjct: 62 DRAATDLLDIYANGTLIAKGEIVSVD---GRYGIQVAEVVAP 100 >gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] Length = 116 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 KS + + + ++PV + +LG+ M + +L+ L G V+ LD++VGE++DI +NN Sbjct: 30 GPPAPKSAADLEQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNN 89 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +A+GE+ ++EE GV + EI+ + Sbjct: 90 RLVARGEVVLVEE---RLGVTMTEIVKS 114 >gi|144897407|emb|CAM74271.1| flagellar motor switch protein [Magnetospirillum gryphiswaldense MSR-1] Length = 107 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +S + + + +IPV++ +LG MQ++ L+ L +G V+ LD++VGE++DI +NN+ + Sbjct: 23 GPRSARDLEAVYDIPVQVSAVLGKANMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLV 82 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 A+GE+ ++E+ GV + EI+ Sbjct: 83 ARGEVVVVED---RLGVTMTEIIKT 104 >gi|209963529|ref|YP_002296444.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|209956995|gb|ACI97631.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 119 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + D I N+PV +Q++LG M +S L+ L +G V+ L+++VGE+VD+ +N++ IA+ Sbjct: 34 QDRDELRAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIAR 93 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 GE+ I+++ GV + EI+ A+ Sbjct: 94 GEVVIVDD--GRLGVTMTEIVKAE 115 >gi|317051534|ref|YP_004112650.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] gi|316946618|gb|ADU66094.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] Length = 330 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 57/87 (65%), Gaps = 3/87 (3%) Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + ++ N +++++I + + I +GS + + +L+ L G ++ LDK+ G+ V++ +N + Sbjct: 239 LNKEQMRNIEMLLDIDLAVIIRIGSTKIYLKDLLKLGSGSIVELDKKAGDPVELVVNKKV 298 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 IA+GE+ +++ +FG+R+ EIL+ + Sbjct: 299 IARGEVVVID---ANFGLRINEILSKR 322 >gi|167644980|ref|YP_001682643.1| flagellar motor switch protein [Caulobacter sp. K31] gi|167347410|gb|ABZ70145.1| flagellar motor switch protein FliN [Caulobacter sp. K31] Length = 111 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 S + +K + + ++PV + +LG M ++ L+ LS G ++ LD++VGE++D Sbjct: 17 ASEMPIELSDKIASDLAPVFDVPVNISAVLGRAHMSVAQLLQLSAGSILELDRKVGEAID 76 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I +NN+ +A+GE+ +++E GV + EI+ Sbjct: 77 IYVNNRLVARGEVVVVDE---RLGVTMTEIIK 105 >gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068] gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068] Length = 212 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + +L+ ++ + ++I LG M + +++ L +G V+TLDK G+ VDI +N Sbjct: 123 AAAPPSGEKATLELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVN 182 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILN 145 + IA+GE+ ++ + +F VRV E+L+ Sbjct: 183 GRLIARGEVLVLND---NFCVRVAELLS 207 >gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484] gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484] Length = 125 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 62/113 (54%), Gaps = 7/113 (6%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + L ++ + + DS ++ EK + IP+++++++G +++ L+ Sbjct: 13 SMWEQALKEQQEAEGRHGEGQGDSQDLSEKVRR----FLEIPLELEVVIGRTTLKLGELL 68 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +L G V+ LD V VDI +N + +AKGEI ++E+ FGVR+ +I+ + Sbjct: 69 HLGPGSVVELDNHVESPVDILVNGKLVAKGEIVVVED---KFGVRITDIIARE 118 >gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS 2060] gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS 2060] Length = 116 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 KS + + + ++PV + +LG+ M I +L+ L G V+ LD++VGE++DI +NN Sbjct: 30 GPPSPKSAADLEQVFDVPVVVSAVLGASRMPIGDLLRLGPGTVLELDRKVGEAIDIYVNN 89 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +A+GE+ ++EE GV + EI+ + Sbjct: 90 RLVARGEVVLVEE---RLGVTMTEIVKS 114 >gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM 43160] gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM 43160] Length = 249 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + DL+ ++ +++ + +G M + L++L G+V+ LD+ D+ +N Sbjct: 155 PQARTQRGSLDLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGT 214 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILN 145 IA+GE+ +++ED FG+R+ EI+ Sbjct: 215 LIARGEVVVVDED---FGLRISEIVT 237 >gi|91200231|emb|CAJ73275.1| strong similar to flagellar motor switch protein FliN [Candidatus Kuenenia stuttgartiensis] Length = 120 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 4/95 (4%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P DS E N DLI+++ V + + LG M I +++ LS+G ++ L+K G V Sbjct: 23 PEEMDSQKGGEG-MPNLDLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPV 81 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ + + +A+GE+ ++EE FG+++ I Q Sbjct: 82 ELLVRGKLLARGEVVVVEE---RFGLKITAICGPQ 113 >gi|32490801|ref|NP_871055.1| hypothetical protein WGLp052 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166007|dbj|BAC24198.1| fliN [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 135 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 76/122 (62%), Gaps = 5/122 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 +++ +V N+ E+ K + + I E SS N +K +++ +LI++IP+KM I LG Sbjct: 11 IKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKN--KKLSEDINLILDIPIKMTIELGR 68 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M I +L+ L + ++TLD +GE +DI IN+ +A+GE+ +M+E +G+++++I+ Sbjct: 69 TKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKE---RYGIKILDIIT 125 Query: 146 AQ 147 + Sbjct: 126 PE 127 >gi|255022052|ref|ZP_05294058.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] gi|254968538|gb|EET26094.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC 51756] Length = 120 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 2/93 (2%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + +L + + DL++N+P+++ + LG M N++ LS+G VI L++ VGE + I Sbjct: 21 DETNEKLLTPGSPSVDLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPLTI 80 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 IN + A GE ++ ++ FGVR+ ++N + Sbjct: 81 YINGEIFAYGEAVLVNQE--RFGVRLTALVNKE 111 >gi|254461964|ref|ZP_05075380.1| flagellar motor switch protein FliN [Rhodobacterales bacterium HTCC2083] gi|206678553|gb|EDZ43040.1| flagellar motor switch protein FliN [Rhodobacteraceae bacterium HTCC2083] Length = 99 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + D + NI V+M I +G + I+NL+ L++G V+ LD+ GE +DI +N Sbjct: 7 ATPAQGSEKDKLRALENIEVQMSIEVGRTEITIANLLRLNEGSVVELDRLAGEPLDILVN 66 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 IAKGE+ ++ E FG+R +I++ + Sbjct: 67 GTMIAKGEVVMVGE---RFGIRFSDIVDPE 93 >gi|254702551|ref|ZP_05164379.1| Flagellar motor switch FliN protein [Brucella suis bv. 3 str. 686] gi|261753129|ref|ZP_05996838.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686] gi|261742882|gb|EEY30808.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686] Length = 107 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 64/97 (65%), Gaps = 2/97 (2%) Query: 44 KNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + +++ E + + +KS N DLIM IPV +Q++LG M +S+L+ L +G V Sbjct: 11 QQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAV 70 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 ITLDK++G+ VDI +N + IA+GE+ ++E+D + FGV Sbjct: 71 ITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSSRFGV 107 >gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM 5305] gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM 5305] Length = 227 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 N++ + +++ ++ + ++I LG + I +V+L G V+ LDK G+ VDI +N Sbjct: 141 NSLGAQERAELEMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNG 200 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + IA+GE+ ++ + +F VRV EIL + Sbjct: 201 RLIARGEVLVLND---NFCVRVAEILTPK 226 >gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC BAA-613] gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC BAA-613] Length = 320 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 18/136 (13%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNIS-----------EPISSDSNNILEKSTDNFDL 71 D P Q+T +P + + + I+ PI I E+ Sbjct: 191 DMPCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKK---- 246 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +++I + + + LGS + ++++L +G ++ LDK+ G D+ +N + I +G++ + + Sbjct: 247 LLDITLDVSVRLGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGD 306 Query: 132 DDTHFGVRVIEILNAQ 147 FG R+IE++ + Sbjct: 307 ---RFGARIIEVVGKR 319 >gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila] Length = 125 Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 4/100 (4%) Query: 48 DNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D+IS P ++D S + IPVK+ + + S + + L+ + +G VI LDK Sbjct: 21 DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE +D+ +N + +AKGE+ ++ +G+R++++++ Sbjct: 81 LAGEPLDVRVNGRLLAKGEVVVVN---GKYGLRLVDVIDT 117 >gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1] gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1] Length = 137 Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 66/104 (63%), Gaps = 6/104 (5%) Query: 44 KNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 ++++D+ P ++ L K N +L+M++P+++ + LGS QI +L+ L+KG ++ Sbjct: 33 RDEMDHAENPFDVSTDGDLPK---NLELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVE 89 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L+K + ++I +N++ +A GE+ ++++ G+R+ +I++ + Sbjct: 90 LEKEADDPLEIYVNDRLLAYGEVVMIKD---KLGIRITDIVSLK 130 >gi|329888111|ref|ZP_08266709.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] gi|328846667|gb|EGF96229.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] Length = 110 Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 3/90 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 ++ EKS + + ++PV + +LG M ++ L+ L+KG V+ LD++VGE++DI +N Sbjct: 20 ADEGGEKSAVDLAPVFDVPVNISAVLGKANMSVAQLLKLNKGSVLELDRKVGEAIDIFVN 79 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 N+ +A+GE+ ++E+ GV + EI+ + Sbjct: 80 NRLVARGEVVVVED---RLGVTMTEIIKTE 106 >gi|227873537|ref|ZP_03991782.1| possible flagellar motor switch protein FliY [Oribacterium sinus F0268] gi|227840627|gb|EEJ51012.1| possible flagellar motor switch protein FliY [Oribacterium sinus F0268] Length = 472 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 + ++ DN +++M +P+++ + +G + ++++ ++G ++ LDK GE D+ Sbjct: 378 ENEGGGAGENPDNREMLMKVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQADLY 437 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + IAKG+I ++EE +FG+R+ EIL Sbjct: 438 VNGECIAKGDIVVVEE---NFGIRITEILKK 465 >gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ZM4] gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ZM4] gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 103 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 59/97 (60%), Gaps = 3/97 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 E + S + T + L+ +IPVKM + +GS + ++ L++L++G V+ LD++ E Sbjct: 3 DESTAKGSKSAKSNRTKDLGLLSDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANE 62 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +D+ +N + IAKGE+ + FGVR++++++ + Sbjct: 63 LLDVVVNGKLIAKGEVVTVN---GRFGVRIVDVVSNE 96 >gi|116328051|ref|YP_797771.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331496|ref|YP_801214.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120795|gb|ABJ78838.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125185|gb|ABJ76456.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 174 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 +++ S P S+ + +ST N +L+M++ + + + LG M I ++ L+ Sbjct: 66 ADISAALGPSPTPSAPRSATRQSASTQST-NLNLLMDVNLALTVELGRTNMFIKDVNGLN 124 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +G V+ LDK VGE +DI N + +G++ M++ +G+++ EI++ Sbjct: 125 EGIVVELDKNVGEDLDILANGHLVGRGKLVAMDDF---YGIQITEIVD 169 >gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM 12809] gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM 12809] Length = 299 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 6/114 (5%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 P S ++D + + S N DL+++I V + + +GS M + Sbjct: 182 EEPDFGSAFTFPEDDDEPAT---GGFGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLK 238 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +++ + G++I LD+ E V++ INN+ IA+GE+ I++ +FG R+ EI++ Sbjct: 239 DILTMGSGNIIELDESADEPVELVINNKVIARGEVVIVD---GYFGFRIKEIVS 289 >gi|163758005|ref|ZP_02165093.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43] gi|162284294|gb|EDQ34577.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43] Length = 241 Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 40/79 (50%), Positives = 59/79 (74%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 DL+M IPV +QIILGS M +S+L+ LS+G I LD+++GE V+I +N + I +GEIT Sbjct: 157 RVDLVMGIPVDVQIILGSSRMAVSSLMELSEGATIALDRKIGEPVEIMVNGKMIGRGEIT 216 Query: 128 IMEEDDTHFGVRVIEILNA 146 +++ DDT F VR+IE++ A Sbjct: 217 VLDSDDTKFAVRIIEVIGA 235 >gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17] gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17] Length = 96 Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + NF L+ ++ VK+ + +GS + + L+ LS+ VI LD++ E +D+ +N Sbjct: 9 PVDTSVAANFRLLQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGT 68 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146 I +GE+ + + FGVR+ E++N Sbjct: 69 LIGRGEVVTVGD---RFGVRMTELVNP 92 >gi|300024613|ref|YP_003757224.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526434|gb|ADJ24903.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] Length = 140 Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 7/130 (5%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK--STDNFDLIM 73 E D P ++ + E D+ P S++ I E DN +I Sbjct: 9 EPAVQDFDQPFAGM-AATGFGDGESSSGFPDI----MPADSEAGGIEEPQIEADNSAMIA 63 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV M+++LGS M ++ L L+KG V+ LDK VG+ VDI +N IA+GE+ I+ E Sbjct: 64 GLPVMMKVVLGSAKMPVATLAKLAKGSVVKLDKMVGDPVDILVNGHLIARGEVVILNEAS 123 Query: 134 THFGVRVIEI 143 + FGV + ++ Sbjct: 124 SRFGVVLTQV 133 >gi|260466629|ref|ZP_05812817.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum WSM2075] gi|259029635|gb|EEW30923.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum WSM2075] Length = 128 Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 41/95 (43%), Positives = 62/95 (65%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + E + N +IMNIPV +QIILGS M +S+L+ L KG + L++R+G Sbjct: 28 LHEEEQRPDAAFRAAAGANSSVIMNIPVDVQIILGSTEMAVSDLMALQKGSTVALNRRIG 87 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 E VD+ +N +KIA+GEIT++E D + FG+R+ EI+ Sbjct: 88 EPVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122 >gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71] gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71] Length = 117 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + DL+M++ V + + +G + I +L+ L++G +++LD+ V E +D+ +N IA+GE+ Sbjct: 34 DLDLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 93 Query: 128 IMEEDDTHFGVRVIEILNA 146 E FG+R+I++++ Sbjct: 94 ---ESAGQFGLRLIDVVSP 109 >gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum SL003B-26A1] gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum SL003B-26A1] Length = 112 Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 66/112 (58%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 +N E I +++++ + +S + + + ++PV++ +LG M +S+L+ Sbjct: 2 SNEIENSIPLDELESPGRRSDDGEEGVHVQSAADLEAVFDVPVRISAVLGHSRMHVSDLL 61 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 L+ G V+ LD++VGE++DI +N++ +A+GE+ ++E+ GV + EI+ Sbjct: 62 KLAAGTVLELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIKT 110 >gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035] gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035] Length = 102 Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + L+ N+ V M + +G+ + + +L+ L++G V+ LD+ G+ +DI +N IAKGE+ Sbjct: 20 DLGLLANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVV 79 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 ++ E FG+R +I++ + Sbjct: 80 VVGE---KFGIRFGDIVDPR 96 >gi|118593639|ref|ZP_01551015.1| flagellar motor switch protein [Stappia aggregata IAM 12614] gi|118433750|gb|EAV40411.1| flagellar motor switch protein [Stappia aggregata IAM 12614] Length = 111 Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 59/90 (65%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS + +S + + + ++PV++ +LG M +S+L+ L+ G V+ LD++VGE++DI + Sbjct: 23 DSETHVPQSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLASGTVLELDRKVGEAIDIYV 82 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N++ +A+GE+ ++E+ GV + EI+ Sbjct: 83 NDRLVARGEVVLVED---KLGVTMTEIIKT 109 >gi|13472566|ref|NP_104133.1| flagellar motor switch protein FliN [Mesorhizobium loti MAFF303099] gi|14023312|dbj|BAB49919.1| flagellar motor switch protein; FliN [Mesorhizobium loti MAFF303099] Length = 128 Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 40/95 (42%), Positives = 63/95 (66%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + E + N ++IMNIPV +QIILGS M +++L+ L KG + L++R+G Sbjct: 28 LHEEEQRPDAAFRAAAGANSNVIMNIPVDVQIILGSTEMAVADLMALQKGSTVALNRRIG 87 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 E VD+ +N +KIA+GEIT++E D + FG+R+ EI+ Sbjct: 88 EPVDVVVNGRKIARGEITVLESDPSRFGIRLTEII 122 >gi|254417867|ref|ZP_05031591.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3] gi|196184044|gb|EDX79020.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3] Length = 110 Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 ++ +K+ + + +PV + +LG M ++ L+ L+KG V+ LD++VGE++DI +NN Sbjct: 21 DDHGDKTAADLATVFEVPVNISAVLGKSHMSVAQLLKLNKGSVLELDRKVGEAIDIFVNN 80 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + IA+GE+ ++++ GV + EI+ + Sbjct: 81 RLIARGEVVVVDD---RLGVTMTEIIKTE 106 >gi|95929862|ref|ZP_01312603.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684] gi|95134158|gb|EAT15816.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684] Length = 107 Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 52/84 (61%), Gaps = 3/84 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 ++ N +L+++IP+ + + +G + + L+ + +G VI L K E +D+ +N++ IA Sbjct: 19 DEDLKNLELLLDIPLDVSVEVGRTKILVRELLQMDEGYVIELGKNANEPLDVYVNSRLIA 78 Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146 +GE+ ++++ G+R+ ++++ Sbjct: 79 RGEVVLVDD---KLGLRLTDVISP 99 >gi|313672896|ref|YP_004051007.1| flagellar motor switch protein flin [Calditerrivibrio nitroreducens DSM 19672] gi|312939652|gb|ADR18844.1| flagellar motor switch protein FliN [Calditerrivibrio nitroreducens DSM 19672] Length = 289 Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 66/110 (60%), Gaps = 6/110 (5%) Query: 41 LIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + +D D E + + +K+T N DL++++ V + I +GS M + ++V+LS Sbjct: 174 SAEDDDFDFSPEVTAVNPMPKQQKTTYGGKNIDLLLDVEVPVSIRIGSTKMFLKDIVSLS 233 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 G+++ LD+ E V + +NN+ IAKGE+ I++ +FGVR+ EI++ + Sbjct: 234 PGNIVELDEYAEEPVVVMVNNKPIAKGEVVIVD---GYFGVRIKEIISKE 280 >gi|209964122|ref|YP_002297037.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|7025357|gb|AAF35847.1|AF220003_1 polar flagellar motor switch protein FpiN [Rhodospirillum centenum] gi|209957588|gb|ACI98224.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 108 Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 57/80 (71%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + + + +IPV++ +LG C MQ+S+L+ L +G V+ LD++VGE++DI +NN+ +A+GE+ Sbjct: 29 KDLESVYDIPVQISAVLGKCTMQVSSLMKLGRGAVVELDRKVGEAIDIYVNNRLVARGEV 88 Query: 127 TIMEEDDTHFGVRVIEILNA 146 ++E+ GV + EI+ + Sbjct: 89 VVVED---RLGVTMTEIIKS 105 >gi|323139659|ref|ZP_08074701.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242] gi|322395091|gb|EFX97650.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242] Length = 124 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D S + L + + + + P+ +D + + D I+ IPV +Q+++GS Sbjct: 5 DMGTESFESEGARLPDEAMLGSGAPPVDTDKSQL-----RRIDSILRIPVVVQVVVGSAT 59 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + +S+L+ L +G VI LD RVG+ VDI +N + IA+GE+ ++EED FGV + EI Q Sbjct: 60 LPVSSLLKLGRGAVIPLDHRVGDPVDIVVNGRTIARGEVVVVEEDGARFGVSLTEICEPQ 119 >gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] Length = 212 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 3/115 (2%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 N + S + D + + DL+ ++ + ++I LG M Sbjct: 95 NQAQAALASLDSPAEMASDAQLFQLRDFGGAPASTNKTTIDLVRDVELDVKIELGRTNMY 154 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + +++ ++KG V++LDK G+ VDI +N + IA+GE+ ++ + +F VR+ E++ Sbjct: 155 LEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVLND---NFCVRIAELI 206 >gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1] gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1] Length = 107 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 DN L+ +IP+++ + +GS ++++ L++L+ G V+ LD++ E +DI +N +AK Sbjct: 17 AGRDNLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAK 76 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ + FG+RV++I+ A Sbjct: 77 GEVVTVN---GKFGIRVVDIVAA 96 >gi|197104325|ref|YP_002129702.1| flagellar motor switch protein FliN [Phenylobacterium zucineum HLK1] gi|196477745|gb|ACG77273.1| flagellar motor switch protein FliN [Phenylobacterium zucineum HLK1] Length = 111 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 57/90 (63%), Gaps = 3/90 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 + + +K+ + + ++PV + +LG + ++ L+ L++G V+ LD++VGE++DI Sbjct: 19 PEPSPDEDKTAGDLAPVFDVPVSISAVLGRSTLSVAQLLQLAQGSVLELDRKVGEAIDIY 78 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +NN+ +A+GE+ I++E GV + EI+ Sbjct: 79 VNNRLVARGEVVIVDE---RLGVTMTEIIK 105 >gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans DSM 10331] gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans DSM 10331] Length = 95 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 3/87 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + ++ N ++ N+ +++ + LG M + L+ L+ GDVI LD+ VD+ +N Sbjct: 2 PEVPETAANLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGT 61 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146 +AKGE+ +++++ FGVR++EI+++ Sbjct: 62 LVAKGEVVVVDDE---FGVRILEIISS 85 >gi|329849953|ref|ZP_08264799.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum C19] gi|328841864|gb|EGF91434.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum C19] Length = 108 Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++PV + +LG M +S L+ L G V+ LD++VGE++DI +NN+ +A+GE+ ++++ Sbjct: 32 VFDVPVNISAVLGKSYMSVSQLLKLGAGSVLELDRKVGEAIDIYVNNRLVARGEVVVVDD 91 Query: 132 DDTHFGVRVIEILNAQ 147 GV + EI+ ++ Sbjct: 92 ---RLGVTMTEIIKSE 104 >gi|254294568|ref|YP_003060591.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814] gi|254043099|gb|ACT59894.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814] Length = 115 Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 64/103 (62%), Gaps = 4/103 (3%) Query: 44 KNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 + +++PIS++ K + + ++PV +Q ++G M++S L++L +G V+ Sbjct: 12 EATGKVLAKPISAEEEAERREKFAADLAPMFDVPVSVQAVIGRTTMEVSELMHLGEGSVL 71 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 LD+RVGE++DI +N++ +A+GEI ++++ GV + EI+ Sbjct: 72 ELDRRVGEAIDIYVNSRLVARGEIVVVDD---RLGVTMTEIIK 111 >gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1] gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1] Length = 190 Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + DL+M+IP+++ + +GS + + ++ L+ +++ LDK + + VD+ +N + IAKG Sbjct: 100 EQEKLDLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKG 159 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ +E+ HFG+++ I+ Q Sbjct: 160 ELYTVED---HFGIKITSIITVQ 179 >gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium capsulatum ATCC 51196] gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium capsulatum ATCC 51196] Length = 248 Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 38 SEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 SE + + P SS S S N DL+++I V + GS + I L+ Sbjct: 130 SEKAAKAPETAARPAPASSGQPSAAASPASAANVDLLLDIEVDASLRFGSRELAIRELLE 189 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 GDV+ LD+ + + VD+ + ++ +A+GE+ ++ +FG+RV E+ + Sbjct: 190 TGPGDVLELDRHITDPVDLVVGDKIVARGEVVLVN---GNFGLRVTEVAEPK 238 >gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21] gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21] Length = 96 Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 D F LI +I V++ + LG M++ +++ L + VI LD+ E +D+ +N + IA+GE Sbjct: 5 ADGFGLIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGE 64 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + F +RV+EI+ A Sbjct: 65 VIA---QGNRFAIRVLEIVGA 82 >gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum marinum IMCC1322] gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum marinum IMCC1322] Length = 112 Score = 97.6 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +N V+ P + + S +N ++ NI V + + +GS ++I +L+ L++G VI Sbjct: 5 AENVVEEAKIPGAESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVI 64 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 LD+ G+ +DI N IAKGE+ ++ E FG+R EI+ + Sbjct: 65 ELDRLAGDPLDILANGTMIAKGEVVMVGE---RFGIRFSEIVAPE 106 >gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp. YO3AOP1] gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp. YO3AOP1] Length = 194 Score = 97.6 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 68/147 (46%), Gaps = 3/147 (2%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60 ++ + S++ EG + + + + + + + + S Sbjct: 39 LLAQWSEMLNESGKKEGSQEDLAAQWSEMLHEEKSESVDANTHQTPLKESEKKESFTKEE 98 Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + + D++++IP+ + + +GS M I ++ L+ VI LDK + E +D+ +N Sbjct: 99 FSPEILNKLDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVL 158 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 +AKGE+ +++ +F +++ EIL + Sbjct: 159 VAKGELYQVDD---NFAIKITEILTKE 182 >gi|291532052|emb|CBK97637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium siraeum 70/3] Length = 400 Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 10 YIKDNLEGR--SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67 Y + P+Q P N Q ++ P+ S+ + Sbjct: 288 YPNPAMNPAMNPAMYGQPVQPVMQPQPAVNYRNA-QLAQFESFEAPLGSE-------QKE 339 Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N L+M++P+++ + +GS +I +++ S+G +I L+++ G VD+ +N IA+G++ Sbjct: 340 NLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDV 398 >gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 178 Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + N +L+M++ + + + LG M I ++ L++G V+ LDK VGE +DI N Sbjct: 90 RQSSPSQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANG 149 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145 + + +G++ M++ +G+++ EI++ Sbjct: 150 RLVGRGKLVAMDDF---YGIQITEIVD 173 >gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae 12198] gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae 12198] Length = 279 Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 60/113 (53%), Gaps = 3/113 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 N ++ E S+ N+ ++ N +++++ + +++ +G M + ++ Sbjct: 162 EENFSGKKEEASSPQTEEIDSAPGQNLSQEEMKNIGMLLDVKLNVKVRIGQKRMLLKDVT 221 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ G VI L++ E ++I I+++ IAKGE+ I++ +FG++V EI + Sbjct: 222 SMDIGSVIELNQLANEPLEILIDDKVIAKGEVVIVD---GNFGIQVTEIGTKR 271 >gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium HTCC2207] gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium HTCC2207] Length = 108 Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D++ NIPV + + +G ++I +L+ L++G V+ LD+ GE +D+ +NN +A+GE+ Sbjct: 26 NADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVVELDRIAGEPLDLLVNNTLVAQGEVV 85 Query: 128 IMEEDDTHFGVRVIEIL 144 ++ E +GVR+ ++ Sbjct: 86 LVNE---RYGVRLTSVI 99 >gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] Length = 178 Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + N +L+M++ + + + LG M I ++ L++G V+ LDK VGE +DI N Sbjct: 90 RQSSPSQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANG 149 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145 + + +G++ M++ +G+++ EI++ Sbjct: 150 RLVGRGKLVAMDDF---YGIQITEIVD 173 >gi|154252628|ref|YP_001413452.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans DS-1] gi|154156578|gb|ABS63795.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans DS-1] Length = 117 Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 67/113 (59%), Gaps = 5/113 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEK--STDNFDLIMNIPVKMQIILGSCCMQISN 92 + L ++D++ + S + E+ + + + + ++PV + +LG +++SN Sbjct: 4 QDEEVALPDLANIDSLPPAEAGPSEHEEEQVRTAQDLEAVFDVPVNVSAVLGKTHIEVSN 63 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 L+ L +G ++ LD++VGE++DI +N++ +A+GE+ ++++ GV + EI+ Sbjct: 64 LLKLGRGAIVELDRKVGEAIDIYVNDRLVARGEVVVVDD---RLGVTMTEIVK 113 >gi|57241941|ref|ZP_00369881.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195] gi|57017133|gb|EAL53914.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195] Length = 279 Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73 ++G I + D + T + + Q+ + S ++ +L + N +LIM Sbjct: 146 KIDGLEEQISLAMDDKLYKTLTKSGDAKAQQKEGAISS----GEAMMMLGEGLKNINLIM 201 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++ + +++ +G+ M + +++ + G V+ L++ + ++I I +++IA GE+ I++ Sbjct: 202 DVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVD--- 258 Query: 134 THFGVRVIEILNAQ 147 +FGV++ EI + Sbjct: 259 GNFGVQITEIGTKK 272 >gi|83859386|ref|ZP_00952907.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83852833|gb|EAP90686.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 125 Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 70/123 (56%), Gaps = 6/123 (4%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD---NFDLIMNIPVKMQII 82 + D +++ P + D + + EP + + ++++ + + ++PV + + Sbjct: 1 MSDDDLNLPDLSDGPQGVNPDPEPMGEPANGAAQALIDEEVRTAVDLAPVFDVPVNISAV 60 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG + +++L+ L+ G V+ LD++VGE++DI +N++ +A+GE+ ++++ GV + E Sbjct: 61 LGKAHVDVNSLLRLTSGSVLELDRKVGEAIDIYVNSRLVARGEVVVVDD---RLGVTMTE 117 Query: 143 ILN 145 I+ Sbjct: 118 IIK 120 >gi|254502033|ref|ZP_05114184.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] gi|222438104|gb|EEE44783.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11] Length = 111 Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 13/120 (10%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 + + + P + E + + + I P +S + + + ++PV++ +LG Sbjct: 3 DEQDTNIPLDELEAPDRAGEQEEIPHP----------QSAADLEAVFDVPVRISAVLGHS 52 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 M +S+L+ L+ G V+ LD++VGE++DI +N++ +A+GE+ ++E+ GV + EI+ Sbjct: 53 KMHVSDLLKLASGTVLELDRKVGEAIDIYVNDRLVARGEVVLVED---KLGVTMTEIIKT 109 >gi|254470176|ref|ZP_05083580.1| flagellar motor switch protein [Pseudovibrio sp. JE062] gi|211960487|gb|EEA95683.1| flagellar motor switch protein [Pseudovibrio sp. JE062] Length = 111 Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 59/83 (71%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 K+ ++ + + ++PV++ +LG M++S+L++L G V+ LD++VGE++D+ +NN+ IA+ Sbjct: 30 KAAEDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIAR 89 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 GE+ ++E+ GV + EI+ A Sbjct: 90 GEVVLVED---KLGVTMTEIIKA 109 >gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida subsp. salmonicida A449] gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida subsp. salmonicida A449] Length = 125 Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 4/100 (4%) Query: 48 DNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D+IS P ++D S + IPVK+ + + S + + L+ + +G VI LDK Sbjct: 21 DDISMPSAADYMAPTSSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDK 80 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 GE++D+ +N + +AKGE+ ++ +G+R++++++ Sbjct: 81 LAGETLDVRVNGRLLAKGEVVVVN---GKYGLRLVDVIDT 117 >gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT 98-5489] gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT 98-5489] Length = 119 Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 M + + I P D LE +N+ ++++ V LGS + + ++ KG Sbjct: 1 MPADEFTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKG 60 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +I L K GESV+I IN + + KGE+ + E+ + +RV E+L++ Sbjct: 61 SIIDLQKPAGESVEIYINGRIVGKGEVMVYEK---NLAIRVNEVLDS 104 >gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740] gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes] Length = 117 Score = 96.9 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + N+ P + +N LE+ N+ ++++ V LG+ + ++ ++ KG +I L Sbjct: 8 ETPNLINPRQQELSNYLEEVIRNYSGLLDMEVIFTAELGATKITLAEILKFEKGSIIDLQ 67 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K GESV+ +N + I KGE+ + E+ + +R+ EIL++ Sbjct: 68 KPAGESVETFVNGRIIGKGEVMVYEK---NLAIRINEILDS 105 >gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC3088] gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC3088] Length = 102 Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 56/89 (62%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + +S+ N +++ NIPV + + +G ++I +L+ L +G V+ L++ GE +D+ +NN Sbjct: 11 EPVDRESSFNTEVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNN 70 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +A+GE+ ++ E +GVR+ ++ ++ Sbjct: 71 TVVAQGEVVLVNE---RYGVRLTNVIPSE 96 >gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2] gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2] Length = 101 Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 55/93 (59%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S + E DL++++ V++ + LGSC + + ++ LS G ++ L +R + V + Sbjct: 10 SGSETKVSENDRKALDLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLAQRATDPVGL 69 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +N++ +A GE+ ++EE +FG+++ EI+ Q Sbjct: 70 FVNDKLVAYGEVVVVEE---NFGIKITEIVGGQ 99 >gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium yellowstonense SS-5] gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium yellowstonense SS-5] Length = 173 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 58/112 (51%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + + I + + + S + + D++++IP+ + + +GS M I ++ Sbjct: 53 ESVDADIHQTLLKKSEKKESFTKEEFSPEILNKLDILLDIPITITVEIGSKSMPIEEILK 112 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L+ VI LD+ + E +D+ +N +AKGE+ +++ +F +++ EIL + Sbjct: 113 LAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQVDD---NFAIKITEILTKE 161 >gi|254440105|ref|ZP_05053599.1| flagellar motor switch protein FliN [Octadecabacter antarcticus 307] gi|198255551|gb|EDY79865.1| flagellar motor switch protein FliN [Octadecabacter antarcticus 307] Length = 98 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T+ + NI V+M I +G + IS L+ L++G V+ L++ GE +DI +N KIAKGE Sbjct: 14 TEKLRALENIEVEMSIEVGRTDISISELLRLNEGSVVELNRLAGEPLDILVNGTKIAKGE 73 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + ++ E FG+R EI++ + Sbjct: 74 VVMVGE---RFGIRFSEIVDPE 92 >gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58] gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58] Length = 111 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 60/102 (58%), Gaps = 5/102 (4%) Query: 48 DNISEPISSDSNNILEKSTDN--FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 D P + + K T+N F L+ +IPV+M + +GS ++++ +++L++G ++ LD Sbjct: 3 DMSEAPRMERPEDPVSKMTNNRQFKLLADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELD 62 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ + +DI +N IAKGE+ + +G+R+++I + Sbjct: 63 RQADDLLDIMVNGALIAKGEVVTVN---GRYGIRIVDIAATE 101 >gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797] gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797] Length = 226 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + + N+ + + I LG + I ++ + +G V+ LDK G+ VDI +N + IA Sbjct: 144 PEEAMKLSSLQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIA 203 Query: 123 KGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ ++ + +F VRV EI++ + Sbjct: 204 RGEVLVLND---NFCVRVAEIISPE 225 >gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] Length = 115 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 3/106 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + ++Q D E S +S + K + +PV++ + L S M + L + Sbjct: 3 EQNILQDEDFLLDDEFFSENSASAQPKPKKDMSFFHQLPVQVTLELASAEMSLGELTQMG 62 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +GDV+ LD+ VGE +DI +N + +GE+ + +GVR++E+ Sbjct: 63 EGDVVALDRMVGEPLDIRVNGALLGRGEVVEVN---GRYGVRLLEV 105 >gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2] gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2] Length = 133 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 67/126 (53%), Gaps = 8/126 (6%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQI 81 ++TN S NSE + + + +++ + +S + D + +++++P+ + + Sbjct: 3 EETNPSPEEQNSEEQPELSPDELMAQQFAQESYGSETEEEDRIEKSKFSILLDVPLDVIV 62 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +GS M + ++ L+ V+ L++ + E VD+ +N + IAKGE+ + +FG+++ Sbjct: 63 EIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTV---KNNFGLKIT 119 Query: 142 EILNAQ 147 ++ + Sbjct: 120 HVVTPE 125 >gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC BAA-430] gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC BAA-430] Length = 119 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 M + + I P D LE +N+ ++++ V + LGS + +S ++ KG Sbjct: 1 MPADEFTLAKIQAPKQEDLARYLEGIINNYGGLLDMEVVFRSELGSTKIPLSEILQFEKG 60 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +I L K GESV+I IN + I KGE+ + E+ + +RV EIL++ Sbjct: 61 SIIDLQKPAGESVEIFINGRIIGKGEVMVYEK---NLAIRVNEILDS 104 >gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073] gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073] Length = 124 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 T +F I ++P++++ LG M + +++L G VI LDK GE VD+ +N+ Sbjct: 34 PAPAPGVTADFKRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVND 93 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +AKGE+ ++ + FGVR+ + + Sbjct: 94 IPLAKGEVVVINDA---FGVRINSLAAVE 119 >gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] Length = 278 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 V + + ++ + N ++I+++ + +++ +G M + +++ + G VI Sbjct: 169 AATPVAHAESGSTPVAHALSPTEFKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVI 228 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L++ + +DI ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 229 ELNQLANDPLDILVDDKVIAKGEVVIVD---GNFGIQITDIGTKR 270 >gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella aurantiaca DW4/3-1] gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella aurantiaca DW4/3-1] Length = 441 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%) Query: 19 SMHIDNP-LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPV 77 S+ I P Q SP + D + SE S D+ N E S DL+ +IP+ Sbjct: 321 SIVIGEPAFQRAVPPSPEGEEAFTQPETDGSSESEGQSLDTMNKSEGS----DLLADIPL 376 Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 ++ + L + +V+L G V+ L + GE V++++N + +A+GE+ +E G Sbjct: 377 QIAVELARVPVTADEVVSLRVGHVLELHRSPGEPVELSVNGKVVARGELVEVE---GQLG 433 Query: 138 VRVIEILN 145 VRV+ + Sbjct: 434 VRVLSLAG 441 >gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT 98-5491] gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT 98-5491] Length = 119 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 M + + I P D LE +N+ ++++ V LGS + + ++ KG Sbjct: 1 MPADEFTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKG 60 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +I L K GESV+I IN + + KGE+ + E+ + +RV EIL++ Sbjct: 61 SIIDLQKPAGESVEIYINGRIVGKGEVMVYEK---NLAIRVNEILDS 104 >gi|150388449|ref|YP_001318498.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens QYMF] gi|149948311|gb|ABR46839.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens QYMF] Length = 143 Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 3/108 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + + +++ V + + +N I ++P+ + + LG +IS ++ Sbjct: 29 DEVQPSTKQSKVSVQPIQFQAFEQVSSKGVPENISTIQDVPLSVTVELGRTVKKISEVLE 88 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G +I ++K VGE VDI +N Q +AKGE+ +++E ++G R+ EI Sbjct: 89 FGPGTIIEVEKLVGEHVDILVNGQYVAKGEVVVIDE---NYGTRITEI 133 >gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC 49179] gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC 49179] Length = 292 Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQI 90 T+ ++ + + ++ + N +++++I + +++ +G M + Sbjct: 170 APQNTSKPRNAPSMPNLPVVPTERTESDGHLEQLEARNINMLLDIKLNVRVRIGQKKMIL 229 Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++V++ G VI L++ V + ++I ++++ IAKGE+ I++ +FG+++ +I + + Sbjct: 230 KDVVSMDIGSVIELNQMVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGSKR 283 >gi|114569234|ref|YP_755914.1| flagellar motor switch protein [Maricaulis maris MCS10] gi|114339696|gb|ABI64976.1| flagellar motor switch protein FliN [Maricaulis maris MCS10] Length = 118 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 EKS + + ++PV + +LG + +++L+ L+ G V+ LD+++GE++DI +NN+ +A Sbjct: 34 EKSAADLAPVFDVPVNISAVLGKAHIDVNSLLKLTSGSVVELDRKIGEAIDIYVNNRLVA 93 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 +GE+ ++++ GV + EI+ Sbjct: 94 RGEVVVVDD---RLGVTMTEIIK 113 >gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum L-1] gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum L-1] Length = 112 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 F L+ +IPV+M + +GS ++++ +++L++G V+ LD++ + +DI +N IAKGE+ Sbjct: 25 RQFRLLADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEV 84 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 + +G+R++EI A+ Sbjct: 85 VTVN---GRYGIRIVEIAAAE 102 >gi|226225726|ref|YP_002759832.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27] gi|226088917|dbj|BAH37362.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27] Length = 141 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 +++++ + + I LG M + ++ L +G VI LD+ GE +DI + +++ A+GE+ + Sbjct: 57 IGMLLDLTLPVSIELGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVV 116 Query: 129 MEEDDTHFGVRVIEIL 144 + E HFGVR+ +L Sbjct: 117 LGE---HFGVRITRVL 129 >gi|288962690|ref|YP_003452984.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] gi|288914956|dbj|BAI76440.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510] Length = 112 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 62/102 (60%), Gaps = 3/102 (2%) Query: 47 VDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +D+ S+ + I +K D + I N+PV +Q++LG M ++ L+ L +G V+ L+ Sbjct: 9 LDDDSKQAEKAPDRIGDKPYDGPMNAIYNVPVDVQVVLGRTSMLVAQLLKLGRGAVLELE 68 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++V E V++ +N++ +A+GE+ I+E+ GV + EI+ + Sbjct: 69 RKVDEPVEVLVNHRLVARGEVVIVEDQ--RLGVTLTEIVRTE 108 >gi|323186822|gb|EFZ72142.1| flagellar motor switch protein fliN domain protein [Escherichia coli RN587/1] Length = 102 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEP---ISSDSNNILEKSTDNFDLIMNIPVK 78 ++NP D N + +E L ++ S + + + DLIM+IPVK Sbjct: 4 MNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGTFQDIDLIMDIPVK 63 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + + LG M I L+ L++G V+ LD GE +DI IN Sbjct: 64 LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102 >gi|315638333|ref|ZP_07893513.1| flagellar motor switch protein [Campylobacter upsaliensis JV21] gi|315481600|gb|EFU72224.1| flagellar motor switch protein [Campylobacter upsaliensis JV21] Length = 281 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 75/147 (51%), Gaps = 9/147 (6%) Query: 1 MIKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNN 60 +K + I+D E S+ +D+ T S + + ++ V S ++ Sbjct: 137 FVKLYNYDIKIEDLEEQISLVMDDKFYKTLTKSGDDEATTQQKEGAVS------SGEAMM 190 Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I I +++ Sbjct: 191 TLGEGLKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKR 250 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 IA GE+ I++ +FGV++ EI + Sbjct: 251 IAYGEVVIVD---GNFGVQITEIGTKK 274 >gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9] gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9] Length = 261 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 53/86 (61%), Gaps = 3/86 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + ST N +L++++ + + + G + + +++L+ G V+ LD++V E V++ ++ Sbjct: 174 PEVTGTSTSNLNLVLDVELNVTLRFGQRQLSLREVLDLTSGSVVELDRQVDEPVELVLDG 233 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEIL 144 + +A+GE I++ ++G+R+ ++L Sbjct: 234 KVVARGEAVIID---GNYGMRITQVL 256 >gi|153949693|ref|YP_001399619.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|152961188|gb|ABS48649.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] Length = 137 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D + SPT + + +I ++ N E ++ + ++ L IPV + + + S Sbjct: 19 DESAISPTEHFDSMINSPEIINTPEKTATKT----DEQKRKMSLFSRIPVTLTLEVASVE 74 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I Sbjct: 75 LPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127 >gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Dethiobacter alkaliphilus AHT 1] gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Dethiobacter alkaliphilus AHT 1] Length = 541 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 SS + + E+ DLI +IPV++ +LG + + L+ G V+ L VDI Sbjct: 449 SSPESTLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDI 508 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 N + +A+GE+ E FG+++ EI+ Sbjct: 509 LANGKLVARGEVVHYNE---RFGIKITEIM 535 >gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM 1740] gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes] Length = 289 Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 N+ E N +++++ +++++ +G M + +++++ G V+ L++ + ++I ++++ Sbjct: 197 NLSEPEMKNIGMLLDVKLQVKVRIGQKKMLLKDVISMDIGSVVELNQLANDPLEILVDDK 256 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 IAKGE+ I++ +FG+++ EI + Sbjct: 257 VIAKGEVVIVD---GNFGIQITEIGTKR 281 >gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM 16994] gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM 16994] Length = 288 Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISS-DSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 N + + N + P SS + + E N LIM + + +++ +G M Sbjct: 165 NEALTGEKAAPAPASNSSNIFDAPSSSVPAVKLDEGEMKNIGLIMGVKLPVRVRIGKKKM 224 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + +++++ G VI L++ + +DI +++ IA+GE+ I++ +FGV++ I + Sbjct: 225 LLKDVLSMDIGSVIELNQLANDPLDILVDDHVIAQGEVVIVD---GNFGVQITSIGTKR 280 >gi|237751753|ref|ZP_04582233.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879] gi|229373119|gb|EEO23510.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879] Length = 283 Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 58/106 (54%), Gaps = 3/106 (2%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + K+ S + ++ +K N ++++I + +++ +G M + +++++ G V Sbjct: 173 VPKDLKAPASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSV 232 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + L++ + ++I +N++ I KGE+ +++ +F +++ EI + Sbjct: 233 VELNQLASDPLEILVNDKIIGKGEVVVVD---GNFAIQITEIGTKK 275 >gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum UT26S] gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum UT26S] Length = 112 Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 F L+ +IPV+M + +GS ++++ +++LS+G V+ LD++ + +DI +N IAKGE+ Sbjct: 25 RQFRLLADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEV 84 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 + +G+R++EI A+ Sbjct: 85 VTVN---GRYGIRIVEIAAAE 102 >gi|296283237|ref|ZP_06861235.1| flagellar motor switch protein [Citromicrobium bathyomarinum JL354] Length = 126 Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD--NFDLIMNIPVKMQIILGS 85 D + NSE + + + P + + E D + +PVKMQ +LG Sbjct: 7 DIAAAPIEQNSEAFVDLPSLGETAAPEPLEDLAVYEGDGGALGLDAVHEVPVKMQAVLGR 66 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 M +S L++++ G V+ LD++VGE VDI ++N+ IA+GE+ ++++ GV + EI++ Sbjct: 67 ARMTVSELMSIAPGRVVELDRKVGEPVDIFVSNRLIARGEVVLIDKA---LGVTLTEIVH 123 Query: 146 A 146 Sbjct: 124 E 124 >gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92] gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein [Campylobacter curvus 525.92] Length = 286 Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 +++ ++ + ++ + + N +LIM++ + +++ +GS M + ++++ Sbjct: 171 EPTKVGESESQSGDQAKATHGSRSEFSAEEMRNINLIMDVRLPIRVRIGSKRMLLKDVLS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G VI L++ + ++I I ++ IA GE+ I++ +FG+++ +I + + Sbjct: 231 MDIGSVIELNQLANDPLEILIGDKVIALGEVVIID---GNFGIQITQIGSKR 279 >gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium DG1235] gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium DG1235] Length = 82 Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + T + L+M++ VK+ + LGSC M + ++ L G VI L++ + V + IN++ IA Sbjct: 3 EETKDLGLLMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAY 62 Query: 124 GEITIMEEDDTHFGVRVIEILN 145 GE+ ++E+ +FG+++ E+ N Sbjct: 63 GEVVVVED---NFGIKITEMAN 81 >gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100] gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100] Length = 279 Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 7/110 (6%) Query: 42 IQKNDVDNISEPISSDSNNILE----KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + K D++ I P + + + N LIM++ + +++ +GS M + +++ + Sbjct: 166 LTKTDLEEIVAPSEDHTQDHKALANVEELRNIGLIMDVRLPIRVRIGSKKMLLKDVLTMD 225 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 G VI LD+ + ++I I ++KIA GE+ I++ +FGV++ EI + + Sbjct: 226 IGSVIELDQLANDPLEILIGDKKIAYGEVVIVD---GNFGVQITEIGSKK 272 >gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1] gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1] Length = 149 Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83 P + E + + ++ +E + + + + + I++IP+ + +++ Sbjct: 22 EPTPQNDEDLMKLWEEAIQAQAQTESSAE--NQQAQATTQDISKDLQRILDIPLSITVVI 79 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G+ + I L+NL G V+ LD+ + V + N + IAK E+ ++ E +FG+R+ EI Sbjct: 80 GTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGE---NFGIRIAEI 136 Query: 144 LNAQ 147 + + Sbjct: 137 IEKE 140 >gi|218663132|ref|ZP_03519062.1| putative flagellar motor switch protein [Rhizobium etli IE4771] Length = 77 Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 38/75 (50%), Positives = 62/75 (82%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 M+IP+ +QI+LG+ MQ+S L+NL++G I LDK++GE V+I +N ++IA+GEIT+++ D Sbjct: 1 MDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDND 60 Query: 133 DTHFGVRVIEILNAQ 147 DT FGV++IE+L+ + Sbjct: 61 DTRFGVKLIEVLSTK 75 >gi|22127343|ref|NP_670766.1| flagellar switch protein [Yersinia pestis KIM 10] gi|45442781|ref|NP_994320.1| flagellar switch protein [Yersinia pestis biovar Microtus str. 91001] gi|51597652|ref|YP_071843.1| flagellar switch protein [Yersinia pseudotuberculosis IP 32953] gi|108809074|ref|YP_652990.1| flagellar switch protein [Yersinia pestis Antiqua] gi|108810733|ref|YP_646500.1| flagellar switch protein [Yersinia pestis Nepal516] gi|145597802|ref|YP_001161878.1| flagellar switch protein [Yersinia pestis Pestoides F] gi|150260264|ref|ZP_01916992.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis CA88-4125] gi|165925127|ref|ZP_02220959.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165939068|ref|ZP_02227620.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|166008730|ref|ZP_02229628.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166212179|ref|ZP_02238214.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|167399118|ref|ZP_02304642.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419195|ref|ZP_02310948.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425214|ref|ZP_02316967.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466356|ref|ZP_02331060.1| flagellar switch protein [Yersinia pestis FV-1] gi|170022956|ref|YP_001719461.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186896786|ref|YP_001873898.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|218927897|ref|YP_002345772.1| flagellar switch protein [Yersinia pestis CO92] gi|229837393|ref|ZP_04457556.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A] gi|229840606|ref|ZP_04460765.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842843|ref|ZP_04462995.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. India 195] gi|229900930|ref|ZP_04516054.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516] gi|270487689|ref|ZP_06204763.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|294502774|ref|YP_003566836.1| flagellar switch protein [Yersinia pestis Z176003] gi|21960426|gb|AAM87017.1|AE013950_2 hypothetical [Yersinia pestis KIM 10] gi|45437647|gb|AAS63197.1| flagellar switch protein [Yersinia pestis biovar Microtus str. 91001] gi|51590934|emb|CAH22590.1| Flagellar switch protein [Yersinia pseudotuberculosis IP 32953] gi|108774381|gb|ABG16900.1| flagellar switch protein [Yersinia pestis Nepal516] gi|108780987|gb|ABG15045.1| flagellar switch protein [Yersinia pestis Antiqua] gi|115346508|emb|CAL19384.1| flagellar switch protein [Yersinia pestis CO92] gi|145209498|gb|ABP38905.1| flagellar switch protein [Yersinia pestis Pestoides F] gi|149289672|gb|EDM39749.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis CA88-4125] gi|165913024|gb|EDR31649.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|165923327|gb|EDR40478.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165992069|gb|EDR44370.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166206925|gb|EDR51405.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|166963189|gb|EDR59210.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051622|gb|EDR63030.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055977|gb|EDR65758.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749490|gb|ACA67008.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186699812|gb|ACC90441.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|229682269|gb|EEO78361.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516] gi|229690110|gb|EEO82167.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. India 195] gi|229696972|gb|EEO87019.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705516|gb|EEO91526.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A] gi|262360806|gb|ACY57527.1| flagellar switch protein [Yersinia pestis D106004] gi|262364751|gb|ACY61308.1| flagellar switch protein [Yersinia pestis D182038] gi|270336193|gb|EFA46970.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|294353233|gb|ADE63574.1| flagellar switch protein [Yersinia pestis Z176003] gi|320016726|gb|ADW00298.1| Flagellar motor switch protein fliN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 137 Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D + SPT + + +I ++ N E ++ + ++ L IPV + + + S Sbjct: 19 DESAISPTEHFDSVINSPEIINTPEKTATKT----DEQKRKMSLFSRIPVTLTLEVASVE 74 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I Sbjct: 75 IPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINE---KYGLRIINI 127 >gi|83955111|ref|ZP_00963767.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] gi|83840440|gb|EAP79613.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] Length = 114 Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 2/95 (2%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S P +++ + D I + + ++++LG M IS L+NL+KG VI LD+RVGE Sbjct: 16 STPQDAETKAPAGLDGKSLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGE 75 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 VDI IN++ +A+G++ ++ D GV + EI+ Sbjct: 76 PVDIMINDRMVARGDLVRVQGDS--LGVALREIVK 108 >gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4] gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4] Length = 123 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++ Sbjct: 4 TESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] Length = 118 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 D S + K + +PV++ + L S M + L + +GDV+ LD+ Sbjct: 16 DEFFTEEESHQSKSQAKPVKDMSFFHQLPVQVTLELASAEMSLGELTKMGEGDVVALDRM 75 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 VGE +DI +N + +GE+ + +GVR++E+ Sbjct: 76 VGEPLDIRVNGALLGRGEVVEVN---GRYGVRLLEV 108 >gi|86151260|ref|ZP_01069475.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841607|gb|EAQ58854.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 280 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + IL + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 184 AEEKAIILSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273 >gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum JL354] Length = 118 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 D + LI I V++ + LG + + ++ L + ++ LD+ E +DI +N + IA+GE+ Sbjct: 6 DGYGLIQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEV 65 Query: 127 TIMEEDDTHFGVRVIEILNA 146 F +R++E+ A Sbjct: 66 VA---QGNRFAIRILELSGA 82 >gi|157414373|ref|YP_001481629.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 81116] gi|157385337|gb|ABV51652.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|315931623|gb|EFV10588.1| Flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 327] Length = 280 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 184 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273 >gi|57168741|ref|ZP_00367872.1| fliY protein (fliY) [Campylobacter coli RM2228] gi|305432517|ref|ZP_07401679.1| flagellar motor switch protein [Campylobacter coli JV20] gi|57019788|gb|EAL56471.1| fliY protein (fliY) [Campylobacter coli RM2228] gi|304444556|gb|EFM37207.1| flagellar motor switch protein [Campylobacter coli JV20] Length = 278 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +D S S + + + N +LIM++ + +++ +G+ M + +++ + G V+ Sbjct: 170 AADDGHAHSSSNSENKGFEISEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVV 229 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L++ + ++I I +++IA GE+ I++ +FGV++ EI + + Sbjct: 230 ELNQLANDPLEILIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 271 >gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 172 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 49/73 (67%), Gaps = 3/73 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++ +++ I LG M I +++ LS+G V+ LDK +GE +DI N + + +G++ ++++ Sbjct: 93 DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDD-- 150 Query: 134 THFGVRVIEILNA 146 ++GV++ +I++ Sbjct: 151 -YYGVQITQIVDP 162 >gi|162419818|ref|YP_001604860.1| flagellar switch protein [Yersinia pestis Angola] gi|162352633|gb|ABX86581.1| flagellar motor switch protein FliN [Yersinia pestis Angola] Length = 137 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 28 DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 D + SPT + + +I ++ N E ++ + ++ L IPV + + + S Sbjct: 19 DESAISPTEHFDSVINSPEIINTPEKTATKT----DEQKRKMSLFSRIPVTLTLEVASVE 74 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +S L+ ++ VI LDK GE +DI +N + E+ ++ E +G+R+I I Sbjct: 75 IPLSELLTVNNDSVIELDKLAGEPLDIQVNGIMFGQAEVVVINE---KYGLRIINI 127 >gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] Length = 116 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+ S+++ I NIPV + + + S +++ +L+N++ G VI LDK GE +D+ Sbjct: 20 PSSDAPAPVSSNDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVR 79 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +N + E+ ++ +G+R++ +++ + Sbjct: 80 VNGTLLGHAEVVVVN---NKYGLRLVNVVDEK 108 >gi|86154056|ref|ZP_01072257.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842470|gb|EAQ59684.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni HB93-13] Length = 280 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273 >gi|86149628|ref|ZP_01067858.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|218561744|ref|YP_002343523.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839896|gb|EAQ57155.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|112359450|emb|CAL34233.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925355|gb|ADC27707.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni IA3902] gi|315927742|gb|EFV07069.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929163|gb|EFV08388.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 305] Length = 280 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273 >gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1] gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1] Length = 288 Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + + +N LIM++ + +++ +G M + +++N+ G VI L++ + +DI ++N Sbjct: 197 LSGEEMNNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHV 256 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNAQ 147 IA+GE+ I++ +FGV++ I + + Sbjct: 257 IAQGEVVIVD---GNFGVQITSIGSKR 280 >gi|148926865|ref|ZP_01810543.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|167004760|ref|ZP_02270518.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356442|ref|ZP_03223206.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|145844442|gb|EDK21550.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205345629|gb|EDZ32268.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|315057500|gb|ADT71829.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni S3] Length = 280 Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273 >gi|283955503|ref|ZP_06372998.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792964|gb|EFC31738.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] Length = 280 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 184 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273 >gi|315123664|ref|YP_004065668.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017386|gb|ADT65479.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 280 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 184 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273 >gi|88597660|ref|ZP_01100893.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88189964|gb|EAQ93940.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 84-25] Length = 280 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 184 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273 >gi|153951920|ref|YP_001397324.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. doylei 269.97] gi|152939366|gb|ABS44107.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei 269.97] Length = 273 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 177 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 236 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 237 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 266 >gi|163784306|ref|ZP_02179216.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880424|gb|EDP74018.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1] Length = 193 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 67/134 (50%), Gaps = 3/134 (2%) Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73 N E + + LQ+ + E + ++ + + ++ E + +L+M Sbjct: 52 NQEEIAKQWEEALQEQKSKEEGIDQEEIAKQWEEALQEQKTQGETPVFEEVKDEKLELLM 111 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IP+++ + +G + + +++ L+ V+ LDK + E VDI IN + +AKGE+ E Sbjct: 112 DIPLEISVEVGGRDILLEDILKLNPNTVLELDKYINEPVDIKINGKLVAKGELYTAE--- 168 Query: 134 THFGVRVIEILNAQ 147 +FGV++ I+ Q Sbjct: 169 NNFGVKITSIVTVQ 182 >gi|57237069|ref|YP_178081.1| flagellar motor switch protein FliY [Campylobacter jejuni RM1221] gi|121612924|ref|YP_999785.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 81-176] gi|57165873|gb|AAW34652.1| flagellar motor switch protein [Campylobacter jejuni RM1221] gi|121504209|gb|EAQ71980.2| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 273 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 177 TEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 236 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 237 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 266 >gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT 98-5491] gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491] gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491] Length = 285 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 66/129 (51%), Gaps = 9/129 (6%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78 S +N ++ + + + IQ + + + + + N +++++ ++ Sbjct: 159 SEEFENLFKENSQETNQETPQPSIQNTNHQDNA------ALELNNAEMKNMAMLLDVRLQ 212 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 +++ +G M + +++ + G V+ L++ + +++ ++++ IAKGE+ I++ +FG+ Sbjct: 213 VKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVVIVD---GNFGI 269 Query: 139 RVIEILNAQ 147 ++ EI + Sbjct: 270 QITEIAPKK 278 >gi|283955446|ref|ZP_06372944.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] gi|283793073|gb|EFC31844.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] Length = 280 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 184 AEEKAIMLGEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 243 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 244 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 273 >gi|258404715|ref|YP_003197457.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM 5692] gi|257796942|gb|ACV67879.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM 5692] Length = 109 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +P+++ LG+ + + +L+ L +G VI L+K GE +D+ +N++ IA+ E ++ E Sbjct: 33 VPLQVSAELGTTRILVKDLLQLREGSVIELEKLAGEPLDVFVNSRLIARAEAVVVNE--- 89 Query: 135 HFGVRVIEILNA 146 G+R+ ++++ Sbjct: 90 KIGLRLTDVVSP 101 >gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 FDLIM++ V++ + LG M++ +++ L++ V+ LD+ E +D+ +N + IA+GE Sbjct: 5 PRGFDLIMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGE 64 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + + FG+R++E++ Sbjct: 65 VVAQGD---RFGLRIVELVG 81 >gi|312115254|ref|YP_004012850.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium vannielii ATCC 17100] gi|311220383|gb|ADP71751.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium vannielii ATCC 17100] Length = 120 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 56/80 (70%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + + ++ IP+ ++++LGS M I + L +G VI LD++VG++VD+ IN + IAKGE Sbjct: 37 PGSLERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKVGDAVDVMINGRIIAKGE 96 Query: 126 ITIMEEDDTHFGVRVIEILN 145 I +++E+ + FGV + E+++ Sbjct: 97 IVVLDEEGSRFGVTLTEMID 116 >gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC BAA-430] gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC BAA-430] Length = 279 Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 Q + + + + N +++++ +++++ +G M + +++ + G V+ Sbjct: 171 QALEESSTGNGEAQAKVELNNAEMKNMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVV 230 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L++ + +++ ++++ IAKGE+ I++ +FG+++ EI + Sbjct: 231 ELNQLANDPLEVLVDDKVIAKGEVVIVD---GNFGIQITEIAPKK 272 >gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori SouthAfrica7] Length = 282 Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 62/113 (54%), Gaps = 3/113 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + E + ++ +E + ++ N +++++ + +++ +G M + ++V Sbjct: 165 ESQFETKKEPESAESATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVV 224 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 225 SMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 274 >gi|27904580|ref|NP_777706.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395830|sp|Q89AZ3|FLIN_BUCBP RecName: Full=Flagellar motor switch protein FliN gi|27903977|gb|AAO26811.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 134 Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 N + IM++PV + I +G+ + I +L+ L ++ LDK G+ ++I +N Sbjct: 45 NSKNDISSKMKFIMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGY 104 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILN 145 IA GE+ + E +G+R+I I++ Sbjct: 105 VIATGELVVTE---NKYGIRIINIID 127 >gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1] gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5] gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5] gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1] Length = 293 Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + + N +++++I + +++ +G M + ++V++ G V+ L++ V + ++I ++++ Sbjct: 200 PLEQTEIRNINMLLDIKLNVRVRIGQKKMILKDVVSMDIGSVVELNQMVNDPLEILVDDK 259 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 IAKGE+ I++ +FG+++ EI + Sbjct: 260 VIAKGEVVIVD---GNFGIQITEIGTKK 284 >gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] Length = 128 Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 I S + + N + +PV++ + L S M + L + +GDVI LD+ VG Sbjct: 27 IFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVG 86 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 E +DI +N + +GE+ E +GVR++EI Sbjct: 87 EPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 117 >gi|328545472|ref|YP_004305581.1| flagellar motor switch protein [polymorphum gilvum SL003B-26A1] gi|326415213|gb|ADZ72276.1| Probable flagellar motor switch protein [Polymorphum gilvum SL003B-26A1] Length = 136 Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 69/119 (57%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 T T N+ +++ + L N D I+ IPV +Q++LGS M Sbjct: 12 TPAGKQTINAAGPANFAKIESGGRKAARMGTEDLIGDERNLDTILGIPVNIQVVLGSATM 71 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++NL+ L +G VI L+ RVGE VDI +N + +A+GE+ ++E+D++ FGV + EI++AQ Sbjct: 72 LVANLLKLGRGAVIPLNHRVGEPVDIVVNGRVVARGEVVVVEDDNSRFGVSLTEIISAQ 130 >gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1] gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5] gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5] gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1] Length = 117 Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + + P + LE+ +++ ++++ + LGS + + ++ +G Sbjct: 3 PVNPRLKKQPTLNPRELELTTYLEELINDYKGLLDMEITFMAELGSTFIPLREVLRFERG 62 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 VI L K GESVD +N + I KGE+ + E+ + +R+ E+L++ Sbjct: 63 SVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK---NLAIRLNEVLDS 106 >gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] Length = 123 Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 9/121 (7%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81 + +P+ D + S N++ + + + +SEP++ + L + + IPV + + Sbjct: 1 MSSPISDNDFDSLINDAGLNLDEP----VSEPVAEQAPASLPQ--QDLSFFGKIPVNVTL 54 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + S + + L+++ G VI LDK GE +D+ +N AK E+ +M ++G+R++ Sbjct: 55 EVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMN---GNYGLRIV 111 Query: 142 E 142 E Sbjct: 112 E 112 >gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 120 Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + D+ + + NIPV + + + S + + +L+ +G VI LD Sbjct: 16 NFDDFQLEENLSEPAYTPLPERDLSFFKNIPVTVTLEVASKEVALGDLMKAGEGSVIELD 75 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K GE +D+ +N + E+ ++ + +G+R+I++++ Sbjct: 76 KMNGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVVDE 113 >gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC 51449] gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449] Length = 278 Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + N ++I+++ + +++ +G M + +++ + G VI L++ + ++I +++ Sbjct: 185 PALSATEYKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEILVDD 244 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + IAKGE+ I++ +FG+++ +I + Sbjct: 245 KVIAKGEVVIVD---GNFGIQITDIGTKR 270 >gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267] gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267] Length = 277 Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 59/103 (57%), Gaps = 3/103 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 D ++ ++ ++++ + N LIM++ + + + +GS M + +++ + G VI L Sbjct: 171 KDQKESAQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLKDVLTMDIGSVIEL 230 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ + ++I I+++ +A GE+ I++ +FG+++ +I + Sbjct: 231 NQLANDPLEILISDKVVALGEVVIVD---GNFGIQITQIGTKK 270 >gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d] Length = 287 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E I + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEETTKSAAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] Length = 269 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 60/96 (62%), Gaps = 3/96 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 ++I + IS S+ + ++ D++M++ +++++ +G M + +++++ G ++ LD+ Sbjct: 164 NDIKDKISESSHELNKEIPSQLDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQL 223 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 E +DI I ++KI +GE+ I++ +FG+++ I Sbjct: 224 ANEPLDILIEDKKIGEGEVVIVD---GNFGIQITSI 256 >gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179] gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC 49179] Length = 139 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + K P + LE+ +++ ++++ V LGS + + ++ +G Sbjct: 25 PVNPKIKKQPTLNPREIELTTYLEELIEDYKGLLDMEVTFMAELGSTSIPLGEVLRFERG 84 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 VI L K GESVD +N + I KGE+ + E+ + +R+ E+L++ Sbjct: 85 SVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK---NLAIRLNEVLDS 128 >gi|308273527|emb|CBX30129.1| hypothetical protein N47_D29380 [uncultured Desulfobacterium sp.] Length = 71 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 45/66 (68%), Gaps = 3/66 (4%) Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + LG M I++L+ L +G +I L+K++G+ +DI I ++ IAKGE+ ++++ FG+R+ Sbjct: 1 MELGQTRMLINDLLQLGQGSIIELNKQIGDPIDIFICDKLIAKGEVVVVDD---KFGIRL 57 Query: 141 IEILNA 146 I++ Sbjct: 58 TNIISP 63 >gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01] gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01] Length = 123 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81 + +P+ D + S N++ + + ++ D+ E + + IPV + + Sbjct: 1 MSSPISDNDFDSLINDAGLNLDESGSDSAPEQAPTALPQ------QDLSFFGKIPVNVTL 54 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + S + + L+++ G VI LDK GE +D+ +N AK E+ +M ++G+R++ Sbjct: 55 EVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMN---GNYGLRIV 111 Query: 142 E 142 E Sbjct: 112 E 112 >gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449] gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC 51449] Length = 117 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 D I + LE N+ ++++ LGS + + ++ KG +I L Sbjct: 8 DKQRIHSAKEIELATYLEDMMKNYTGLLDMEALFNAELGSTKIPLGEILRFEKGSIIDLG 67 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K GESV+I IN + I KGE+ + E + +R+ EIL++ Sbjct: 68 KPAGESVEIFINGRVIGKGEVMVYE---RNLAIRINEILDS 105 >gi|83944188|ref|ZP_00956644.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp. EE-36] gi|83845055|gb|EAP82936.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp. EE-36] Length = 114 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 4/109 (3%) Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 N + Q + DN ++ + + L+ + D I + + ++++LG M IS L+NL Sbjct: 4 NDQDKTQADLTDNNAQDAETKAPAGLDG--KSLDAIFGVKLDVRVVLGRSRMPISELLNL 61 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 +KG VI LD+RVGE VDI IN++ +A+G++ ++ D GV + EI+ Sbjct: 62 TKGSVIELDRRVGEPVDIMINDRMVARGDLVRVQGDS--LGVALREIVK 108 >gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51] Length = 287 Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E I + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|260779322|ref|ZP_05888214.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] gi|260605486|gb|EEX31781.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC BAA-450] Length = 122 Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + + + NIPV + + + S + + +L+ +G VI LDK GE +D+ +N Sbjct: 31 DAAVPTPERDLSFFKNIPVTVTLEVASKDIALGDLMKAGEGSVIELDKLNGEPLDVKVNG 90 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + E+ ++ E +G+R+I+I+++ Sbjct: 91 SLMGHAEVVVVNE---KYGLRLIDIVDS 115 >gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] Length = 118 Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 S + K + +PV + + L S M + L + +GDV+ LD+ VGE Sbjct: 20 AEEQSHKPKVQAKPVKDMSFFHQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEP 79 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +DI +N + +GE+ + +GVR++E+ Sbjct: 80 LDIRVNGALLGRGEVVEVN---GRYGVRLLEV 108 >gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein [uncultured bacterium] Length = 117 Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 +S + + +PV++ +LG+ +Q+S ++ L +G V+ LD+ VGE VDI NN Sbjct: 30 PKKAARSDGRMEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANN 89 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + IA+GE+ ++E+ +++ +I+ + Sbjct: 90 RLIARGEVVVVED---RLAIQITDIIRS 114 >gi|209966468|ref|YP_002299383.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|209959934|gb|ACJ00571.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 105 Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 57/91 (62%), Gaps = 3/91 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +++S+ T + I+++PV++ + LG M+IS L+ L DV+ L++ VGE VD Sbjct: 2 AATNSDAAESGETPERNSILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVD 61 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + +N++ +A+GE+ +++ G+ ++E++ Sbjct: 62 LFVNDRLVARGELVVVD---GRLGLTIVELM 89 >gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] Length = 124 Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 I S + + N + +PV++ + L S M + L + +GDVI LD+ VG Sbjct: 23 IFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVG 82 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 E +DI +N + +GE+ E +GVR++EI Sbjct: 83 EPLDIRVNGALLGRGEVV---EVAGRYGVRLLEI 113 >gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16] Length = 287 Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E I + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas ingrahamii 37] gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas ingrahamii 37] Length = 120 Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 24 NPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIIL 83 NPL + + + NDV++IS+ S S K + + +IPV + + + Sbjct: 2 NPLDNDLDNEFDLDDMDFDLINDVNDISDAPPSSSA----KKAKSLSFLNDIPVHVTVEV 57 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G+ + + L+ + V+ L K G+++DI +N + A GE+ + H+GV++ +I Sbjct: 58 GAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVAN---GHYGVKITDI 114 Query: 144 LNA 146 +N Sbjct: 115 VNK 117 >gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32] Length = 287 Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E I + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10] gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10] Length = 287 Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E + + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEETTKSATEEVKTKDESLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4] gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4] Length = 287 Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E + + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30] Length = 287 Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E + + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae 12198] gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae 12198] Length = 112 Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 3/93 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + LE +++ +++I LGS + I ++N +G VI L K GESVD Sbjct: 12 REQELTTYLEDMIQSYEGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVD 71 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + IN + + +GE+ + E+ + +R+ EIL++ Sbjct: 72 VFINTRIVGRGEVMVYEK---NLAIRLNEILDS 101 >gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83] Length = 287 Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E + + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEEKTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1] gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1] Length = 287 Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 59/100 (59%), Gaps = 3/100 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ Sbjct: 183 QSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546] gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546] Length = 122 Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 N + + NIPV + + + S + + +L+ +G VI LDK GE +D+ +N Sbjct: 31 ENSVAMPERDLSFFKNIPVTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNG 90 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + E+ ++ E +G+R+I+++++ Sbjct: 91 SLMGHAEVVVVNE---KYGLRLIDVVDS 115 >gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826] gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826] Length = 284 Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + N LIM++ + M++ +GS M + +++ + G VI L++ + ++I I Sbjct: 191 KGEFSAEEMRNIGLIMDVRLPMRVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILIG 250 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ IA GE+ I++ +FG+++ +I + + Sbjct: 251 DKVIALGEVVIID---GNFGIQITQIGSKR 277 >gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A] Length = 287 Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E + + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEEKTKSTTEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277] gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277] Length = 277 Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 56/103 (54%), Gaps = 3/103 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 D ++ + ++ + N LIM++ + + + +GS M + +++ + G VI L Sbjct: 171 KDHKEPAQQATPAKGDLSIEEMRNIGLIMDVCLPLHVRIGSKRMLLKDVLTMDIGSVIEL 230 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ + ++I I+++ +A GE+ I++ +FG+++ +I + Sbjct: 231 NQLANDPLEILISDKVVALGEVVIVD---GNFGIQITQIGTKK 270 >gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57] Length = 287 Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + ++ + +E + + ++ N +++++ + +++ +G M + ++V+ Sbjct: 171 EKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVS 230 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 231 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180] gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180] Length = 287 Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 59/100 (59%), Gaps = 3/100 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ Sbjct: 183 KSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489] gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489] Length = 284 Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 58/112 (51%), Gaps = 3/112 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 N +E N + + N +++++ +++++ +G M + +++ Sbjct: 169 NTTEDSDNVALDANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVIA 228 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ L++ +S+++ ++++ IAKGE+ I++ +FG+++ EI + Sbjct: 229 MDIGSVVELNQLANDSLEVLVDDKVIAKGEVVIVD---GNFGIQITEIAPKK 277 >gi|260767961|ref|ZP_05876895.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260615991|gb|EEX41176.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315179665|gb|ADT86579.1| Flagellar motor switch/type III secretory pathway protein [Vibrio furnissii NCTC 11218] Length = 122 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 6/101 (5%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 ++++ D+ +E+ + NIPV + + + S + + L+ +G VI LD Sbjct: 21 HLEDLEPETEGDTAPNVER---DLSFFRNIPVTVTLEVASKAIALGELMKAGEGSVIELD 77 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K GE +D+ +N + E+ ++ + +G+R+I++L++ Sbjct: 78 KLNGEPLDVKVNGALLGHAEVVVVND---KYGLRLIDVLDS 115 >gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879] gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879] Length = 128 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 D + P + + LE N++ ++++ V LG+ + ++ ++ KG +I L Sbjct: 15 DKKQVHTPREIELASYLEDMMANYEGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQ 74 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K G SV+I +N++ + KGE+ + E + +R+ EIL++ Sbjct: 75 KPAGASVEIFVNDRVVGKGEVMVYE---RNLAIRINEILDS 112 >gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium thermolithotrophum DSM 11699] Length = 122 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 46/74 (62%), Gaps = 3/74 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IP+++ I +GS + + ++ L ++ LD+ + E VDI IN + +AKG++ + E Sbjct: 44 DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIRE-- 101 Query: 134 THFGVRVIEILNAQ 147 ++G+++ +I+ + Sbjct: 102 -NYGIKITQIITPE 114 >gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS155] gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS155] Length = 118 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S+ S K N + +PV++ + L S M + L + +GDVI LD+ VGE +DI Sbjct: 22 SAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDI 81 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +N + +GE+ E +GVR++EI Sbjct: 82 RVNGALLGRGEVV---EVAGRYGVRLLEI 107 >gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175] Length = 118 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S+ S K N + +PV++ + L S M + L + +GDVI LD+ VGE +DI Sbjct: 22 SAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDI 81 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +N + +GE+ E +GVR++EI Sbjct: 82 RVNGALLGRGEVV---EVAGRYGVRLLEI 107 >gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464] Length = 290 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 187 STAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282 >gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 121 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E IPV + + + S + + L+ +G VI LDK GE Sbjct: 23 EQFDESPQLDTPNPQRGLSFFKKIPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEP 82 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +D+ +N + E+ ++ E +G+R+I+++++ Sbjct: 83 LDVKVNGSLMGHAEVVVINE---KYGLRLIDVVDS 114 >gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27] gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27] Length = 287 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 59/100 (59%), Gaps = 3/100 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ Sbjct: 183 QSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695] gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695] Length = 287 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 184 GVAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 244 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori HPKX_438_AG0C1] Length = 290 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 59/99 (59%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 187 STAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282 >gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori Lithuania75] Length = 287 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 58/100 (58%), Gaps = 3/100 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ Sbjct: 183 QGAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38] gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38] Length = 287 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 59/100 (59%), Gaps = 3/100 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ Sbjct: 183 QSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470] gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470] Length = 288 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 185 SATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 244 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 245 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 280 >gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum deleyianum DSM 6946] gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum deleyianum DSM 6946] Length = 103 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++D + K F+ +++I V LG+ + I L+ L KG VI L+K GESV++ Sbjct: 3 AADQEYVERKLLSGFENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVEL 62 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 INN+ KGE+ + E+ + +R+ EIL+++ Sbjct: 63 YINNKIFGKGEVMVYEK---NLAIRINEILDSK 92 >gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1] gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1] Length = 84 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 D+++++ VK+ + LGS + + ++ LS G V+ L + + V + +N+Q +A G Sbjct: 2 EEKALDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYG 61 Query: 125 EITIMEEDDTHFGVRVIEILNAQ 147 E+ ++E+ +FG+++ E++ ++ Sbjct: 62 EVVVVED---NFGIKITELVGSE 81 >gi|89068715|ref|ZP_01156101.1| Flagellar motor switch protein FliN [Oceanicola granulosus HTCC2516] gi|89045678|gb|EAR51740.1| Flagellar motor switch protein FliN [Oceanicola granulosus HTCC2516] Length = 132 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSD-SNNILEKSTDNFDLIMNIPVKMQ 80 D P DT ++P + L+ + + + + + + + ++N+ +++ Sbjct: 6 TDKPSPDT--AAPGQPDDTLLPELEAPEEQTVLENMVGEQVNGDGGRSIEAMLNVGLEVN 63 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 I+LG M IS L+ LS+G +I LDKR+GE VD+ ++++ +A+G++ + ++ GV + Sbjct: 64 IVLGRSRMPISQLLKLSRGSIIELDKRIGEPVDMIVSDRLVARGDLVRVGDN--RVGVTL 121 Query: 141 IEILN 145 EI+ Sbjct: 122 TEIVK 126 >gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7] Length = 290 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +E + + ++ N +++++ + +++ +G M + ++V++ G V+ L Sbjct: 183 KSTTEATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVEL 242 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 D+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 243 DQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282 >gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] Length = 293 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 7/113 (6%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNI----LEKSTDNFDLIMNIPVKMQIILGSCCMQI 90 T N+ + P SN I ++S+ N L+ +I +K+ + LG+ + Sbjct: 171 TGKEADAASNNESSSQGFPSLPTSNGIDSLLSDESSKNLKLLFDIKLKLSVRLGTKLFLL 230 Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +++ G++I L++ V E +DI +N KI +GE I+E FG+++ I Sbjct: 231 KDILKWDIGEIIELEQMVNEPLDILVNGIKIGEGEAVIVE---GKFGLKIKNI 280 >gi|307747018|gb|ADN90288.1| Hypothetical protein CJM1_0060 [Campylobacter jejuni subsp. jejuni M1] Length = 123 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +L + N +LIM++ + +++ +G+ M + +++ + G V+ L++ + ++I Sbjct: 27 AEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEI 86 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +++IA GE+ I++ +FGV++ EI + + Sbjct: 87 LIGDKRIAYGEVVIVD---GNFGVQITEIGSKK 116 >gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20] Length = 290 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 187 SAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282 >gi|163744332|ref|ZP_02151692.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] gi|161381150|gb|EDQ05559.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] Length = 154 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 ++ D P D ++ + + +D +E + E + ++N+ Sbjct: 25 PKTTEQDQPRADAFGNTASLGGDDAGVFPQLD--TEDSRNALAPRPEAGGAGINAMLNVG 82 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + +QI+LG M IS L+ L++G ++ L++++G VD+ ++++ +A+G++ + ED Sbjct: 83 LDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVSDRLVARGDLVKVGED--RL 140 Query: 137 GVRVIEILN 145 GV + +I+ Sbjct: 141 GVSLTQIVK 149 >gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] Length = 118 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 48/80 (60%), Gaps = 3/80 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + ++PV++ + L S + + L+ L +GD++ LD+ VGE +D+ +N + +GE+ Sbjct: 36 DMNFFSHLPVQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVV 95 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + +GVR++E+ ++ Sbjct: 96 EVN---GRYGVRLLEVEASK 112 >gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52] Length = 290 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 59/99 (59%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +E + + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 187 SATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 246 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 247 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 282 >gi|84502360|ref|ZP_01000496.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597] gi|84389172|gb|EAQ01969.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597] Length = 128 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 2/78 (2%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 N D ++N+ + +QI+LG M IS L+ LS+G +I LDK++GE VDI IN++ +A+G++ Sbjct: 47 NIDAMLNVGLNIQIVLGRTRMPISQLLKLSRGSIIELDKKIGEPVDIVINDRLVARGDLV 106 Query: 128 IMEEDDTHFGVRVIEILN 145 ++E+ GV +IEI+ Sbjct: 107 KLDEE--RVGVSLIEIVK 122 >gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] Length = 118 Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 K + +PV++ + L S M + L + +GDV+ LD+ VGE +DI +N + Sbjct: 30 SPKPVKDISFFHQLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALL 89 Query: 122 AKGEITIMEEDDTHFGVRVIEI 143 +GE+ + +GVR++E+ Sbjct: 90 GRGEVVEVN---GRYGVRLLEV 108 >gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128] gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8] gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128] gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8] Length = 287 Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 61/110 (55%), Gaps = 3/110 (2%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + ++ + E I + ++ N +++++ + +++ +G M + ++V++ Sbjct: 173 THQEEKEEATKSTIEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMD 232 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 233 IGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 279 >gi|219681459|ref|YP_002467844.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682015|ref|YP_002468399.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471134|ref|ZP_05635133.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621748|gb|ACL29904.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624302|gb|ACL30457.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085823|gb|ADP65905.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086396|gb|ADP66477.1| flagellar motor switch protein FliN [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086975|gb|ADP67055.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087552|gb|ADP67631.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 133 Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 6/114 (5%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISN 92 ++ + + DVD P + N+ L+ + D D I+N+PV + + LG+ ++I + Sbjct: 15 DSEKKIPTDQDVDKNLLPQENSKNSTLDNTIDVVDSKKTILNVPVNITVELGTSRIKIKD 74 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + SKG ++ L++ + E ++I +N IA GEI ++EE +G+R+ I N+ Sbjct: 75 FLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125 >gi|149189861|ref|ZP_01868141.1| flagellar motor switch protein [Vibrio shilonii AK1] gi|148836347|gb|EDL53304.1| flagellar motor switch protein [Vibrio shilonii AK1] Length = 122 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +S + NIPV + + + S + + +L++ +G +I LDK GE +D+ +N + Sbjct: 36 QSERDISFFKNIPVTVTLEVASKEVALGDLMSAGEGSIIELDKLNGEPLDVKVNGSLMGH 95 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 E+ ++ E +G+R+I+++++ Sbjct: 96 AEVVVVNE---KYGLRLIDVVDS 115 >gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori Gambia94/24] Length = 285 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 58/99 (58%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +E + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 242 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 277 >gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM 1251] gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251] Length = 283 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + ++ N LIM++ + +++ +G M + +++N+ G VI L++ + +DI Sbjct: 187 SATVSLSSDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDIL 246 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +++ IA+GE+ I++ +FGV++ I + Sbjct: 247 VDDNVIAEGEVVIVD---GNFGVQITSIGTKR 275 >gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99] gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] Length = 285 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 58/99 (58%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +E + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 242 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 277 >gi|15616703|ref|NP_239915.1| flagellar motor switch protein FliN [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386788|sp|P57183|FLIN_BUCAI RecName: Full=Flagellar motor switch protein FliN gi|25403545|pir||A84939 flagellar motor switch protein fliN [imported] - Buchnera sp. (strain APS) gi|10038766|dbj|BAB12801.1| flagellar motor switch protein fliN [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 133 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 6/114 (5%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISN 92 ++ + + DVD P + N+ L+ + D D I+N+PV + + LG+ ++I + Sbjct: 15 DSEKKIPTDQDVDKNLLPQENSKNSTLDNTIDIVDSKKTILNVPVNITVELGTSRIKIKD 74 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + SKG ++ L++ + E ++I +N IA GEI ++EE +G+R+ I N+ Sbjct: 75 FLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEE---KYGIRITNIKNS 125 >gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4] gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4] Length = 122 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 3/82 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + + +IPV + + + S + + +L+ +G VI LDK GE +D+ +N + + Sbjct: 37 AERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQA 96 Query: 125 EITIMEEDDTHFGVRVIEILNA 146 E+ ++ + +G+R+IE+ ++ Sbjct: 97 EVVVIND---KYGLRLIEVHDS 115 >gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908] gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 285 Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 58/99 (58%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +E + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 242 NDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 277 >gi|90577376|ref|ZP_01233187.1| flagellar motor switch protein [Vibrio angustum S14] gi|90440462|gb|EAS65642.1| flagellar motor switch protein [Vibrio angustum S14] Length = 121 Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 3/95 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 E S + IPV + + + S + + L+ +G VI LDK GE Sbjct: 23 EQFEETPQLDSSMSQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEP 82 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +D+ +N + E+ ++ E +G+R+I+++ + Sbjct: 83 LDVKVNGSLMGHAEVVVINE---KYGLRLIDVVES 114 >gi|89072283|ref|ZP_01158862.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89051815|gb|EAR57267.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 121 Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 S + IPV + + + S + + L+ +G VI LDK GE +D+ +N + Sbjct: 36 SQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHA 95 Query: 125 EITIMEEDDTHFGVRVIEILNA 146 E+ ++ E +G+R+I+++ + Sbjct: 96 EVVVINE---KYGLRLIDVVES 114 >gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01] Length = 122 Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 52/101 (51%), Gaps = 6/101 (5%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +++ + + E+ + +IPV + + + S + + +L+ +G VI LD Sbjct: 21 QLEDFETEQAFAPEPVAER---DLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELD 77 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K GE +D+ +N + + E+ ++ + +G+R+I++ ++ Sbjct: 78 KLNGEPLDVKVNGSLMGQAEVVVIND---KYGLRLIDVHDS 115 >gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp. fetus 82-40] gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus 82-40] Length = 276 Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 53/86 (61%), Gaps = 3/86 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + + N LIM++ + +++ +GS M + +++++ G VI L++ + +++ I ++++ Sbjct: 187 ITEEIKNIGLIMDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELNQLANDPLEVLIGDKQV 246 Query: 122 AKGEITIMEEDDTHFGVRVIEILNAQ 147 A GE+ I++ +FGV++ EI + Sbjct: 247 ALGEVVIVD---GNFGVQITEIGTKK 269 >gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense Az-Fu1] gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense Az-Fu1] Length = 192 Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 N+ +L++++P+ + + +GS M I +V LS V+ LD+ + E +D+ +N Sbjct: 94 QNLPADIEKKLNLLLDLPITITVEIGSKVMTIEEIVKLSPSSVVDLDRFITEPIDLKVNG 153 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +AKGE+ +E+ F +++ EIL + Sbjct: 154 VLVAKGELYQVED---QFAIKIKEILTKE 179 >gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10] gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10] gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d] gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20] gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464] gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16] gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30] gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57] gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83] Length = 123 Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 S T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + + Sbjct: 2 SETESNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 62 ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470] gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470] gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51] gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A] gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32] Length = 123 Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 S T ++++ I + + + ++ + + LE+ ++ ++++ + LGS + + Sbjct: 2 SETESNKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 62 ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|327478783|gb|AEA82093.1| flagellar motor switch protein FliN [Pseudomonas stutzeri DSM 4166] Length = 123 Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 4/110 (3%) Query: 35 TNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 N E LI + D+ + + + + + IPV + + + S + + L Sbjct: 7 DNEFENLINEGDLSLDAVDEPAVPAPAAAPAPRQDLSFFGKIPVNVTLEVASAEISLKEL 66 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + VI LDK GE +D+ +N AK E+ +M ++G+R++E+ Sbjct: 67 MECDTSSVIVLDKLAGEPLDVKVNGTLFAKAEVVVMN---GNYGLRIVEL 113 >gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12] gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12] Length = 287 Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 202 RNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEV 261 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 I++ +FG+++ +I + Sbjct: 262 VIVD---GNFGIQITDIGTKK 279 >gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 101 Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 SD +D +++I V+ LG+ + + L+ L G VI L+K GESV++ Sbjct: 2 SDEELSPNGLFHGYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELY 61 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 INN+ KGE+ + E+ + +R+ EIL+++ Sbjct: 62 INNRIFGKGEVVVYEK---NLAIRINEILDSK 90 >gi|296535009|ref|ZP_06897289.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] gi|296264664|gb|EFH11009.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC 49957] Length = 93 Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 51/75 (68%), Gaps = 2/75 (2%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 IM+IPV +Q++LG+ + ++ L NLS+G VI DK+VGE +D+ N + IA+GEI I ++ Sbjct: 19 IMDIPVNVQVVLGNKRLPMAALFNLSRGSVIEFDKKVGEPIDLMANERLIARGEIQITDD 78 Query: 132 DDTHFGVRVIEILNA 146 + + EI+++ Sbjct: 79 --GRLSISITEIVSS 91 >gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92] gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92] Length = 105 Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++D +M+I V LG+ + I+ L+ G VI L+K GESV++ INN+ KGE+ Sbjct: 17 KSYDELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEV 76 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 + E+ + +R+ EIL+++ Sbjct: 77 MVYEK---NLAIRINEILDSK 94 >gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio harveyi ATCC BAA-1116] gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116] Length = 122 Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +++ + + E+ + +IPV + + + S + + +L+ +G VI LD Sbjct: 21 QLEDFETEQAFAPEPVAER---DLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELD 77 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K GE +D+ +N + + E+ ++ + +G+R+I + ++ Sbjct: 78 KLNGEPLDVKVNGSLMGQAEVVVIND---KYGLRLINVHDS 115 >gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826] gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826] Length = 105 Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++D +M+I V LG+ + I+ L+ G VI L+K GESV++ INN+ KGE+ Sbjct: 17 KSYDELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEV 76 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 + E+ + +R+ EIL+++ Sbjct: 77 MVYEK---NLAIRINEILDSK 94 >gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio sp. Ex25] gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio sp. Ex25] gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] Length = 123 Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 + + +D S + + +IPV + + + S + Sbjct: 2 SEAPETNAFDAEELNFDDFQLEDFEAESTLQQEPATAERDLSFFKSIPVTVTLEVASKEI 61 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +L+ +G VI L+K GE +D+ +N + E+ ++ + +G+R+I++ ++ Sbjct: 62 PLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVHDS 116 >gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818] gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG 18818] gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG 18818] Length = 116 Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 D I + LE N+ ++++ V LG+ + + ++ KG +I L Sbjct: 8 DKQRIHSAKEIELATYLEDMMKNYTGLLDMEVIFNAELGNTKIALGEILRFEKGSIIDLG 67 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K GES++ IN + I KGE+ + E + +R+ EIL++ Sbjct: 68 KPAGESIETFINGRVIGKGEVMVYE---RNLAIRINEILDS 105 >gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1] gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75] Length = 123 Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 S T +++ I + + + ++ + + LE+ ++ ++++ + LGS + + Sbjct: 2 SETEANKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 62 ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|23013050|ref|ZP_00053002.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magnetotacticum MS-1] Length = 94 Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 D+ N DN + + ++ V++ +LG+ + I+ L+ L +G V+ LD++V + VD Sbjct: 2 ADDDAINAALGIGDNREAVYDVSVELSAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVD 61 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +N +++ + E+ ++E+ H V + E+L Sbjct: 62 LYVNRKRVCRAEVVVVED---HLAVTITEVLK 90 >gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36] gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36] Length = 122 Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + + NIP+ + + + S + I +L+ LS G VI LDK E +D+ +N Q +A Sbjct: 35 KPLKKDLSFFHNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLA 94 Query: 123 KGEITIMEEDDTHFGVRVIEILN 145 E+ ++ +GV++I++++ Sbjct: 95 TAEVVVVN---GKYGVKLIDVVD 114 >gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695] gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695] Length = 123 Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 S T +++ + + + + ++ + + LE+ ++ ++++ + LGS + + Sbjct: 2 SETEANKLKVAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQ 61 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 62 ILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|147678413|ref|YP_001212628.1| flagellar motor switch/type III secretory pathway protein [Pelotomaculum thermopropionicum SI] gi|146274510|dbj|BAF60259.1| flagellar motor switch/type III secretory pathway protein [Pelotomaculum thermopropionicum SI] Length = 126 Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 57/106 (53%), Gaps = 4/106 (3%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + D+ + P + + ++ + + ++ +++ + LG M++ ++ L Sbjct: 12 ARASSSDADIKKVQFPPLTPVKGM-DRVKTSMSHLEDVQIEISVELGQTVMKVREVLGLE 70 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +G VI LDK +GE+V++ +N Q+ A+GE+ ++ + FGVR+ I Sbjct: 71 QGSVIRLDKAIGEAVEVVLNEQRFARGEVVVINDS---FGVRITSI 113 >gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum DSM 6946] gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum DSM 6946] Length = 286 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 ++ + N +LI ++ + +++ +GS M + +++++ G VI LD+ + ++I + + Sbjct: 194 PSMSPEEISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEILVGD 253 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + IA GE+ I++ +FGV++ EI + Sbjct: 254 KVIAMGEVVIVD---GNFGVQIGEIGTKR 279 >gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus 82-40] gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp. fetus 82-40] Length = 101 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 SD +D +++I V+ LG+ + + L+ L G VI L+K GESV++ Sbjct: 2 SDEELSPNGLFHGYDELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELY 61 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 INN+ KGE+ + E+ + +R+ EIL+++ Sbjct: 62 INNRIFGKGEVMVYEK---NLAIRINEILDSK 90 >gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180] gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180] Length = 123 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++ Sbjct: 4 TESNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908] gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24] gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 123 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T ++++ I + + + ++ + + LE+ ++ ++++ + LGS + + ++ Sbjct: 4 TESNKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3] gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3] Length = 122 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +++ + + E+ + +IPV + + + S + + +L+ +G VI LD Sbjct: 21 QLEDFETEQAFAPEPVAER---DLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELD 77 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 K GE +D+ +N + + E+ ++ + +G+R+I + ++ Sbjct: 78 KLNGEPLDVKVNGSLMGQAEVVVIND---KYGLRLINVHDS 115 >gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52] Length = 123 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T ++++ I + + + ++ + + LE+ ++ ++++ + LGS + + ++ Sbjct: 4 TESNKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str. Sheeba] gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] Length = 283 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 N +++++ + +++ +G M + ++V++ G V+ LD+ V + ++I ++++ IAKGE+ Sbjct: 198 RNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEV 257 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 I++ +FG+++ +I + Sbjct: 258 VIVD---GNFGIQITDIGTKK 275 >gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1] gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1] Length = 123 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T ++++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++ Sbjct: 4 TESNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7] Length = 123 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T +++ I + + + S+ + + LE+ ++ ++++ + LGS + + ++ Sbjct: 4 TEPNKLKIAEKEKEKASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQIL 63 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 315 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 7/96 (7%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 P+ D I + +++I + + + +GS + ++++ +G V+ LDK+ G Sbjct: 226 TPLQYDREQIGDDKKK----LLDITLDVSVRIGSTVCSVKDVLSFKEGQVLVLDKQAGSP 281 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 D+ N + I +G++ + + HFG R+IEI+ + Sbjct: 282 ADVVANGELIGRGDVLVSGD---HFGARIIEIVGKR 314 >gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329] Length = 123 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + +D + + + +IPV + + + S + + +L+ +G V Sbjct: 15 LNFDDFQLEDFEAETTRQPEPVAAERDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTV 74 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I L+K GE +D+ +N + E+ ++ + +G+R+I++ ++ Sbjct: 75 IELEKLNGEPLDVKVNGSLLGHAEVVVVND---KYGLRLIDVHDS 116 >gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99] gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27] gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12] gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128] gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38] gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8] gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27] gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12] gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128] gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38] gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8] gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7] Length = 123 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + LE+ ++ ++++ + LGS + + ++ KG VI L K GESVD + Sbjct: 26 ELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFV 85 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + I KGE+ + E + +R+ EIL++ Sbjct: 86 NGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] Length = 123 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 T +++ I + + + ++ + + LE+ ++ ++++ + LGS + + ++ Sbjct: 4 TEANQLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIIFSAELGSTQIPLLQIL 63 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 KG VI L K GESVD +N + I KGE+ + E + +R+ EIL++ Sbjct: 64 RFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAIRLNEILDS 112 >gi|327254532|gb|EGE66148.1| surface presentation of antigens family protein [Escherichia coli STEC_7v] Length = 123 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 60/100 (60%), Gaps = 5/100 (5%) Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +DV +++P +D+ + ++ +D+ L+ IPV + + + S + +++L+N+ VI Sbjct: 16 DDVAPVTKPADADTLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112 >gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 123 Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST---DNFDLIMNIPVKMQIILGSCCM 88 S + ++ + D+ + + ++ + +IPV + + + S + Sbjct: 2 SEALETNAFDAEELNFDDFQLEDFEAEDTLQQEPATAERDLSFFKSIPVTVTLEVASKEI 61 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +L+ +G VI L+K GE +D+ +N + E+ ++ + +G+R+I++ ++ Sbjct: 62 PLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVND---KYGLRLIDVHDS 116 >gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018] gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018] Length = 289 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 + + E +Q +S S +N+ + ++ N +L+ N+ +K+ + LG+ + Sbjct: 167 SAITGIYQEEPKVQVTPSTPVSNNTGSSNNSSVTPTSKNLELLYNVKLKLSVRLGTKIVL 226 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + +++ G++I L++ V E ++I IN KI +GE I+E FG+++ I+N Sbjct: 227 LKDILRWDVGEIIELEQMVNEPLEILINGVKIGEGEAVIVE---GKFGLKIKRIINE 280 >gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH] gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH] Length = 270 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 54/86 (62%), Gaps = 3/86 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 L+ N +++++I +++++ +GS M + +++ + G ++ L++ E +DI I ++KI Sbjct: 180 LKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAKEPLDILIEDKKI 239 Query: 122 AKGEITIMEEDDTHFGVRVIEILNAQ 147 +GE+ I++ +FG+++ I + + Sbjct: 240 GEGEVVIVD---GNFGIQITSIGSRE 262 >gi|307720639|ref|YP_003891779.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] gi|306978732|gb|ADN08767.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] Length = 294 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE------KSTDNFDLIMNIPVKMQII 82 NV P++ S + + + + S S+N E + N LIM++ + +++ Sbjct: 165 KNVLFPSDTSSESAEIEENRSTAAASSHISSNCEEDITLSNEEMKNIALIMDVKLPVRVR 224 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 +G M + +++N+ G VI L++ + ++I ++N +A+GE+ I++ +FG++V Sbjct: 225 IGKKRMLLKDVLNMDIGSVIELNQLANDPLEILVDNHVVAQGEVVIVD---GNFGIQVTT 281 Query: 143 ILNAQ 147 I + Sbjct: 282 IGTKK 286 >gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 260.94] gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 260.94] gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 102 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + Sbjct: 8 NIYHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 KGE+ + E+ + +R+ EIL+++ Sbjct: 68 IFGKGEVMVYEK---NLAIRINEILDSK 92 >gi|54307254|ref|YP_128274.1| putative flagellar motor switch protein [Photobacterium profundum SS9] gi|46911674|emb|CAG18472.1| putative flagellar motor switch protein [Photobacterium profundum SS9] Length = 117 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 S+ + + I NIPV + + + S + + +L+N+ G VI LDK GE++D+ +N Sbjct: 24 QAPEATSSQDMNFIRNIPVNLTLEVASTELMVGDLMNIGLGTVIELDKISGEAMDVKVNG 83 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILN 145 + E+ I+ +G+R++ +++ Sbjct: 84 TLLGHAEVVIVN---NKYGLRLVSVVD 107 >gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277] gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277] Length = 118 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 5/110 (4%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 M + +++ + + + E+ ++D +M+I V LG+ + + L+ L Sbjct: 1 MSEELQEINAVETALQGVQEMLQERGGLFKSYDELMDIGVDFISELGTTTISVKQLLKLE 60 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 G VI L+K GESV++ INN+ KGE+ + E+ + +R+ EIL+++ Sbjct: 61 VGSVIDLEKPAGESVELFINNRIFGKGEVMVYEK---NLAIRINEILDSK 107 >gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus Desulforudis audaxviator MP104C] gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus Desulforudis audaxviator MP104C] Length = 127 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 4/106 (3%) Query: 43 QKNDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 V + P + + + + ++ V + LG M + ++L +G V Sbjct: 17 PGPTVKKVQFPRFEQAGTPGMPGVRISLEYLDDVEVDVSAELGQTAMTVREFLSLHEGSV 76 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I LD+ GE++D+ +N K+A+GE+ ++ + F +R+ I + Q Sbjct: 77 IGLDRAAGETIDVVVNGVKLARGEVLVINDL---FVLRIHSIAHPQ 119 >gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630] gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile QCD-63q42] gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC 43255] gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile] Length = 124 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 66/113 (58%), Gaps = 3/113 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 ++ ++ + V++ + + ++ E + +N I+++ +++ +++G M + +++ Sbjct: 8 SDEEAKMLLNDKVESEVDGDDELALDVSEVNRNNIQRILDLKLELSVVIGRTKMTLRDIL 67 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 NL KG +I LD + V+I I+N+ +A G++ +++ +FGV++ I++ + Sbjct: 68 NLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVVD---LNFGVKITSIVSEE 117 >gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267] gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267] Length = 118 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++D +M+I V LG+ + + L+ L G VI L+K GESV++ INN+ KGE+ Sbjct: 30 KSYDELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEV 89 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 + E+ + +R+ EIL+++ Sbjct: 90 MVYEK---NLAIRINEILDSK 107 >gi|157147124|ref|YP_001454443.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895] gi|157084329|gb|ABV14007.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895] Length = 132 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 4/103 (3%) Query: 41 LIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + Q++ V+ NI + ++ N L IPV + + + S + ++ L++++ Sbjct: 22 MTQEDTVEGNIRLDLQPETRNTAMTDIRKMALFSRIPVTLTLEVASVNISLAELMSVNSD 81 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+ LDK GE +DI +N K E+ ++ + +G+R+IE Sbjct: 82 SVVELDKMAGEPLDIKVNGILFGKAEVVVLND---KYGLRIIE 121 >gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] Length = 467 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 16/119 (13%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 ++ + ++P + ++ +D++S+P S DL+ ++P+++ + L Sbjct: 365 EEEDFTNPELDVPPELEGAALDDVSKPDGS-------------DLLGDVPLQIAVELARV 411 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + +V L G V+ L++ GE V++++N + +A+GE+ E + GVR+I + + Sbjct: 412 PVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELV---ELEGQLGVRIITLAS 467 >gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221] gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 84-25] gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei 269.97] gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni] gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221] gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 81-176] gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 84-25] gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei 269.97] gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni S3] gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni 305] gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 327] Length = 102 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + Sbjct: 8 NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 KGE+ + E+ + +R+ EIL+++ Sbjct: 68 IFGKGEVMVYEK---NLAIRINEILDSK 92 >gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228] gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20] gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228] gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20] Length = 102 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + KGE+ Sbjct: 15 QSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEV 74 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 + E+ + +R+ EIL+++ Sbjct: 75 MVYEK---NLAIRINEILDSK 92 >gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia oklahomensis EO147] gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia oklahomensis C6786] Length = 115 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + D E S ++ I D L+ IPV++ + +GS + ++ L+ Sbjct: 2 EPTDQPDLDVLLDDLAPEASDSPADAIERPRRDPMQLLAKIPVQLTLEVGSATITLAELM 61 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +G V+ LD+ GE + I IN + E+ + + ++G++++++ Sbjct: 62 AIEEGSVLELDRLAGEPLLIKINGTPVGHAEVVVSGD---NYGLKLLDL 107 >gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni M1] Length = 105 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + Sbjct: 11 NIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKR 70 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 KGE+ + E+ + +R+ EIL+++ Sbjct: 71 IFGKGEVMVYEK---NLAIRINEILDSK 95 >gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] Length = 122 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + K + +PVK+ + L S + + +L + +GDVI LD+ VGE++DI + Sbjct: 29 SEPPAIRKPLKHLSFFQQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRV 88 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143 N + KGE+ E +GVR++E+ Sbjct: 89 NGALLGKGEVV---EVGGRYGVRLLEV 112 >gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] Length = 119 Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 + IPV + + +GS + +++LVN+ +G V+ LDK GE +DI +N I + E+ + Sbjct: 40 FLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAG 99 Query: 131 EDDTHFGVRVIEI 143 + ++G+RV+E+ Sbjct: 100 D---NYGLRVVEL 109 >gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 116 Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 + IPVK+ + +GS + +++L +S G V+ LDK GE +DI +N I + E+ + Sbjct: 38 FLRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSG 97 Query: 131 EDDTHFGVRVIEILNAQ 147 + ++G+RV+E+ + Q Sbjct: 98 D---NYGLRVVELNDLQ 111 >gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100] gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100] Length = 98 Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +++ I++I V LG+ M + L+ L G VI L+K GESV++ +N + KGE+ Sbjct: 10 QSYEDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEV 69 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 + E+ + +R+ EIL+++ Sbjct: 70 MVYEK---NLAIRINEILDSK 87 >gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus saanensis SP1PR4] gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus saanensis SP1PR4] Length = 100 Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 T DL+M+I + + G+ MQ+ ++ LS GDVI LD+ V + VD+ I ++ +A+GE Sbjct: 12 TPALDLLMDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVDLVIGDRIVARGE 71 Query: 126 ITIMEEDDTHFGVRVIEILNAQ 147 + ++ +F + V E+ Q Sbjct: 72 VVVLN---GYFALNVTEVAAPQ 90 >gi|331005447|ref|ZP_08328826.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989] gi|330420723|gb|EGG95010.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989] Length = 104 Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 63/107 (58%), Gaps = 7/107 (6%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 EM + K ++ +++ + S N + N D++ ++ +KMQ+ LG +Q+ L+ + + Sbjct: 5 EMSVSKAELKTLTQELLSGDNLL----AGNIDVLKDLKIKMQVSLGETEIQVDKLMTMKE 60 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 G V+ LD+ +DI IN + +A+G + ++++D FGV++ EI + Sbjct: 61 GSVVKLDREANSPLDIFINGKLVARGVMVVVDDD---FGVQITEISS 104 >gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans DSM 574] gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans DSM 574] Length = 131 Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS + + + ++ + + LG +++ ++NL G VI L+K G++++I Sbjct: 34 DSFRPERTISTSLSHLADVQITISAELGETTLKLREVLNLDVGSVIDLNKSAGDAINIYF 93 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 N++K AKGE+ ++ + F VR+ I+ + Sbjct: 94 NDRKAAKGEVIVVNDS---FAVRINSIIPPK 121 >gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile QCD-66c26] gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP 107932] gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile QCD-76w55] gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile QCD-97b34] gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile QCD-37x79] gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile R20291] gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile QCD-32g58] gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile R20291] Length = 124 Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 66/113 (58%), Gaps = 3/113 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 ++ ++ + V++ + + ++ E + +N I+++ +++ +++G M + +++ Sbjct: 8 SDEEAKMLLNDKVESEVDGDDELALDVSEVNRNNIQRILDLKLELSVVIGRTKMTLRDIL 67 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 NL KG +I L+ + V+I I+N+ +A G++ +++ +FGV++ I++ + Sbjct: 68 NLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVVD---LNFGVKITSIVSEE 117 >gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM 1251] gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas denitrificans DSM 1251] Length = 111 Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 ++ E S ++ ++++ V+ LG + + ++ L KG +I L K GESV+ +N Sbjct: 16 DSESELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNG 75 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + +GE+ + E+ + +R+ E+L++ Sbjct: 76 RILGRGEVMVYEK---NLAIRINEVLDS 100 >gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter alkaliphilus AHT 1] gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter alkaliphilus AHT 1] Length = 150 Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 5/121 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D Q+ S P +V+ + P + ++ + ++PV + + Sbjct: 24 DEVKQEKEGSQPKQEEPPAAPAEEVERVEFPEFVQAPQGAKE--RGVNFFESVPVTLDLE 81 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LG+ + + ++ L K +I LDK GE+ + +N + +A GE+ ++ + +FG RV E Sbjct: 82 LGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVIND---NFGFRVAE 138 Query: 143 I 143 + Sbjct: 139 V 139 >gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 414] gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 414] Length = 102 Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 NI +++ I++I V LG+ M ++ L+ L G VI L+K GESV++ IN + Sbjct: 8 NIHHGLLQSYEDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKR 67 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNAQ 147 KGE+ + E+ + +R+ EIL+++ Sbjct: 68 IFGKGEVMVYEK---NLAIRINEILDSK 92 >gi|114765261|ref|ZP_01444393.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Pelagibaca bermudensis HTCC2601] gi|114542396|gb|EAU45424.1| Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein [Roseovarius sp. HTCC2601] Length = 114 Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + ++ D ++N+ + +QI+LG M I+ L+ LS+G +I LDK +G+ V++ IN++ + Sbjct: 27 SKGGANSIDAMLNVGLNVQIVLGQTRMPIAQLLKLSRGSIIELDKSIGQPVEVVINDRLV 86 Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145 A+G++ +E+D GV +IEI+ Sbjct: 87 ARGDLVKLEDD--RLGVSLIEIVK 108 >gi|238762375|ref|ZP_04623346.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638] gi|238699360|gb|EEP92106.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638] Length = 105 Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++ +N + L IPV + + + S + +S L++++ VI LDK Sbjct: 4 SVPTASVPAVDNSQHEQQRKISLFSRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKLA 63 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 GE +DI IN + E+ ++ E +G+R+I Sbjct: 64 GEPLDIKINGIMFGQAEVVVVNE---KYGLRIIS 94 >gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] Length = 318 Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 5/127 (3%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISS--DSNNILEKSTDNFDLIMNIPVKMQ 80 P + V + + +S P +N ++ + + +I + + Sbjct: 194 QEPAAEEAVHTEELPFRKKEKTVAFREVSFPEFKYVPLDNQVDHIGEERKKLRDITLDVS 253 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + +G + +++ L KG ++TLDK+ G D+ +N + I K ++ + ++ F R+ Sbjct: 254 VRIGGTVCSVKDILALQKGQILTLDKQAGSPADVVVNGKLIGKSDVLVTDD---KFAARI 310 Query: 141 IEILNAQ 147 IEI+ + Sbjct: 311 IEIIGKR 317 >gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21] gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21] Length = 104 Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++++ I++I V LG+ M +S L+ L G VI L+K GESV++ IN + KGE+ Sbjct: 17 NSYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEV 76 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 + E+ + +R+ EIL+++ Sbjct: 77 MVYEK---NLAIRINEILDSK 94 >gi|114797692|ref|YP_760111.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] gi|114737866|gb|ABI75991.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] Length = 89 Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 ++M++PV++ ++LG + + L+ LS G+++ L+++ E VDI ++ + +A+G++ + Sbjct: 12 MLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKLVV-- 69 Query: 131 EDDTHFGVRVIEILNAQ 147 D GV + EI++++ Sbjct: 70 -TDGQLGVTLSEIIDSR 85 >gi|258622511|ref|ZP_05717533.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|258624666|ref|ZP_05719601.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|262173377|ref|ZP_06041054.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] gi|258583058|gb|EEW07872.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|258585211|gb|EEW09938.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|261890735|gb|EEY36722.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451] Length = 123 Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + IPV + + + S + + L+ +G VI LDK GE +D+ +N Sbjct: 32 QQTPPIERDLSFFKGIPVVVTLEVASKEITLGELMKAGEGTVIELDKLNGEPLDVKVNGS 91 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146 + EI I+ + +G+ + ++L++ Sbjct: 92 LMGHAEIVIVND---KYGLHLTDVLSS 115 >gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195] gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195] Length = 104 Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 3/81 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++++ I++I V LG+ M +S L+ L G VI L+K GESV++ IN + KGE+ Sbjct: 17 NSYEDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEV 76 Query: 127 TIMEEDDTHFGVRVIEILNAQ 147 + E+ + +R+ EIL+++ Sbjct: 77 MVYEK---NLAIRINEILDSK 94 >gi|283784011|ref|YP_003363876.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] gi|282947465|emb|CBG87012.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] Length = 123 Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 L + + + + ++ +++ L+ IPV + + + S + +++L+N+ Sbjct: 14 LTTEAPAAPANSATEALVTRLEDRFSESMSLLKRIPVTLTLEVSSVEIMLADLLNIDDDT 73 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 VI LDK GE +DI +NN + K E+ ++ E +G+RV+E + Sbjct: 74 VIELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLEFNTQE 117 >gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum acetoxidans DSM 771] gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum acetoxidans DSM 771] Length = 128 Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 6/95 (6%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 P++ ++ S + + ++PV + LG + + ++NLS G +I LD GE Sbjct: 27 TPLTPGGEQRIKTSIKHIE---DVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGEL 83 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 V ++INNQK +GE+ ++ + ++G+R+ + Sbjct: 84 VTMSINNQKFGRGEVMVIND---NYGIRITSVFKP 115 >gi|331671783|ref|ZP_08372579.1| flagellar switch protein [Escherichia coli TA280] gi|331070772|gb|EGI42131.1| flagellar switch protein [Escherichia coli TA280] Length = 127 Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%) Query: 44 KNDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 ++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ V Sbjct: 19 ADEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTV 78 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 I LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 79 IELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116 >gi|293408349|ref|ZP_06652188.1| conserved hypothetical protein [Escherichia coli B354] gi|291471527|gb|EFF14010.1| conserved hypothetical protein [Escherichia coli B354] Length = 127 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%) Query: 44 KNDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 ++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ V Sbjct: 19 ADEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTV 78 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 I LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 79 IELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116 >gi|114777575|ref|ZP_01452556.1| flagellar protein [Mariprofundus ferrooxydans PV-1] gi|114552046|gb|EAU54563.1| flagellar protein [Mariprofundus ferrooxydans PV-1] Length = 98 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +S + T N + IM++P+++ + LG + + + L++G VI ++K V Sbjct: 1 MSDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQ 60 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I N AKGE+ + GVR+ EI+ A Sbjct: 61 ILANGSIFAKGEVVSTGD---KLGVRITEIVPA 90 >gi|293403338|ref|ZP_06647429.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412] gi|298378949|ref|ZP_06988830.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302] gi|331640695|ref|ZP_08341842.1| flagellar switch protein [Escherichia coli H736] gi|331645398|ref|ZP_08346502.1| flagellar switch protein [Escherichia coli M605] gi|331666528|ref|ZP_08367402.1| flagellar switch protein [Escherichia coli TA271] gi|332281372|ref|ZP_08393785.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|291429191|gb|EFF02211.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412] gi|298280062|gb|EFI21566.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302] gi|331040069|gb|EGI12277.1| flagellar switch protein [Escherichia coli H736] gi|331045560|gb|EGI17686.1| flagellar switch protein [Escherichia coli M605] gi|331065752|gb|EGI37636.1| flagellar switch protein [Escherichia coli TA271] gi|332103724|gb|EGJ07070.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 127 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 5/100 (5%) Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 ++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ VI Sbjct: 20 DEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 79 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 80 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116 >gi|332162917|ref|YP_004299494.1| flagellar switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667147|gb|ADZ43791.1| Flagellar switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862338|emb|CBX72498.1| flagellar motor switch protein fliN [Yersinia enterocolitica W22703] Length = 129 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 N SE + + +++ + +N L + L IPV + + + S + +S L++ Sbjct: 15 NFSEQENEVSAPISVASVAAPVVDNSLHEQQRKISLFSRIPVTLTLEVASVDIPLSELMS 74 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 ++ VI LDK GE +DI IN + E+ ++ E +G+R+I Sbjct: 75 VNNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVNE---KYGLRIIS 118 >gi|323975948|gb|EGB71042.1| flagellar motor switch protein FliN [Escherichia coli TW10509] Length = 123 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 59/100 (59%), Gaps = 5/100 (5%) Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +DV +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ VI Sbjct: 16 DDVAPVTKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112 >gi|260893866|ref|YP_003239963.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii KC4] gi|260866007|gb|ACX53113.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii KC4] Length = 114 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 4/98 (4%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + P S++ K+T +L+ + +++ +LG + + L+ L +G VI LD+ G Sbjct: 9 VFSPFSTE-KAWEPKATTALELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAG 67 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E+VD+ ++ QK +GE+ ++ E F VRV+++ Q Sbjct: 68 EAVDLLLDGQKFGRGEVMVLNE---RFVVRVLQVFPPQ 102 >gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1] gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1] Length = 102 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 ++ V++ + LG M + +++ + +G V+ L++ E +D+T N + +A+GE+ Sbjct: 8 LKRFGDVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIA 67 Query: 129 MEEDDTHFGVRVIEILN 145 D F +R++E++ Sbjct: 68 ---QDGRFALRIVELVG 81 >gi|170679793|ref|YP_001742353.1| lateral flagellar export/assembly protein LfiN [Escherichia coli SMS-3-5] gi|300936106|ref|ZP_07151046.1| putative flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|170517511|gb|ACB15689.1| lateral flagellar export/assembly protein LfiN [Escherichia coli SMS-3-5] gi|300458726|gb|EFK22219.1| putative flagellar motor switch protein FliN [Escherichia coli MS 21-1] Length = 123 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 5/101 (4%) Query: 44 KNDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 ++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ V Sbjct: 15 ADEVAPVTKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTV 74 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 I LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 75 IELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112 >gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum kujiense DSM 16994] gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum kujiense DSM 16994] Length = 114 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + E S ++D ++++ V+ LG + + ++ L KG VI L K GESV+ +N Sbjct: 18 DPEKELSWMDYDGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPAGESVESYVNR 77 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + I KGE+ + E+ + +R+ E+L++ Sbjct: 78 RIIGKGEVMVYEK---NLAIRINEVLDS 102 >gi|238752882|ref|ZP_04614347.1| Flagellar switch protein [Yersinia rohdei ATCC 43380] gi|238708921|gb|EEQ01174.1| Flagellar switch protein [Yersinia rohdei ATCC 43380] Length = 112 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 V+ I P +DS L + L IPV + + + S + +S L+ ++ VI LD Sbjct: 11 PVEPIEAPSVNDS---LHEQQRKISLFSRIPVTLTLEVASVDIPLSELMTVNSDSVIELD 67 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 K GE +DI +N + E+ ++ E +G+R++ Sbjct: 68 KLAGEPLDIKVNGIMFGQAEVVVINE---KYGLRIVS 101 >gi|188494288|ref|ZP_03001558.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|188489487|gb|EDU64590.1| flagellar motor switch protein FliN [Escherichia coli 53638] Length = 127 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 5/100 (5%) Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 ++V +++ +++ + + +D+ L+ IPV + + + S + +++L+N+ VI Sbjct: 20 DEVAPVAKSADAETLVTRLEDHFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 79 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 80 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 116 >gi|170021378|ref|YP_001726332.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|218703507|ref|YP_002411026.1| lateral flagellar motor switch C ring FliN-like protein [Escherichia coli UMN026] gi|256020210|ref|ZP_05434075.1| Lateral flagellar export/assembly protein, Flagellar motor switch (C ring) (FliN-like) [Shigella sp. D9] gi|260853449|ref|YP_003227340.1| putative lateral flagellar motor switching and energizing component [Escherichia coli O26:H11 str. 11368] gi|260866395|ref|YP_003232797.1| putative lateral flagellar motor switching and energizing component [Escherichia coli O111:H- str. 11128] gi|300817290|ref|ZP_07097508.1| putative flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300898059|ref|ZP_07116428.1| putative flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|301646792|ref|ZP_07246646.1| putative flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|307136839|ref|ZP_07496195.1| putative lateral flagellar motor switching and energizing component [Escherichia coli H736] gi|307315215|ref|ZP_07594794.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|59889763|emb|CAH19118.1| Lateral flagellar export/assembly protein (FliN-like) [Escherichia coli] gi|169756306|gb|ACA79005.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|218430604|emb|CAR11470.1| Lateral flagellar export/assembly protein, Flagellar motor switch (C ring) (FliN-like) [Escherichia coli UMN026] gi|257752098|dbj|BAI23600.1| predicted lateral flagellar motor switching and energizing component [Escherichia coli O26:H11 str. 11368] gi|257762751|dbj|BAI34246.1| predicted lateral flagellar motor switching and energizing component [Escherichia coli O111:H- str. 11128] gi|284920027|emb|CBG33083.1| lateral flagellar export/assembly protein (FliN-like) [Escherichia coli 042] gi|300358237|gb|EFJ74107.1| putative flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|300530266|gb|EFK51328.1| putative flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|301075027|gb|EFK89833.1| putative flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|306905396|gb|EFN35933.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|315059470|gb|ADT73797.1| Lateral flagellar C-ring switch protein [Escherichia coli W] gi|315616846|gb|EFU97463.1| flagellar motor switch family protein [Escherichia coli 3431] gi|323158012|gb|EFZ44113.1| surface presentation of antigens family protein [Escherichia coli EPECa14] gi|323178513|gb|EFZ64091.1| surface presentation of antigens family protein [Escherichia coli 1180] gi|323181528|gb|EFZ66948.1| surface presentation of antigens family protein [Escherichia coli 1357] gi|323191517|gb|EFZ76778.1| surface presentation of antigens family protein [Escherichia coli RN587/1] gi|323379972|gb|ADX52240.1| surface presentation of antigens (SPOA) protein [Escherichia coli KO11] Length = 123 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 5/100 (5%) Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 ++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ VI Sbjct: 16 DEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112 >gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 128 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 8/127 (6%) Query: 21 HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ 80 D P+ D ++ + + +++ ++ + + + N N LI +IPV++ Sbjct: 7 AFDEPMDDLDLLGDDLDFDGPAMADELSSLPQDTALPTGN-----KSNMGLIRDIPVEVT 61 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + + + + ++++ VI LDK+ GE VDI IN G I I D +GV+V Sbjct: 62 VEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIII---QDGKYGVQV 118 Query: 141 IEILNAQ 147 + ++N + Sbjct: 119 LALVNNE 125 >gi|323171042|gb|EFZ56691.1| surface presentation of antigens family protein [Escherichia coli LT-68] Length = 123 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 5/100 (5%) Query: 45 NDVDNISEPISSDS--NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 ++V +++ +++ + ++ +D+ L+ IPV + + + S + +++L+N+ VI Sbjct: 16 DEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVI 75 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 LDK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 76 ELDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112 >gi|261341514|ref|ZP_05969372.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316] gi|288316312|gb|EFC55250.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316] Length = 133 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + L IPV + + + S + ++ L+ + VI LDK GE +D Sbjct: 37 QAEPESPAGIDDLRKMALFSRIPVTLTLEVASVEVSLAELMTVGHDSVIELDKMAGEPLD 96 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I +N K E ++ + +G+R++E + + Sbjct: 97 IKVNGILFGKAEAVVLND---KYGLRILEFNSKE 127 >gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22] gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22] Length = 288 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + ++ N +L+ N+ +K+ + LG+ + + +++ G++I L++ V E ++I IN KI Sbjct: 198 VTPTSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKI 257 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 +GE I+E FG+++ I+N Sbjct: 258 GEGEAVIVE---GKFGLKIKRIINE 279 >gi|306813324|ref|ZP_07447517.1| putative lateral flagellar motor switching and energizing component [Escherichia coli NC101] gi|305854087|gb|EFM54526.1| putative lateral flagellar motor switching and energizing component [Escherichia coli NC101] Length = 123 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + ++ +D+ L+ IPV + + + S + +++L+N+ VI LDK GE +DI +NN Sbjct: 32 TRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNN 91 Query: 119 QKIAKGEITIMEEDDTHFGVRVIE 142 + K E+ ++ E +G+RV+E Sbjct: 92 ILLGKAEVVVVNE---KYGLRVLE 112 >gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] Length = 113 Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Query: 54 ISSDSNNILEKSTDN--FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 + D +I E ++ ++ IPV++ + +G + +++L++ G + L++ GE Sbjct: 17 LGDDPKSITETASPRDPMRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEP 76 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + I +N + GE+ + E H+G+R+IE+ Sbjct: 77 LVIKVNGTPVGLGEVVVSGE---HYGLRIIEL 105 >gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] Length = 104 Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + + E S ++ I+++ V+ LG + ++ ++ L KG +I L K GESV+ Sbjct: 4 TKEFDPKKELSWMDYSGILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVES 63 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + + KGE+ + E+ + +R+ E+L++ Sbjct: 64 YVNGRILGKGEVMVYEK---NLAIRINEVLDS 92 >gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] Length = 127 Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 ++ N L+ +IPV + + + + + L+NL G V+ L+K G+ VDI IN Sbjct: 44 KEHVSNISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFG 103 Query: 123 KGEITIMEEDDTHFGVRVIEILNA 146 GEI + +GVR++ I+ Sbjct: 104 TGEIV---SKNGQYGVRLLSIIKK 124 >gi|288960009|ref|YP_003450349.1| flagellar motor switch protein [Azospirillum sp. B510] gi|288912317|dbj|BAI73805.1| flagellar motor switch protein [Azospirillum sp. B510] Length = 100 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 58/106 (54%), Gaps = 12/106 (11%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + +D+ S+P D+++ I + PV++++++G+ +++ +L+ L +G Sbjct: 1 MANIDDLLGASDPNDGDASSFA---------IGDAPVEIKVVIGTAMLRVRDLLKLGRGA 51 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 V+ LD+ + + D+ + +A+GE+ I+++ GV + + + + Sbjct: 52 VVELDRHLKDPTDVYVEGVLVARGEVAIIDD---KIGVTLTDFIKS 94 >gi|310816847|ref|YP_003964811.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare Y25] gi|308755582|gb|ADO43511.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare Y25] Length = 98 Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 D+ +LE + + N+P+++ I +G + L+ L + V+ LD+R+ + V+I Sbjct: 6 PDAKPLLEGANP---ALWNVPIEVTIAVGRSRPSVRELLALEENAVLQLDRRIDDPVEIY 62 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I ++ IA+GE+ E++ VR+ E+ Sbjct: 63 IGDRLIARGELQESEDEPGQLAVRLTEVATT 93 >gi|255262994|ref|ZP_05342336.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62] gi|255105329|gb|EET48003.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62] Length = 94 Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P+++ I +G + L++L++ ++ LDK + + VDI + ++ IA+GE+ +E+ + Sbjct: 15 DVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDTN 74 Query: 134 -THFGVRVIEILNA 146 + VR+ EI++ Sbjct: 75 ISQLAVRLTEIIDP 88 >gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis TXDOH] gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis Bt4] gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] Length = 115 Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 50/94 (53%), Gaps = 6/94 (6%) Query: 53 PISSDSNNILEKSTDNFD---LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 P + ++ D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ G Sbjct: 17 PTDAPADTATTADAPRRDPRHLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAG 76 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 E + + +N + E+ + E ++G+++I++ Sbjct: 77 EPLLVKVNGTTVGHAEVVVSGE---NYGLKIIDL 107 >gi|283834475|ref|ZP_06354216.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] gi|291070022|gb|EFE08131.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] Length = 123 Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 L + + + ++ +++ L+ IPV + + + S + +++L+N+ Sbjct: 14 LAPEATTPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVEVMLADLLNIDDDT 73 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 VI +DK GE +DI +NN + K E+ ++ E +G+RV+E Sbjct: 74 VIEMDKLAGEPLDIKVNNILLGKAEVVVVNE---KYGLRVLE 112 >gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM 14863] gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 227 Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 ++++I + + + LG + + ++++ G VITLD+ E +++ +N E+ + Sbjct: 149 VLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIG 208 Query: 131 EDDTHFGVRVIE 142 E +G+R++E Sbjct: 209 E---KYGIRIVE 217 >gi|144901008|emb|CAM77872.1| Surface presentation of antigens (SPOA) protein [Magnetospirillum gryphiswaldense MSR-1] Length = 90 Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + + + + V+ +LG+ + I+ L+ L +G V+ LD++V + VD+ +N + IA+ Sbjct: 9 GAKHQEAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARA 68 Query: 125 EITIMEEDDTHFGVRVIEILN 145 E+ ++E+ H V V E+L Sbjct: 69 EVVVVED---HLAVTVTEVLK 86 >gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1] gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1] Length = 127 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + N L+ +IPV + + + + + L+NL G V+ L+K G+ VDI IN Sbjct: 41 EAEQSDVSNVSLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGT 100 Query: 120 KIAKGEITIMEEDDTHFGVRVIEILNA 146 GEI + +GVR++ I+ Sbjct: 101 AFGTGEIV---SKNGQYGVRLLSIIKK 124 >gi|207109202|ref|ZP_03243364.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_CA4C1] Length = 78 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 LGS + + ++ KG VI L K GESVD +N + I KGE+ + E + + Sbjct: 3 FSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFE---RNLAI 59 Query: 139 RVIEILNA 146 R+ EIL++ Sbjct: 60 RLNEILDS 67 >gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] Length = 101 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 + + +EK ++ +++ V + +G M I +++L +G +I L K GES ++ Sbjct: 2 EEKFDDVEKLIPDYSNLIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVY 61 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +N + I KGE+ + E+ + +R+ E+L+A Sbjct: 62 VNGRIIGKGEVMVYEK---NLAIRLNEVLDA 89 >gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e] gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e] Length = 111 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + D L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N Sbjct: 21 ATAAHAPRRDPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVN 80 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEI 143 + E+ + E ++G++VI++ Sbjct: 81 GTTVGHAEVVVSGE---NYGLKVIDL 103 >gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus hydrogenoformans Z-2901] gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus hydrogenoformans Z-2901] Length = 124 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 45 NDVDNISEPISSDSNNILEKSTD-NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 +DV +P S + L+ NI +++ +G+ + + L+ L +GDV+ Sbjct: 15 DDVPTYRKPEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELTVRQLLALKEGDVLE 74 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 LDK +G+ +D+ I+ ++ A GE+ ++ E +GVR+ Sbjct: 75 LDKSIGDLIDLFIDGRRFAVGEVVVINEM---YGVRIT 109 >gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio acetiphilus DSM 12809] gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio acetiphilus DSM 12809] Length = 95 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 + + LG +++ L+N KG ++ K GE VD +N + +A GEI +++E F Sbjct: 17 DIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVLDE---RFA 73 Query: 138 VRVIEILNAQ 147 VR+ EIL + Sbjct: 74 VRITEILEKE 83 >gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia acanthamoebae str. Hall's coccus] Length = 462 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 48/86 (55%), Gaps = 6/86 (6%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 ++ +++ + D +IP+ + +G M + LV L G+++ L+ + +D+ +N Sbjct: 382 ASTANKQTAPSID---DIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVN 438 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEI 143 +++A+GE+ + + GVRV+EI Sbjct: 439 GKRVARGELLSIGDA---LGVRVLEI 461 >gi|294678996|ref|YP_003579611.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB 1003] gi|294477816|gb|ADE87204.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB 1003] Length = 90 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 ++ + + + +P+++ I +G + +L+ + + ++ LD+RV + V++ + ++ I Sbjct: 1 MDDTAPSSNPFSQVPIEITISVGKARPLVRDLLRMKRDSILPLDRRVEDPVELYVGDKLI 60 Query: 122 AKGEITIME-EDDTHFGVRVIEILNAQ 147 A+GE+T ME + + VR+ E+++ Q Sbjct: 61 ARGELTEMEGDSNGQLAVRLTEVVDLQ 87 >gi|146278776|ref|YP_001168935.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] gi|145557017|gb|ABP71630.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] Length = 88 Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 + +P+++ I +G + L+ L + V+ LD+RV + VD+ + ++ I +GE+T + Sbjct: 7 NPFSQVPIEITISVGRARPPVRELLKLQRDAVLALDRRVDDPVDLYVGDRLIGRGELTEL 66 Query: 130 E-EDDTHFGVRVIEILNAQ 147 E + VR+ E+ N + Sbjct: 67 EGDQAGQLAVRLTEVANLR 85 >gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei 668] gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305] gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei DM98] gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia pseudomallei 1655] gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei] gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei 668] gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305] gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia pseudomallei 1655] Length = 115 Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+ + Sbjct: 38 LLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVSG 97 Query: 131 EDDTHFGVRVIEI 143 E ++G+++I++ Sbjct: 98 E---NYGLKIIDL 107 >gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC 13177] Length = 115 Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 L+ IPV++ + +G+ + ++ L+N+ +G V+ LD+ GE + + +N + E+ + Sbjct: 38 LLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEVVVSG 97 Query: 131 EDDTHFGVRVIEI 143 E ++G+++I++ Sbjct: 98 E---NYGLKIIDL 107 >gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima DSM 10411] gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima DSM 10411] Length = 95 Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 N EK F+ +IP+KM L + +++ +L+ +GD+I +K GE ++I I N Sbjct: 2 NPNREKIKKEFEKYFDIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIEN 61 Query: 119 QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + GE+ +++ F +R+ I Sbjct: 62 KPLGMGEVIVLD---NKFAIRITNIFTK 86 >gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5] gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5] Length = 112 Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 3/74 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +IPV++++++G + L+ + G VI +D+ + VDI +N + IAKGE+ I++ Sbjct: 41 DIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVIID--- 97 Query: 134 THFGVRVIEILNAQ 147 GV++ E++ Q Sbjct: 98 GKIGVKIKEVVKEQ 111 >gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion translocase SctQ) [Candidatus Protochlamydia amoebophila UWE25] Length = 445 Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 E+ ++ + SS +++I E + IPV + + +G M + +L+ L Sbjct: 342 EVTEEEQSSPKNNASQSSPASSITENTKTGLITPNQIPVNLTVEVGRIQMSMDHLLKLEP 401 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G+++ L+ + + VD+TIN + + +GE+ + E GVRV+E+ Sbjct: 402 GNMLELNIKPEDGVDLTINGKIVGRGELLRIGEV---LGVRVLEL 443 >gi|116514990|ref|YP_802619.1| hypothetical protein BCc_047 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256844|gb|ABJ90526.1| flagellar motor switch protein, C-ring protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 134 Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + +IPV + I L + I L+ KG ++ L+ + + ++I INN IA GE+ Sbjct: 56 DSSALSSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELV 115 Query: 128 IMEEDDTHFGVRVIEILN 145 + ++ +GV++ ++L Sbjct: 116 V---NNDCYGVQITKLLT 130 >gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 111 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 57/99 (57%), Gaps = 3/99 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++ E +++ + DL+ ++ V + + LGS + + L+ L G ++TLD+++ Sbjct: 16 DLPEHEPAETTEARPVAHPRLDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQL 75 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + VD+ +N + +A+ EI +++ FG+R++EI+ + Sbjct: 76 DDCVDVRLNERTVARAEIVAVDD---RFGIRIVEIVEER 111 >gi|332559787|ref|ZP_08414109.1| FliN2 [Rhodobacter sphaeroides WS8N] gi|332277499|gb|EGJ22814.1| FliN2 [Rhodobacter sphaeroides WS8N] Length = 88 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + + + +P+++ I +G + L+ L + V+ LD+RV + V++ + ++ I +GE+ Sbjct: 4 ADQNPLTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDRLIGRGEL 63 Query: 127 TIME-EDDTHFGVRVIEILNAQ 147 T +E E VR+ E+ N + Sbjct: 64 TELEGEQAGQLAVRLTEVANLR 85 >gi|56695120|ref|YP_165467.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3] gi|56676857|gb|AAV93523.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3] Length = 109 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P + +K + + ++P+++ + +G I +L+ L + V+TLDKRV + V Sbjct: 10 PKRYRDMSDPQKPIEAKNPFNSVPIEITVSVGRARPLIRDLIGLGENAVLTLDKRVEDPV 69 Query: 113 DITINNQKIAKGEITIM-EEDDTHFGVRVIEILN 145 D+ + ++ +A+G++ + E VR+ EI + Sbjct: 70 DLYVGDRLVARGQLEELTGEQAGQLAVRLTEISD 103 >gi|83594500|ref|YP_428252.1| surface presentation of antigens (SPOA) protein [Rhodospirillum rubrum ATCC 11170] gi|83577414|gb|ABC23965.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum rubrum ATCC 11170] Length = 93 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 47/75 (62%), Gaps = 2/75 (2%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + +PV++ ++LG ++++ L+ L +G V+ L++++ E V+I N+ +A+GE+ I + Sbjct: 15 VYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITD- 73 Query: 132 DDTHFGVRVIEILNA 146 GV + E++ + Sbjct: 74 -GDKIGVTLTELVRS 87 >gi|77464888|ref|YP_354392.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1] gi|126463730|ref|YP_001044844.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] gi|77389306|gb|ABA80491.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1] gi|126105394|gb|ABN78072.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] Length = 88 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 + + + +P+++ I +G + L+ L + V+ LD+RV + V++ + ++ I +GE+ Sbjct: 4 ADQNPLTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDKLIGRGEL 63 Query: 127 TIME-EDDTHFGVRVIEILNAQ 147 T +E E VR+ E+ N + Sbjct: 64 TELEGEQAGQLAVRLTEVANLR 85 >gi|114764046|ref|ZP_01443285.1| flagellar motor switch protein FliN [Pelagibaca bermudensis HTCC2601] gi|114543404|gb|EAU46419.1| flagellar motor switch protein FliN [Roseovarius sp. HTCC2601] Length = 95 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133 +P+++ + +G + +L+ L G V+TLDKR+ + V++ + ++ I G + +++ ++ Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGAGSVLTLDKRLEDPVELYVGDRLIGIGALEVVDGGEN 78 Query: 134 THFGVRVIEILN 145 VR+ E+++ Sbjct: 79 GQLAVRLTEVVD 90 >gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] Length = 151 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKST--DNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 Q + ++ D+ N ++ +++ + I ++Q+ +G+ + + L+ Sbjct: 39 PTAQIIALPDLHAGAEGDAANQGGDASILKDWNPLHQIKARLQVCVGAVSLSVGELLGAK 98 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + V+ LD+ + VD+TI + +A+G++ ++ HF VR+ E+ Sbjct: 99 EHQVLRLDREIDHPVDLTIEGKVVARGQLVAVD---GHFAVRITEL 141 >gi|313673294|ref|YP_004051405.1| surface presentation of antigens (spoa) protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940050|gb|ADR19242.1| surface presentation of antigens (SPOA) protein [Calditerrivibrio nitroreducens DSM 19672] Length = 94 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++ + + + LG I L++ +G +I L+K GE VD+ +NN+ +A GEI +++E Sbjct: 12 DVIMDVTVELGRKLCTIGELLSWEQGTIIKLNKTSGEVVDMLVNNKPLAIGEIMVLDE-- 69 Query: 134 THFGVRVIEI 143 F R+ +I Sbjct: 70 -KFAFRLSDI 78 >gi|260574385|ref|ZP_05842389.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] gi|259023281|gb|EEW26573.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] Length = 89 Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + + +P+++ I +G Q+ +L+ L + V+ LD+RV + V++ + ++ IA+GE Sbjct: 4 AADSNPFSQVPIEITISVGKARPQVRDLLKLQRDAVLPLDRRVDDPVELYVGDRLIARGE 63 Query: 126 ITIME-EDDTHFGVRVIEILNAQ 147 + ++ + VR+ E+ N + Sbjct: 64 LQELDGDQAGQLAVRLTEVANLR 86 >gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis Ellin345] gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis Ellin345] Length = 252 Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + G M + +++ L G V+ LD+ + + V++ ++ + IA+G + +++ ++G+R Sbjct: 186 TLRFGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVVD---GNYGLR 242 Query: 140 VIEI 143 V E+ Sbjct: 243 VAEV 246 >gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] Length = 109 Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E+ + +I + + LG M + ++ L +G ++ L K GESVD+ +N +A Sbjct: 15 EELLKKLEWYGDIMFNLDVELGRIAMTLREVLELKEGSIVELKKTAGESVDVMVNQCLLA 74 Query: 123 KGEITIMEED 132 EI ++E++ Sbjct: 75 TAEIVVIEDN 84 >gi|260429524|ref|ZP_05783501.1| flagellar motor switch protein FliN [Citreicella sp. SE45] gi|260420147|gb|EEX13400.1| flagellar motor switch protein FliN [Citreicella sp. SE45] Length = 95 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133 +P+++ + +G + +L+ L +G V+TLDKR+ + V++ + ++ I G + ++E ++ Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGEGSVLTLDKRLEDPVELYVGDRLIGIGALEVLEGGEN 78 Query: 134 THFGVRVIEILNAQ 147 VR+ E+++ + Sbjct: 79 GQLAVRLTEVVDLK 92 >gi|21672366|ref|NP_660433.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008469|sp|Q8KA38|FLIN_BUCAP RecName: Full=Flagellar motor switch protein FliN gi|21622971|gb|AAM67644.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 133 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 ++ +I + + + LG ++I +L+N SKG ++ L ++ + + + NN+ IA GEI Sbjct: 53 ILFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVF-- 110 Query: 131 EDDTHFGVRVIEILNA 146 + +G+R+I I N+ Sbjct: 111 -SNNKYGIRIISINNS 125 >gi|260432139|ref|ZP_05786110.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis ITI-1157] gi|260415967|gb|EEX09226.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis ITI-1157] Length = 95 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 ++ + ++ + IP+++ + +G I +L+N+ + V+TLDKRV + VD+ + + Sbjct: 2 SDPSQTKSEKQNPFEAIPIEVTVSVGRARPLIRDLLNMGENAVLTLDKRVEDPVDLYVGD 61 Query: 119 QKIAKGEITIME-EDDTHFGVRVIEILN 145 Q +A+G + ME E VR+ EI + Sbjct: 62 QLVARGLLEEMEGEHAGQLAVRLTEISD 89 >gi|126730034|ref|ZP_01745846.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37] gi|126709414|gb|EBA08468.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37] Length = 95 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133 +P+++ + +G + L+ L++G V+ LDK++ + V++ + + I G + ++E + Sbjct: 19 VPIEITVSVGKARPLVRELLQLNEGSVLALDKQLDDPVELYVGEKLIGIGVLEVVEGDGQ 78 Query: 134 THFGVRVIEILNAQ 147 VR+ E+++ Q Sbjct: 79 GQLAVRLTEVVDLQ 92 >gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH] gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia profundicola AmH] Length = 103 Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +E+ ++ +++ V + LG + + ++ L KG VI L K GES ++ IN + I Sbjct: 11 IEEFIPDYSNLLDTEVLFESDLGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRII 70 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 KGE+ + E+ + +R+ E+L+A Sbjct: 71 GKGEVMVYEK---NLAIRLNEVLDA 92 >gi|209964576|ref|YP_002297491.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] gi|15077432|gb|AAK83160.1|AF332661_1 lateral flagellum motor switch protein FliNL [Rhodospirillum centenum] gi|209958042|gb|ACI98678.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW] Length = 103 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + ++D+D + + E I + V++ ++LG+ +++ +L+ L +G Sbjct: 1 MADQDDIDAMFGGQAEPKKADSE--LPEISAIYDTEVEVSVVLGTSTIRVRDLLKLGRGA 58 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++ LD+++ + DI ++ + + +GE+TI+E+ Sbjct: 59 IVELDRKIDDLSDIIVSGRMVGRGEVTIVEDK 90 >gi|315126004|ref|YP_004068007.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913] gi|315014518|gb|ADT67856.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913] Length = 110 Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D + + + + ++P+ + + + S + + L +GDV+ LDK GE++D+ + Sbjct: 21 DDKSANKTNEGSMSFFQDVPLLVTLEVASTEITLGELSQAKEGDVLKLDKVAGEALDVKV 80 Query: 117 NNQKIAKGEITIMEEDDTHFGVR 139 N AK E+ ++E +G++ Sbjct: 81 NGVFFAKAEVVMVE---GQYGLK 100 >gi|259418090|ref|ZP_05742009.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] gi|259346996|gb|EEW58810.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] Length = 98 Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 ++ + KS D + +++PV++ + +G I +LVNL + ++TLDK+V + VD+ + Sbjct: 3 ETGELNPKSADAGNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYV 62 Query: 117 NNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147 ++ +A+G++ ME + VR+ EI + Q Sbjct: 63 GDRLVARGQLEEMEGDQAGQLAVRLTEIADLQ 94 >gi|254511535|ref|ZP_05123602.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] gi|221535246|gb|EEE38234.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] Length = 95 Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 SD + + ++ F+ +P+++ + +G I +L+N+ + V+TLD+R+ + VD+ Sbjct: 2 SDPQSRNPEKSNPFEA---VPIEVTVSVGRARPLIRDLLNMGENAVLTLDRRIEDPVDLY 58 Query: 116 INNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147 + +Q +A+G + ME + VR+ EI + Q Sbjct: 59 VGDQLVARGLLEEMEGDQAGQLAVRLTEISDLQ 91 >gi|237800782|ref|ZP_04589243.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023640|gb|EGI03697.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 353 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 50/92 (54%), Gaps = 6/92 (6%) Query: 52 EPISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 P + D N+++ + + + DL + ++P+ + LGS + ++ L ++ G ++ L Sbjct: 259 PPYTYDRNDLMSELSTDADLDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLA 318 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + VD+ +N +++ +GE+ + + GVR+ Sbjct: 319 HDEVDLMVNGRRVGRGELVTIGDG---LGVRL 347 >gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp. SB155-2] gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp. SB155-2] Length = 83 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 50/76 (65%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 +F L+ +I +KM + LGS I +++L +GDVI L++ + +D+ +N +K+A GEI Sbjct: 10 DFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIV 69 Query: 128 IMEEDDTHFGVRVIEI 143 ++ + +GVR++++ Sbjct: 70 VIND---KYGVRIVDL 82 >gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp. TM1040] gi|99039065|gb|ABF65677.1| Flagellar motor switch protein fliN [Ruegeria sp. TM1040] Length = 98 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 ++ + K+ + + +++PV++ + +G I +LVNL + ++TLDK+V + VD+ + Sbjct: 3 ETGELNPKAAEASNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYV 62 Query: 117 NNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147 ++ +A+G++ ME + VR+ EI + Q Sbjct: 63 GDRLVARGQLEEMEGDQAGQLAVRLTEIADLQ 94 >gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411] gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411] Length = 329 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDN-ISEPISSDSNNILEKSTDNFDLI 72 ++ + +D + T + +V+ + + + ++ ++ N +LI Sbjct: 190 DIISPKIELDEIFKQQEPQEETIIEHEEVPFKEVEEELFKEAAPQASKATLEAPKNLNLI 249 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 M+I + ++I +G M I ++++L G +I LDK + E +DI +N Sbjct: 250 MDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVNG 295 >gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684] gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684] Length = 301 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 2/99 (2%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V+++S S + + D + +I V++ LG + + ++ G V+ LD+ Sbjct: 188 VEHVSGGASDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDR 247 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + + VD+ +N + A G + + ++ + +R+ E+ Sbjct: 248 KADDPVDLYVNGLRFASGTLVLTDD--GEWALRLAEVAG 284 >gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum CMR15] Length = 132 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 6/119 (5%) Query: 27 QDTNVSSP--TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 QD + P + ++ + E IS+ + + + + + + + ++ + +G Sbjct: 12 QDPGFAEPHGAQPVAQTLALGELHSTGEAISN-APLLNGATPSSANPLHRVKAQLTVCVG 70 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + + + L+ V+ LD +V + VD+ + + +A+G++ ++E HFGVR+ E+ Sbjct: 71 TATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDE---HFGVRITEL 126 >gi|89069802|ref|ZP_01157137.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516] gi|89044603|gb|EAR50719.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516] Length = 96 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI-MEEDD 133 +P+++ I++G + L+ L + V+ LD+ V + V++ + ++ IA+GE+ + Sbjct: 20 VPIEITIVVGRARPSVGELLTLDQNAVLPLDRGVDDPVELYVGDRLIARGELQEHAGGEP 79 Query: 134 THFGVRVIEI 143 VR+ E+ Sbjct: 80 GQLAVRLTEV 89 >gi|327193026|gb|EGE59938.1| flagellar motor switch protein FliN [Rhizobium etli CNPAF512] Length = 56 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 45/54 (83%) Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +NL++G I LDK++GE V+I +N ++IA+GEIT+++ DDT FGV++IE+L+ + Sbjct: 1 MNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTK 54 >gi|114798836|ref|YP_758975.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] gi|114739010|gb|ABI77135.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium ATCC 15444] Length = 99 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I ++PV + + +G + + ++ L VI L +V + VD+ I+++ IAKGE+ E Sbjct: 22 IYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDLFIDDKLIAKGELV--ET 79 Query: 132 DDTHFGVRVIEILNA 146 DD V+++EI+ Sbjct: 80 DDGQIAVKIVEIIEK 94 >gi|126734122|ref|ZP_01749869.1| surface presentation of antigens (SPOA) protein [Roseobacter sp. CCS2] gi|126716988|gb|EBA13852.1| surface presentation of antigens (SPOA) protein [Roseobacter sp. CCS2] Length = 94 Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 + +D + NIP+++ + +G + +L+ LS+ ++ LD ++ + V+I I ++ IA+ Sbjct: 6 EQSDKSHPLHNIPIEISVTVGKARPLVRDLLQLSENAILPLDSKIEDPVEIYIGDRLIAR 65 Query: 124 GEITIMEE-DDTHFGVRVIEILNAQ 147 GE+ + + VR+ E+ + + Sbjct: 66 GELQEADGAEPGQLAVRLTEVAHDK 90 >gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] Length = 95 Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 53/85 (62%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +E + +DL+++ + + ++LGS + I + ++L +GD+++LDK G DI +N++ I Sbjct: 1 MEINDRAYDLLVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRII 60 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 G+I +++E VRV + +++ Sbjct: 61 GTGDIIVIDE---KLAVRVQDAMDS 82 >gi|134300237|ref|YP_001113733.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum reducens MI-1] gi|134052937|gb|ABO50908.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum reducens MI-1] Length = 128 Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 DS + I ++ V + LG ++ ++NL G V+ ++K G+++++ I Sbjct: 34 DSFRQERIIKTSLSHIEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYI 93 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 N+ K A+GEI I+ + F VR+ I + + Sbjct: 94 NDIKAAQGEIIIVND---KFAVRINSITSPK 121 >gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342] gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342] Length = 119 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus NVH0597-99] gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus H3081.97] gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187] gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1] gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26] gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293] gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus NVH0597-99] gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus H3081.97] gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus AH187] gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1] gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293] gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26] Length = 119 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 119 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +++ K+ GE +M+E FG+ + EI Sbjct: 73 VYLSDMKVGIGEAIVMDE---KFGIIISEI 99 >gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus G9241] gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus G9241] Length = 119 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W] gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W] Length = 119 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42] gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI] gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42] gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 119 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 80 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + K + ++ + + + +G + ++ ++ L +GD+I DK++ + +D+ +N QK Sbjct: 1 MTKQDKRLEDFKDVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKF 60 Query: 122 AKGEITIMEEDDTHFGVRVIEIL 144 GE+ I+ + + +R+++++ Sbjct: 61 GIGELVIVND---KYSLRLVDLV 80 >gi|254499104|ref|ZP_05111794.1| putative surface presentation of antigens (SPOA) protein [Legionella drancourtii LLAP12] gi|254351643|gb|EET10488.1| putative surface presentation of antigens (SPOA) protein [Legionella drancourtii LLAP12] Length = 101 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 L+ +I V+ + +G+ + I+ L L G + L+++ E V+I +N + IA+GE+ Sbjct: 28 LGLVGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELM- 86 Query: 129 MEEDDTHFGVRVIEILN 145 + HF V++ EI + Sbjct: 87 --SHEDHFAVQITEIYS 101 >gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L] gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus AH820] gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201] gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L] gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus AH820] gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201] gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 119 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29] gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29] Length = 119 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|116626496|ref|YP_828652.1| surface presentation of antigens (SPOA) protein [Candidatus Solibacter usitatus Ellin6076] gi|116229658|gb|ABJ88367.1| surface presentation of antigens (SPOA) protein [Candidatus Solibacter usitatus Ellin6076] Length = 82 Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + + ++PV +++ L M +++ L +G VI + GE++DI I G Sbjct: 3 PKEEVAPLGDVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSG 62 Query: 125 EITIMEEDDTHFGVRVIE 142 EI ++E GVR+ + Sbjct: 63 EIVVIENT---LGVRITD 77 >gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Bacillus anthracis str. A2012] gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0488] gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0442] gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0193] gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0389] gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0174] gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis Tsiankovskii-I] gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. CDC 684] gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0248] gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066] gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055] gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western North America USA6153] gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B] gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum] gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia 94] gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. Ames] gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. 'Ames Ancestor'] gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis str. Sterne] gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0488] gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0193] gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0442] gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0389] gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0174] gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis Tsiankovskii-I] gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. CDC 684] gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0248] Length = 119 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G V Sbjct: 12 ELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKV 71 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 D+ ++N K+ GE +M+E FG+ + EI Sbjct: 72 DVYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|149203109|ref|ZP_01880080.1| surface presentation of antigens (SPOA) protein [Roseovarius sp. TM1035] gi|149143655|gb|EDM31691.1| surface presentation of antigens (SPOA) protein [Roseovarius sp. TM1035] Length = 98 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM-EEDD 133 +P+++ + +G I +L+ L K V+ LD+RV ++V++ + + IA+G++ + + Sbjct: 22 VPIEITVSVGKARPLIRDLLKLGKNAVLVLDRRVDDAVELYVGERLIARGQLEELAGDQQ 81 Query: 134 THFGVRVIEILNAQ 147 VRV E+ N Q Sbjct: 82 GQIAVRVTEVANLQ 95 >gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3] gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3] gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1] Length = 119 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEDFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0465] gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0465] Length = 119 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G V Sbjct: 12 ELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKV 71 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 D+ ++N K+ GE +M+E FG+ + EI Sbjct: 72 DVYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048] gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621] gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis KBAB4] gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621] gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048] Length = 119 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +++ K+ GE +M+E FG+ + EI Sbjct: 73 VYLSDMKVGIGEAIVMDE---KFGIIISEI 99 >gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB108] gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB102] gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1] gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al Hakam] gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB108] gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB102] gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1] Length = 119 Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|220926099|ref|YP_002501401.1| surface presentation of antigens (SPOA) protein [Methylobacterium nodulans ORS 2060] gi|219950706|gb|ACL61098.1| surface presentation of antigens (SPOA) protein [Methylobacterium nodulans ORS 2060] Length = 101 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 ++ ++ V + ++LG M I L+ + +G VI LD + V+I N+ IA+G+I + Sbjct: 1 MAVLEDLKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDTDMVEILANDHPIARGQIVV 60 Query: 129 MEEDDTHFGVRVIEIL 144 V V E++ Sbjct: 61 ---TGNRISVEVTELI 73 >gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803] gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803] Length = 119 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E + D + +I + + + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFARKRNEAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus AH1134] gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264] gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus G9842] gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 200] gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar sotto str. T04001] gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407] gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676] gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185] gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2] gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4] gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24] gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550] gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W] gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876] gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579] gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus AH1134] gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus B4264] gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus G9842] gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876] gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W] gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550] gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24] gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4] gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2] gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185] gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676] gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407] gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar sotto str. T04001] gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 200] gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 119 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|75763361|ref|ZP_00743099.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900346|ref|ZP_04064575.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 4222] gi|228938877|ref|ZP_04101477.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar berliner ATCC 10792] gi|229109220|ref|ZP_04238819.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15] gi|74489152|gb|EAO52630.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228674230|gb|EEL29475.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15] gi|228820726|gb|EEM66751.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859233|gb|EEN03664.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 4222] Length = 109 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 3 LEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 62 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 63 VYLSNMKVGIGEAIVMDE---KFGIIISEI 89 >gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3] gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3] Length = 119 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEDFAGKRNEMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|163732489|ref|ZP_02139934.1| flagellar motor switch protein FliN, putative [Roseobacter litoralis Och 149] gi|161393849|gb|EDQ18173.1| flagellar motor switch protein FliN, putative [Roseobacter litoralis Och 149] Length = 97 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133 +P+++ + +G I +LV L + V++LDK V + VD+ I ++ IA+G + E + Sbjct: 21 VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVDDPVDLYIGDRLIARGMLEEKEGDQS 80 Query: 134 THFGVRVIEILNAQ 147 VR+ E+++ + Sbjct: 81 GQLIVRLTEVIDLK 94 >gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271] gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271] Length = 119 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 73 VYLSNMKVGIGEAIVMDE---KFGIIISEI 99 >gi|328543417|ref|YP_004303526.1| surface presentation of antigens protein [polymorphum gilvum SL003B-26A1] gi|326413162|gb|ADZ70225.1| Putative surface presentation of antigens protein [Polymorphum gilvum SL003B-26A1] Length = 88 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 I V + ++LG+ M + L+ + +G VI LD + V I NN +AKG++ ++ E Sbjct: 7 ISVDISVVLGTTEMPVHQLLRMGRGAVIDLDVAEEDDVKIFANNTLVAKGQVVLLGE--- 63 Query: 135 HFGVRVIEIL 144 GV + E+L Sbjct: 64 RIGVSITEVL 73 >gi|229058413|ref|ZP_04196797.1| Flagellar motor switch protein FliN [Bacillus cereus AH603] gi|228719922|gb|EEL71512.1| Flagellar motor switch protein FliN [Bacillus cereus AH603] Length = 119 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E + D + +I +++ + LG +Q+ ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIQLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +++ K+ GE +M+E FG+ + EI Sbjct: 73 VYLSDMKVGIGEAIVMDE---KFGIIISEI 99 >gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 101 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + D + E + ++ + +LI ++ V++ + LG M + L L GD Sbjct: 1 MTATVDAIELEEARVAVNDGQSPLIKRDMNLIKHVVVELVVQLGHASMSVDELFALKAGD 60 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 V+ L ++V E + ++ + +A+G + +++ +FG+++ EIL Sbjct: 61 VVKLLEQVHEPASLCLDGKPVARGNLVAVDD---NFGIQLTEIL 101 >gi|229132592|ref|ZP_04261440.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196] gi|228650824|gb|EEL06811.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196] Length = 119 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E + D + +I +++ + LG +++ ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIKLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +++ K+ GE +M+E FG+ + EI Sbjct: 73 VYLSDMKVGIGEAIVMDE---KFGIIISEI 99 >gi|229102363|ref|ZP_04233071.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28] gi|228681010|gb|EEL35179.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28] Length = 109 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E S + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 3 LEDFAGKRNEVSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 62 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + ++N K+ GE +M+E FG+ + EI Sbjct: 63 VYLSNMKVGIGEAIVMDE---KFGIIISEI 89 >gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273] gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272] gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272] gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273] Length = 119 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + + E + D + +I +++ + LG + + ++ L GDV+ ++K +G VD Sbjct: 13 LEEFAGGRNEAEKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +++ K+ GE T+M+E FG+ + EI Sbjct: 73 VYLSDIKVGIGEATVMDE---KFGIIISEI 99 >gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10] gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris MCS10] Length = 99 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + I ++ V++ ++LG M I + + +G VI LD + V I NN IA+G++ Sbjct: 17 DVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVV 76 Query: 128 IMEEDDTHFGVRVI 141 I + V + Sbjct: 77 IQGD---RIAVSIT 87 >gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] Length = 309 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 ++ I +++ + L S M++ + L G +I DK ES+D+ + +IA+GE + + Sbjct: 224 LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGD 283 Query: 132 DDTHFGVRVIEILNAQ 147 FG+RV +L + Sbjct: 284 ---KFGMRVTNVLLPE 296 >gi|307946346|ref|ZP_07661681.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4] gi|307770010|gb|EFO29236.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4] Length = 88 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + +I V + ++LG M I L+ + +G VI LD + V+I N +A G++ + Sbjct: 1 MTTLDDIFVDISVVLGKSEMPIHQLLRMGRGAVIDLDVSEDDDVEIYANKTLVATGQVVL 60 Query: 129 MEEDDTHFGVRVIEIL 144 + E G+ V E+L Sbjct: 61 LGE---RIGISVTEVL 73 >gi|110677671|ref|YP_680678.1| flagellar motor switch protein FliN, putative [Roseobacter denitrificans OCh 114] gi|109453787|gb|ABG29992.1| flagellar motor switch protein FliN, putative [Roseobacter denitrificans OCh 114] Length = 97 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD- 133 +P+++ + +G I +LV L + V++LDK V + VD+ I ++ IA+G + ++D Sbjct: 21 VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVEDPVDLYIGDRLIARGMLEEKDDDQS 80 Query: 134 THFGVRVIEILNAQ 147 VR+ E+++ + Sbjct: 81 GQLIVRLTEVIDLK 94 >gi|85706152|ref|ZP_01037247.1| flagellar motor switch protein FliN [Roseovarius sp. 217] gi|85669316|gb|EAQ24182.1| flagellar motor switch protein FliN [Roseovarius sp. 217] Length = 100 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDD 133 +P+++ + +G I +L+ L K V+ LD+RV + V++ + + +A+G + ++ + Sbjct: 23 VPIEITVSVGKARPSIRDLLKLGKNAVLVLDRRVDDMVELYVGERLVARGRLEELDGDQQ 82 Query: 134 THFGVRVIEILNAQ 147 VRV E+ N Q Sbjct: 83 GQIAVRVTEVANLQ 96 >gi|170750204|ref|YP_001756464.1| surface presentation of antigens (SPOA) protein [Methylobacterium radiotolerans JCM 2831] gi|170656726|gb|ACB25781.1| surface presentation of antigens (SPOA) protein [Methylobacterium radiotolerans JCM 2831] Length = 122 Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + V + ++LG M + L+ + +G VI L+ + V+I N+ IA+G+I + + Sbjct: 28 LKVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILANDHPIARGQIVVTGD--- 84 Query: 135 HFGVRVIEIL 144 V V E++ Sbjct: 85 RISVEVTELI 94 >gi|225850265|ref|YP_002730499.1| flagellar motor switch phosphatase FliY [Persephonella marina EX-H1] gi|225646313|gb|ACO04499.1| flagellar motor switch phosphatase FliY [Persephonella marina EX-H1] Length = 79 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + ++ VK+ +G ++ L +GD+I LDK + + V++ + +Q A GE+ Sbjct: 6 DISFLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELI 65 Query: 128 IMEEDDTHFGVRVIEI 143 + E +G+RV+++ Sbjct: 66 VANE---KYGIRVVDL 78 >gi|152975143|ref|YP_001374660.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023895|gb|ABS21665.1| CheC, inhibitor of MCP methylation [Bacillus cytotoxicus NVH 391-98] Length = 554 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 7/106 (6%) Query: 40 MLIQKNDVDNISEPISSDSN----NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 I++ +V+ I EP + E + ++ N+ + ++ + GS I ++++ Sbjct: 449 ASIKEENVEEIPEPAVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILS 508 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 L + D + LD+ V E + I +NN +A GE+ ++ FGV+V Sbjct: 509 LHENDAVVLDEEVDEPIRIYVNNVLVAYGELVNVD---GFFGVKVT 551 >gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803] gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803] Length = 547 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ Sbjct: 453 VAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + E + I +N+ +A GE+ ++ FGV+V Sbjct: 513 DIDEPIQIYVNDVLVAYGELVNVD---GFFGVKVT 544 >gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium sp. 4-46] gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium sp. 4-46] Length = 101 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 ++ + V + ++LG M I L+ + +G VI LD + VDI N+ IA+G+I + Sbjct: 1 MAVLEELKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVV 60 Query: 129 MEEDDTHFGVRVIEIL 144 V V E++ Sbjct: 61 ---TGNRISVEVTELI 73 >gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018] gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22] gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018] gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22] Length = 95 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +E S +DL+++ + + ++LGS + + + L++GD+I+L K G +I +N++ I Sbjct: 1 MEISERVYDLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRII 60 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 G+I +++E VRV + +++ Sbjct: 61 GTGDIIVIDE---KLAVRVQDAMDS 82 >gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1] gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1] Length = 108 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 P+ + L S + + + V++Q++LG + + L+ + +G VI LD V E V Sbjct: 10 PLRAKPLVPLAWSDPSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEV 69 Query: 113 DITINNQKIAKGEITIMEED 132 I NN +A+GEI I ++ Sbjct: 70 WILANNHPVARGEIQISDDK 89 >gi|227820524|ref|YP_002824495.1| type III secretion system translocation protein, RhcQ [Sinorhizobium fredii NGR234] gi|227339523|gb|ACP23742.1| type III secretion system translocation protein, RhcQ [Sinorhizobium fredii NGR234] Length = 351 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 3/86 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + S+ + + ++P+++ +G + + + +G V+ + V I Sbjct: 263 SAMSKQQPPSSGELEPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPSLSSPVSIL 322 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVI 141 N + + KGE+ + E G+RV+ Sbjct: 323 ANGRLVGKGELIRIGEG---LGIRVV 345 >gi|118591116|ref|ZP_01548515.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614] gi|118436192|gb|EAV42834.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614] Length = 88 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 I V + ++LG M + L+ + +G VI LD E V I NN +AKG++ ++ E Sbjct: 7 IKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGE--- 63 Query: 135 HFGVRVIEIL 144 G+ + E+L Sbjct: 64 RIGISITEVL 73 >gi|159045806|ref|YP_001534600.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12] gi|157913566|gb|ABV94999.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12] Length = 89 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 ++ +P+ + + +G + L+ L K V+ LDKR+ + V++ + IA+G + Sbjct: 10 SPLVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARG-VLEE 68 Query: 130 EEDDTHFGVRVIEILNAQ 147 + D VR+ E+++ + Sbjct: 69 DADSHRLSVRLTEVISPE 86 >gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus DSM 13965] gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus DSM 13965] Length = 321 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + + +P+ +Q++LG + + L++L+ G V+ LD R G VDI + + +G Sbjct: 231 EGLRQVPLPVQVVLGRAQLTVRQLLDLAPGHVLPLDTRAGSLVDILVGGRLKFRG 285 >gi|317121825|ref|YP_004101828.1| flagellar motor switch protein FliM [Thermaerobacter marianensis DSM 12885] gi|315591805|gb|ADU51101.1| flagellar motor switch protein FliM [Thermaerobacter marianensis DSM 12885] Length = 322 Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 + + ++P+ + ++LG + + L+ L G V+ LD R G VD+ + + +G + Sbjct: 231 EGLRHVPLPVTVVLGRTRLTVRELLALEPGQVLRLDTRAGGLVDVLVAGRPKFRG---LP 287 Query: 130 EEDDTHFGVRVIEILNAQ 147 V+V+E + + Sbjct: 288 GRAGPRLAVQVVERVAEE 305 >gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 105 Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + + + V++ ++LG + I + + +G VI LD + V I NN IA+GE Sbjct: 22 AHSMSQLGAVQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAAEHDEVWILANNHPIARGE 81 Query: 126 ITIMEEDDTHFGVRVIE 142 I I + V + + Sbjct: 82 IIIQGD---RVAVSITD 95 >gi|168699680|ref|ZP_02731957.1| hypothetical protein GobsU_09164 [Gemmata obscuriglobus UQM 2246] Length = 117 Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 ++PT+ ++ + + + + ++P+ + LG + I Sbjct: 4 TTPTDPADPGVVARQAE-----FPRLEPRAGTGPGSTLESLRDVPITITARLGRAVLPIG 58 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ L G V+ L++ + V++T+ A + HF VR+ +L Sbjct: 59 EILTLGPGSVVELEEVISAPVELTVRGVPFAV---GEVVVVGEHFAVRIKNLLPP 110 >gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 4222] gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 4222] Length = 544 Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 452 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 511 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 512 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 541 >gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842] gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842] Length = 545 Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542 >gi|330963707|gb|EGH63967.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 356 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 65 STDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ++ + D + ++P+ + LG+ + ++ L ++ G ++ L + VD+ +N ++I + Sbjct: 277 ASPDLDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGR 336 Query: 124 GEITIMEEDDTHFGVRV 140 G++ + + GVR+ Sbjct: 337 GQLVSIGDG---LGVRL 350 Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK--IAK--GE 125 D ++ + ++M + G + S L +L GDV+ LD V + + + +A+ GE Sbjct: 187 DPLVAVRLQMSVEAGQAPLNTSELRSLVPGDVVMLDTLPDAQVQLRLGSHCQTVARRQGE 246 >gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200] gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200] Length = 545 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542 >gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1] Length = 545 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 ++PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 455 AQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDE 514 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 515 PIRIYVNDVLVAYGELVNVD---GFFGVKVT 542 >gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar sotto str. T04001] gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar sotto str. T04001] Length = 545 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542 >gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407] gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407] gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 545 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542 >gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676] gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185] gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W] gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876] gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876] gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W] gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185] gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676] Length = 545 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 513 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 542 >gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 544 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 452 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 511 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 512 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 541 >gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 546 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134] gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134] Length = 545 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 453 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 512 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ + FGV+V Sbjct: 513 DEPIRIYVNDVLVAYGELVNVN---GFFGVKVT 542 >gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342] gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342] Length = 547 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 514 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 515 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544 >gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3] gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3] Length = 547 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 455 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 514 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 515 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544 >gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2] gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2] gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 546 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|163738044|ref|ZP_02145460.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] gi|163742560|ref|ZP_02149946.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis 2.10] gi|161384145|gb|EDQ08528.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis 2.10] gi|161388660|gb|EDQ13013.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] Length = 98 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142 G I +LVNL + ++TLDKRV + VD+ + ++ +A+G++ ME E VR+ E Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89 Query: 143 ILNAQ 147 I + Q Sbjct: 90 IADLQ 94 >gi|330876195|gb|EGH10344.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 356 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 65 STDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ++ + D + ++P+ + LG+ + ++ L ++ G ++ L + VD+ +N ++I + Sbjct: 277 ASPDLDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGR 336 Query: 124 GEITIMEEDDTHFGVRV 140 G++ + + GVR+ Sbjct: 337 GQLVSIGDG---LGVRL 350 Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAK--GE 125 D ++ + +++ + G + S L +L GDV+ LD V + + + Q +A+ GE Sbjct: 187 DPLVAVRLQLSVEAGQAPLNTSELRSLVPGDVVMLDTLPDAQVQLRLGSHCQTVARRQGE 246 >gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24] gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24] Length = 546 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15] gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15] Length = 546 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pakistani str. T13001] Length = 546 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ + FGV+V Sbjct: 514 DEPIRIYVNDVLVAYGELVNVN---GFFGVKVT 543 >gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264] gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264] gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] Length = 546 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550] gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550] Length = 546 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4] gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579] gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4] Length = 546 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 454 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 513 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 514 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] Length = 546 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 546 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1] gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1] Length = 546 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108] gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108] Length = 547 Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 518 IRIYVNDVLVAYGELVNVD---GFFGVKVT 544 >gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 547 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 518 IRIYVNDVLVAYGELVNVD---GFFGVKVT 544 >gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271] gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271] Length = 548 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 459 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 518 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 519 IRIYVNDVLVAYGELVNVD---GFFGVKVT 545 >gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196] gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196] Length = 548 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ Sbjct: 455 APVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDED 514 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + E + I +N+ +A GE+ ++ FGV++ Sbjct: 515 IDEPIQIYVNDVLVAYGELVNVD---GFFGVKMT 545 >gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621] gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis KBAB4] gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621] Length = 548 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ Sbjct: 455 APVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDED 514 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + E + I +N+ +A GE+ ++ FGV+V Sbjct: 515 IDEPIQIYVNDVLVAYGELVNVD---GFFGVKVT 545 >gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187] gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26] gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187] gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26] Length = 546 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97] gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97] Length = 546 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus NVH0597-99] gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI] gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus NVH0597-99] gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 546 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102] gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1] gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam] gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102] gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1] Length = 547 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 458 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 517 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 518 IRIYVNDVLVAYGELVNVD---GFFGVKVT 544 >gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42] gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42] Length = 546 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L] gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation [Bacillus anthracis str. A2012] gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis Tsiankovskii-I] gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W] gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str. CDC 684] gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str. A0248] gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066] gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055] gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western North America USA6153] gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B] gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum] gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str. Sterne] gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L] gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis Tsiankovskii-I] gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W] gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str. CDC 684] gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str. A0248] Length = 546 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29] gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3] gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3] gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29] Length = 547 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ Sbjct: 453 AAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + E + I +N+ +A GE+ ++ FGV+V Sbjct: 513 DIDEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544 >gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241] gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241] Length = 546 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia 94] Length = 546 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293] gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293] Length = 546 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQIEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|218672164|ref|ZP_03521833.1| flagellar motor switch protein [Rhizobium etli GR56] Length = 142 Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D+P + S + + T NF++IM+IP+ +QI+ Sbjct: 54 DSPFGGDDFGGDFGAGNASPAAGMDFGGSSSFEASPAPLGSALTSNFEMIMDIPIDVQIM 113 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGES 111 LG+ MQ+S L+NL++G I LDK++GE Sbjct: 114 LGTSRMQVSGLMNLNEGATIALDKKIGEP 142 >gi|254475007|ref|ZP_05088393.1| Surface presentation of antigens protein [Ruegeria sp. R11] gi|214029250|gb|EEB70085.1| Surface presentation of antigens protein [Ruegeria sp. R11] Length = 98 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142 G I +LVNL + ++TLDKRV + VD+ + ++ +A+G++ ME E VR+ E Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89 Query: 143 ILNAQ 147 I + Q Sbjct: 90 IADLQ 94 >gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603] gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603] Length = 548 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ Sbjct: 455 APVVQPIEYKEVKQVEPVYMDASILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDED 514 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + E + I +N+ +A GE+ ++ FGV+V Sbjct: 515 IDEPIQIYVNDVLVAYGELVNVD---GFFGVKVT 545 >gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 546 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273] gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272] gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272] gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273] Length = 548 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 459 QPIEYQEVKQVEPVYMDASILKNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEP 518 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 519 IQIYVNDVLVAYGELVNVD---GFFGVKVT 545 >gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820] gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201] gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820] gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201] gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 546 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + E Sbjct: 457 QPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEP 516 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + I +N+ +A GE+ ++ FGV+V Sbjct: 517 IRIYVNDVLVAYGELVNVD---GFFGVKVT 543 >gi|304321126|ref|YP_003854769.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis HTCC2503] gi|303300028|gb|ADM09627.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis HTCC2503] Length = 90 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 37/81 (45%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 N + +I + + +++G M + L + V+ L R E V++ ++ Q IA Sbjct: 4 SAKAQNKQPLYDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVVDGQVIA 63 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE+ + +R++++ Sbjct: 64 TGELCEGDTGPESLALRILDL 84 >gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces limnophilus DSM 3776] gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces limnophilus DSM 3776] Length = 396 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 10/137 (7%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN--- 68 + + S P T V+ + + L+ + +P+ S + E Sbjct: 248 TERRQNSSAERQLPDSQTAVAPVDSPVDDLLSNYEGLAAQDPMESAAPLAQETMPQQSVT 307 Query: 69 ----FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + + V++ + L M ++ L+ LS G ++T K + +DI I N++ A+G Sbjct: 308 SQLMLQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQG 367 Query: 125 EITIMEEDDTHFGVRVI 141 E + E HFGV+V Sbjct: 368 EAVKIGE---HFGVKVN 381 >gi|255654316|ref|ZP_05399725.1| flagellar motor switch protein [Clostridium difficile QCD-23m63] gi|296452606|ref|ZP_06894300.1| flagellar motor switch protein [Clostridium difficile NAP08] gi|296880982|ref|ZP_06904928.1| flagellar motor switch protein [Clostridium difficile NAP07] gi|296258567|gb|EFH05468.1| flagellar motor switch protein [Clostridium difficile NAP08] gi|296428003|gb|EFH13904.1| flagellar motor switch protein [Clostridium difficile NAP07] Length = 104 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + N V + + +G+ I N+++L +G +I L+K V E +DI N++ A GE I E Sbjct: 30 VFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESIITNE 89 Query: 132 DDTHFGVRVIEILNA 146 VR+ +I ++ Sbjct: 90 ---KLSVRLSKIEDS 101 >gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus cytotoxicus NVH 391-98] Length = 119 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 E++ + D + +I +++ + LG +Q+ ++ NL GDV+ ++K +G VD+ +++ Sbjct: 19 QREEQAKAHIDTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEVEKNLGHKVDVYLSDI 78 Query: 120 KIAKGEITIMEEDDTHFGVRVIEI 143 K+ GE +M+E FG+ + EI Sbjct: 79 KVGIGEAIVMDE---QFGIIISEI 99 >gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28] gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28] Length = 547 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ Sbjct: 453 AAPVVQPIEFKEVKQIEPVYIDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDE 512 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + E + I +N+ +A GE+ ++ FGV+V Sbjct: 513 DIDEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 544 >gi|254470456|ref|ZP_05083860.1| putative surface presentation of antigens protein [Pseudovibrio sp. JE062] gi|211960767|gb|EEA95963.1| putative surface presentation of antigens protein [Pseudovibrio sp. JE062] Length = 88 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +I V + ++LG M + L+ + +G VI LD + V I NN +A+G++T++ + Sbjct: 6 DISVDISVVLGKSEMPVHQLLRMGRGAVIELDTHEADDVTILANNTPVAEGQVTVVGD-- 63 Query: 134 THFGVRVIEIL 144 G+ + ++L Sbjct: 64 -KVGIVITKVL 73 >gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 318 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +PI +E + ++ N+ + ++ + GS I ++++L + + + LD+ + Sbjct: 226 PVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDI 285 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 E + I +N+ +A GE+ ++ FGV+V Sbjct: 286 DEPIRIYVNDVLVAYGELVNVD---GFFGVKVT 315 >gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] Length = 331 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + N+ +++ +G + + ++L GDVI LDK + VD+ + ++ KG IM + Sbjct: 254 LENVNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEVDVYVYDKLKYKG---IMGK 310 Query: 132 DDTHFGVRVIEILNAQ 147 + F VR+ ++++ + Sbjct: 311 RNGRFAVRINKVISER 326 >gi|13475304|ref|NP_106868.1| translocation protein in type III secretion system, hrcQ [Mesorhizobium loti MAFF303099] gi|14026055|dbj|BAB52654.1| translocation protein in type III secretion system; HrcQ [Mesorhizobium loti MAFF303099] Length = 354 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 3/109 (2%) Query: 32 SSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQIS 91 +S + L+ S + + L + + ++ + + G + + Sbjct: 241 ASADLEGDQLVLHGPFRPRSYSLENAHMTQLGSQLGPTEDLDDVEIMLVFECGRWPIPLG 300 Query: 92 NLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 L + +G + L + + + VDI N Q I +G+I + + G+R+ Sbjct: 301 ELRSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRIGDT---LGIRL 346 >gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 351 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333 Query: 126 ITIMEEDDTHFGVRV 140 + + + GVR+ Sbjct: 334 LVSIGDG---LGVRL 345 Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81 ++NPL+ P ++ + + ++ + + + D ++ + + + Sbjct: 137 LENPLRLALEVRPDEGQAQTLEIHLNADSAQHVIALLDRNAVTRPQPLDALV---LTLSV 193 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 G + + L +L GDV+ LD V Sbjct: 194 EAGQAPLTTAELHSLVPGDVVMLDTLADTQV 224 >gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 351 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333 Query: 126 ITIMEEDDTHFGVRV 140 + + + GVR+ Sbjct: 334 LVSIGDG---LGVRL 345 >gi|149177723|ref|ZP_01856323.1| probable flagellar motor switch protein fliN [Planctomyces maris DSM 8797] gi|148843373|gb|EDL57736.1| probable flagellar motor switch protein fliN [Planctomyces maris DSM 8797] Length = 295 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIIL 83 PL V+ + + + S N + I +PV+ + L Sbjct: 166 PLTKPPVTESVEPEADPAPQPSPSSTPQATPQMVQATPANSNRNPLNRISKLPVQAIVKL 225 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 S ++++ L+++ G +IT DK + +++ INNQ GE + E HFG+++ Sbjct: 226 ASKKIEMNQLLSICPGSLITFDKPCEDPLELYINNQVYCLGEAVKIGE---HFGLKI 279 >gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 351 Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333 Query: 126 ITIMEEDDTHFGVRV 140 + + + GVR+ Sbjct: 334 LVSIGDG---LGVRL 345 Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81 ++NPL+ P ++ + + ++ + + + D ++ + + + Sbjct: 137 LENPLRLALEVRPDEGQAQTLEIHLNADSAQHVIALLDRNAVTRPQPLDALV---LTLSV 193 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 G + + L +L GDV+ LD V Sbjct: 194 EAGQAPLTTAELHSLVPGDVVMLDTLADTQV 224 >gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 344 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE Sbjct: 267 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 326 Query: 126 ITIMEEDDTHFGVRV 140 + + + GVR+ Sbjct: 327 LVSIGDG---LGVRL 338 >gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 351 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE Sbjct: 274 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 333 Query: 126 ITIMEEDDTHFGVRV 140 + + + GVR+ Sbjct: 334 LVSIGDG---LGVRL 345 Score = 34.1 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + + + G + + L +L GDV+ LD V Sbjct: 189 LTLSVEAGQAPLTTAELHSLVPGDVVMLDTLADTQV 224 >gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15] gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000] gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15] gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000] Length = 103 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I ++ Sbjct: 27 VNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQISDD--- 83 Query: 135 HFGVRVI 141 ++V Sbjct: 84 RIAIQVT 90 >gi|255099392|ref|ZP_05328369.1| flagellar motor switch protein [Clostridium difficile QCD-63q42] Length = 104 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + N V + + +G+ I N+++L +G +I L K V E +DI N++ A GE I E Sbjct: 30 VFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESIITNE 89 Query: 132 DDTHFGVRVIEILNA 146 VR+ +I + Sbjct: 90 ---RLSVRLSKIEDP 101 >gi|283780013|ref|YP_003370768.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi DSM 6068] gi|283438466|gb|ADB16908.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi DSM 6068] Length = 329 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 S P S + + K I+ I V +++ L + + + +V L G +I +K Sbjct: 218 ASPPPSDNVEERIYKLPPYTRSILRIEVPVRVTLATTQLPLKRIVELGPGSIIQFEKPCD 277 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + + ++A GE + E FG+R+ ++ Sbjct: 278 SELSLQVGEHEVAIGEAVKVGE---KFGLRLTSMVMP 311 >gi|254465587|ref|ZP_05078998.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] gi|206686495|gb|EDZ46977.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] Length = 98 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142 G I +LV+L + ++TLDKRV + VD+ + ++ +A+G++ +E E VR+ E Sbjct: 30 GKARPLIRDLVSLGENAILTLDKRVEDPVDLYVGDRLVARGQLEELEGEQAGQLAVRLTE 89 Query: 143 ILNAQ 147 I + Q Sbjct: 90 IADLQ 94 >gi|126738562|ref|ZP_01754267.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6] gi|126720361|gb|EBA17067.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6] Length = 98 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIE 142 G I +LV L + ++TLDKRV + VD+ + ++ +A+G++ M+ E VR+ E Sbjct: 30 GKARPLIRDLVGLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMDGEQAGQLAVRLTE 89 Query: 143 ILNAQ 147 I + Q Sbjct: 90 IADLQ 94 >gi|328468942|gb|EGF39902.1| type III secretion system protein [Vibrio parahaemolyticus 10329] Length = 321 Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV++ +G + + L L G V L++ V + V + N + I + E+ + + Sbjct: 247 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 304 Query: 134 THFGVRVIEILN 145 H GVRV+E+ Sbjct: 305 -HLGVRVLELFG 315 >gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 301 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE Sbjct: 224 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 283 Query: 126 ITIMEEDDTHFGVRV 140 + + + GVR+ Sbjct: 284 LVSIGDG---LGVRL 295 Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + + + G + + L +L GDV+ LD V Sbjct: 139 LTLSVEAGQAPLTTAELHSLVPGDVVMLDTLADTQV 174 >gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 301 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 67 DNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 + D ++ +P+ + LGS + ++ L ++ G ++ L + VD+ +N ++I +GE Sbjct: 224 SDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGE 283 Query: 126 ITIMEEDDTHFGVRV 140 + + + GVR+ Sbjct: 284 LVSIGDG---LGVRL 295 >gi|28898445|ref|NP_798050.1| type III secretion system protein [Vibrio parahaemolyticus RIMD 2210633] gi|28806662|dbj|BAC59934.1| putative translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] Length = 328 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV++ +G + + L L G V L++ V + V + N + I + E+ + + Sbjct: 254 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 311 Query: 134 THFGVRVIEILN 145 H GVRV+E+ Sbjct: 312 -HLGVRVLELFG 322 >gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter proteolyticus DSM 5265] gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter proteolyticus DSM 5265] Length = 326 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 +S+P D L ++I +I V++ +LG + I ++ + GDVI L +R Sbjct: 231 GVSKPTPDDWKTTL------MEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSRRS 284 Query: 109 GESVDITINNQKIAKG 124 E VD+ + AKG Sbjct: 285 DEEVDLLVEGNLFAKG 300 >gi|260365111|ref|ZP_05777682.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus K5030] gi|260876606|ref|ZP_05888961.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AN-5034] gi|260895033|ref|ZP_05903529.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus Peru-466] gi|260900956|ref|ZP_05909351.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ4037] gi|308086011|gb|EFO35706.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus Peru-466] gi|308093588|gb|EFO43283.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AN-5034] gi|308110725|gb|EFO48265.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ4037] gi|308111696|gb|EFO49236.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus K5030] Length = 321 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV++ +G + + L L G V L++ V + V + N + I + E+ + + Sbjct: 247 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 304 Query: 134 THFGVRVIEILN 145 H GVRV+E+ Sbjct: 305 -HLGVRVLELFG 315 >gi|153836164|ref|ZP_01988831.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ3810] gi|149750439|gb|EDM61184.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ3810] Length = 321 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV++ +G + + L L G V L++ V + V + N + I + E+ + + Sbjct: 247 QLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVND-- 304 Query: 134 THFGVRVIEILN 145 H GVRV+E+ Sbjct: 305 -HLGVRVLELFG 315 >gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum lavamentivorans DS-1] gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum lavamentivorans DS-1] Length = 78 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + + N+ V++ ++LG M I L+ + +G VI L R E + + NN IA+GEI + Sbjct: 1 MNSVNNVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIV 60 Query: 129 MEEDDTHFGVRVIEIL 144 E V + +L Sbjct: 61 QGE---RVAVSITTVL 73 >gi|254228244|ref|ZP_04921673.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp. Ex25] gi|262394134|ref|YP_003285988.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25] gi|151939317|gb|EDN58146.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp. Ex25] gi|262337728|gb|ACY51523.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25] Length = 322 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV++ +G + + L L G V L++ V + V + N + I + E+ + E Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNE-- 305 Query: 134 THFGVRVIEILN 145 H GVRV+E+ Sbjct: 306 -HLGVRVLELFG 316 >gi|254973889|ref|ZP_05270361.1| flagellar motor switch protein [Clostridium difficile QCD-66c26] gi|255091274|ref|ZP_05320752.1| flagellar motor switch protein [Clostridium difficile CIP 107932] gi|255305249|ref|ZP_05349421.1| flagellar motor switch protein [Clostridium difficile ATCC 43255] gi|255312933|ref|ZP_05354516.1| flagellar motor switch protein [Clostridium difficile QCD-76w55] gi|255515692|ref|ZP_05383368.1| flagellar motor switch protein [Clostridium difficile QCD-97b34] gi|255648786|ref|ZP_05395688.1| flagellar motor switch protein [Clostridium difficile QCD-37x79] gi|260682006|ref|YP_003213291.1| flagellar motor switch protein [Clostridium difficile CD196] gi|260685604|ref|YP_003216737.1| flagellar motor switch protein [Clostridium difficile R20291] gi|306518903|ref|ZP_07405250.1| flagellar motor switch protein [Clostridium difficile QCD-32g58] gi|260208169|emb|CBA60487.1| flagellar motor switch protein [Clostridium difficile CD196] gi|260211620|emb|CBE01855.1| flagellar motor switch protein [Clostridium difficile R20291] Length = 104 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + N V + + +G+ I N+++L +G +I L K V E +DI N++ A GE I E Sbjct: 30 VFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESIITNE 89 Query: 132 DDTHFGVRVIEILNA 146 VR+ +I ++ Sbjct: 90 ---KLSVRLSKIEDS 101 >gi|91224471|ref|ZP_01259733.1| type III secretion protein [Vibrio alginolyticus 12G01] gi|91190813|gb|EAS77080.1| type III secretion protein [Vibrio alginolyticus 12G01] Length = 322 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV++ +G + + L L G V L++ V + V + N + I + E+ + E Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNE-- 305 Query: 134 THFGVRVIEILN 145 H GVRV+E+ Sbjct: 306 -HLGVRVLELFG 316 >gi|262284526|gb|ACY41063.1| VscQ [Vibrio alginolyticus] Length = 322 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV++ +G + + L L G V L++ V + V + N + I + E+ + E Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNE-- 305 Query: 134 THFGVRVIEILN 145 H GVRV+E+ Sbjct: 306 -HLGVRVLELFG 316 >gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] Length = 165 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 ++ EP + + + ++ + +IP+ + + +G M + L++L G+ I LD Sbjct: 70 PIEESEEPALAAAQIVPDEEKLSAISPNDIPLSIILEVGRLKMSMQTLMDLQPGNTIELD 129 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 R +D+ +N ++AKGE+ + E + G+R++E+ Sbjct: 130 IRPESGIDLVVNGSRVAKGELLQVGE---NLGIRILEL 164 >gi|254418697|ref|ZP_05032421.1| Surface presentation of antigens protein, putative [Brevundimonas sp. BAL3] gi|196184874|gb|EDX79850.1| Surface presentation of antigens protein, putative [Brevundimonas sp. BAL3] Length = 83 Score = 61.4 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + V++ ++LG + +S L+ + +G VI LD G+ V I NN +A+GE +E D Sbjct: 7 VDVEISVVLGRMVLPMSQLLRMGRGAVIPLDASEGDEVWILANNHPVARGE---IEIRDD 63 Query: 135 HFGVRVI 141 + V Sbjct: 64 RIAITVT 70 >gi|83646772|ref|YP_435207.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] gi|83634815|gb|ABC30782.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396] Length = 111 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V+ + ++ + +D DL+ N+ V + + LG + ++ L L+ V+ ++K Sbjct: 16 VEEVILEPMNEGGAGDKLKSDPLDLVKNVKVTLDVYLGDANLTVAELTALTSESVVKMNK 75 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 ++ + +++ ++ + +A+G++ +++ FG+++ E Sbjct: 76 QLNDPIELLLDGKVVARGKLVAVDDV---FGIQITE 108 >gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus JW 200] gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus JW 200] Length = 332 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + LGS + + + L GD+I LDK E VDI I+ + +G I + + Sbjct: 260 IPLTAQLGSTTITVKEFLELEIGDIIMLDKHFKEPVDIIIDKKVKFRG---IPGIKNNKY 316 Query: 137 GVRVIEIL 144 VR+ E++ Sbjct: 317 SVRITEVI 324 >gi|119385378|ref|YP_916434.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] gi|119375145|gb|ABL70738.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] Length = 85 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 39/67 (58%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 I V++ I LG + ++ L L D++TLD+ + + V+I + ++ IA+GE+ +E D Sbjct: 12 QIQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVSGDETD 71 Query: 134 THFGVRV 140 VR+ Sbjct: 72 NRLCVRI 78 >gi|1648935|gb|AAB17683.1| putative [Sinorhizobium fredii] gi|19749327|gb|AAL98697.1| Y4yK [Sinorhizobium fredii] gi|52631920|gb|AAU85370.1| RhcQ [Sinorhizobium fredii] Length = 382 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 10/113 (8%) Query: 32 SSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 + + L+ + S P+ +++ + L S + D +I + + G Sbjct: 268 TRADLEGDHLVLRGPFRPQSRPLEYAHMTETESQLRPSDADLD---DIEIVLVFECGRWP 324 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + + +L + G V L + + VDI N + I +G+I + ++ G+R+ Sbjct: 325 ISLGDLRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDE---LGIRL 374 >gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis ATCC 21756] gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis ATCC 21756] Length = 83 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I ++ Sbjct: 7 VNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQISDD--- 63 Query: 135 HFGVRVI 141 ++V Sbjct: 64 RIAIQVT 70 >gi|325107429|ref|YP_004268497.1| surface presentation of antigens (SPOA) protein [Planctomyces brasiliensis DSM 5305] gi|324967697|gb|ADY58475.1| surface presentation of antigens (SPOA) protein [Planctomyces brasiliensis DSM 5305] Length = 295 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +MN+ VK+ + L +++S L+NL G ++ K + +D+ +NN+ A+GE + E Sbjct: 214 LMNLNVKVSVRLAEMKIELSTLINLCPGTLLVFPKSCDDLLDLYVNNRLYAQGEAVKIGE 273 Query: 132 DDTHFGVRVIEI 143 FG++V EI Sbjct: 274 ---KFGLKVNEI 282 >gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31] gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp. K31] Length = 83 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + V++ ++LG + + L+ + +G VI LD + + V I NN IA+GEI I ++ Sbjct: 7 VNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQISDD--- 63 Query: 135 HFGVRVI 141 ++V Sbjct: 64 RIAIQVT 70 >gi|307264879|ref|ZP_07546441.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii Rt8.B1] gi|306920137|gb|EFN50349.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii Rt8.B1] Length = 332 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + LGS + + + GD+I LDK E VDI I+ + +G I + + Sbjct: 260 IPLTAQLGSTTITVKEFLEFEIGDIIMLDKHFKEPVDIIIDKKVKFRG---IPGIKNNKY 316 Query: 137 GVRVIEIL 144 VR+ E++ Sbjct: 317 SVRITEVI 324 >gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio ammonificans HB-1] gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio ammonificans HB-1] Length = 83 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + ++ T+ + +I +K+ +++G M S ++ L +GD+ITLDK++ + +++T+N+Q Sbjct: 2 EVEKELTEKLERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLNDQ 61 Query: 120 KIAKGEITIMEEDDTHFGVRVIEIL 144 + GE+ ++ + +R+++++ Sbjct: 62 EFGIGELIVIND---KVSLRLVDLV 83 >gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] Length = 98 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + T + + NI V + + LG M + ++ L+ GD++ ++K+ G V+I + Sbjct: 14 EPVPKGNRDTGDLKQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFL 73 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +K+ GE +M+E +FG+ + EI Sbjct: 74 DEKKVGIGEAILMDE---NFGIVISEI 97 >gi|126697799|ref|YP_001086696.1| flagellar motor switch protein [Clostridium difficile 630] gi|115249236|emb|CAJ67049.1| Flagellar motor switch protein FliN [Clostridium difficile] Length = 104 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + N V + + +G+ I N+++L +G +I L+K V E +DI N++ A GE I E Sbjct: 30 VFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESIITNE 89 Query: 132 DDTHFGVRVIEILNA 146 VR+ +I ++ Sbjct: 90 T---LSVRLSKIEDS 101 >gi|16520043|ref|NP_444163.1| component RhcQ of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2494558|sp|P55719|Y4YK_RHISN RecName: Full=Probable translocation protein Y4yK gi|2182736|gb|AAB91950.1| component RhcQ of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 358 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 10/113 (8%) Query: 32 SSPTNNSEMLIQKNDVDNISEPIS----SDSNNILEKSTDNFDLIMNIPVKMQIILGSCC 87 + + L+ + S P+ ++ + L S + D +I + + G Sbjct: 244 TRADLEGDHLVLRGPFRPQSRPLECAHMTEIESQLRPSDADLD---DIEIVLVFECGRWP 300 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + + L + G V L + + VDI N + I +G+I + +D G+R+ Sbjct: 301 ISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDD---LGIRL 350 >gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514] gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus CCSD1] gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561] gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513] gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514] gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus CCSD1] gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561] gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513] gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 332 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + LGS + + ++ GD+I LDK E VDI I+ + +G I + + Sbjct: 260 IPLTAQLGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIIDKKVKFRG---IPGIKNNKY 316 Query: 137 GVRVIEIL 144 VR+ E++ Sbjct: 317 SVRITEVI 324 >gi|85060063|ref|YP_455765.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] gi|45504774|gb|AAS66864.1| SpaO [Sodalis glossinidius] gi|84780583|dbj|BAE75360.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] Length = 338 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 46/107 (42%), Gaps = 3/107 (2%) Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 + + D ++ + + + D + N+P+ ++ IL + + + Sbjct: 227 SGAAAVHPKVRDGLAAAAPTPTGRLALGDDTAADPLANLPLTLEFILQRRYLSLGEIQQF 286 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +G V+ LD + ++I N +A GE+ +E+ GV ++E+ Sbjct: 287 RQGKVLELDPEGEKHIEIRANGHLLALGELVQLED---RLGVELMEL 330 >gi|222082188|ref|YP_002541553.1| type III secretion apparatus protein, YscQ/HrcQ family [Agrobacterium radiobacter K84] gi|221726867|gb|ACM29956.1| type III secretion apparatus protein, YscQ/HrcQ family [Agrobacterium radiobacter K84] Length = 336 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +S+++ + + I +IPVK+ + + +S L ++++G V LD+ ++V+ Sbjct: 248 MSNETIDQDLQGAPTIASIGDIPVKLVFDIARIELPLSELESIAEGHVFPLDRPKQDAVE 307 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVI 141 I + I +GEI ++ VRV Sbjct: 308 IVTQGRIIGRGEIVTLDGLT---AVRVT 332 >gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168] gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168] Length = 334 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 7/92 (7%) Query: 58 SNNILEKSTDNFDLIM----NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 SN E++ + + I P+++ +G + +++L+ L GDVI LDK+ E VD Sbjct: 236 SNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVD 295 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 I I +G + + H V++ ++++ Sbjct: 296 IRIGKNVKFQG---VAGVSNKHMAVKITDVIS 324 >gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] Length = 83 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + V++ ++LG + + L+ + +G VI LD + V I NN +A+GE +E D Sbjct: 7 VDVEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGE---IEIRDD 63 Query: 135 HFGVRVI 141 + V Sbjct: 64 RIAITVT 70 >gi|269967238|ref|ZP_06181302.1| type III secretion protein [Vibrio alginolyticus 40B] gi|269828094|gb|EEZ82364.1| type III secretion protein [Vibrio alginolyticus 40B] Length = 322 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV++ +G + + L L G V L++ V + V + N + I + E+ + E Sbjct: 248 QLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKLVTLRANGKIIGECELVNVNE-- 305 Query: 134 THFGVRVIEILN 145 H GVRV+E+ Sbjct: 306 -HLGVRVVELFG 316 >gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814] gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica ATCC 49814] Length = 80 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + +++ ++LG + + L+ + +G VI LD + V I NN IA+GE+ I E Sbjct: 4 VEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVIDGE 60 >gi|312883879|ref|ZP_07743596.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368337|gb|EFP95872.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 321 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV++ +G + + L +L G L++ + V + N + I + E+ + E Sbjct: 247 QLPVELTFDVGQQTITLEQLNSLQPGFTFELNQPISSPVTMRANGKIIGECELVNINE-- 304 Query: 134 THFGVRVIEILNA 146 GVRVIE+L Sbjct: 305 -RLGVRVIELLGE 316 >gi|330953281|gb|EGH53541.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 85 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 LGS + ++ L ++ G V+ + + VD+ +N ++I +GE+ + + GVR+ Sbjct: 24 QLGSMELTLAQLREMAPGSVLPFTSQAHDEVDLMVNGRRIGRGELVTIGDG---LGVRL 79 >gi|269105050|ref|ZP_06157745.1| type III secretion inner membrane protein YscQ [Photobacterium damselae subsp. damselae CIP 102761] gi|268160685|gb|EEZ39183.1| type III secretion inner membrane protein YscQ [Photobacterium damselae subsp. damselae CIP 102761] Length = 321 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +P+++ +G + + L L G L++ + + V + N + I + E+ + E Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISDPVTMRANGKIIGECELVNINE-- 304 Query: 134 THFGVRVIEILN 145 GVRV+E+ Sbjct: 305 -RLGVRVLELFG 315 >gi|295696124|ref|YP_003589362.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912] gi|295411726|gb|ADG06218.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912] Length = 332 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 16/130 (12%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 MHI P P +S+ ++ +P ++ + + PV++ Sbjct: 214 MHIGMPHLTLERLLPKLSSQHMLGMGQAGRALDPAREEALR---------ERLRAAPVEI 264 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK--IAKGEITIMEEDDTHFG 137 + +LG + +L++L+ GDVI L + V V+I + ++ + + + D Sbjct: 265 RAVLGRTSIDFYDLMHLAAGDVIPLHQSVNRPVEIYVGDRVKYLGRPGV-----DHGRLA 319 Query: 138 VRVIEILNAQ 147 V++ EI + + Sbjct: 320 VQITEIADDE 329 >gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] Length = 504 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + + + + + + E Sbjct: 371 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 430 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 431 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 486 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 487 ILVRVDD---HFGIQMTELV 503 >gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J2-064] Length = 99 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 EP S + S D NI V + + LG M + ++ LS GDV+ ++K+ G Sbjct: 13 EPKESSQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 69 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V+I ++ +K+ GE +M+E +FG+ + EI Sbjct: 70 VEIFLDEKKVGIGEAILMDE---NFGIVISEI 98 >gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99] gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220] gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 515 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + + + + + + E Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 441 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 498 ILVRVDD---HFGIQMTELV 514 >gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067] Length = 502 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 ++ + K D+ I EP E ++ ++ +IPVK++++ G+ +++ + Sbjct: 396 AIQAQEVANKADMQEI-EPEMPLPIEEKETLSEMEAILEDIPVKLEVVFGTAKVKLETFI 454 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + + DVI L + + E + + +N I KG + +++ HFG+++ E++ Sbjct: 455 SWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDD---HFGIQMTELV 501 >gi|290893997|ref|ZP_06556972.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|290556443|gb|EFD89982.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] Length = 504 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + + + + + + E Sbjct: 371 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKSAEPVHQAVIEEKETLSEM 430 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 431 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 486 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 487 ILVRVDD---HFGIQMTELV 503 >gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 502 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 ++ + K D+ I EP E ++ ++ +IPVK++++ G+ +++ + Sbjct: 396 AIQAQEVANKADMQEI-EPEMPLPIEEKETLSEMEAILEDIPVKLEVVFGTAKVKLETFI 454 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + + DVI L + + E + + +N I KG + +++ HFG+++ E++ Sbjct: 455 SWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDD---HFGIQMTELV 501 >gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] Length = 100 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 EP + + S D NI V + + LG M + ++ LS GDV+ ++K+ G Sbjct: 14 EPKETPQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 70 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V+I ++ +K+ GE +M+E +FG+ + EI Sbjct: 71 VEIFLDEKKVGIGEAILMDE---NFGIVISEI 99 >gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland 1988] gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S] gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161] gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003] gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e] gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes] gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] Length = 99 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 EP + + S D NI V + + LG M + ++ LS GDV+ ++K+ G Sbjct: 13 EPKETPQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 69 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V+I ++ +K+ GE +M+E +FG+ + EI Sbjct: 70 VEIFLDEKKVGIGEAILMDE---NFGIVISEI 98 >gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 99 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I Sbjct: 13 EPKETTLEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEI 72 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 ++ +K+ GE +M+E +FG+ + EI Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98 >gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] Length = 504 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + + + ++EP+ E ++ ++ +IPV ++++ G+ +++ + Sbjct: 397 EKEATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFI 456 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + + DVI L + + E + + +N I KG + +++ HFG+++ E++ Sbjct: 457 SWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 503 >gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes Clip81459] gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175] gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816] Length = 515 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + + + ++EP+ E ++ ++ +IPV ++++ G+ +++ + Sbjct: 408 EKEATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFI 467 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + + DVI L + + E + + +N I KG + +++ HFG+++ E++ Sbjct: 468 SWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 514 >gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes Clip81459] gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J1-208] gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes L99] gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208] gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378] gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023] gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 100 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I Sbjct: 14 EPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEI 73 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 ++ +K+ GE +M+E +FG+ + EI Sbjct: 74 FLDEKKVGIGEAILMDE---NFGIVISEI 99 >gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J1-175] gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262] gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes] gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816] Length = 99 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I Sbjct: 13 EPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEI 72 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 ++ +K+ GE +M+E +FG+ + EI Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98 >gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] Length = 330 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P E ++ K + + E + D IP+ + LGS + + +L Sbjct: 218 PHLTLEPIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTY-IPL--TVQLGSTTVTVGDL 274 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + GDVI LDKR E V++ I+ + KG I + V++ E++ Sbjct: 275 LKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG---IPGIKSKRYSVKITEVI 322 >gi|47095266|ref|ZP_00232877.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|47016337|gb|EAL07259.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] Length = 504 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + I + + + E Sbjct: 371 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 430 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 431 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVMIGKG 486 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 487 ILVRVDD---HFGIQMTELV 503 >gi|254900064|ref|ZP_05259988.1| flagellar motor switch protein [Listeria monocytogenes J0161] gi|254911383|ref|ZP_05261395.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] gi|254935710|ref|ZP_05267407.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|258608293|gb|EEW20901.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|293589320|gb|EFF97654.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] Length = 515 Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + I + + + E Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVMIGKG 497 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 498 ILVRVDD---HFGIQMTELV 514 >gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120] Length = 514 Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + + + + +EP+ E ++ ++ +IPV ++++ G+ +++ + Sbjct: 407 AEKATPPAEIIEPEKPAEPVQPIVVEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFI 466 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + + DVI L + + E + + +N I KG + +++ HFG+++ E++ Sbjct: 467 SWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 513 >gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum DSM 12653] gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum DSM 12653] Length = 330 Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P E ++ K + + E + D IP+ + LGS + + +L Sbjct: 218 PHLTLEPIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTY-IPL--TVQLGSTTVTVGDL 274 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + GDVI LDKR E V++ I+ + KG I + V++ E++ Sbjct: 275 LKFEVGDVIMLDKRYNEPVEVIIDKKVKFKG---IPGIKSKRYSVKITEVI 322 >gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171] Length = 502 Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 21 HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM-NIPVKM 79 I NP ++ + N + +++ + I+ +IPVK+ Sbjct: 380 QIFNPAAAKEMAQLMLAIQAQEVANKANTQEMEPEMPLPIEEKETLSEMEAILEDIPVKL 439 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 +++ G+ +++ ++ + DVI L + + E + + +N I KG + +++ HFG++ Sbjct: 440 EVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKGILVRVDD---HFGIQ 496 Query: 140 VIEIL 144 + E++ Sbjct: 497 MTELV 501 >gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 99 Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I Sbjct: 13 EPNETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEI 72 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 ++ +K+ GE +M+E +FG+ + EI Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98 >gi|304311654|ref|YP_003811252.1| Type III secretion pathway protein [gamma proteobacterium HdN1] gi|301797387|emb|CBL45607.1| Type III secretion pathway protein [gamma proteobacterium HdN1] Length = 379 Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 10/123 (8%) Query: 27 QDTNVSSPTNN------SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ 80 QD SS N S+ + + + SS + + + +PV++ Sbjct: 254 QDWEASSHENGIRLDTISKFDMTGKAKMKLDQNGSSGPSELGFMQKKKLSSLSQLPVELS 313 Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDTHFGVR 139 + +G + + L NL G V + + E + + +N Q GE+ + GVR Sbjct: 314 LQVGQLQITLGELENLQPGYVFPMSSQNDELTLTVLVNQQPAGLGELVSIG---NQLGVR 370 Query: 140 VIE 142 + E Sbjct: 371 ITE 373 >gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] Length = 99 Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I Sbjct: 13 EPKETTQESREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEI 72 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 ++ +K+ GE +M+E +FG+ + EI Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98 >gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas subvibrioides ATCC 15264] gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas subvibrioides ATCC 15264] Length = 83 Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + V++ ++LG + +S L+ + +G VI LD + V I NN +A+G ++E + Sbjct: 7 VDVELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARG---MIEIRED 63 Query: 135 HFGVRVI 141 + V Sbjct: 64 RIAITVT 70 >gi|82470759|gb|ABB77411.1| HrcQ [Pantoea stewartii subsp. stewartii] Length = 336 Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +E + S S D+F L M +P+ +++ G + + L +L G V+TLD Sbjct: 241 TEGSDAVSKREHLASDDHFSLAM-LPLSLEVRCGRTRLTLGELQHLQPGSVLTLDNMTPG 299 Query: 111 SVDITINNQKIAKGEITIME 130 D+ IA+GE+ +E Sbjct: 300 EADLYYGETLIAQGELVDVE 319 >gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067] gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171] Length = 99 Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + NI V + + LG M + ++ LS GDV+ ++K+ G V+I Sbjct: 13 EPKETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEI 72 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 ++ +K+ GE +M+E +FG+ + EI Sbjct: 73 FLDEKKVGIGEAILMDE---NFGIVISEI 98 >gi|188583911|ref|YP_001927356.1| surface presentation of antigens (SPOA) protein [Methylobacterium populi BJ001] gi|179347409|gb|ACB82821.1| surface presentation of antigens (SPOA) protein [Methylobacterium populi BJ001] Length = 101 Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V ++++LG M + L+ + +G VI L+ + V+I N+ IA+G+I + Sbjct: 9 VDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVV---TGNRI 65 Query: 137 GVRVIEIL 144 V V E++ Sbjct: 66 SVEVTELI 73 >gi|23009135|ref|ZP_00050297.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magnetotacticum MS-1] Length = 101 Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V ++++LG M + L+ + +G VI L+ + V+I N+ IA+G+I + Sbjct: 9 VDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVV---TGNRI 65 Query: 137 GVRVIEIL 144 V V E++ Sbjct: 66 SVEVTELI 73 >gi|255026112|ref|ZP_05298098.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003] Length = 515 Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + I + + + E Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 498 ILVRVDD---HFGIQMTELV 514 >gi|224498782|ref|ZP_03667131.1| flagellar motor switch protein [Listeria monocytogenes Finland 1988] Length = 515 Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + I + + + E Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 498 ILVRVDD---HFGIQMTELV 514 >gi|254830309|ref|ZP_05234964.1| flagellar motor switch protein [Listeria monocytogenes 10403S] Length = 515 Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + I + + + E Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 498 ILVRVDD---HFGIQMTELV 514 >gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] Length = 515 Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + I + + + E Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 498 ILVRVDD---HFGIQMTELV 514 >gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28] gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e] gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] Length = 515 Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + I + + + E Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTVIEEKETLSEM 441 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ +IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 442 EQ----ILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 498 ILVRVDD---HFGIQMTELV 514 >gi|269963171|ref|ZP_06177506.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832135|gb|EEZ86259.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 321 Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +P+++ +G + + L L G L++ + V + N + I + E+ + E Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 304 Query: 134 THFGVRVIEILN 145 GVRV+E+ Sbjct: 305 -RLGVRVLELFG 315 >gi|237678818|emb|CAQ57545.1| RhcQ protein [Bradyrhizobium elkanii] Length = 371 Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 11/108 (10%) Query: 38 SEMLIQKNDVDNISEPI-----SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 E L+ + + S P+ ++ S + D + + + G M I Sbjct: 262 GERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSL---EITLVFECGRWPMSIGT 318 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 L ++++G V L + + VDI N Q+I +G+I + E+ VR+ Sbjct: 319 LRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEE---LAVRL 363 >gi|163853607|ref|YP_001641650.1| surface presentation of antigens (SPOA) protein [Methylobacterium extorquens PA1] gi|218532467|ref|YP_002423283.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|240141029|ref|YP_002965509.1| putative flagellar motor switch protein FliN [Methylobacterium extorquens AM1] gi|254563543|ref|YP_003070638.1| flagellar motor switch protein FliN [Methylobacterium extorquens DM4] gi|163665212|gb|ABY32579.1| surface presentation of antigens (SPOA) protein [Methylobacterium extorquens PA1] gi|218524770|gb|ACK85355.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|240011006|gb|ACS42232.1| putative flagellar motor switch protein FliN [Methylobacterium extorquens AM1] gi|254270821|emb|CAX26826.1| putative flagellar motor switch protein FliN [Methylobacterium extorquens DM4] Length = 101 Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V ++++LG M + L+ + +G VI L+ + V+I N+ IA+G+I + Sbjct: 9 VDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVV---TGNRI 65 Query: 137 GVRVIEIL 144 V V E++ Sbjct: 66 SVEVTELI 73 >gi|171915735|ref|ZP_02931205.1| type III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 342 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 4/105 (3%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 ++ I + I SD +T+ L+ + V++ ++G+ + L +L+ Sbjct: 239 AAATWQDKKLTIQQFIMSDPAP-TPAATEPLALVDQLEVELTFLVGTHAATLEQLRSLAP 297 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G I L ++V I N + I KGE+ + GVR+ E+ Sbjct: 298 GACIELPTPASQAVTICANGRAIGKGELL---DIGNRIGVRITEL 339 >gi|163802008|ref|ZP_02195904.1| type III secretion protein [Vibrio sp. AND4] gi|159174149|gb|EDP58957.1| type III secretion protein [Vibrio sp. AND4] Length = 321 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILE-KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 S + + +DN + I +N+ + S++ +P+++ +G + + L L Sbjct: 210 SSQNLWRGQLDNTTLHIQEKESNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNAL 269 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 G L++ V V + N + I + E+ + E GVRV+E+ Sbjct: 270 QPGFTFELNQPVSNPVTMRANGKIIGECELVNINE---RLGVRVLELFG 315 >gi|153832536|ref|ZP_01985203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio harveyi HY01] gi|148871331|gb|EDL70203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio harveyi HY01] Length = 321 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +P+++ +G + + L L G L++ + V + N + I + E+ + E Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 304 Query: 134 THFGVRVIEILN 145 GVRV+E+ Sbjct: 305 -RLGVRVLELFG 315 >gi|156974016|ref|YP_001444923.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116] gi|156525610|gb|ABU70696.1| hypothetical protein VIBHAR_01727 [Vibrio harveyi ATCC BAA-1116] Length = 322 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +P+++ +G + + L L G L++ + V + N + I + E+ + E Sbjct: 248 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 305 Query: 134 THFGVRVIEILN 145 GVRV+E+ Sbjct: 306 -RLGVRVLELFG 316 >gi|116872089|ref|YP_848870.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740967|emb|CAK20087.1| flagellar motor switch domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 512 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 55/109 (50%), Gaps = 7/109 (6%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVN 95 + L + + EP+ + + E ++ +IPV ++++ G+ +++ ++ Sbjct: 410 EEATTLTAAVEPEKPVEPVVEEKETLSEMEQ----ILEDIPVTLEVVFGTAKVKLEKFIS 465 Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + DV+ L + + E + + +N I KG + +++ HFG+++ E++ Sbjct: 466 WCEKDVVILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 511 >gi|41834183|gb|AAS13321.1| VscQ [Vibrio harveyi] Length = 321 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +P+++ +G + + L L G L++ + V + N + I + E+ + E Sbjct: 247 QLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINE-- 304 Query: 134 THFGVRVIEILN 145 GVRV+E+ Sbjct: 305 -RLGVRVLELFG 315 >gi|16799783|ref|NP_470051.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|16413160|emb|CAC95940.1| lin0708 [Listeria innocua Clip11262] Length = 513 Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 56/103 (54%), Gaps = 6/103 (5%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 I++++ ++P+ + L + + +IPV ++++ G+ +++ ++ + DV Sbjct: 416 IKEHETKEPAQPVVMEEKETLSEMEQILE---DIPVTLEVVFGTAKVKLEKFISWCEKDV 472 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 I L + + E + + +N I KG + +++ HFG+++ E++ Sbjct: 473 IILKESMNEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 512 >gi|315498407|ref|YP_004087211.1| surface presentation of antigens (spoa) protein [Asticcacaulis excentricus CB 48] gi|315416419|gb|ADU13060.1| surface presentation of antigens (SPOA) protein [Asticcacaulis excentricus CB 48] Length = 93 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++ ++LG + + L+ + +G VI LD R + V I NN +A+GEI I EE Sbjct: 20 EISVLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEK 74 >gi|10955563|ref|NP_052404.1| type III secretion system protein [Yersinia enterocolitica] gi|28373030|ref|NP_783678.1| type III secretion system protein [Yersinia enterocolitica] gi|32470291|ref|NP_863526.1| type III secretion system protein [Yersinia enterocolitica] gi|122815815|ref|YP_001004081.1| type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163585|ref|YP_004424927.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|14579349|gb|AAK69226.1|AF336309_21 YscQ [Yersinia enterocolitica] gi|4324350|gb|AAD16827.1| YscQ [Yersinia enterocolitica W22703] gi|23630602|gb|AAN37558.1| YscQ [Yersinia enterocolitica] gi|121663689|emb|CAL10051.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923234|emb|CBW54700.1| YscQ, T3SS component [Yersinia enterocolitica (type O:8)] gi|325667815|gb|ADZ44458.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 307 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61 + +V + L ++P+ +P ++ K + +S +S+ + Sbjct: 170 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 225 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 K + + + PV++ +G + L +L G +I L V V + N + + Sbjct: 226 NPKPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 282 Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143 G + E GVR+ E+ Sbjct: 283 GHGRLV---EIQGRLGVRIERLTEV 304 >gi|89898774|ref|YP_515884.1| type III secretion system protein [Chlamydophila felis Fe/C-56] gi|89332146|dbj|BAE81739.1| type III secretion flagellar motor switch domain [Chlamydophila felis Fe/C-56] Length = 371 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134 K+ + + + + LS+G ++ L+ VD+ +N K+ +GEI + + Sbjct: 308 KLVAEVSRYSLTVEEFLKLSQGSILNLNGV--HPSRGVDLILNGAKVGRGEIVSLGDV-- 363 Query: 135 HFGVRVIEI 143 G+RV+E+ Sbjct: 364 -LGIRVLEV 371 >gi|313620056|gb|EFR91570.1| flagellar motor switch protein [Listeria innocua FSL S4-378] Length = 398 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 EP E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + Sbjct: 305 ETKEPAQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESM 364 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 E + + +N I KG + +++ HFG+++ E++ Sbjct: 365 NEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 397 >gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] Length = 502 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Query: 21 HIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN-IPVKM 79 I NP ++ + N D +++ + I+ IPVK+ Sbjct: 380 QIFNPAAAKEMAQLMLAIQAQEVANKADTQEMKPEMPLPIEEKETLSEMEAILEAIPVKL 439 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 +++ G+ +++ ++ + DVI L + + E + + +N I KG + + + HFG++ Sbjct: 440 EVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVND---HFGIQ 496 Query: 140 VIEIL 144 + E++ Sbjct: 497 MTELV 501 >gi|294496838|ref|YP_003560535.1| type III secretion protein [Yersinia pestis Z176003] gi|262364006|gb|ACY64343.1| type III secretion protein [Yersinia pestis D182038] gi|294352426|gb|ADE66483.1| type III secretion protein [Yersinia pestis Z176003] Length = 305 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61 + +V + L ++P+ +P ++ K + +S +S+ + Sbjct: 168 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 223 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + + + + PV++ +G + L +L G +I L V V + N + + Sbjct: 224 NPEPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 280 Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143 G + E GVR+ E+ Sbjct: 281 GHGRLV---EIQGRLGVRIERLTEV 302 >gi|27376929|ref|NP_768458.1| RhcQ protein [Bradyrhizobium japonicum USDA 110] gi|12620525|gb|AAG60801.1|AF322012_106 RhcQ [Bradyrhizobium japonicum] gi|27350071|dbj|BAC47083.1| RhcQ protein [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 I + + G M + L +++G V L + + VDI N Q+I +G+I + E+ Sbjct: 303 IEITLVFECGRWPMPLGTLRTINEGHVFELGRHLDGPVDIVANGQRIGRGDIVRIGEE-- 360 Query: 135 HFGVRV 140 VR+ Sbjct: 361 -LAVRL 365 >gi|16082731|ref|NP_395177.1| type III secretion system protein [Yersinia pestis CO92] gi|31795278|ref|NP_857739.1| type III secretion system protein [Yersinia pestis KIM] gi|31795480|ref|NP_857934.1| type III secretion system protein [Yersinia pestis KIM] gi|45478541|ref|NP_995368.1| type III secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|51593912|ref|YP_068479.1| type III secretion system protein [Yersinia pseudotuberculosis IP 32953] gi|108793661|ref|YP_636811.1| type III secretion system protein [Yersinia pestis Antiqua] gi|145597139|ref|YP_001154603.1| type III secretion system protein [Yersinia pestis Pestoides F] gi|149192696|ref|YP_001293928.1| type III secretion system protein [Yersinia pestis CA88-4125] gi|162417770|ref|YP_001604475.1| type III secretion system protein [Yersinia pestis Angola] gi|165927755|ref|ZP_02223587.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. F1991016] gi|165940056|ref|ZP_02228590.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. IP275] gi|166011716|ref|ZP_02232614.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. E1979001] gi|166214457|ref|ZP_02240492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. B42003004] gi|167401907|ref|ZP_02307393.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422402|ref|ZP_02314155.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422438|ref|ZP_02314191.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422900|ref|ZP_02314653.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426869|ref|ZP_02318622.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897577|ref|YP_001874688.1| type III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229896859|ref|ZP_04512019.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|229900214|ref|ZP_04515350.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|270491107|ref|ZP_06208179.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|322836569|ref|YP_004210065.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9] gi|1176912|sp|P42713|YSCQ_YERPE RecName: Full=Yop proteins translocation protein Q gi|55977795|sp|P40296|YSCQ_YERPS RecName: Full=Yop proteins translocation protein Q gi|2465658|gb|AAB72200.1| YscQ [Yersinia pestis] gi|2996238|gb|AAC62561.1| Yop proteins translocation protein Q [Yersinia pestis KIM 10] gi|3822068|gb|AAC69788.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832463|emb|CAB54920.1| putative type III secretion protein [Yersinia pestis CO92] gi|45357163|gb|AAS58559.1| putative type III secretion protein YscQ [Yersinia pestis biovar Microtus str. 91001] gi|51591609|emb|CAF25413.1| yscQ; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|108782208|gb|ABG16263.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212907|gb|ABP42313.1| type III secretion protein [Yersinia pestis Pestoides F] gi|148872354|gb|ABR14844.1| putative type III secretion protein [Yersinia pestis CA88-4125] gi|162354790|gb|ABX88737.1| type III secretion apparatus protein YscQ [Yersinia pestis Angola] gi|165911966|gb|EDR30609.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. IP275] gi|165920191|gb|EDR37492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. F1991016] gi|165989323|gb|EDR41624.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. E1979001] gi|166204350|gb|EDR48830.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. B42003004] gi|166958190|gb|EDR55211.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958639|gb|EDR55660.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958675|gb|EDR55696.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048635|gb|EDR60043.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054168|gb|EDR63995.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700603|gb|ACC91231.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia pseudotuberculosis PB1/+] gi|229686734|gb|EEO78814.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700130|gb|EEO88169.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|262363849|gb|ACY60569.1| type III secretion protein [Yersinia pestis D106004] gi|270334850|gb|EFA45629.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|317374481|gb|ADV16656.1| type III secretion inner membrane protein [Yersinia pestis] gi|321161343|gb|ADW67049.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9] Length = 307 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61 + +V + L ++P+ +P ++ K + +S +S+ + Sbjct: 170 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 225 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + + + + PV++ +G + L +L G +I L V V + N + + Sbjct: 226 NPEPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 282 Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143 G + E GVR+ E+ Sbjct: 283 GHGRLV---EIQGRLGVRIERLTEV 304 >gi|475122|gb|AAA27677.1| yscQ [Yersinia pseudotuberculosis] Length = 307 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61 + +V + L ++P+ +P ++ K + +S +S+ + Sbjct: 170 LDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSH----ESDEL 225 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + + + + PV++ +G + L +L G +I L V V + N + + Sbjct: 226 NPEPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLL 282 Query: 122 AKGEITIMEEDDTHFGVRV---IEI 143 G + E GVR+ E+ Sbjct: 283 GHGRLV---EIQGRLGVRIERLTEV 304 >gi|188532667|ref|YP_001906464.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|188027709|emb|CAO95562.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 338 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFD-----LIMNIPVKMQIILGSCCMQISNLVNLSKG 99 N ++NI + D + + ++ + ++P+ +++ G M + L L G Sbjct: 229 NHLENIPLNSAGDDESTNDPQSEYLSGEESRRLASLPLSLEVRCGRTVMTLGELQQLQAG 288 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIME 130 V+TLD + + IA+GE+ +E Sbjct: 289 SVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319 >gi|226326426|ref|ZP_03801944.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198] gi|225205209|gb|EEG87563.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198] Length = 313 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P N + + +N+ + S ++ ++ N I +IPV + +L S + I + Sbjct: 202 PDENDLDDLIQLQQENLDDHNDVTSPTLVHDNSVNLQSINSIPVTVSFLLASKTLLIEQI 261 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L+ GD I L + + + I +N +A GE+ + + +F V + +AQ Sbjct: 262 EALAPGDKIELPENAYQHIIIKVNGISVASGELVKIGD---NFAVEIQRSFSAQ 312 >gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium xylanolyticum LX-11] gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium xylanolyticum LX-11] Length = 329 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D I N V +++++G+ + + +L++ KGDVI ++KR + +++ IN++ G + Sbjct: 250 DKISNTYVPLKVVIGTSKITVRDLLSFDKGDVIEINKRYKDPIEVKINDETKFLG---VP 306 Query: 130 EEDDTHFGVRVIEILNA 146 + + V++ EI + Sbjct: 307 GIRNKKYCVQITEICSE 323 >gi|318608198|emb|CBY78172.1| type III secretion inner membrane protein (YscQ,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] Length = 307 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +S +S+ + K + + + PV++ +G + L +L G +I L V V Sbjct: 218 MSHESDELNPKPLTDLNQL---PVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVR 274 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRV---IEI 143 + N + + G + E GVR+ E+ Sbjct: 275 LLANGRLLGHGRLV---EIQGRLGVRIERLTEV 304 >gi|207108700|ref|ZP_03242862.1| flagellar motor switch protein FliY [Helicobacter pylori HPKX_438_CA4C1] Length = 57 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 96 LSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + G V+ LD+ V + ++I ++++ IAKGE+ I++ +FG+++ +I + Sbjct: 1 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVD---GNFGIQITDIGTKK 49 >gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855] gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8] gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855] gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8] Length = 372 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 ISS + + + D ++ + V + LG + ++ L L +GDVI LD+ + + Sbjct: 242 ISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDVIPLDRETDDPI 301 Query: 113 DITINN 118 + +N Sbjct: 302 KVFVNG 307 >gi|15615009|ref|NP_243312.1| flagellar motor switch protein FliM [Bacillus halodurans C-125] gi|10175066|dbj|BAB06165.1| flagellar motor switch protein [Bacillus halodurans C-125] Length = 330 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 7/73 (9%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK--IAKGEITIMEEDD 133 P+ +Q LG + I ++L GDVI LD+ + E +++ + +A+ + Sbjct: 258 PLLIQTELGRSEITIHEFLHLGIGDVIELDQSIHEPLNVRVGGHLKYLAQ-----PGKKK 312 Query: 134 THFGVRVIEILNA 146 H V+V +++ Sbjct: 313 NHLAVQVTDVIEE 325 >gi|296389922|ref|ZP_06879397.1| type III secretion system protein [Pseudomonas aeruginosa PAb1] Length = 309 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +++ + +P+ + +G + + L L G ++ LD + V I N + + GE Sbjct: 229 SEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGE 288 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++ GVRV + Sbjct: 289 LVRLQD---RLGVRVTRLFG 305 >gi|313610118|gb|EFR85441.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208] Length = 515 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 66/140 (47%), Gaps = 7/140 (5%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + +++ + + + + E Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKETTTPAEIIEPEKPAESVHQAVIEEKETLSEM 441 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 442 EQ----ILEEIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497 Query: 125 EITIMEEDDTHFGVRVIEIL 144 + +++ HFG+++ E++ Sbjct: 498 ILVRVDD---HFGIQMTELV 514 >gi|313624702|gb|EFR94658.1| flagellar motor switch protein [Listeria innocua FSL J1-023] Length = 398 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 EP E ++ ++ +IPV ++++ G+ +++ ++ + DVI L + + Sbjct: 305 ETKEPEQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESM 364 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 E + + +N I KG + +++ HFG+++ E++ Sbjct: 365 NEPLVLALNGVTIGKGILVRVDD---HFGIQMTELV 397 >gi|254234793|ref|ZP_04928116.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|126166724|gb|EAZ52235.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] Length = 309 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++ + +P+ + +G + + L L G ++ LD + V I N + + GE+ Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++ GVRV + Sbjct: 290 VRLQD---RLGVRVTRLFG 305 >gi|188997537|ref|YP_001931788.1| surface presentation of antigens (SPOA) protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932604|gb|ACD67234.1| surface presentation of antigens (SPOA) protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 87 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +++ LI NI + + I L S L+NL +GD+I L+K + + V+I N+K+ Sbjct: 7 VDEIYKKISLIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFLNEKV 66 Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145 GE+ + E +GVR+++++ Sbjct: 67 GFGELVNVNE---KYGVRLVDLIK 87 >gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] Length = 323 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 ++ +PV++ +G + + + + L GDVITL+K VGE +++ ++ + Sbjct: 253 ILAEVPVELIAYIGRTRLPVRDFIQLQVGDVITLEKTVGEDLELYVDGHHKFQ---VQPG 309 Query: 131 EDDTHFGVRVIEIL 144 + V+V E++ Sbjct: 310 IVNKKIAVQVTEVV 323 >gi|107101126|ref|ZP_01365044.1| hypothetical protein PaerPA_01002158 [Pseudomonas aeruginosa PACS2] gi|254240039|ref|ZP_04933361.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|126193417|gb|EAZ57480.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] Length = 309 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++ + +P+ + +G + + L L G ++ LD + V I N + + GE+ Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++ GVRV + Sbjct: 290 VRLQD---RLGVRVTRLFG 305 >gi|218892350|ref|YP_002441217.1| type III secretion system protein [Pseudomonas aeruginosa LESB58] gi|218772576|emb|CAW28359.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] Length = 309 Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++ + +P+ + +G + + L L G ++ LD + V I N + + GE+ Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++ GVRV + Sbjct: 290 VRLQD---RLGVRVTRLFG 305 >gi|49083573|gb|AAT51064.1| PA1694 [synthetic construct] Length = 310 Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++ + +P+ + +G + + L L G ++ LD + V I N + + GE+ Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++ GVRV + Sbjct: 290 VRLQD---RLGVRVTRLFG 305 >gi|15596891|ref|NP_250385.1| type III secretion system protein [Pseudomonas aeruginosa PAO1] gi|9947667|gb|AAG05083.1|AE004596_9 translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] Length = 309 Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 ++ + +P+ + +G + + L L G ++ LD + V I N + + GE+ Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGEL 289 Query: 127 TIMEEDDTHFGVRVIEILN 145 +++ GVRV + Sbjct: 290 VRLQD---RLGVRVTRLFG 305 >gi|32477467|ref|NP_870461.1| flagellar motor switch protein fliN [fragment] [Rhodopirellula baltica SH 1] gi|32448018|emb|CAD77538.1| probable flagellar motor switch protein fliN [Fragment] [Rhodopirellula baltica SH 1] Length = 144 Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 10/107 (9%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + D +EP S+ EK ++ I + + L + ++ L G Sbjct: 46 MSENATEDKPTEPSPPTSSMYKEK-------VLKIRTTVNVTLAEKKEPLRKILALVPGS 98 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++T D + + IA GE + + FG+RV EI + Sbjct: 99 MLTFDVHCDRPLTLRAGGHPIATGETVKIGD---KFGLRVREIGVPK 142 >gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] Length = 308 Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Query: 49 NISEPISSDSNNILEKSTDNFDLIM----NIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 + E + S E+ +F+ + ++PV + + S ++ ++++++ GDVI L Sbjct: 209 KVGEGEADPSAAQREEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRDIIDMAVGDVIEL 268 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 + + I + + I G + + V+V + Sbjct: 269 RHAASKPLRIVVEGRTIGHG---VPGNNGKQLAVKVTD 303 >gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255] gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter winogradskyi Nb-255] Length = 97 Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + + Sbjct: 24 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVMV 77 >gi|27550058|gb|AAO18041.1| LscQ [Photorhabdus luminescens] Length = 309 Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 8/124 (6%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D PL P + K ++ + P S +S++ L + N ++ Sbjct: 185 PPQQQPDAPLLAYLEGRPWAYFKSHDHKLELITMHTPSSDNSDDTLPVTDLN-----DLE 239 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V + +G + + L +L G ++ L V I +N + + G + + + Sbjct: 240 VHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGVVRILVNQKCLGSGRLV---DIEGRL 296 Query: 137 GVRV 140 GVR+ Sbjct: 297 GVRI 300 >gi|237755392|ref|ZP_04584019.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium yellowstonense SS-5] gi|237692433|gb|EEP61414.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium yellowstonense SS-5] Length = 87 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 LI +I + + I L S L+NL +GD+I L+K + + V+I +N+K GE+ Sbjct: 12 KKISLIKDINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFSNEKAGFGEL 71 Query: 127 TIMEEDDTHFGVRVIEILN 145 + +G R+++++ Sbjct: 72 VNVN---GKYGARLVDLIK 87 >gi|170698146|ref|ZP_02889225.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] gi|170136911|gb|EDT05160.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] Length = 309 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 8/102 (7%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + SE +++ D + PVK++ + ++++ L G V+ LD Sbjct: 214 EQASEMRGDSQPGMMDGQAFQVDAL---PVKLEFAFRQRELTVADVARLHPGAVLPLDAG 270 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRV--IEILNAQ 147 V I N + +A GE+ + E V + IE+++ + Sbjct: 271 AEHEVKIYANGRYLALGELIQVGE---RLAVEIQSIELVDPK 309 >gi|289578422|ref|YP_003477049.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus Ab9] gi|297544698|ref|YP_003677000.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528135|gb|ADD02487.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus Ab9] gi|296842473|gb|ADH60989.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 332 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + LGS + + +N GD+I LDK + VDI I+ +G I + + Sbjct: 260 IPLTAQLGSTTITVKEFLNFEIGDIILLDKNFKDPVDIIIDKNVKFRG---IPGIRNNKY 316 Query: 137 GVRVIEIL 144 V++ E++ Sbjct: 317 SVKITEVI 324 >gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus DSM 12680] gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus DSM 12680] Length = 330 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 41/70 (58%), Gaps = 3/70 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V ++I++GS + + L+ L+ GDVI L++R+ E +++ I + +G+ ++ Sbjct: 259 VPVKILIGSTVITVRELLELAPGDVIPLERRLDEDLEVVIGQKPKFRGKPGVVG---NRL 315 Query: 137 GVRVIEILNA 146 +++ EI++ Sbjct: 316 ALKITEIVSE 325 >gi|116049644|ref|YP_791551.1| type III secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115584865|gb|ABJ10880.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] Length = 309 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +++ + +P+ + +G + + L L G ++ LD + V I N + + GE Sbjct: 229 SEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGE 288 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++ GVRV + Sbjct: 289 LVRLQD---RLGVRVTRLFG 305 >gi|167923337|ref|ZP_02510428.1| type III secretion system protein BsaV [Burkholderia pseudomallei BCC215] Length = 335 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 4/117 (3%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S D + + + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDASHDASHDEPTAAHAPPAFDIDAL--- 260 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 261 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 316 >gi|218674848|ref|ZP_03524517.1| type III secretion system translocation protein [Rhizobium etli GR56] gi|327192840|gb|EGE59766.1| type III secretion system translocation protein [Rhizobium etli CNPAF512] Length = 339 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+K+ G + + L + +G V LD+ + ++VDI + I +GEI ++ Sbjct: 272 IPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLS- 330 Query: 135 HFGVRVI 141 VRV Sbjct: 331 --AVRVT 335 >gi|56964023|ref|YP_175754.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16] gi|56910266|dbj|BAD64793.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16] Length = 329 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 +++ LG + I + L KGDV+ L++ + E +D+ + +K G+ + Sbjct: 259 LEVAAELGRSTITIEEFLRLGKGDVVALNQLIDEPLDVLVGGEKKFSGQPGV---KRDRM 315 Query: 137 GVRVIEILN 145 ++V ++L Sbjct: 316 ALQVTDVLG 324 >gi|313110380|ref|ZP_07796269.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] gi|310882771|gb|EFQ41365.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] Length = 309 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGE 125 +++ + +P+ + +G + + L L G ++ LD + V I N + + GE Sbjct: 229 SEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGE 288 Query: 126 ITIMEEDDTHFGVRVIEILN 145 + +++ GVRV + Sbjct: 289 LVRLQD---RLGVRVTRLFG 305 >gi|310766419|gb|ADP11369.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcQ protein [Erwinia sp. Ejp617] Length = 338 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 5/93 (5%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + D D ++E + + E+ + ++P+ +++ G + + L L Sbjct: 232 ESTALNSADDDALTEGSQPEFLSGEERPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 286 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIME 130 G V+TLD + + IA+GE+ +E Sbjct: 287 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319 >gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str. 1873] gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str. 1873] Length = 331 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Query: 56 SDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + LE+S + MNI + M +LGS + + + LS GDV+TLD V + Sbjct: 237 ENDTDTLEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDVVTLDNLTSSPVKM 296 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + ++ G+ I+ ++ GV++++I++ Sbjct: 297 MVGDKPYLLGKPGIIGKNR---GVQILDIIDK 325 >gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5] gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5] Length = 80 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + N+ V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + + Sbjct: 1 MATLDNVSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60 >gi|221209605|ref|ZP_03582586.1| bcscQ [Burkholderia multivorans CGD1] gi|221170293|gb|EEE02759.1| bcscQ [Burkholderia multivorans CGD1] Length = 441 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 10/109 (9%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 EM ++ D+ S ++ + + + D + V ++ L M + LV L Sbjct: 337 EMPLEPPRTDSAS---AAAPDTPPADAPRSLDGLA---VDLRFELPPTSMPLGELVTLQP 390 Query: 99 GDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 G VI L + +SV + N I G++ + + GVRV+ + Sbjct: 391 GAVIELPHGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTPP 436 >gi|190894059|ref|YP_001984353.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] gi|190699720|gb|ACE93803.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] Length = 339 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+K+ G + + L + +G V LD+ + ++VDI + I +GEI ++ Sbjct: 272 IPIKLVFDAGRLELPLRALETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLS- 330 Query: 135 HFGVRVI 141 VRV Sbjct: 331 --AVRVT 335 >gi|21492904|ref|NP_659979.1| type III secretion system translocation protein [Rhizobium etli CFN 42] gi|21467329|gb|AAM54992.1| type III secretion system translocation protein [Rhizobium etli CFN 42] Length = 339 Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+K+ G + + L + +G V LD+ + ++VDI + I +GEI ++ Sbjct: 272 IPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLS- 330 Query: 135 HFGVRVI 141 VRV Sbjct: 331 --AVRVT 335 >gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2] gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2] Length = 80 Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 I N+ V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + + Sbjct: 1 MATIDNVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVV 60 >gi|329942356|ref|ZP_08291166.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10] gi|332286998|ref|YP_004421899.1| secretion and cellular translocation protein Q [Chlamydophila psittaci 6BC] gi|313847595|emb|CBY16583.1| possible flagellar or type III secretion protein [Chlamydophila psittaci RD1] gi|325507164|gb|ADZ18802.1| secretion and cellular translocation protein Q [Chlamydophila psittaci 6BC] gi|328815266|gb|EGF85254.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10] gi|328914228|gb|AEB55061.1| type III secretion translocase SctQ [Chlamydophila psittaci 6BC] Length = 371 Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134 K+ + + +NLS+G ++ L+ VD+ +N K+ +GEI + + Sbjct: 308 KLVAEASRYSLTVEEFLNLSQGSILNLNGI--HPSRGVDLVLNGAKVGRGEIVSLGDV-- 363 Query: 135 HFGVRVIEI 143 G+RV+E+ Sbjct: 364 -LGIRVLEV 371 >gi|300310128|ref|YP_003774220.1| type III secretion system protein [Herbaspirillum seropedicae SmR1] gi|300072913|gb|ADJ62312.1| type III secretion system protein [Herbaspirillum seropedicae SmR1] Length = 400 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D+ + +P+ +Q+ LG + +S L L + V+ L +++ IT ++ +GE+ + Sbjct: 326 DVAVELPLTLQVELGRLSLSLSQLRALGEQVVLELHGASAQALRITSAGVELGRGEVVSV 385 Query: 130 EEDDTHFGVRVI 141 + GVR++ Sbjct: 386 D---GRLGVRIV 394 >gi|84785904|gb|ABC62091.1| secretion and cellular translocation protein Q [Chlamydophila psittaci] Length = 371 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134 K+ + + +NLS+G ++ L+ VD+ +N K+ +GEI + + Sbjct: 308 KLVAEASRYSLTVEEFLNLSQGSILNLNGI--HPSRGVDLVLNGAKVGRGEIVSLGDV-- 363 Query: 135 HFGVRVIEI 143 G+RV+E+ Sbjct: 364 -LGIRVLEV 371 >gi|304316897|ref|YP_003852042.1| flagellar motor switch protein FliM [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778399|gb|ADL68958.1| flagellar motor switch protein FliM [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 329 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 11/93 (11%) Query: 60 NILEKSTDNFDLIMN------IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + EK + + +I + IP+K ++G + + +L+N +KGD++ ++K+ + ++ Sbjct: 236 SNAEKQSCDIGIIKDKISNTYIPLK--AVIGMSKITVRDLLNFNKGDILEINKKYKDPIE 293 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I IN++ G + + + V++ EI + Sbjct: 294 IKINDETKFLG---VPGIKNKKYCVQITEICSE 323 >gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88] gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88] Length = 332 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Query: 54 ISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 ++ + E+S D I + ++ +LG + + + LS GDV+ LD ++ + + Sbjct: 236 FQENNEAVREESNKQLRDRINIVETELVAVLGGAKITVEEFLRLSLGDVLILDNQIDKPI 295 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I + NQ A G+ ++++ + G+++++IL+ Sbjct: 296 SINVENQLYAYGKPGVVDK---NMGIQILDILDK 326 >gi|288553053|ref|YP_003424988.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4] gi|288544213|gb|ADC48096.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4] Length = 330 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+ +Q LG + I+ + L +GDVI LD+ + E + +T+ +K + + Sbjct: 258 PLLIQSELGRSEITINEFLQLGEGDVIELDQLINEPLLVTVEGEKKFYAQ---PGKMKNK 314 Query: 136 FGVRVIEILNA 146 V+V +++ Sbjct: 315 MAVQVTDVIEE 325 >gi|171319017|ref|ZP_02908144.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171095772|gb|EDT40725.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 329 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130 + + V++ + L C + + L NL G ++ L K E SVDI ++A+G + Sbjct: 254 LEDRHVELSVELAICRLTLGELANLRAGQMLRLAKAADEMSVDIRYRGTRVARGSLV--- 310 Query: 131 EDDTHFGVRV 140 E + GVR+ Sbjct: 311 EINGLLGVRI 320 >gi|221635435|ref|YP_002523311.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM 5159] gi|221158064|gb|ACM07182.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM 5159] Length = 334 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 + P + S ++ + + +++++ LG + + L+ L GDV+ LD+ V Sbjct: 221 FANPRRATSPQVIADLMAQLE---EVSLQLRVELGRARLTVRELLALEPGDVLVLDQDVS 277 Query: 110 ESVDITINN 118 + + + N Sbjct: 278 FPLAVYVEN 286 >gi|166154014|ref|YP_001654132.1| type III secretion system protein [Chlamydia trachomatis 434/Bu] gi|166154889|ref|YP_001653144.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335214|ref|ZP_07223458.1| type III secretion system protein [Chlamydia trachomatis L2tet1] gi|165930002|emb|CAP03485.1| Type III secretion component, basal body [Chlamydia trachomatis 434/Bu] gi|165930877|emb|CAP06439.1| Type III secretion component, basal body [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 373 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134 K+ + + + + L G V+ D VDI +N K+ +G I +++ Sbjct: 310 KIVAEVARYSLSVGEFLKLGPGSVLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV-- 365 Query: 135 HFGVRVIEI 143 G+RV+E+ Sbjct: 366 -LGIRVLEV 373 >gi|312135842|ref|YP_004003180.1| flagellar motor switch protein flim [Caldicellulosiruptor owensensis OL] gi|311775893|gb|ADQ05380.1| flagellar motor switch protein FliM [Caldicellulosiruptor owensensis OL] Length = 329 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 ++ S ++ L+K + V ++ +LG + + + L GDV+ LD+ Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 R + +++ + N+ G + + +++ + + Sbjct: 289 RKNQEIEVYVGNKLKFYG---VPGRKEGRVAIKITRVEEGE 326 >gi|259909717|ref|YP_002650073.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96] gi|224965339|emb|CAX56871.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96] gi|283479803|emb|CAY75719.1| Type III secretion protein HrcQa [Erwinia pyrifoliae DSM 12163] Length = 341 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 5/93 (5%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + D D ++E + + E+ + ++P+ +++ G + + L L Sbjct: 235 ESTALNSADDDALNEGSQPEFLSGEERPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 289 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIME 130 G V+TLD + + IA+GE+ +E Sbjct: 290 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 322 >gi|83646013|ref|YP_434448.1| flagellar motor switch/type III secretory pathway protein [Hahella chejuensis KCTC 2396] gi|83634056|gb|ABC30023.1| Flagellar motor switch/type III secretory pathway protein [Hahella chejuensis KCTC 2396] Length = 397 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++ + + ++PV++ + ++ + +L+ G I LDK + +V + Sbjct: 283 QPMTHTTTPNNDAPLQPLHDLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTL 342 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVI 141 + +Q IA+ E+ + + G R+ Sbjct: 343 LVQSQAIAEAELVQVGD---QIGARIT 366 >gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 80 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M + ++ LS+G +I LD + V I +NN IA G + + Sbjct: 7 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMV 60 >gi|85058546|ref|YP_454248.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] gi|84779066|dbj|BAE73843.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] Length = 304 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 VDN+ P + ++ ++ +PV ++ +L + ++ L NL G V L + Sbjct: 204 VDNVIAPSNEETQPQHTLPLFDWS---RVPVTVEFVLEANSYPLAELDNLQPGTVFDLSE 260 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V +++ I +N Q + GE+ +E++ V + Sbjct: 261 NVEKNIKIFLNQQLVGHGELVTLEDE--RLAVEIT 293 >gi|15605405|ref|NP_220191.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX] gi|255311498|ref|ZP_05354068.1| type III secretion system protein [Chlamydia trachomatis 6276] gi|255317800|ref|ZP_05359046.1| type III secretion system protein [Chlamydia trachomatis 6276s] gi|3329123|gb|AAC68267.1| Flagellar Motor Switch Domain/YscQ family [Chlamydia trachomatis D/UW-3/CX] gi|296436213|gb|ADH18387.1| type III secretion system protein [Chlamydia trachomatis G/9768] gi|296438073|gb|ADH20234.1| type III secretion system protein [Chlamydia trachomatis G/11074] gi|297140574|gb|ADH97332.1| type III secretion system protein [Chlamydia trachomatis G/9301] gi|297748803|gb|ADI51349.1| type III secreted protein SctQ [Chlamydia trachomatis D-EC] gi|297749683|gb|ADI52361.1| type III secreted protein SctQ [Chlamydia trachomatis D-LC] Length = 373 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 L + D EP L +T + + + + + L G Sbjct: 284 LQEMQPEDAPEEPSEGGPATPLPSATK-----------IVAEVARYSLSVGEFLKLGPGS 332 Query: 101 VITLDKRVGES---VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V+ D VDI +N K+ +G I +++ G+RV+E+ Sbjct: 333 VLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV---LGIRVLEV 373 >gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2] gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2] Length = 332 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 9/99 (9%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + ++P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++ Sbjct: 240 DSNQPVNQDDSRELQKS------LNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKI 293 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E ++ I+ + + + + + + +++ L + Sbjct: 294 TEPLETFIDGKPYFRAK---PGKQEDRLAIELLDKLEEE 329 >gi|296437141|gb|ADH19311.1| type III secretion system protein [Chlamydia trachomatis G/11222] Length = 373 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 L + D EP L +T + + + + + L G Sbjct: 284 LQEMQPEDAPEEPSEGGPATPLPSATK-----------IVAEVARYSLSVGEFLKLGPGS 332 Query: 101 VITLDKRVGES---VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V+ D VDI +N K+ +G I +++ G+RV+E+ Sbjct: 333 VLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV---LGIRVLEV 373 >gi|76789412|ref|YP_328498.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13] gi|237803102|ref|YP_002888296.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT] gi|237805023|ref|YP_002889177.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255349061|ref|ZP_05381068.1| type III secretion system protein [Chlamydia trachomatis 70] gi|255503599|ref|ZP_05381989.1| type III secretion system protein [Chlamydia trachomatis 70s] gi|255507279|ref|ZP_05382918.1| type III secretion system protein [Chlamydia trachomatis D(s)2923] gi|76167942|gb|AAX50950.1| SctQ [Chlamydia trachomatis A/HAR-13] gi|231273323|emb|CAX10238.1| Type III secretion component, basal body [Chlamydia trachomatis B/TZ1A828/OT] gi|231274336|emb|CAX11131.1| Type III secretion component, basal body [Chlamydia trachomatis B/Jali20/OT] gi|289525716|emb|CBJ15197.1| Type III secretion component, basal body [Chlamydia trachomatis Sweden2] gi|296435286|gb|ADH17464.1| type III secretion system protein [Chlamydia trachomatis E/150] gi|296439004|gb|ADH21157.1| type III secretion system protein [Chlamydia trachomatis E/11023] Length = 373 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 L + D EP L +T + + + + + L G Sbjct: 284 LQEMQPEDAPEEPSEGGPATPLPSATK-----------IVAEVARYSLSVGEFLKLGPGS 332 Query: 101 VITLDKRVGES---VDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V+ D VDI +N K+ +G I +++ G+RV+E+ Sbjct: 333 VLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDV---LGIRVLEV 373 >gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC30] gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC10] gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC20] gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC30] gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC10] gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC20] Length = 332 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 9/99 (9%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + ++P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++ Sbjct: 240 DSNQPVNQDDSRELQKS------LNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKI 293 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E ++ I+ + + + + + + +++ L + Sbjct: 294 TEPLETFIDGKPYFRAK---PGKQEDRLAIELLDKLEEE 329 >gi|62184686|ref|YP_219471.1| type III secretion system protein [Chlamydophila abortus S26/3] gi|62147753|emb|CAH63497.1| possible flagellar or type III secretion protein [Chlamydophila abortus S26/3] Length = 371 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134 K+ + + ++LS+G ++ L+ VD+ +N K+ +GEI + + Sbjct: 308 KLVAEASRYSLTVEEFLHLSQGSILNLNGI--HPSRGVDLILNGAKVGRGEIVSLGDV-- 363 Query: 135 HFGVRVIEI 143 G+RV+E+ Sbjct: 364 -LGIRVLEV 371 >gi|167590549|ref|ZP_02382937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ubonensis Bu] Length = 211 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 7/102 (6%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + P + + ++ D + V ++ L S M + L L G VI L Sbjct: 111 EPTRTDTPPTLSPDAPPHEAPRTLDALA---VDLRFELPSTSMPLGELAVLQPGAVIELQ 167 Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + +SV + N I G + + + GVRV+ + Sbjct: 168 QGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 206 >gi|312792659|ref|YP_004025582.1| flagellar motor switch protein flim [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179799|gb|ADQ39969.1| flagellar motor switch protein FliM [Caldicellulosiruptor kristjanssonii 177R1B] Length = 329 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 ++ S ++ L+K + V ++ +LG + + + L GDV+ LD+ Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 R + +++ + N+ G + + V++ + + Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326 >gi|312876509|ref|ZP_07736492.1| flagellar motor switch protein FliM [Caldicellulosiruptor lactoaceticus 6A] gi|311796720|gb|EFR13066.1| flagellar motor switch protein FliM [Caldicellulosiruptor lactoaceticus 6A] Length = 329 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 ++ S ++ L+K + V ++ +LG + + + L GDV+ LD+ Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 R + +++ + N+ G + + V++ + + Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326 >gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus ATCC 12755] gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus ATCC 12755] Length = 336 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 9/99 (9%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + ++P++ D + L+KS + + + ++++LG M +S ++L +GDVI LDK++ Sbjct: 244 DSNQPVNQDDSRELQKS------LNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKI 297 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E ++ I+ + + + + + + +++ L + Sbjct: 298 TEPLETFIDGKPYFRAK---PGKQEDRLAIELLDKLEEE 333 >gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] Length = 518 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 +E +++ +EPI + +T+ +I +IP+ +++I G+ +++++ Sbjct: 409 QEEVQAETPVEEVVETPPAEPIQVEKATPQISTTETEAVIDSIPITLEVIFGTAKVKLAD 468 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + + D++ L + + + + N I G + + + HFG+++ E+ Sbjct: 469 FITWCEKDIVILKESYEQPLSLLANGIHIGSGTLVRVND---HFGIKITEL 516 >gi|255523752|ref|ZP_05390718.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] gi|296186755|ref|ZP_06855157.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] gi|255512621|gb|EET88895.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] gi|296048792|gb|EFG88224.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] Length = 332 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 54 ISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 ++ ILE+S +NI + + +LG+ + + + + L GDV+TL+ + + Sbjct: 236 QDTNDEAILEESRVKLRQRLNIVNMNLTAVLGTTNITVDDFLRLGVGDVLTLNDKANTPI 295 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + ++ G+ ++ + + GV++++I++ Sbjct: 296 KLMVEDKPYCYGKPGVLGK---NMGVQILDIIDK 326 >gi|108763665|ref|YP_633788.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] gi|108467545|gb|ABF92730.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] Length = 416 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +PV ++I L + +S L L G ++ L E V + + ++ +A+ E+ +E + Sbjct: 349 LPVDVEIELTRVMIPLSELAALKPGALLPLHINASEPVVLRVGDRAVARAELVEIEGEVG 408 >gi|302872559|ref|YP_003841195.1| flagellar motor switch protein FliM [Caldicellulosiruptor obsidiansis OB47] gi|302575418|gb|ADL43209.1| flagellar motor switch protein FliM [Caldicellulosiruptor obsidiansis OB47] Length = 329 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 ++ S ++ L+K + V ++ +LG + + + L GDV+ LD+ Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 R + +++ + N+ G + + V++ + + Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326 >gi|238759390|ref|ZP_04620555.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236] gi|238702417|gb|EEP94969.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236] Length = 311 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 5/109 (4%) Query: 36 NNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP---VKMQIILGSCCMQISN 92 + + ++DNI E + + E +N ++ VK+ +LG + + Sbjct: 195 QQEGAFVIEENIDNI-EEVEETVPTLDEVLPENLPSHFDVTKLTVKLTFVLGHSEIPLEE 253 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 L ++ G V +L V + N Q +A+GE+ + +D+ G+ V Sbjct: 254 LAHIQPGAVYSLGADKDREVKVYANKQLVAEGELVYIGDDEE-LGLEVT 301 >gi|289805113|ref|ZP_06535742.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 275 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S + T + + + IP ++ +G ++I L L GDV+ + Sbjct: 176 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 234 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 235 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 266 >gi|161614165|ref|YP_001588130.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363529|gb|ABX67297.1| hypothetical protein SPAB_01907 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 322 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S + T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|16760493|ref|NP_456110.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141747|ref|NP_805089.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162229|ref|ZP_03347939.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416629|ref|ZP_03349773.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213647286|ref|ZP_03377339.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854185|ref|ZP_03382717.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827207|ref|ZP_06545930.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511809|pir||AB0697 probable type III secretion protein ssaQ [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502789|emb|CAD01947.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137375|gb|AAO68938.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 322 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S + T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|329850252|ref|ZP_08265097.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum C19] gi|328840567|gb|EGF90138.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum C19] Length = 71 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 LG + + L+ + +G VI LD R + V I NN +A+GEI I EE Sbjct: 3 LGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEK 52 >gi|213581368|ref|ZP_03363194.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 244 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S + T + + + IP ++ +G ++I L L GDV+ + Sbjct: 145 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 203 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 204 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 235 >gi|85859177|ref|YP_461379.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] gi|85722268|gb|ABC77211.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] Length = 333 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + I LGS + ++VNL GDVITLD+ + V+I + KG + Sbjct: 258 LDILIELGSTLISAKDVVNLKPGDVITLDQYCTDPVNIFVEGMMKFKG---YPGTYKGNQ 314 Query: 137 GVRVIEILNAQ 147 VR+ EI+ + Sbjct: 315 AVRISEIVQDK 325 >gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18] gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] Length = 80 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + + Sbjct: 7 VSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV 60 >gi|169831882|ref|YP_001717864.1| MCP methylation inhibitor CheC [Candidatus Desulforudis audaxviator MP104C] gi|169638726|gb|ACA60232.1| CheC, inhibitor of MCP methylation [Candidatus Desulforudis audaxviator MP104C] Length = 369 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 26/46 (56%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 E + + DLI+++P+K+ +ILG I +++ L+ G +I Sbjct: 289 AGAGFSELALEKLDLILDLPLKVTVILGRSKRPIKDVLGLTPGSII 334 >gi|312126831|ref|YP_003991705.1| flagellar motor switch protein flim [Caldicellulosiruptor hydrothermalis 108] gi|311776850|gb|ADQ06336.1| flagellar motor switch protein FliM [Caldicellulosiruptor hydrothermalis 108] Length = 329 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 ++ S ++ L+K + V ++ +LG + + + L GDV+ LD+ Sbjct: 235 FSTSAKETSEETKEYLQKKIERTR------VTVKAVLGRTQITVREFLELQVGDVLRLDR 288 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 R + +++ + N+ G + + V++ + + Sbjct: 289 RKNQEIEVFVGNKLKFYG---VPGRKEGRIAVKITRVEEGE 326 >gi|222530127|ref|YP_002574009.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii DSM 6725] gi|222456974|gb|ACM61236.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii DSM 6725] Length = 329 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V ++ +LG + + + L GDV+ LD+R + +++ + N+ G + + Sbjct: 259 VTVKAVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYG---VPGRKEGRI 315 Query: 137 GVRVIEILNAQ 147 V++ + + Sbjct: 316 AVKITRVEEGE 326 >gi|312597800|gb|ADQ89915.1| RscQ [Pseudomonas fluorescens] Length = 367 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 11/141 (7%) Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSS---PTNNSEMLIQKNDVD--NISEPISSDSNNIL 62 + +++ + + D D + S+ P + + + + + + Sbjct: 229 LLALEETVMSTTADTDILTPDWDDSTGYEPDAQAAEAAEHPESAYAAADTEEAPMTEPVA 288 Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + + FD ++P+ + I G + + L NL+ G V+ + + + + +A Sbjct: 289 AEVPERFD---DLPLALTIRCGHLQLTLGELRNLAPGAVLQVQGVAPGTAALFYGERALA 345 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE+ E D G+++ + Sbjct: 346 HGELV---EVDGRLGLQIAHV 363 >gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1] gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1] Length = 99 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +SS + + + + + V + ++LG+C M I ++ LS+G +I LD + V Sbjct: 3 MSSVTESSRDFGGPAVSTLDKVTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVK 62 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + NN IA G + + D V V E+L Sbjct: 63 VLANNLPIANGVVLV---DRNRIAVEVKEML 90 >gi|16799781|ref|NP_470049.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|16413158|emb|CAC95938.1| lin0706 [Listeria innocua Clip11262] Length = 78 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+++ LG + +L+++ KG V L+ G V ITI+ + I GEI D Sbjct: 7 IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTGNVVKITISGKCIGYGEILT---KDG 63 Query: 135 HFGVRVIEI 143 V++ ++ Sbjct: 64 KMFVKITKL 72 >gi|312621580|ref|YP_004023193.1| flagellar motor switch protein flim [Caldicellulosiruptor kronotskyensis 2002] gi|312202047|gb|ADQ45374.1| flagellar motor switch protein FliM [Caldicellulosiruptor kronotskyensis 2002] Length = 329 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V ++ +LG + + + L GDV+ LD+R + +++ + N+ G + + Sbjct: 259 VTVKAVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYG---VPGRKEGRI 315 Query: 137 GVRVIEILNAQ 147 V++ + + Sbjct: 316 AVKITRVEEGE 326 >gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009] gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1] gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris DX-1] gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris CGA009] gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris TIE-1] gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris DX-1] Length = 80 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + + Sbjct: 7 VSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLV 60 >gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5] gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB5] Length = 80 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M I ++ LS+G +I LD + V I NN IA G + + Sbjct: 7 VSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLV 60 >gi|76152315|gb|ABA39816.1| HrcQ [Erwinia pyrifoliae] Length = 338 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 41/89 (46%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 ++ +++ + ++ + S ++ + ++P+ +++ G + + L L G V Sbjct: 231 LESTALNSADDDALNEGSQPEFLSGEDNPQLASLPLSLEVRCGRTALTLGELQRLQAGSV 290 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIME 130 +TLD + + IA+GE+ +E Sbjct: 291 VTLDNVTPGEAGLYHGDTLIARGELVDVE 319 >gi|330812431|ref|YP_004356893.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380539|gb|AEA71889.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 367 Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 11/141 (7%) Query: 8 ISYIKDNLEGRSMHIDNPLQDTNVSS---PTNNSEMLIQKNDVD--NISEPISSDSNNIL 62 + +++ + + D D + S+ P + + + + + + Sbjct: 229 LLALEETVMSTTADTDILTPDWDDSTGYEPDAQAAEAAEHPESAYAAADTEEAPMTEPVA 288 Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + + FD ++P+ + I G + + L NL+ G V+ + + + + +A Sbjct: 289 AEVPERFD---DLPLALTIRCGHLQLTLGELRNLAPGAVLQVQGVAPGTAALFYGERALA 345 Query: 123 KGEITIMEEDDTHFGVRVIEI 143 GE+ E D G+++ + Sbjct: 346 HGELV---EVDGRLGLQIAHV 363 >gi|86749492|ref|YP_485988.1| hypothetical protein RPB_2372 [Rhodopseudomonas palustris HaA2] gi|86572520|gb|ABD07077.1| Surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris HaA2] Length = 80 Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 N+ V + ++LG+ M I ++ LS+G +I LD + V I NN +A G + + Sbjct: 6 NVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPVASGVVLV 60 >gi|312171086|emb|CBX79345.1| Type III secretion protein HrcQa [Erwinia amylovora ATCC BAA-2158] Length = 338 Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + D D ++E + + + ++P+ +++ G + + L L Sbjct: 232 ESTALNSADDDALTEGSLPEYTGCEDNPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 286 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIME 130 G V+TLD + + IA+GE+ +E Sbjct: 287 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319 >gi|292487017|ref|YP_003529887.1| type III secretion protein HrcQa [Erwinia amylovora CFBP1430] gi|292900598|ref|YP_003539967.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|89474869|gb|AAB06004.2| HrcQ [Erwinia amylovora] gi|291200446|emb|CBJ47575.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552434|emb|CBA19479.1| Type III secretion protein HrcQa [Erwinia amylovora CFBP1430] Length = 338 Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 38 SEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLS 97 + D D ++E + + + ++P+ +++ G + + L L Sbjct: 232 ESTALNSADDDALTEGSLPEYTGCEDNPQ-----LASLPLSLEVRCGRTALTLGELQRLQ 286 Query: 98 KGDVITLDKRVGESVDITINNQKIAKGEITIME 130 G V+TLD + + IA+GE+ +E Sbjct: 287 AGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319 >gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14] gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter hamburgensis X14] Length = 87 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + + Sbjct: 14 VSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVVV 67 >gi|115358963|ref|YP_776101.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] gi|115284251|gb|ABI89767.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] Length = 381 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + P ++ + + + + D + V ++ L + + L L G VI L Sbjct: 281 EPTRTDTPSATTHDASADDAPRSLDSLA---VDLRFELPPTSIPLGELGTLQPGAVIELQ 337 Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + +SV + N I G++ + + GVRV+ + Sbjct: 338 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 376 >gi|254502219|ref|ZP_05114370.1| putative surface presentation of antigens protein [Labrenzia alexandrii DFL-11] gi|222438290|gb|EEE44969.1| putative surface presentation of antigens protein [Labrenzia alexandrii DFL-11] Length = 88 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 I V + ++LG M + L+ + +G VI LD + V I NN +AKG++ ++ E Sbjct: 7 INVDISVVLGENHMPVHQLLRMGRGAVIDLDVDEDDDVKIYANNTLVAKGQVVLLGE--- 63 Query: 135 HFGVRVIEIL 144 G+ + E+L Sbjct: 64 RIGISITEVL 73 >gi|168233613|ref|ZP_02658671.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468585|ref|ZP_03074569.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197247910|ref|YP_002146624.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194454949|gb|EDX43788.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211613|gb|ACH49010.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205332385|gb|EDZ19149.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 322 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|16764768|ref|NP_460383.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995052|ref|ZP_02576142.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|3024662|sp|P74860|SSAQ_SALTY RecName: Full=Secretion system apparatus protein SsaQ gi|16419939|gb|AAL20342.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327192|gb|EDZ13956.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246624|emb|CBG24434.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993307|gb|ACY88192.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157953|emb|CBW17448.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912403|dbj|BAJ36377.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129690|gb|ADX17120.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988305|gb|AEF07288.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 322 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|161520304|ref|YP_001583731.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia multivorans ATCC 17616] gi|160344354|gb|ABX17439.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia multivorans ATCC 17616] Length = 443 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 24/125 (19%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + PL+ T +P +D P + D V ++ Sbjct: 337 EMPLEPTRTDTPPATGAA----HDASPADAPRALDGLA----------------VDLRFE 376 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVI 141 L M + L L G VI L + + +SV + N I G + + + GVRV+ Sbjct: 377 LPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVV 433 Query: 142 EILNA 146 + Sbjct: 434 TLTQP 438 >gi|205352866|ref|YP_002226667.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857076|ref|YP_002243727.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272647|emb|CAR37557.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708879|emb|CAR33209.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|309243394|gb|ADO51970.1| SsaQ [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627938|gb|EGE34281.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|168463172|ref|ZP_02697103.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634559|gb|EDX52911.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|168263750|ref|ZP_02685723.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822288|ref|ZP_02834288.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341310|gb|EDZ28074.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347591|gb|EDZ34222.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|320086103|emb|CBY95877.1| Secretion system apparatus protein ssaQ [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|194445909|ref|YP_002040670.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404572|gb|ACF64794.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|198245358|ref|YP_002215714.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939874|gb|ACH77207.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623461|gb|EGE29806.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|167551613|ref|ZP_02345367.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168240931|ref|ZP_02665863.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448655|ref|YP_002045421.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197264125|ref|ZP_03164199.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389410|ref|ZP_03216021.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224584071|ref|YP_002637869.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|194406959|gb|ACF67178.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197242380|gb|EDY25000.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199601855|gb|EDZ00401.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323619|gb|EDZ11458.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339429|gb|EDZ26193.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224468598|gb|ACN46428.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|62180009|ref|YP_216426.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127642|gb|AAX65345.1| Secretion system apparatus SsaQ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714476|gb|EFZ06047.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|56413611|ref|YP_150686.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362535|ref|YP_002142172.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127868|gb|AAV77374.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094012|emb|CAR59508.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] Length = 335 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + + V + + LG + + +++ L +GDVI LD + + + + + N+ E Sbjct: 254 LSKVAVPVALELGHTVLSLGDVLQLREGDVIRLDAKTSDPLGLRVGNRVKFLCEA---GS 310 Query: 132 DDTHFGVRVIEILNAQ 147 + H+ RV+E+L+++ Sbjct: 311 FNKHYAARVLEVLSSE 326 >gi|124381914|ref|YP_001025863.1| type III secretion system protein BsaV [Burkholderia mallei NCTC 10229] gi|126447935|ref|YP_001077948.1| type III secretion system protein BsaV [Burkholderia mallei NCTC 10247] gi|254359076|ref|ZP_04975348.1| type III secretion system protein BsaV [Burkholderia mallei 2002721280] gi|126240789|gb|ABO03901.1| type III secretion system protein BsaV [Burkholderia mallei NCTC 10247] gi|148028263|gb|EDK86223.1| type III secretion system protein BsaV [Burkholderia mallei 2002721280] gi|261826559|gb|ABN00415.2| type III secretion system protein BsaV [Burkholderia mallei NCTC 10229] Length = 335 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 4/117 (3%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S D + + + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDTSHDTSHDTSHDEPTAAHAPPAFDIDAL--- 260 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + + L G V+ L GE V I N + +GE+ + E Sbjct: 261 PVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 316 >gi|207109698|ref|ZP_03243860.1| flagellar motor switch protein FliY [Helicobacter pylori HPKX_438_CA4C1] Length = 164 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 34/62 (54%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + +E I + ++ N +++++ + +++ +G M + ++V++ G V+ LD+ V Sbjct: 103 STAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 162 Query: 109 GE 110 + Sbjct: 163 ND 164 >gi|204927926|ref|ZP_03219127.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323268|gb|EDZ08464.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53] gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisA53] Length = 82 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M + ++ LS+G +I LD + V I NN +A G + + Sbjct: 9 VSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASGMVLV 62 >gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] Length = 329 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 7/80 (8%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEIT 127 LI + ++ +LG+ + +++ +NL+ GD+I LD++V E +D+ + N + A Sbjct: 253 SLISKAQIPVKAVLGNSTISVNDFLNLNVGDIIRLDRKVDEELDVYVGNIHKFTA----- 307 Query: 128 IMEEDDTHFGVRVIEILNAQ 147 + D ++ VR+ +L + Sbjct: 308 LPGSADDNYAVRITNVLRGE 327 >gi|168239302|ref|ZP_02664360.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737381|ref|YP_002114431.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712883|gb|ACF92104.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288023|gb|EDY27410.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 322 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|325519944|gb|EGC99199.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. TJI49] Length = 134 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 + D + P S + ++ D + V ++ L M + L L G V Sbjct: 30 PTRTDTSHTGAPDVSGAAASTGDTSRPLDGLA---VDLRFELPPTSMPLGELSALQPGAV 86 Query: 102 ITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I L + + +SV + N I G++ + + GVRV+ + Sbjct: 87 IELQQGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLAQP 129 >gi|301027455|ref|ZP_07190792.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 69-1] gi|300394963|gb|EFJ78501.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 69-1] Length = 315 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+S E + ++PVK++ +LG M + + +L +I+L ++++I Sbjct: 223 SESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|33596842|ref|NP_884485.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33573543|emb|CAE37534.1| putative type III secretion protein [Bordetella parapertussis] Length = 359 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 ++ + + ++EP + D ++ D IPV++ LG ++ L Sbjct: 249 AEHASFRVTQGWTPIMTEPATPDPGETPAQAEATLDT-DQIPVRLTFDLGEREFTLAQLR 307 Query: 95 NLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +L G L++ + + V + N + G + + D GV + + Sbjct: 308 SLHPGCTFDLERPIADGPVMVRANGLLLGSGRLV---DIDGRIGVVLQSV 354 >gi|1526984|emb|CAA68198.1| secretion system apparatus, SsaQ [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 216 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 117 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 175 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 176 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 207 >gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio yellowstonii DSM 11347] Length = 322 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 15/144 (10%) Query: 10 YIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66 +I+ + + + I P+ +T + E I + EPI + Sbjct: 179 FIRTEMNPQFVTIVTPVDVVIETEFTLEIETRECKIMVCIPYSSVEPIKEKLYSAFLADR 238 Query: 67 DNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 D D+ I N PV+++ ILG + L++L GD++TL +R+ E VD+ + Sbjct: 239 DEMDMKWIGRLKAQIKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVE 298 Query: 118 NQKIAKGEITIMEEDDTHFGVRVI 141 KG++ ++ +++I Sbjct: 299 GVPKFKGKL---GTFKGNYAIKII 319 >gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus DSM 8271] gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus DSM 8271] Length = 332 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 + ++NI S+ E I + V +++ LG + + L+ L KGDVI L Sbjct: 226 DKLNNILLFSSAGKAQNPEDQRTIRRKIERVRVPLKVFLGQTQITVRELLGLEKGDVIPL 285 Query: 105 DKRVGESVDITINN-QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + + E +DI + +K A I V++ +LN + Sbjct: 286 QQHIQEPLDIYVGKFKKFAG----IPGLHSNRLAVQISGVLNEE 325 >gi|33600616|ref|NP_888176.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568215|emb|CAE32128.1| putative type III secretion protein [Bordetella bronchiseptica RB50] Length = 359 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 ++ + + ++EP + D ++ D IPV++ LG ++ L Sbjct: 249 AEHASFRVTQGWTPIMTEPATPDPGETPAQAEATLDT-DQIPVRLTFDLGEREFTLAQLR 307 Query: 95 NLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +L G L++ + + V + N + G + + D GV + + Sbjct: 308 SLHPGCTFDLERPIADGPVMVRANGLLLGSGRLV---DIDGRIGVVLQSV 354 >gi|327542145|gb|EGF28638.1| flagellar motor switch protein fliN [Rhodopirellula baltica WH47] Length = 99 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 10/107 (9%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + D +EP S+ EK ++ I + + L + ++ L G Sbjct: 1 MSENATEDKPTEPSPPTSSMYKEK-------VLKIRTTVNVTLAEKKEPLRKILALVPGS 53 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++T D + + IA GE + + FG+RV EI + Sbjct: 54 MLTFDVHCDRPLTLRAGGHPIATGETVKIGD---KFGLRVREIGVPK 97 >gi|330444061|ref|YP_004377047.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum E58] gi|328807171|gb|AEB41344.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum E58] Length = 371 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 11/110 (10%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P + + +V P+ D + L+ + + + Sbjct: 273 PKSGDFKITSYPNVQPEDAPLPEDHEAPAAPLPGHCKLV--------AEVARYGLAVDEF 324 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + L+ G ++ L VDI ++ K+ +GEI + + G+RV+E+ Sbjct: 325 LKLAPGSILNLGVHPSRGVDIILDGAKVGRGEILALGDV---LGIRVLEV 371 >gi|258511384|ref|YP_003184818.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478110|gb|ACV58429.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 331 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 ++++PV +++ +G + + +++L +GD I L + + + + ++ + G + + Sbjct: 254 LLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSV---GK 310 Query: 132 DDTHFGVRVI 141 + + V+++ Sbjct: 311 RNRVYAVKIV 320 >gi|218288306|ref|ZP_03492605.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius LAA1] gi|218241665|gb|EED08838.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius LAA1] Length = 331 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 ++++PV +++ +G + + +++L +GD I L + + + + ++ + G + + Sbjct: 254 LLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSV---GK 310 Query: 132 DDTHFGVRVI 141 + + V+++ Sbjct: 311 RNRVYAVKIV 320 >gi|238913179|ref|ZP_04657016.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 322 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|284922804|emb|CBG35892.1| type III secretion system protein [Escherichia coli 042] Length = 315 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+S E + ++PVK++ +LG M + + +L +I+L ++++I Sbjct: 223 SESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|134294004|ref|YP_001117740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia vietnamiensis G4] gi|134137161|gb|ABO58275.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia vietnamiensis G4] Length = 392 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + P ++ + + + + D + V ++ L + + L L G VI L Sbjct: 292 EPTRTDTPPATAHDAPPDDAPRSLDGLA---VDLRFELPPTSIPLGELGALQPGAVIELQ 348 Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + +SV + N I G + + + GVRV+ + Sbjct: 349 QGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 387 >gi|37527632|ref|NP_930976.1| type III secretion system protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787067|emb|CAE16142.1| Type III secretion component protein SctQ [Photorhabdus luminescens subsp. laumondii TTO1] Length = 310 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++ V + +G + + L +L G ++ L +V I +N + + G + + Sbjct: 236 LNDLEVHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGAVRILVNQKCLGSGRLV---D 292 Query: 132 DDTHFGVRV 140 + GVRV Sbjct: 293 IEGRLGVRV 301 >gi|322615098|gb|EFY12021.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619939|gb|EFY16812.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622251|gb|EFY19096.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627773|gb|EFY24563.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632882|gb|EFY29626.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636627|gb|EFY33330.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641180|gb|EFY37822.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644885|gb|EFY41418.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650279|gb|EFY46693.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655852|gb|EFY52154.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660178|gb|EFY56417.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665256|gb|EFY61444.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669513|gb|EFY65661.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673439|gb|EFY69541.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677367|gb|EFY73431.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679970|gb|EFY76009.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687442|gb|EFY83414.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194105|gb|EFZ79304.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198586|gb|EFZ83687.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202912|gb|EFZ87947.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208632|gb|EFZ93570.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211168|gb|EFZ96015.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217609|gb|EGA02324.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218958|gb|EGA03468.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223788|gb|EGA08092.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229411|gb|EGA13534.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232634|gb|EGA16730.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240328|gb|EGA24372.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242683|gb|EGA26704.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245894|gb|EGA29882.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252458|gb|EGA36305.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256477|gb|EGA40210.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260040|gb|EGA43665.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267196|gb|EGA50681.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271480|gb|EGA54901.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 322 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S T + + + IP ++ +G ++I L L GDV+ + Sbjct: 223 VQDIETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 281 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 282 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 313 >gi|107025883|ref|YP_623394.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia AU 1054] gi|116692933|ref|YP_838466.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia HI2424] gi|170737802|ref|YP_001779062.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] gi|105895257|gb|ABF78421.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia AU 1054] gi|116650933|gb|ABK11573.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia HI2424] gi|169819990|gb|ACA94572.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] Length = 384 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 9/107 (8%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + + + P + D+ + D + V ++ L M + L L G Sbjct: 281 MPLEPTRTDSAPPTTHDAPPA--DVPRSLDGLA---VDLRFELPPTSMPLGELSALQPGA 335 Query: 101 VITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 VI L + + +SV + N I G + + + GVRV+ + Sbjct: 336 VIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 379 >gi|33593241|ref|NP_880885.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603233|emb|CAC79578.1| bscQ [Bordetella pertussis Tohama I] gi|33563616|emb|CAE42517.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382650|gb|AEE67497.1| putative type III secretion protein [Bordetella pertussis CS] Length = 359 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 ++ + + ++EP + D ++ D IPV++ LG ++ L Sbjct: 249 AEHASFRVTQGWTPIMTEPATPDPGETPAQADATLDT-DQIPVRLTFDLGEREFTLAQLR 307 Query: 95 NLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +L G L++ + + V + N + G + + D GV + + Sbjct: 308 SLHPGCTFDLERPIADGPVMVRANGLLLGSGRLV---DIDGRIGVVLQSV 354 >gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC 2396] gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC 2396] Length = 318 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 P++SD+ + E D + N+ +K++ LGS + ++ L +++G L + Sbjct: 220 TPMTSDTQHTPEPLDAPSD-LGNLELKLEFHLGSLNLTLAELSQMTEGAAFDLGLSLEAP 278 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V + +N Q +A+ E+ ++ VR+ Sbjct: 279 VAMKVNGQTLARCELVEIDGRLGARVVRLT 308 >gi|146305086|ref|YP_001185551.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] gi|145573287|gb|ABP82819.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] Length = 133 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 42/129 (32%), Gaps = 3/129 (2%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 + + + P E + + P ++ + + I Sbjct: 2 STEHLSQESLQEMAEMDADALPEGFEERPGEMHLEGQEFAPQDEHASAVEPQQMAALGSI 61 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++P+++ + G + + L L G V+ + + + + +GE+ + Sbjct: 62 AHLPLQLTLRCGQLTLSVDQLRQLGSGSVLEIHGVAPGHATLCHGERVVGEGELV---DV 118 Query: 133 DTHFGVRVI 141 D G+++ Sbjct: 119 DGRLGLQIT 127 >gi|206563882|ref|YP_002234645.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092661|gb|AAK50139.1| BcscQ [Burkholderia cenocepacia] gi|198039922|emb|CAR55899.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 366 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 9/107 (8%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + + + P + D+ + + D + V ++ L M + L L G Sbjct: 263 MPLEPTRTDSAPPTTHDAPP--GDAPRSLDGLA---VDLRFELPPTSMPLGELSALQPGA 317 Query: 101 VITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 VI L + + +SV + N I G + + + GVRV+ + Sbjct: 318 VIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 361 >gi|217077700|ref|YP_002335418.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B] gi|217037555|gb|ACJ76077.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B] Length = 329 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V++ + +G + + +++NL GDVI LD + + I +N + G + + Sbjct: 259 VELSVAVGETNLTLWDILNLEVGDVIRLDTFKEDPLKIKLNGKDKFLG---VPGVFKGKY 315 Query: 137 GVRVIEILNAQ 147 V+++E+L+ + Sbjct: 316 AVKIVEVLDEE 326 >gi|284007399|emb|CBA72809.1| type III secretion apparatus protein YscQ,HrcQ,SpaO [Arsenophonus nasoniae] Length = 292 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78 D +Q+ + TN++ + + + + S + +NIL + D +IP+ Sbjct: 166 QQTYDVVIQNKVIGHFTNDNGVYMVNTNFYDESIDDTISEDNILIEPGDKIRSKDDIPIT 225 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 ++ IL + + L N+ +G V+ D +V I N IAKG I +E+ GV Sbjct: 226 LEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIED---RLGV 282 Query: 139 RVIEILNAQ 147 + + + + Sbjct: 283 EITHLFHNE 291 >gi|29839806|ref|NP_828912.1| type III secretion system protein [Chlamydophila caviae GPIC] gi|29834153|gb|AAP04790.1| type III secretion translocase SctQ [Chlamydophila caviae GPIC] Length = 371 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134 K+ + + + L++G V+ + VD+ +N K+ +GEI + + Sbjct: 308 KLVAEASRYSLTVEEFLKLTQGSVLNFNGV--HPSRGVDLILNGAKVGRGEIVSLGDV-- 363 Query: 135 HFGVRVIEI 143 G+RV+E+ Sbjct: 364 -LGIRVLEV 371 >gi|170738280|ref|YP_001779540.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] gi|169820468|gb|ACA95050.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] Length = 364 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 10/100 (10%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 D P+ + + S D +L PV +I + + ++ L L G VI L Sbjct: 270 DRNDHPVPGAPDAETQTSLDELEL----PVSFEIE--TVTLPLAQLSALRPGYVIELRGT 323 Query: 108 VGES-VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + ++ + + Q I GE+ + E GVRVI++ + Sbjct: 324 LRDARIRLLAYGQLIGIGELVTVGE---QLGVRVIDVFGS 360 >gi|289433976|ref|YP_003463848.1| flagellar motor switch protein fliN, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315301943|ref|ZP_07872944.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|289170220|emb|CBH26760.1| flagellar motor switch protein fliN, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313629685|gb|EFR97817.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|313639060|gb|EFS04047.1| conserved domain protein [Listeria seeligeri FSL S4-171] Length = 78 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 NIP+++ LG I++L+++ KG V L+ V V ITI+ + I GEI Sbjct: 5 HNIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILT---K 61 Query: 133 DTHFGVRVIEI 143 D V++ ++ Sbjct: 62 DGKMFVKITKL 72 >gi|146296292|ref|YP_001180063.1| flagellar motor switch protein FliM [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409868|gb|ABP66872.1| flagellar motor switch protein FliM [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 329 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 S+ + E++ + I V ++ ILG + + + L GDVI LD+R + + Sbjct: 235 FSTSAKETSEETKEYLQRKIEKTKVTIRAILGRTKITVREFLELQVGDVIRLDRRKNQEI 294 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 ++ + ++ G + + ++V + Sbjct: 295 EVFVGDKLKFYG---VPGRKEGRVAIKVTRV 322 >gi|168187522|ref|ZP_02622157.1| flagellar motor switch protein FliM [Clostridium botulinum C str. Eklund] gi|169294580|gb|EDS76713.1| flagellar motor switch protein FliM [Clostridium botulinum C str. Eklund] Length = 331 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEED 132 + + M ++LGS + + ++L GDVITLD V + + + +AK I Sbjct: 257 VELPMSVVLGSTKLDVREFLSLCIGDVITLDALTSSPVKVMVEDEPYLLAKPGIV----- 311 Query: 133 DTHFGVRVIEILNA 146 + GV++++I++ Sbjct: 312 GKNKGVQILDIIDK 325 >gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae] Length = 325 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+++N+ +S N + I IP++ +G +++ L +LS+G +I L V V I Sbjct: 214 SETDNLANQSLTNLEEI-QIPIRF--EVGRQYIELQALTHLSEGSLIDLAVPVNGDVRII 270 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 N Q + G++ E G++V+E+ + Sbjct: 271 ANQQPLGTGQLV---EIQGRLGIKVVELFAKK 299 >gi|194292013|ref|YP_002007920.1| sctq: non flagellar t3S system conserved protein. flin/mopa/spao family. [Cupriavidus taiwanensis LMG 19424] gi|193225917|emb|CAQ71864.1| SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO family [Cupriavidus taiwanensis LMG 19424] Length = 399 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 11/127 (8%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EGR + + T+ + +N + M ++ D S+PI + + + + Sbjct: 276 EGRRLLVQAGADSTDSTDVSNGAHM--EEQDPARQSQPI-----PHPDAAQPPLSRLDQL 328 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134 V ++ +G + ++ L ++ G V L + + +S V I N +I G + + Sbjct: 329 EVTLRFEVGDVAVPLAELRAVAPGYVFELPQPLKQSEVRIVANGNRIGTGTLIAVG---N 385 Query: 135 HFGVRVI 141 GVR+ Sbjct: 386 RLGVRIT 392 >gi|300936201|ref|ZP_07151137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 21-1] gi|300458658|gb|EFK22151.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 21-1] Length = 315 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + ++PVK++ +LG M + + +L +I L ++++I +N Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIIPLLPEAEKNIEIRVNGALTG 289 Query: 123 KGEITIMEEDDTHFGVRV 140 GE+ +++ GV + Sbjct: 290 YGELVEVDD---KLGVEI 304 >gi|189353517|ref|YP_001949144.1| type III secretion system apparatus protein [Burkholderia multivorans ATCC 17616] gi|189337539|dbj|BAG46608.1| type III secretion system apparatus protein [Burkholderia multivorans ATCC 17616] Length = 385 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 24/125 (19%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 + PL+ T +P +D P + D V ++ Sbjct: 279 EMPLEPTRTDTPPATGAA----HDASPADAPRALDGLA----------------VDLRFE 318 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVI 141 L M + L L G VI L + + +SV + N I G + + + GVRV+ Sbjct: 319 LPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVV 375 Query: 142 EILNA 146 + Sbjct: 376 TLTQP 380 >gi|189426342|ref|YP_001953519.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ] gi|189422601|gb|ACD96999.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ] Length = 331 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 4/101 (3%) Query: 48 DNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D + E + D I + + I++ P+++ + LG+ + + L++L GD I LDK Sbjct: 226 DKLKEGMQFDLMAIDPQWSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDK 285 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + + + +G I + +++ +I++ + Sbjct: 286 PCTSELLVKVEGVPKYQG---IPGIRHGNKAMQISDIISTK 323 >gi|254185166|ref|ZP_04891755.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] gi|184215758|gb|EDU12739.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] Length = 335 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 4/117 (3%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S D + + + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDASHDTSHDEPTAAHAPPAFDIDAL--- 260 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N + GE+ + E Sbjct: 261 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGCGELIQVGEQ 316 >gi|172063755|ref|YP_001811406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] gi|171996272|gb|ACB67190.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] Length = 381 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + P + + + + + D + V ++ L + + L L G VI L Sbjct: 281 EPTRTDTPSVTTHDASADDAPRSLDSLA---VDLRFELPPTSIPLGELGTLQPGAVIELQ 337 Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + +SV + N I G++ + + GVRV+ + Sbjct: 338 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 376 >gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium azorense Az-Fu1] gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium azorense Az-Fu1] Length = 83 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 48/82 (58%), Gaps = 3/82 (3%) Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++ L+ ++ V++++ L + L+N+ +GD+I L+K + + + + + N A G Sbjct: 3 TIEDLKLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIG 62 Query: 125 EITIMEEDDTHFGVRVIEILNA 146 E+T + E +G+R+++++ Sbjct: 63 EMTNINE---KYGIRIVDLIKE 81 >gi|293412213|ref|ZP_06654936.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B354] gi|291468984|gb|EFF11475.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B354] Length = 315 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + ++PVK++ +LG M + + +L +I+L ++++I +N Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289 Query: 123 KGEITIMEEDDTHFGVRV 140 GE+ +++ GV + Sbjct: 290 YGELVEVDD---KLGVEI 304 >gi|218706363|ref|YP_002413882.1| surface presentation of antigens protein SpaO [Escherichia coli UMN026] gi|298382090|ref|ZP_06991687.1| type III secretion inner membrane protein [Escherichia coli FVEC1302] gi|331674343|ref|ZP_08375103.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli TA280] gi|218433460|emb|CAR14362.1| Type III secretion apparatus protein [Escherichia coli UMN026] gi|298277230|gb|EFI18746.1| type III secretion inner membrane protein [Escherichia coli FVEC1302] gi|331068437|gb|EGI39832.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli TA280] Length = 315 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + ++PVK++ +LG M + + +L +I+L ++++I +N Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289 Query: 123 KGEITIMEEDDTHFGVRV 140 GE+ +++ GV + Sbjct: 290 YGELVEVDD---KLGVEI 304 >gi|302037615|ref|YP_003797937.1| flagellar motor switch protein FliM [Candidatus Nitrospira defluvii] gi|300605679|emb|CBK42012.1| Flagellar motor switch protein FliM [Candidatus Nitrospira defluvii] Length = 323 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D + V + + LG+ + + +L+N + GDV+ LD+ G+ + + +G+ Sbjct: 251 DSLQECDVALTVQLGTARINVQDLLNFNPGDVLMLDQHPGDPMLCLVEGDPKFQGQ---P 307 Query: 130 EEDDTHFGVRVIEILN 145 + RV +IL Sbjct: 308 GIFKGNHACRVTKILG 323 >gi|301026122|ref|ZP_07189596.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 196-1] gi|299879817|gb|EFI88028.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 196-1] Length = 315 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + + L +I+L ++++I Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|293416109|ref|ZP_06658749.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] gi|291432298|gb|EFF05280.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] Length = 315 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+S E + ++PVK++ +LG M + + L +I+L ++++I Sbjct: 223 SESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|323978517|gb|EGB73599.1| YscQ/HrcQ family protein type III secretion lipoprotein [Escherichia coli TW10509] Length = 315 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + ++PVK++ +LG M + + +L +I+L ++++I +N Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289 Query: 123 KGEITIMEEDDTHFGVRV 140 GE+ +++ GV + Sbjct: 290 YGELVEVDD---KLGVEI 304 >gi|256024630|ref|ZP_05438495.1| surface presentation of antigens protein SpaO [Escherichia sp. 4_1_40B] Length = 315 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + + L +I+L ++++I Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] Length = 327 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI-NNQKIAKGEITI 128 LI + M+ +LG + + + VNL GD+I LD++V + +++ + N +K A + Sbjct: 251 SLIDRAQIPMKAVLGHSRISVGDFVNLQLGDIIRLDRKVDDELEVYVGNIKKFA----AL 306 Query: 129 MEEDDTHFGVRVIEILNAQ 147 + + +R+ E++ + Sbjct: 307 PGYSEDKYAIRITEVIKEE 325 >gi|300950615|ref|ZP_07164517.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 116-1] gi|300958196|ref|ZP_07170350.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 175-1] gi|301643798|ref|ZP_07243835.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 146-1] gi|307139551|ref|ZP_07498907.1| surface presentation of antigens protein SpaO [Escherichia coli H736] gi|331643551|ref|ZP_08344682.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli H736] gi|300315148|gb|EFJ64932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 175-1] gi|300450095|gb|EFK13715.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 116-1] gi|301077831|gb|EFK92637.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 146-1] gi|309703223|emb|CBJ02558.1| type III secretion system protein [Escherichia coli ETEC H10407] gi|331037022|gb|EGI09246.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli H736] Length = 315 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + + L +I+L ++++I Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|170018890|ref|YP_001723844.1| surface presentation of antigens protein SpaO [Escherichia coli ATCC 8739] gi|169753818|gb|ACA76517.1| type III secretion system apparatus protein YscQ/HrcQ [Escherichia coli ATCC 8739] gi|323941616|gb|EGB37796.1| YscQ/HrcQ family protein type III secretion lipoprotein [Escherichia coli E482] Length = 315 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + + L +I+L ++++I Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|292488066|ref|YP_003530943.1| surface presentation of antigens protein SpaO [Erwinia amylovora CFBP1430] gi|292899277|ref|YP_003538646.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291199125|emb|CBJ46239.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291553490|emb|CBA20535.1| Surface presentation of antigens protein SpaO [Erwinia amylovora CFBP1430] Length = 307 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 +D + + + ++P++++ +L S + ++ L + G + L+ + V I Sbjct: 209 TDGYDECRDEDETLNRWSDLPIEIEFVLDSKSVTLAELDTIEPGTLFPLNDCAEQRVKIY 268 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEI 143 +N + A+GE+ ++ + + V + ++ Sbjct: 269 LNRKFFARGELVALD--NGNLAVEIKQV 294 >gi|157162321|ref|YP_001459639.1| surface presentation of antigens protein SpaO [Escherichia coli HS] gi|157068001|gb|ABV07256.1| type III secretion apparatus protein EpaO [Escherichia coli HS] Length = 315 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + + L +I+L ++++I Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|323966656|gb|EGB62088.1| YscQ/HrcQ family protein type III secretion lipoprotein [Escherichia coli M863] gi|327251617|gb|EGE63303.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli STEC_7v] Length = 315 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + ++PVK++ +LG M + + +L +I+L ++++I +N Sbjct: 230 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 289 Query: 123 KGEITIMEEDDTHFGVRV 140 GE+ +++ GV + Sbjct: 290 YGELVEVDD---KLGVEI 304 >gi|188496341|ref|ZP_03003611.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli 53638] gi|188491540|gb|EDU66643.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli 53638] Length = 315 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + + L +I+L ++++I Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|293416352|ref|ZP_06658991.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] gi|291431708|gb|EFF04691.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] Length = 299 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 3/84 (3%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 +I E + +PV + +L + ++ L L +G V+ L + +I N Sbjct: 210 QDIQETEQHVVQDLGQLPVSLDFVLFRKQVTLTGLQELYQGKVLALPAEAEKRTEIRANG 269 Query: 119 QKIAKGEITIMEEDDTHFGVRVIE 142 I GE+ + D GV + E Sbjct: 270 ALIGYGELV---QLDNSLGVEITE 290 >gi|269302491|gb|ACZ32591.1| type III secretion apparatus protein, YscQ/HrcQ family [Chlamydophila pneumoniae LPCoLN] Length = 371 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 ++ + + + +S + L+ G +++L VDI ++ K+ +GEI + + G Sbjct: 309 RLVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LG 365 Query: 138 VRVIEI 143 +RV+E+ Sbjct: 366 IRVLEV 371 >gi|15618614|ref|NP_224900.1| type III secretion system protein [Chlamydophila pneumoniae CWL029] gi|15836236|ref|NP_300760.1| type III secretion system protein [Chlamydophila pneumoniae J138] gi|16752336|ref|NP_444594.1| type III secretion system protein [Chlamydophila pneumoniae AR39] gi|33242062|ref|NP_877003.1| type III secretion system protein [Chlamydophila pneumoniae TW-183] gi|4377007|gb|AAD18843.1| Flagellar Motor Switch Domain/YscQ family [Chlamydophila pneumoniae CWL029] gi|6672034|dbj|BAA88654.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae] gi|8163350|gb|AAF73618.1| type III secretion translocase SctQ [Chlamydophila pneumoniae AR39] gi|8979076|dbj|BAA98911.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae J138] gi|33236572|gb|AAP98660.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183] Length = 371 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 ++ + + + +S + L+ G +++L VDI ++ K+ +GEI + + G Sbjct: 309 RLVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDV---LG 365 Query: 138 VRVIEI 143 +RV+E+ Sbjct: 366 IRVLEV 371 >gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis audaxviator MP104C] gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis audaxviator MP104C] Length = 332 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 PV++ ++G + + +L+ L GDV+ L +RV + +D+ +++Q K + ++ + Sbjct: 259 PVELSAVVGESEITVQDLLQLQVGDVVPLSRRVTQDLDLYVSDQLKFKAQAGVLG---RY 315 Query: 136 FGVRVIEIL 144 V+V ++ Sbjct: 316 LAVQVTSLV 324 >gi|116872087|ref|YP_848868.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|315281359|ref|ZP_07869999.1| conserved domain protein [Listeria marthii FSL S4-120] gi|116740965|emb|CAK20085.1| flagellar motor switch protein, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|313614998|gb|EFR88502.1| conserved domain protein [Listeria marthii FSL S4-120] Length = 78 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 NIP+++ LG + +L+++ KG V L+ V ITI+ + I GEI Sbjct: 5 HNIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---K 61 Query: 133 DTHFGVRVIEI 143 D V++ ++ Sbjct: 62 DGKMFVKITKL 72 >gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110] gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110] Length = 80 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + V + ++LG+ M I ++ LS+G +I LD + V + NN +A G + + Sbjct: 7 VTVDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLV 60 >gi|269836614|ref|YP_003318842.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM 20745] gi|269785877|gb|ACZ38020.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM 20745] Length = 302 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 ++ + E+ + + + + +++ LG +++++L+ + GDVI LD ++ Sbjct: 207 FANPRAGVGEQLERDLAAQLERVSLAVRVELGRVTVRVADLLQVEVGDVIRLDTAADSAL 266 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 + + ++ G+ + VR++E + Sbjct: 267 PVLVEDRVRFLGQ---PGQIAGQLAVRIVERVT 296 >gi|221200569|ref|ZP_03573611.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2M] gi|221209244|ref|ZP_03582234.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2] gi|221170900|gb|EEE03357.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2] gi|221179910|gb|EEE12315.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2M] Length = 385 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + + + + + D + V ++ L M + L L G Sbjct: 280 MPLEPTRTDTPPATGTAHDASPADAPRALDGLA---VDLRFELPPTSMPLGELSALQPGA 336 Query: 101 VITLDKRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 VI L + + +SV + N I G + + + GVRV+ + Sbjct: 337 VIELQQGINQSVIHLVANGMLIGTGHLIAVGQ---KLGVRVVTLTQP 380 >gi|183600579|ref|ZP_02962072.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827] gi|188019856|gb|EDU57896.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827] Length = 308 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 + +I++ E ++ FD + + +K+ +LG + ++ L Sbjct: 194 QQEGQFMIEETIAPIADESALLQEETFSDEVVKPFD-VNAMTIKLTFVLGQTEITLNELA 252 Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ G V ++ + V + N Q IA+GE+ + E D G+ + Sbjct: 253 DIQPGAVYSIGENKEREVKVYANKQLIAEGELIYIGESDE-LGLEIT 298 >gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT] gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT] Length = 331 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 8/94 (8%) Query: 56 SDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++ LE S + MN+ + M ++LGS + I + LS GDVITLD V + Sbjct: 237 ENNTETLEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDVITLDSLTSSPVKV 296 Query: 115 TINN--QKIAKGEITIMEEDDTHFGVRVIEILNA 146 + N + + + GV++++I++ Sbjct: 297 VVGNEPYLLGR-----PGTIGKNRGVQILDIIDK 325 >gi|32454377|gb|AAP82990.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 303 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLVGNGELVQMNDT---LGVEIHEWLSE 298 >gi|213615825|ref|ZP_03371651.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 158 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S + T + + + IP ++ +G ++I L L G+V+ + Sbjct: 59 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGNVLPVGG 117 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 118 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 149 >gi|83716524|ref|YP_438950.1| surface presentation of antigens domain-containing protein [Burkholderia thailandensis E264] gi|257142054|ref|ZP_05590316.1| surface presentation of antigens domain-containing protein [Burkholderia thailandensis E264] gi|83650349|gb|ABC34413.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia thailandensis E264] Length = 423 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIMNIPVKM 79 D+P D+ SP + + + + ++P + S + + + ++ + + Sbjct: 296 DSPA-DSRGDSPADPLADSLADSPAGSPADPQADSSLDSSSDAPCCAPEPADLGDVELPV 354 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138 + L + + I+ L L G V+ L V + Q I G + + H GV Sbjct: 355 HVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVAVG---AHLGV 411 Query: 139 RV 140 R+ Sbjct: 412 RI 413 >gi|313634375|gb|EFS00970.1| conserved domain protein [Listeria seeligeri FSL N1-067] Length = 78 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+++ LG I++L+++ KG V L+ V V ITI+ + I GEI D Sbjct: 7 IPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILT---KDG 63 Query: 135 HFGVRVIEI 143 V++ ++ Sbjct: 64 KMFVKITKL 72 >gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 229 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 Q+ND + + + + E + L +PV + IL + + L + +G+VI Sbjct: 126 QENDDGDDAGNENKVHEHHPEDQKKSSSLCAQVPVTLTFILQKNKVTVEKLEKMYEGEVI 185 Query: 103 TLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L+ + E ++I NN +IA+G++ ME + GV + ++ ++ Sbjct: 186 PLEPSIEERIEIRANNVRIARGKLLGME--NGALGVELTQLYQSK 228 >gi|170704156|ref|ZP_02894757.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria IOP40-10] gi|170130934|gb|EDS99660.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria IOP40-10] Length = 193 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + P ++ + + + + D + V ++ L + + L L G VI L Sbjct: 93 EPTRTDTPSATTHDASADDAPRSLDGLA---VDLRFELPPTSIPLGELGALQPGAVIELQ 149 Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + +SV + N I G++ + + GVRV+ + Sbjct: 150 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 188 >gi|293406355|ref|ZP_06650281.1| type III secretion inner membrane protein [Escherichia coli FVEC1412] gi|291426361|gb|EFE99393.1| type III secretion inner membrane protein [Escherichia coli FVEC1412] Length = 308 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + ++PVK++ +LG M + + +L +I+L ++++I +N Sbjct: 223 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 282 Query: 123 KGEITIMEEDDTHFGVRV 140 GE+ +++ GV + Sbjct: 283 YGELVEVDD---KLGVEI 297 >gi|261344592|ref|ZP_05972236.1| putative surface presentation of antigens protein [Providencia rustigianii DSM 4541] gi|282567506|gb|EFB73041.1| putative surface presentation of antigens protein [Providencia rustigianii DSM 4541] Length = 309 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 EP +++ + ++ VK+ +LG + ++ L ++ G + ++ + Sbjct: 210 DEPTNTEMEEAFVDEAARPFNVNDLTVKLTFVLGHSEVSLAELNHMQPGTIFSIGENKER 269 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 V + N Q A+GE+T + E + G+ + +++ Sbjct: 270 EVKVYANKQLFAEGELTYIGESEE-LGLEITRLVS 303 >gi|187919911|ref|YP_001888942.1| surface presentation of antigens (SPOA) protein [Burkholderia phytofirmans PsJN] gi|187718349|gb|ACD19572.1| surface presentation of antigens (SPOA) protein [Burkholderia phytofirmans PsJN] Length = 327 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 52/107 (48%), Gaps = 9/107 (8%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ--IILGSCCMQISNLVNLS 97 +L + I++P+ D+N E ++ +LI + ++G+ + + L+ L Sbjct: 217 LLQPSGEYMVIAQPMIDDANQSAEMTS---ELIPASALTFSFDAVIGTLSLTLDELMRLR 273 Query: 98 KGDVITLDKRVG-ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 G ++L + VG ++ + A+GE+ +++ GVR++++ Sbjct: 274 TGSTVSLQQPVGRHAIRLLCQGIPFARGELIDIDDA---LGVRIVDL 317 >gi|300898066|ref|ZP_07116434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 198-1] gi|300358204|gb|EFJ74074.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 198-1] Length = 239 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + ++PVK++ +LG M + + +L +I+L ++++I +N Sbjct: 154 ENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 213 Query: 123 KGEITIMEEDDTHFGVRV 140 GE+ +++ GV + Sbjct: 214 YGELVEVDD---KLGVEI 228 >gi|148380702|ref|YP_001255243.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 3502] gi|153934250|ref|YP_001384986.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 19397] gi|153934570|ref|YP_001388456.1| flagellar motor switch protein FliM [Clostridium botulinum A str. Hall] gi|170761147|ref|YP_001788060.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str. Loch Maree] gi|226950156|ref|YP_002805247.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str. Kyoto] gi|148290186|emb|CAL84305.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 3502] gi|152930294|gb|ABS35794.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 19397] gi|152930484|gb|ABS35983.1| flagellar motor switch protein FliM [Clostridium botulinum A str. Hall] gi|169408136|gb|ACA56547.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str. Loch Maree] gi|226842452|gb|ACO85118.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str. Kyoto] gi|322807053|emb|CBZ04627.1| flagellar motor switch protein FliM [Clostridium botulinum H04402 065] Length = 331 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +D +I + S+ + I + +++ LG + + + L+ GDV+ LD R E V Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVALDTRTEEPVH 295 Query: 114 ITI 116 + I Sbjct: 296 LLI 298 >gi|300906598|ref|ZP_07124289.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 84-1] gi|301303010|ref|ZP_07209137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 124-1] gi|300401637|gb|EFJ85175.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 84-1] gi|300841674|gb|EFK69434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 124-1] gi|315256735|gb|EFU36703.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 85-1] Length = 315 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + + L +I+L ++++I Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|134282102|ref|ZP_01768808.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] gi|134246631|gb|EBA46719.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] Length = 331 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNILEKSTDNFDLIMN 74 EG ++ ++ PL D+ + + + S D EP ++ + + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDASHDEPTAAHAPPAF-----DIDAL-- 256 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 257 -PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 312 >gi|310823556|ref|YP_003955914.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella aurantiaca DW4/3-1] gi|309396628|gb|ADO74087.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella aurantiaca DW4/3-1] Length = 379 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +PV+++I L + +S L L G ++ L V E V + + ++ +A+ E+ + D Sbjct: 312 LPVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELV---DIDG 368 Query: 135 HFGVRVIEIL 144 G R++ +L Sbjct: 369 EIGARILSLL 378 >gi|114765265|ref|ZP_01444397.1| Flagellar motor switch protein fliM [Pelagibaca bermudensis HTCC2601] gi|114542400|gb|EAU45428.1| Flagellar motor switch protein fliM [Roseovarius sp. HTCC2601] Length = 313 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D++ + V M ++G + + +++ + G V+ L +V + V + ++IA+ E + Sbjct: 229 DMLGSTNVPMSAVMGQAVLPMRDVLAWAPGQVLDLGIQVDDPVTLCCAGKEIARAE--VG 286 Query: 130 EEDDTHFGVRVIE 142 + +++ E Sbjct: 287 HRKNGRIALKLSE 299 >gi|213023716|ref|ZP_03338163.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 140 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 V +I ++S S + T + + + IP ++ +G ++I L L GDV+ + Sbjct: 41 VQDIETLLASGSPMLKSDGTSSVE-LEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGG 99 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V I +N++ I +GE+ F VR+ Sbjct: 100 CFAPEVTIRVNDRIIGQGELIA---CGNEFMVRIT 131 >gi|258514031|ref|YP_003190253.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans DSM 771] gi|257777736|gb|ACV61630.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans DSM 771] Length = 334 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 26/45 (57%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + + + G + + + + L +GDV+TLD+R+ E VD+ + + Sbjct: 261 ELTLTAVAGETKISVRDFLQLQEGDVLTLDRRIDEDVDLFLEEKL 305 >gi|171323088|ref|ZP_02911720.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171091517|gb|EDT37147.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 193 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + P ++ + + + + D + V ++ L + + L L G VI L Sbjct: 93 EPTRTDTPSATTHDASADDAPRSLDGLA---VDLRFELPPTSIPLGELGALQPGAVIELQ 149 Query: 106 KRVGESV-DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + +SV + N I G++ + + GVRV+ + Sbjct: 150 QGINQSVIHLVANGMLIGTGQLIAVGQ---KLGVRVVTLTQP 188 >gi|254519440|ref|ZP_05131496.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA] gi|226913189|gb|EEH98390.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA] Length = 331 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 8/94 (8%) Query: 56 SDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 +D + + +++ + ++ + V M + LG + + + + L GDV+ L+ + + V + Sbjct: 237 TDESELEDEAREKLKKGLDPVKVNMHVELGKTEITVDDFLELVNGDVLVLNSQYSDPVRV 296 Query: 115 TINNQ--KIAKGEITIMEEDDTHFGVRVIEILNA 146 + N+ IAK I + G+++++IL+ Sbjct: 297 FVENEECFIAKPGIV-----GKNMGIQLLDILDK 325 >gi|259908639|ref|YP_002648995.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|224964261|emb|CAX55768.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|283478611|emb|CAY74527.1| Surface presentation of antigens protein SpaO [Erwinia pyrifoliae DSM 12163] Length = 308 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P++++ +L S ++ L + G L++ + V I +N + A+GE+ ++ + Sbjct: 227 DLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKIYLNRKFFARGELVALD--N 284 Query: 134 THFGVRVIEI 143 + V + +I Sbjct: 285 GNLAVEIRQI 294 >gi|115379115|ref|ZP_01466239.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|115363898|gb|EAU63009.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] Length = 342 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +PV+++I L + +S L L G ++ L V E V + + ++ +A+ E+ + D Sbjct: 275 LPVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELV---DIDG 331 Query: 135 HFGVRVIEIL 144 G R++ +L Sbjct: 332 EIGARILSLL 341 >gi|54124953|gb|AAV30221.1| AscQ [Aeromonas hydrophila] Length = 308 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 60 NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 N + + +PV++ +G + L L G +I L + V I N Sbjct: 222 NAAPDDALDPSQLEGLPVQVTFEVGRQTLDWHTLTTLQPGSLIDLGAPIDGEVRIISNGH 281 Query: 120 KIAKGEITIMEEDDTHFGVRV 140 + G + E GVRV Sbjct: 282 LLGNGRLV---EIQGRLGVRV 299 >gi|154250207|ref|YP_001411032.1| flagellar motor switch protein FliM [Fervidobacterium nodosum Rt17-B1] gi|154154143|gb|ABS61375.1| flagellar motor switch protein FliM [Fervidobacterium nodosum Rt17-B1] Length = 329 Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 59 NNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + ++ +N L I + + +G + + ++ L GDVI L + E + I +N Sbjct: 240 KEVTQELVENLKLNIKKAKLDVIAKIGETKLTLGEILTLEVGDVIRLREHYDEPIKIEVN 299 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + G+ + ++ V++ +++ Sbjct: 300 GKTKFLGK---PGQFKGNYAVKITKVIEE 325 >gi|310767461|gb|ADP12411.1| Type III secretion apparatus [Erwinia sp. Ejp617] Length = 308 Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P++++ +L S ++ L + G L++ + V I +N + A+GE+ ++ + Sbjct: 227 DLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKIYLNRKFFARGELVALD--N 284 Query: 134 THFGVRVIEI 143 + V + +I Sbjct: 285 GNLAVEIRQI 294 >gi|254193852|ref|ZP_04900284.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] gi|169650603|gb|EDS83296.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] Length = 428 Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 328 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 387 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 388 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 418 >gi|167567223|ref|ZP_02360139.1| RhcQ protein [Burkholderia oklahomensis EO147] Length = 104 Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 51 SEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 S SD ++ + N L+ +IP+ + ++G + L +++ GDV+ L + Sbjct: 7 SAQSQSDEPRFEQEPSRNGKADPSLLDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGR 66 Query: 107 RVGESVDITINNQKIAKGEITIME 130 V I + I GE + Sbjct: 67 NPHGQVSIEAHGVMIGYGEFVEIG 90 >gi|16802740|ref|NP_464225.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|46906949|ref|YP_013338.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091660|ref|ZP_00229456.1| flagellar motor switch protein, putative [Listeria monocytogenes str. 4b H7858] gi|47095264|ref|ZP_00232875.1| flagellar motor switch protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|217965204|ref|YP_002350882.1| hypothetical protein LMHCC_1927 [Listeria monocytogenes HCC23] gi|224498780|ref|ZP_03667129.1| flagellar motor switch protein [Listeria monocytogenes Finland 1988] gi|224501997|ref|ZP_03670304.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|226223329|ref|YP_002757436.1| flagellar switch protein [Listeria monocytogenes Clip81459] gi|254824022|ref|ZP_05229023.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|254829355|ref|ZP_05234042.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|254830311|ref|ZP_05234966.1| flagellar motor switch protein [Listeria monocytogenes 10403S] gi|254853098|ref|ZP_05242446.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|254900066|ref|ZP_05259990.1| flagellar motor switch protein [Listeria monocytogenes J0161] gi|254911381|ref|ZP_05261393.1| flagellar motor switch protein [Listeria monocytogenes J2818] gi|254932022|ref|ZP_05265381.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|254935708|ref|ZP_05267405.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|254994392|ref|ZP_05276582.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-064] gi|255027497|ref|ZP_05299483.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003] gi|255030383|ref|ZP_05302334.1| flagellar motor switch protein [Listeria monocytogenes LO28] gi|255521911|ref|ZP_05389148.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175] gi|284801028|ref|YP_003412893.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994170|ref|YP_003415938.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|290893995|ref|ZP_06556970.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|300764510|ref|ZP_07074503.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017] gi|16410087|emb|CAC98776.1| lmo0698 [Listeria monocytogenes EGD-e] gi|46880215|gb|AAT03515.1| putative flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47016335|gb|EAL07257.1| flagellar motor switch protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|47019979|gb|EAL10716.1| flagellar motor switch protein, putative [Listeria monocytogenes str. 4b H7858] gi|217334474|gb|ACK40268.1| conserved domain protein [Listeria monocytogenes HCC23] gi|225875791|emb|CAS04494.1| Putative flagellar switch protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601768|gb|EEW15093.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258606447|gb|EEW19055.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|258608291|gb|EEW20899.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|284056590|gb|ADB67531.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059637|gb|ADB70576.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|290556441|gb|EFD89980.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|293583574|gb|EFF95606.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293589318|gb|EFF97652.1| flagellar motor switch protein [Listeria monocytogenes J2818] gi|293593250|gb|EFG01011.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|300514864|gb|EFK41918.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017] gi|307570237|emb|CAR83416.1| flagellar motor switch protein, putative [Listeria monocytogenes L99] gi|313610116|gb|EFR85439.1| conserved domain protein [Listeria monocytogenes FSL F2-208] gi|313620067|gb|EFR91580.1| conserved domain protein [Listeria innocua FSL S4-378] gi|328467264|gb|EGF38344.1| flagellar motor switch protein [Listeria monocytogenes 1816] gi|328475660|gb|EGF46409.1| flagellar motor switch protein [Listeria monocytogenes 220] gi|332311123|gb|EGJ24218.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 78 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+++ LG + +L+++ KG V L+ V ITI+ + I GEI D Sbjct: 7 IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---KDG 63 Query: 135 HFGVRVIEI 143 V++ ++ Sbjct: 64 KMFVKITKL 72 >gi|254186718|ref|ZP_04893234.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] gi|157934402|gb|EDO90072.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] Length = 428 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 328 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 387 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 388 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 418 >gi|168699681|ref|ZP_02731958.1| hypothetical protein GobsU_09169 [Gemmata obscuriglobus UQM 2246] Length = 283 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 +S P++ + +E V+M +ILG + + ++ +L+ GDVI D++V Sbjct: 195 GLSPPVTPAPKSEIESVVRAMS------VEMSVILGRADLTMRDVSDLTTGDVIVFDQKV 248 Query: 109 GESVDITINN 118 E +D ++ Sbjct: 249 TEPLDGLVSG 258 >gi|76819487|ref|YP_335588.1| SctQ [Burkholderia pseudomallei 1710b] gi|76583960|gb|ABA53434.1| SctQ [Burkholderia pseudomallei 1710b] Length = 435 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 335 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 394 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 395 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 425 >gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum BKT015925] gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum BKT015925] Length = 331 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 8/94 (8%) Query: 56 SDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + LE+S + MN+ + M+ +LGS + + + LS GDV+TLD V + Sbjct: 237 ENDTDTLEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDVVTLDALTSSPVKM 296 Query: 115 TINNQ--KIAKGEITIMEEDDTHFGVRVIEILNA 146 + NQ +AK + GV++++I++ Sbjct: 297 MVGNQPYLLAK-----PGTMGKNRGVQILDIIDK 325 >gi|255023254|ref|ZP_05295240.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208] Length = 78 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+++ LG + +L+++ KG V L+ V ITI+ + I GEI D Sbjct: 7 IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---KDG 63 Query: 135 HFGVRVIEI 143 V++ ++ Sbjct: 64 KMFVKITKL 72 >gi|4206077|gb|AAD11410.1| SctQ [Burkholderia pseudomallei] Length = 310 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 210 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 269 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 270 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 300 >gi|224584669|ref|YP_002638467.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469196|gb|ACN47026.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 299 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 208 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 267 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 268 NGVLLGNGELVQMNDT---LGVEIHEWLSE 294 >gi|167724021|ref|ZP_02407257.1| SctQ [Burkholderia pseudomallei DM98] Length = 359 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|32454381|gb|AAP82992.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 303 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|62181393|ref|YP_217810.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129026|gb|AAX66729.1| surface presentation of antigens; secretory proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715877|gb|EFZ07448.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 303 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|167850203|ref|ZP_02475711.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei B7210] gi|254193901|ref|ZP_04900333.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] gi|169650652|gb|EDS83345.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] Length = 327 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S D EP ++ + + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHD---EPTAAHAPPAF-----DIDAL--- 252 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 253 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 308 >gi|188534037|ref|YP_001907834.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] gi|188029079|emb|CAO96947.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 309 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++ V+++ +L S ++ L + G ++ L++ + V I +N + A+GE+ +E Sbjct: 227 DLSVEIEFVLDSKSYTLTELDAIHPGMILPLNQDAEKRVKIYLNKKFFARGELVALE--S 284 Query: 134 THFGVRVIEI 143 + V + +I Sbjct: 285 GNLAVEINQI 294 >gi|167923137|ref|ZP_02510228.1| SctQ [Burkholderia pseudomallei BCC215] gi|217425374|ref|ZP_03456868.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] gi|217391625|gb|EEC31653.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] Length = 359 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|53722430|ref|YP_111415.1| type III secretion-associated protein [Burkholderia pseudomallei K96243] gi|52212844|emb|CAH38878.1| putative type III secretion-associated protein [Burkholderia pseudomallei K96243] Length = 310 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 210 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 269 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 270 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 300 >gi|167820161|ref|ZP_02451841.1| SctQ [Burkholderia pseudomallei 91] Length = 359 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|48479064|gb|AAT44855.1| putative type III secretory pathway and flagellar biosynthesis protein [Burkholderia pseudomallei] Length = 310 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 210 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 269 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 270 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 300 >gi|323143898|ref|ZP_08078560.1| putative type III secretion apparatus protein, YscQ/HrcQ family [Succinatimonas hippei YIT 12066] gi|322416325|gb|EFY06997.1| putative type III secretion apparatus protein, YscQ/HrcQ family [Succinatimonas hippei YIT 12066] Length = 315 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 49/115 (42%), Gaps = 7/115 (6%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 + +P + +Q + ++ + S D E+ I ++ + + L S + Sbjct: 208 EGLQAPAQYNAEQLQITLLSSLQKTDSGDDMADSEE----LTTIEDVELTINFSLESIKL 263 Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +S++ L++G V+ L+ E++ + + + I G I + + +++ I Sbjct: 264 PLSSIKELTEGSVLDLNNSALENIAVKLEGKTIGYGRIIEVGGKN---ALQITRI 315 >gi|188586031|ref|YP_001917576.1| flagellar motor switch protein FliM [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350718|gb|ACB84988.1| flagellar motor switch protein FliM [Natranaerobius thermophilus JW/NM-WN-LF] Length = 333 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E+S + + V ++ L + + +NL +GDVI+L+K +D+ + + Sbjct: 246 EESQALKNRLHKTQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKF 305 Query: 123 KGEITIMEEDDTHFGVRVIEIL 144 KG+ V++ +I+ Sbjct: 306 KGK---PGSIKNKLAVQITQIV 324 >gi|126457706|ref|YP_001075941.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|167849994|ref|ZP_02475502.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei B7210] gi|242313295|ref|ZP_04812312.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] gi|126231474|gb|ABN94887.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|242136534|gb|EES22937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] Length = 359 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|167906945|ref|ZP_02494150.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei NCTC 13177] Length = 359 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S ++ +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASADLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|161615803|ref|YP_001589768.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168261986|ref|ZP_02683959.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|161365167|gb|ABX68935.1| hypothetical protein SPAB_03594 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205349239|gb|EDZ35870.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 303 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|38639350|gb|AAR25816.1| BcscQ [Burkholderia multivorans E243] Length = 383 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV-DITINNQKIAKGEITIMEEDDTH 135 V ++ L M + L L G VI L + +SV + N I G++ + + Sbjct: 311 VDLRFELPPTSMPLGELGTLQPGAVIELSHGINQSVIHLVANGMLIGTGQLIAVGQ---K 367 Query: 136 FGVRVIEILNA 146 GVRV+ + Sbjct: 368 LGVRVVTLTPP 378 >gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] Length = 331 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Query: 54 ISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 +IL +S + ++I V++ ILG+ + + +NL+ GDV+TL ++ V Sbjct: 235 FQDSDEDILNESREKLRNRLDIVDVELTAILGTVDVTVQEFLNLNVGDVLTLKEKTTSPV 294 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + ++ G+ ++++ + GV +++IL+ Sbjct: 295 KLMVEDKVYYYGKPGVIDK---NMGVEILDILDK 325 >gi|167742990|ref|ZP_02415764.1| SctQ [Burkholderia pseudomallei 14] gi|167828536|ref|ZP_02460007.1| SctQ [Burkholderia pseudomallei 9] gi|167898603|ref|ZP_02486004.1| SctQ [Burkholderia pseudomallei 7894] gi|226199135|ref|ZP_03794697.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] gi|254264504|ref|ZP_04955369.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] gi|225928910|gb|EEH24935.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] gi|254215506|gb|EET04891.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] Length = 359 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|254301601|ref|ZP_04969045.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] gi|157811292|gb|EDO88462.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] Length = 359 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|237509496|ref|ZP_04522211.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] gi|235001701|gb|EEP51125.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] Length = 359 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASAGLGVVATDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|254183804|ref|ZP_04890396.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] gi|184214337|gb|EDU11380.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] Length = 359 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASAGLGVVATDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|168820412|ref|ZP_02832412.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342820|gb|EDZ29584.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087296|emb|CBY97061.1| Surface presentation of antigens protein spaO [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 303 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|168242628|ref|ZP_02667560.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168463974|ref|ZP_02697891.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194450652|ref|YP_002046851.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200389219|ref|ZP_03215831.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238909658|ref|ZP_04653495.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194408956|gb|ACF69175.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633160|gb|EDX51574.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199606317|gb|EDZ04862.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205338000|gb|EDZ24764.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 303 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|167915304|ref|ZP_02502395.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 112] Length = 347 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 247 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 306 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 307 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 337 >gi|197247897|ref|YP_002147788.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211600|gb|ACH48997.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 303 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|56414843|ref|YP_151918.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363771|ref|YP_002143408.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|32454369|gb|AAP82986.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454371|gb|AAP82987.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454379|gb|AAP82991.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|56129100|gb|AAV78606.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|189490720|gb|ACE00521.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267491|gb|ACF35726.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267493|gb|ACF35727.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267495|gb|ACF35728.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267497|gb|ACF35729.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267499|gb|ACF35730.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267501|gb|ACF35731.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267503|gb|ACF35732.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267505|gb|ACF35733.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267507|gb|ACF35734.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267509|gb|ACF35735.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267511|gb|ACF35736.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267513|gb|ACF35737.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267515|gb|ACF35738.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267517|gb|ACF35739.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267519|gb|ACF35740.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267521|gb|ACF35741.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267523|gb|ACF35742.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267525|gb|ACF35743.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267527|gb|ACF35744.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267529|gb|ACF35745.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267531|gb|ACF35746.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267533|gb|ACF35747.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267535|gb|ACF35748.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267537|gb|ACF35749.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267539|gb|ACF35750.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267541|gb|ACF35751.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267543|gb|ACF35752.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267545|gb|ACF35753.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|197095248|emb|CAR60799.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 303 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|16766197|ref|NP_461812.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550260|ref|ZP_02344017.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993126|ref|ZP_02574221.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230961|ref|ZP_02656019.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471466|ref|ZP_03077450.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197264022|ref|ZP_03164096.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|730795|sp|P40699|SPAO_SALTY RecName: Full=Surface presentation of antigens protein SpaO gi|404290|emb|CAA51924.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium] gi|973261|gb|AAC43965.1| SpaO [Salmonella enterica subsp. enterica serovar Senftenberg] gi|975774|gb|AAC43863.1| SpaO [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421439|gb|AAL21771.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194457830|gb|EDX46669.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197242277|gb|EDY24897.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205324834|gb|EDZ12673.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328724|gb|EDZ15488.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334615|gb|EDZ21379.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|261248027|emb|CBG25860.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995019|gb|ACY89904.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159450|emb|CBW18968.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913909|dbj|BAJ37883.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223440|gb|EFX48506.1| Surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131243|gb|ADX18673.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989763|gb|AEF08746.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 303 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|194442226|ref|YP_002042132.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198245837|ref|YP_002216860.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353834|ref|YP_002227635.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858153|ref|YP_002244804.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|60415909|sp|P0A1K7|SPAO_SALDU RecName: Full=Surface presentation of antigens protein SpaO gi|60415910|sp|P0A1K8|SPAO_SALEN RecName: Full=Surface presentation of antigens protein SpaO gi|973257|gb|AAC43935.1| SpaO [Salmonella enterica subsp. enterica serovar Dublin] gi|973265|gb|AAC43962.1| SpaO [Salmonella enterica subsp. enterica serovar Gallinarum] gi|975778|gb|AAC43854.1| SpaO [Salmonella enterica subsp. enterica serovar Enteritidis] gi|194400889|gb|ACF61111.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197940353|gb|ACH77686.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273615|emb|CAR38602.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709956|emb|CAR34310.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326628943|gb|EGE35286.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 303 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|134282546|ref|ZP_01769250.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] gi|134246103|gb|EBA46193.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] Length = 337 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S + +TD I + + +Q + + + I L L G VI L V Sbjct: 237 SMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 296 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 297 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 327 >gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] Length = 328 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +P+ +Q ++G + + ++NL +GDVI L+ + + I + + +G I + Sbjct: 255 VPLTVQAVIGEAWLTLREVLNLQEGDVIRLNTHYKDEIRIDVEGKPKFRG---IPGKYKG 311 Query: 135 HFGVRVI 141 + V++ Sbjct: 312 KYAVKIT 318 >gi|83717115|ref|YP_439032.1| type III secretion system protein BsaV [Burkholderia thailandensis E264] gi|167615589|ref|ZP_02384224.1| type III secretion system protein BsaV [Burkholderia thailandensis Bt4] gi|257142140|ref|ZP_05590402.1| type III secretion system protein BsaV [Burkholderia thailandensis E264] gi|83650940|gb|ABC35004.1| type III secretion system protein BsaV [Burkholderia thailandensis E264] Length = 320 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 4/94 (4%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 E L + D+ P ++D+ + D + PV ++ +L + ++ L Sbjct: 212 EPLAEHAIDDSHDSPATADAPPDASPPAFDIDAL---PVTLEFVLQDERVTVAQLAGCHP 268 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 G V+ L GE V I N Q GE+ + + Sbjct: 269 GLVLPLRGVPGE-VTIRANGQPFGIGELIQVGDQ 301 >gi|313624713|gb|EFR94668.1| conserved domain protein [Listeria innocua FSL J1-023] Length = 78 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+++ LG + +L+++ KG V L+ V ITI+ + I GEI D Sbjct: 7 IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILT---KDG 63 Query: 135 HFGVRVIEI 143 V++ ++ Sbjct: 64 KMFVKITKL 72 >gi|124516745|gb|EAY58253.1| Flagellar motor switch protein FliM [Leptospirillum rubarum] Length = 338 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAK 123 P++++ +G + +++ GDV +LD+ V E V++ + + +A+ Sbjct: 258 PLEIEAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLAR 307 >gi|15834668|ref|NP_296427.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270284833|ref|ZP_06194227.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270288862|ref|ZP_06195164.1| type III secretion system protein [Chlamydia muridarum Weiss] gi|301336213|ref|ZP_07224415.1| type III secretion system protein [Chlamydia muridarum MopnTet14] gi|8163109|gb|AAF73521.1| type III secretion translocase SctQ [Chlamydia muridarum Nigg] Length = 373 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDT 134 K+ + + + + L G ++ + VDI +N K+ +G I +++ Sbjct: 310 KIVAEVARYTLSVGEFLKLEPGSILHFEGM--HPTLGVDIILNGAKVGRGNIIALQDV-- 365 Query: 135 HFGVRVIEI 143 G+RV+E+ Sbjct: 366 -LGIRVLEV 373 >gi|167615480|ref|ZP_02384115.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia thailandensis Bt4] Length = 205 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIMNIPVKM 79 D+P D+ SP + + + + ++P + S + + + ++ + + Sbjct: 78 DSPA-DSRGDSPADPLADSLADSPAGSPADPQADSSLDSSSDAPCCAPEPADLGDVELPV 136 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138 + L + + I+ L L G V+ L V + Q I G + + H GV Sbjct: 137 HVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVAVG---AHLGV 193 Query: 139 RV 140 R+ Sbjct: 194 RI 195 >gi|167577332|ref|ZP_02370206.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia thailandensis TXDOH] Length = 226 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIMNIPVKM 79 D+P D+ SP + + + + ++P + S + + + ++ + + Sbjct: 99 DSPA-DSRGDSPADPLADSLADSPAGSPADPQADSSLDSSSDAPCCAPEPADLGDVELPV 157 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138 + L + + I+ L L G V+ L V + Q I G + + H GV Sbjct: 158 HVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVAVG---AHLGV 214 Query: 139 RV 140 R+ Sbjct: 215 RI 216 >gi|167574751|ref|ZP_02367625.1| RhcQ protein [Burkholderia oklahomensis C6786] Length = 104 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 51 SEPISSDSNNILEKSTDN----FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 S SD ++ + N L+ +IP+ + ++G + L +++ GDV+ L + Sbjct: 7 SAQSQSDEPRFEQEPSRNGKADPSLLDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGR 66 Query: 107 RVGESVDITINNQKIAKGEITIME 130 V I + I GE + Sbjct: 67 NPHGQVSIEAHGVTIGYGEFVEIG 90 >gi|168235931|ref|ZP_02660989.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738216|ref|YP_002115843.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713718|gb|ACF92939.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290676|gb|EDY30030.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 303 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] Length = 352 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 34/64 (53%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++++ ++ + L+ V + +LG + + ++ L GD++ LD+ ++V I Sbjct: 239 SETSSKKSRNKELQALLGGAKVNVTAMLGETKLTLREILELESGDIVRLDRPADDTVIIN 298 Query: 116 INNQ 119 ++ + Sbjct: 299 VDGR 302 >gi|204928363|ref|ZP_03219563.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322685|gb|EDZ07882.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614291|gb|EFY11222.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621645|gb|EFY18498.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624506|gb|EFY21339.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628837|gb|EFY25620.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633436|gb|EFY30178.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635988|gb|EFY32696.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639696|gb|EFY36381.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646879|gb|EFY43382.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650647|gb|EFY47052.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654740|gb|EFY51059.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658961|gb|EFY55214.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664472|gb|EFY60666.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668279|gb|EFY64436.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673741|gb|EFY69842.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677802|gb|EFY73865.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681368|gb|EFY77400.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683770|gb|EFY79780.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193841|gb|EFZ79044.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200311|gb|EFZ85393.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203186|gb|EFZ88215.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205567|gb|EFZ90532.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210078|gb|EFZ94981.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216381|gb|EGA01108.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221128|gb|EGA05559.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226950|gb|EGA11132.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230766|gb|EGA14884.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234883|gb|EGA18969.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238922|gb|EGA22972.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241622|gb|EGA25653.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248231|gb|EGA32167.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251185|gb|EGA35058.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256069|gb|EGA39807.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263204|gb|EGA46742.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264293|gb|EGA47799.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271119|gb|EGA54547.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 303 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|319795615|ref|YP_004157255.1| type III secretion system apparatus protein yscq/hrcq [Variovorax paradoxus EPS] gi|315598078|gb|ADU39144.1| type III secretion system apparatus protein YscQ/HrcQ [Variovorax paradoxus EPS] Length = 379 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLV 94 S + IQ++ + + ++ ++ D + + V ++ +G + + L Sbjct: 268 AEGSRITIQQSLHSAMKQDPAAPIAAAESGASLPIDRLDALEVMLRFEVGDIELSLGELK 327 Query: 95 NLSKGDVITLDKRVG-ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L G V L + + + I + + KG + + + GVRV E + Sbjct: 328 ALRPGHVFDLGQPLNRSPIRILAHGNVLGKGYLVAVGD---RLGVRVSEFAPGE 378 >gi|86157133|ref|YP_463918.1| surface presentation of antigens (SPOA) protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773644|gb|ABC80481.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter dehalogenans 2CP-C] Length = 324 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D + T+ + +PV +++ L + ++ + L G V+ L+ V + + Sbjct: 237 DGEGFHVEETEMIERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRL 296 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143 + +A+GE+ + + GVR++ + Sbjct: 297 GERAVARGELV---DVEGAVGVRILSL 320 >gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] Length = 323 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 ++N+ V +Q+ LG + + +L+NL GD + LD +V + +D+ I ++ G + Sbjct: 252 VLNVMVNLQVCLGHMHIPLRDLINLRVGDTLLLDTKVDKPLDVKIEKKQKFLG---VPGR 308 Query: 132 DDTHFGVRVIEIL 144 + +++ E+L Sbjct: 309 VGKNLAIKITEVL 321 >gi|126442929|ref|YP_001062994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] gi|126222420|gb|ABN85925.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] Length = 359 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + S +TD I + + +Q + + + I L L G VI L V Sbjct: 259 SMSEEVDQASAGFGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAV 318 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + + ++ Q + GE+ + E H GVR+I Sbjct: 319 TDARLRLVVHGQTVGYGELVAVGE---HLGVRII 349 >gi|89111158|dbj|BAE80248.1| HrcQ [Acidovorax avenae subsp. avenae] Length = 309 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73 +L+ + + Q + + S + I E S++ I Sbjct: 169 DLDDSEIALHAAPQADAFADLDDGSGEPASASAGAEIPEDAGSEAAPPATPLP--LADIG 226 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEED 132 I V + I + + +++ L L G V+ L ++ V + + Q + G + ++ E Sbjct: 227 GIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVVIGE- 285 Query: 133 DTHFGVRV 140 + GVR+ Sbjct: 286 --NLGVRI 291 >gi|39545586|gb|AAR27893.1| AscQ [Aeromonas hydrophila] Length = 307 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%) Query: 57 DSNNILEKSTDNFDL--IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + + DN D + N+P+++ +G + +L L G +I L + V I Sbjct: 216 ELTAMHNAADDNLDATQLDNLPIQVTFEVGRQTLDWHSLTTLQPGSLIDLGTPIDGEVRI 275 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRV 140 N ++ G + E GVRV Sbjct: 276 ISNGHQLGSGRLV---EIQGRLGVRV 298 >gi|253988530|ref|YP_003039886.1| type III secretion system protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637888|emb|CAR66517.1| type iii secretion component protein sctq [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779980|emb|CAQ83141.1| type iii secretion component protein sctq [Photorhabdus asymbiotica] Length = 309 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +SSDS N D + ++ + + +G + + L +L G ++ L V Sbjct: 221 LSSDSPNSTSPVPD----LNSLEIHVSFEVGRQTLDLHTLTSLQPGSLLDLGVPPDGEVR 276 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRV 140 I +N + + G + + GVRV Sbjct: 277 ILVNQKCLGSGRLV---DIQGRLGVRV 300 >gi|326624622|gb|EGE30967.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 261 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 170 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMA 229 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 230 NGVLLGNGELVQMNDT---LGVEIHEWLSE 256 >gi|317407760|gb|EFV87687.1| YscQ/HrcQ family type III secretion apparatus protein [Achromobacter xylosoxidans C54] Length = 396 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGS 85 + D + P+ Q + D+ ++ + D +PV++ LG Sbjct: 278 VSDEDGVFPSGAGGAGAQGFEARP-PREAGEDAGADVDGLEPSVDF-GQVPVRLGFDLGE 335 Query: 86 CCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + + L L+ G+V LD+ V + V I N ++ GE+ +E + GVR+ + Sbjct: 336 RLITLDRLRTLALGEVFELDRPVADGCVRIRANGMEVGLGELVEVE---GNIGVRLKSL 391 Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 24/33 (72%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 +PV+M+ +G+ + ++ L +L++GDV+ LD+ Sbjct: 202 LPVRMRAEVGASTLSLAELRSLAEGDVVFLDEH 234 >gi|167004217|ref|ZP_02269984.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20] gi|243060412|gb|EES42598.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20] Length = 331 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 10/118 (8%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNI-SEPISSDSNNILEKSTDNFDLIMN 74 EG ++ ++ PL D+ + + + S D EP ++ + + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDASHDTSHDEPTAAHAPPAF-----DIDAL-- 256 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + + L G V+ L GE V I N + +GE+ + E Sbjct: 257 -PVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 312 >gi|217425190|ref|ZP_03456685.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] gi|217391795|gb|EEC31822.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] Length = 323 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 16/117 (13%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S + P + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 248 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N + +GE+ + E Sbjct: 249 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 304 >gi|153940240|ref|YP_001392022.1| flagellar motor switch protein FliM [Clostridium botulinum F str. Langeland] gi|170756595|ref|YP_001782350.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str. Okra] gi|152936136|gb|ABS41634.1| flagellar motor switch protein FliM [Clostridium botulinum F str. Langeland] gi|169121807|gb|ACA45643.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str. Okra] gi|295320037|gb|ADG00415.1| flagellar motor switch protein FliM [Clostridium botulinum F str. 230613] Length = 331 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +D +I + S+ + I + +++ LG + + + L+ GDV+ L+ + E V Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVALETKTEEPVH 295 Query: 114 ITI 116 + I Sbjct: 296 LLI 298 >gi|16761668|ref|NP_457285.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143152|ref|NP_806494.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052435|ref|ZP_03345313.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419312|ref|ZP_03352378.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425707|ref|ZP_03358457.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580301|ref|ZP_03362127.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213649909|ref|ZP_03379962.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853009|ref|ZP_03382541.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829393|ref|ZP_06547005.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|2494557|sp|Q56022|SPAO_SALTI RecName: Full=Surface presentation of antigens protein SpaO gi|25354379|pir||AG0851 surface presentation of antigens protein (associated with type III secretion and virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|975770|gb|AAC43860.1| SpaO [Salmonella enterica subsp. enterica serovar Typhi] gi|16503969|emb|CAD05998.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138785|gb|AAO70354.1| antigen presentation protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32454373|gb|AAP82988.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454375|gb|AAP82989.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454383|gb|AAP82993.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 303 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L V +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum Ice1] gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum Ice1] Length = 331 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 10/94 (10%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 S + LE + + + V + ++LG + +S L++L GDVI LD R Sbjct: 234 FSNAAKERTTEQLEALRNRLERAL---VPITVLLGRTTLSVSELLDLQLGDVIQLDNRAD 290 Query: 110 ESVDITINNQK--IAKGEITIMEEDDTHFGVRVI 141 +++ I + +A+ + G+++ Sbjct: 291 SELEVLIGQRVKYLAR-----PGLSGSKLGIQIT 319 >gi|283836562|ref|ZP_06356303.1| putative surface presentation of antigens protein [Citrobacter youngae ATCC 29220] gi|291067491|gb|EFE05600.1| putative surface presentation of antigens protein [Citrobacter youngae ATCC 29220] Length = 250 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 3/88 (3%) Query: 53 PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 I + + + +S + + ++ + + +G + + L +L GDV+T D + V Sbjct: 160 EIEQNVEDHIVQSHSPLNSLGDVRITLTFEVGCTSLTFAELASLKVGDVLTADVLLNNCV 219 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRV 140 + N A G + ++ + VR+ Sbjct: 220 KLRANGSVFASGNLLMLGDTP---AVRI 244 >gi|168180850|ref|ZP_02615514.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC 2916] gi|182668347|gb|EDT80326.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC 2916] Length = 331 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +D +I + S+ + I + +++ LG + + + L+ GDV+ L+ R E V Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVALETRTEEPVH 295 Query: 114 ITI 116 + I Sbjct: 296 LLI 298 >gi|220913720|ref|YP_002489029.1| surface presentation of antigens (SPOA) protein [Arthrobacter chlorophenolicus A6] gi|219860598|gb|ACL40940.1| surface presentation of antigens (SPOA) protein [Arthrobacter chlorophenolicus A6] Length = 298 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 26/51 (50%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + +PV + + L + + ++ L+ GDV+ L D+T+N ++A Sbjct: 225 VAQVPVDVAVQLARTSVTPAQILGLAVGDVLPLPHPENSPFDVTVNGTRLA 275 >gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252] gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252] Length = 348 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 + + I V+++ ++G +++S ++ L GDVI L++RV + V + I ++ + I Sbjct: 259 EQLEKIEVELRAVMGRTRIKLSEMMTLEVGDVIVLERRVNQPVQVYIGEREKFRA---IP 315 Query: 130 EEDDTHFGVRVIEIL 144 H +R++E++ Sbjct: 316 GRSGKHRALRILEVV 330 >gi|226195953|ref|ZP_03791539.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] gi|225931846|gb|EEH27847.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] Length = 327 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S D EP ++ + + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASRDTSHDTSHD---EPTAAHAPPAF-----DIDAL--- 252 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 253 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 308 >gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484] gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484] Length = 315 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E S + IP+ +++ILG +Q+ +L+N+ GD + L K + E V++ ++ A Sbjct: 237 EVSNKLLQALEEIPLNLEVILGRQKIQLGDLLNMKVGDTMILQKGLREPVEVRVSGVPKA 296 >gi|254973937|ref|ZP_05270409.1| putative flagellar motor switch protein [Clostridium difficile QCD-66c26] gi|255091323|ref|ZP_05320801.1| putative flagellar motor switch protein [Clostridium difficile CIP 107932] gi|255312981|ref|ZP_05354564.1| putative flagellar motor switch protein [Clostridium difficile QCD-76w55] gi|255515740|ref|ZP_05383416.1| putative flagellar motor switch protein [Clostridium difficile QCD-97b34] gi|255648834|ref|ZP_05395736.1| putative flagellar motor switch protein [Clostridium difficile QCD-37x79] gi|260682051|ref|YP_003213336.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260685649|ref|YP_003216782.1| putative flagellar motor switch protein [Clostridium difficile R20291] gi|306518949|ref|ZP_07405296.1| putative flagellar motor switch protein [Clostridium difficile QCD-32g58] gi|260208214|emb|CBA60573.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260211665|emb|CBE01935.1| putative flagellar motor switch protein [Clostridium difficile R20291] Length = 293 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 46 DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 + ++ E +D + E+ T + + NI + + +G + + +L+ L GDVI Sbjct: 193 ESISVIEFFDNDVGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252 Query: 105 DKRVGESVDITINN 118 +K++ + +DI + N Sbjct: 253 NKKINDYIDIFVEN 266 >gi|167828748|ref|ZP_02460219.1| type III secretion system protein BsaV [Burkholderia pseudomallei 9] Length = 294 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S D EP ++ + + D + Sbjct: 171 EGENIMLNEPLADSAIDALHDASRDTSHDTSHD---EPTAAHAPPAF-----DIDAL--- 219 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 220 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 275 >gi|167030913|gb|ABZ05781.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum] Length = 389 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 27/143 (18%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 ++ ++ ++E SM P DT ++ P +++ L + DN++E + Sbjct: 253 LAPYTFTVTDMETVSM----PATDTMLADPHSDASALEFTPESDNVTENLPP-------- 300 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQKIAK 123 +PV + I GS M ++ L +L+ G V+TL D G+++ + + +A Sbjct: 301 ----------LPVTLHIRCGSLTMTLAELQHLASGSVLTLRDVVPGQAL-LYHGDIALAS 349 Query: 124 GEITIMEEDDTHFGVRVIEILNA 146 G++ + G+++ + +A Sbjct: 350 GDLV---DVKGRLGLQITQCFSA 369 >gi|94968672|ref|YP_590720.1| surface presentation of antigens (SPOA) protein [Candidatus Koribacter versatilis Ellin345] gi|94550722|gb|ABF40646.1| surface presentation of antigens (SPOA) protein [Candidatus Koribacter versatilis Ellin345] Length = 109 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S + + ++ + ++ + + L + ++ L G V+ + + Sbjct: 23 ESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLELRPGAVVDTCWSQATDLPL 82 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEI 143 +N +A E +++ +GVR+ E+ Sbjct: 83 RVNGALLAWSEFEVVD---NRYGVRLTEL 108 >gi|167743202|ref|ZP_02415976.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 14] Length = 213 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 8/121 (6%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD---NISEPISSDSNNILEKSTD-NFDL 71 EG ++ ++ PL D+ + + + S D + S S D + D Sbjct: 78 EGENIMLNEPLADSAIDALHDASHDASHDASHDTSHDTSHDTSHDEPTAAHAPPAFDIDA 137 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 138 L---PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 193 Query: 132 D 132 Sbjct: 194 Q 194 >gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 56 SDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 +D ++ +S + + I + V + LG + + + + L+ GDVI LD R + + Sbjct: 237 NDDESLKAESREKIEEGIHKVDVDVIAELGKTSLTVEDFLKLNVGDVIKLDTRSSSPIKV 296 Query: 115 TINN 118 + N Sbjct: 297 YVGN 300 >gi|220915858|ref|YP_002491162.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter dehalogenans 2CP-1] gi|219953712|gb|ACL64096.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter dehalogenans 2CP-1] Length = 324 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV +++ L + ++ + L G V+ L+ V + + + IA+GE+ + + Sbjct: 254 QLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAIARGELV---DVE 310 Query: 134 THFGVRVIEI 143 GVR++ + Sbjct: 311 GAVGVRILSL 320 >gi|168183192|ref|ZP_02617856.1| flagellar motor switch protein FliM [Clostridium botulinum Bf] gi|237796179|ref|YP_002863731.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str. 657] gi|182673661|gb|EDT85622.1| flagellar motor switch protein FliM [Clostridium botulinum Bf] gi|229262117|gb|ACQ53150.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str. 657] Length = 331 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +D +I + S+ + I + +++ LG + + + L+ GDV++L+ R E V Sbjct: 236 RENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVVSLETRTEEPVH 295 Query: 114 ITI 116 + I Sbjct: 296 LLI 298 >gi|326315334|ref|YP_004233006.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372170|gb|ADX44439.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax avenae subsp. avenae ATCC 19860] Length = 373 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 15/136 (11%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDN-----------ISEPISSDSNNILEKS 65 G +MHI L + + + D+D+ P + S L + Sbjct: 223 GTTMHIPAELDLDDSEIALHAAPQADAFADLDDGSAEPAPASAAAEIPEDAGSEAALPAT 282 Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKG 124 I +I V + I + + +++ L L G V+ L ++ V + + Q + G Sbjct: 283 PLPLADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTG 342 Query: 125 EITIMEEDDTHFGVRV 140 + ++ E GVR+ Sbjct: 343 RLVVIGES---LGVRI 355 >gi|255099440|ref|ZP_05328417.1| putative flagellar motor switch protein [Clostridium difficile QCD-63q42] Length = 293 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 46 DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 + ++ E +D + E+ T + + NI + + +G + + +L+ L GDVI Sbjct: 193 ESISVIEFFDNDIGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252 Query: 105 DKRVGESVDITINN 118 +K++ + +DI + N Sbjct: 253 NKKINDYIDIFVEN 266 >gi|323530324|ref|YP_004232476.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. CCGE1001] gi|323387326|gb|ADX59416.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. CCGE1001] Length = 454 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSK 98 L ++ + + +P+ D ++ ++ D+ +++PV+ + + + +S L L Sbjct: 346 SLTKEPIMTDELDPVRPDDLLAPDQQSNPIDIGELDLPVQF--EVDTVALPLSQLYALRP 403 Query: 99 GDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDTHFGVRV 140 G V+ L V E+ + + + Q I GE+ + + H G+R+ Sbjct: 404 GYVLELPTPVAEAQLKLVTHGQTIGYGELVTVGD---HLGIRI 443 >gi|975766|gb|AAC43857.1| SpaO [Salmonella enterica subsp. enterica serovar Typhisuis] Length = 303 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEVMGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|150388448|ref|YP_001318497.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] gi|149948310|gb|ABR46838.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] Length = 331 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 N S+P++ L+K + V + LGS C+ + + + L GDVI LD Sbjct: 235 FSNSSKPVTERDKKALQKRVEKSA------VDITAQLGSTCVTVKDFLELQMGDVIMLDN 288 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V + + I + ++ +G + V+V I Sbjct: 289 PVDKELQILVGDKIRYRG---LPGTSKNKLAVKVTGI 322 >gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] Length = 329 Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 4/95 (4%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 ++ N + S + +MN V++ +LG + +L++L GD + LD+ E + Sbjct: 236 QEANRRNASQSSKEPLKAQLMNSTVEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEPL 295 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + + K+ KG++ + V+V+ + + Sbjct: 296 SVMVGENKVFKGQVGV---SGKRMAVQVLHRVKEE 327 >gi|255305298|ref|ZP_05349470.1| putative flagellar motor switch protein [Clostridium difficile ATCC 43255] Length = 293 Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 46 DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 + ++ E +D + E+ T + + NI + + +G + + +L+ L GDVI Sbjct: 193 ESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252 Query: 105 DKRVGESVDITINN 118 +K++ + +DI + N Sbjct: 253 NKKINDYIDIFVEN 266 >gi|187778682|ref|ZP_02995155.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC 15579] gi|187772307|gb|EDU36109.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC 15579] Length = 331 Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 23/42 (54%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + +++ LG + + + + LS GDV+ LD + E V + I Sbjct: 257 VSMELTAELGRTSVTVEDFLRLSVGDVVALDTKTEEPVHLLI 298 >gi|126697842|ref|YP_001086739.1| putative flagellar motor switch protein [Clostridium difficile 630] gi|115249279|emb|CAJ67092.1| Flagellar motor switch protein FliM [Clostridium difficile] Length = 293 Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 46 DVDNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 + ++ E +D + E+ T + + NI + + +G + + +L+ L GDVI Sbjct: 193 ESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVT 252 Query: 105 DKRVGESVDITINN 118 +K++ + +DI + N Sbjct: 253 NKKINDYIDIFVEN 266 >gi|221640809|ref|YP_002527071.1| Surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides KD131] gi|221161590|gb|ACM02570.1| Surface presentation of antigens (SPOA) protein precursor [Rhodobacter sphaeroides KD131] Length = 51 Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 101 VITLDKRVGESVDITINNQKIAKGEITIME-EDDTHFGVRVIEILNAQ 147 ++ LD+RV + V++ + ++ I +GE+T +E E VR+ E+ N + Sbjct: 1 MLPLDRRVDDPVELYVGDRLIGRGELTELEGEQAGQLAVRLTEVANLR 48 >gi|71388160|gb|AAZ31294.1| EpaO [Escherichia coli] Length = 315 Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + L +I+L ++++I Sbjct: 223 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYETDELCAKRIISLLPESEKNIEIR 282 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 283 VNGALTGYGELVEVDD---KLGVEI 304 >gi|237510407|ref|ZP_04523122.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] gi|235002612|gb|EEP52036.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] Length = 319 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + +D + + + + D + PV ++ +L + ++ L G Sbjct: 213 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 269 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132 V+ L GE V I N + +GE+ + E Sbjct: 270 VLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 300 >gi|206603652|gb|EDZ40132.1| Flagellar motor switch protein FliM) [Leptospirillum sp. Group II '5-way CG'] Length = 338 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAK 123 P++++ +G + +++ GDV +LD+ V E V++ + + +A+ Sbjct: 258 PLEIEAFIGEARFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLAR 307 >gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] Length = 331 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 NIS+P++ L+K + V + LG C+ + + + L GDVI LD Sbjct: 235 FSNISKPVTESDKKALQKRVEKST------VNITAQLGGTCVTVKDFLELQIGDVIMLDN 288 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V + + I + ++ +G + V+V I Sbjct: 289 PVNKELQILVGDKIRYRG---LPGTSKNKLAVKVTGI 322 >gi|212639555|ref|YP_002316075.1| flagellar motor switch protein FliM [Anoxybacillus flavithermus WK1] gi|212561035|gb|ACJ34090.1| Flagellar motor switch protein FliM [Anoxybacillus flavithermus WK1] Length = 335 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 7/78 (8%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIM 129 + V M LG+ + I + LS GDVI LD+ V + + I + + + I + Sbjct: 258 LKQTKVPMIAELGTSTISIQEFLQLSVGDVIQLDQTVRDPLVIKVGDVPKFIGQ-----P 312 Query: 130 EEDDTHFGVRVIEILNAQ 147 + + +++++++ + Sbjct: 313 GKMNKRLAIQILDVIKGE 330 >gi|120609153|ref|YP_968831.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax citrulli AAC00-1] gi|120587617|gb|ABM31057.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax citrulli AAC00-1] gi|255047056|gb|AAW81013.2| HrcQ [Acidovorax citrulli] Length = 352 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73 +L+ + + Q + P + + + SD+ E + I Sbjct: 213 DLDDSEIALHAAPQADAFAEPADEDGAPDPAGAAEEAAPCSGSDAEP--EATPLPLTDIG 270 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEED 132 I V + I + + +++ L L G ++ L ++ V + + Q + G + ++ + Sbjct: 271 GIRVPVAIEIDTARIRLDELAALDAGAIVPLAVAARDATVRLVCHGQVVGTGRLVVIGD- 329 Query: 133 DTHFGVRV 140 H GVR+ Sbjct: 330 --HLGVRI 335 >gi|15803390|ref|NP_289423.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 EDL933] gi|15832980|ref|NP_311753.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. Sakai] gi|195936472|ref|ZP_03081854.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. EC4024] gi|217327510|ref|ZP_03443593.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7 str. TW14588] gi|254794807|ref|YP_003079644.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. TW14359] gi|261226167|ref|ZP_05940448.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256579|ref|ZP_05949112.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. FRIK966] gi|12517368|gb|AAG57982.1|AE005515_4 typeIII secretion apparatus protein [Escherichia coli O157:H7 str. EDL933] gi|13363198|dbj|BAB37149.1| type III secretion protein EpaO [Escherichia coli O157:H7 str. Sakai] gi|217319877|gb|EEC28302.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7 str. TW14588] gi|254594207|gb|ACT73568.1| type III secretion apparatus protein [Escherichia coli O157:H7 str. TW14359] gi|320189200|gb|EFW63859.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. EC1212] gi|326339059|gb|EGD62874.1| surface presentation of antigens protein SpaO [Escherichia coli O157:H7 str. 1044] Length = 328 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 31 VSSPTNNSEMLIQKNDVD-NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 ++ + D + + + S+S E + +PVK++ +LG M Sbjct: 210 YPEELKMADHFQYEEDFETDDFDIKKSESEIYDENDEQMINSFEELPVKIEFVLGKKIMN 269 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + + L +I+L ++++I +N GE+ +++ GV + Sbjct: 270 LYEIDELCAKRIISLLPESEKNIEIRVNGALTGYGELVEVDD---KLGVEI 317 >gi|53716455|ref|YP_106127.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 23344] gi|67641438|ref|ZP_00440217.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia mallei GB8 horse 4] gi|254176163|ref|ZP_04882821.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 10399] gi|254200993|ref|ZP_04907358.1| type III secretion system protein BsaV [Burkholderia mallei FMH] gi|254204957|ref|ZP_04911310.1| type III secretion system protein BsaV [Burkholderia mallei JHU] gi|52422425|gb|AAU45995.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 23344] gi|147748605|gb|EDK55680.1| type III secretion system protein BsaV [Burkholderia mallei FMH] gi|147754543|gb|EDK61607.1| type III secretion system protein BsaV [Burkholderia mallei JHU] gi|160697205|gb|EDP87175.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 10399] gi|238522378|gb|EEP85823.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia mallei GB8 horse 4] Length = 327 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 12/117 (10%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S D EP ++ + + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDTSHD---EPTAAHAPPAF-----DIDAL--- 252 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + + L G V+ L GE V I N + +GE+ + E Sbjct: 253 PVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGEQ 308 >gi|323186702|gb|EFZ72024.1| flagellar motor switch protein fliN domain protein [Escherichia coli RN587/1] Length = 39 Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%) Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I IN IA+GE+ ++ + +GVR+ +I+ Sbjct: 1 ILINGYLIAQGEVVVVAD---KYGVRITDIITP 30 >gi|332669206|ref|YP_004452214.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484] gi|332338244|gb|AEE44827.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484] Length = 309 Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 12/96 (12%) Query: 51 SEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 ++ S + + + + + ++PV + + + ++VNL+ GDV+ L Sbjct: 214 ADARSEEERQVARIAHAELERAVQDVPVHVAVQFRPVTVHPRDVVNLTVGDVLPLSHPSS 273 Query: 110 ESVDITINNQKIAKG-----------EITIMEEDDT 134 E +D+ ++ +A+ ++ +EE+ Sbjct: 274 EPLDVVVDGIVLARAAAGSHGSRLACQVVTVEENPA 309 >gi|197121157|ref|YP_002133108.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. K] gi|196171006|gb|ACG71979.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. K] Length = 324 Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +PV +++ L + ++ + L G V+ L+ V + + + +A+GE+ + + Sbjct: 254 QLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAVARGELV---DVE 310 Query: 134 THFGVRVIEI 143 GVR++ + Sbjct: 311 GAVGVRILSL 320 >gi|150019115|ref|YP_001311369.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB 8052] gi|149905580|gb|ABR36413.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB 8052] Length = 332 Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 9/109 (8%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 + L+ + N +E ++S LEK + D V++ LG+ + + + + L+ Sbjct: 227 DKLVVQYAFKNDNEASMAESREKLEKGINKVD------VEIVAELGTANITVDDFLKLTV 280 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 GDVI LD + + + + N++ + ++ ++ GV +++I + + Sbjct: 281 GDVIKLDNKSSSPIKVYVGNEECYYAKPGVVGKNA---GVMILDITDKE 326 >gi|332799187|ref|YP_004460686.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1] gi|332696922|gb|AEE91379.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1] Length = 331 Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + + + +++ LG + + +NL+ GDVI L+K + + DI I ++ Sbjct: 252 EKVYDTKTEIRAELGRTLITVGEFINLATGDVIALNKNIKDGADIFIKDKL 302 >gi|51103201|gb|AAT96342.1| HrcQ-like protein [Pseudomonas viridiflava] Length = 354 Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +D+I E S+ + E + ++ ++ + + + G+ + + L +L+ G V+T + Sbjct: 256 HLDDIDEHDSAHEADSAEANDNDLQRFNDLSMALTVRAGNLSLSLGQLRSLAVGSVLTFN 315 Query: 106 K-RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 G ++ + + +A GE+ + + G+++ Sbjct: 316 GCTPGHAM-LHHGERVLAHGELV---DVEGRLGLQIT 348 >gi|50121008|ref|YP_050175.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560423|gb|AAS20383.1| HrcQ [Pectobacterium atrosepticum] gi|49611534|emb|CAG74982.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 405 Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 12/115 (10%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 VS P +++++ + D + + DS+N+ E +P+ + I GS M Sbjct: 278 ETVSMPATATDIMLADPNSDTSAFEFTLDSDNVTESLPP-------LPITLHIRCGSLTM 330 Query: 89 QISNLVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 ++ L +L+ G V+TL D G++ + + +A G++ + + G+++ + Sbjct: 331 TLAELQHLASGSVLTLRDVVPGQA-WLYHGDIALASGDLV---DVEGRLGLQITQ 381 >gi|16078694|ref|NP_389513.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. 168] gi|221309509|ref|ZP_03591356.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. 168] gi|221313833|ref|ZP_03595638.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318756|ref|ZP_03600050.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. JH642] gi|221323028|ref|ZP_03604322.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. SMY] gi|296330846|ref|ZP_06873321.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674364|ref|YP_003866036.1| flagellar motor switching and energizing protein [Bacillus subtilis subsp. spizizenii str. W23] gi|321315398|ref|YP_004207685.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5] gi|120344|sp|P23453|FLIM_BACSU RecName: Full=Flagellar motor switch protein FliM gi|142922|gb|AAA22446.1| flagellar switch protein [Bacillus subtilis] gi|2634003|emb|CAB13504.1| flagellar motor switching and energizing component [Bacillus subtilis subsp. subtilis str. 168] gi|291484184|dbj|BAI85259.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. natto BEST195] gi|296151851|gb|EFG92725.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412608|gb|ADM37727.1| flagellar motor switching and energizing component [Bacillus subtilis subsp. spizizenii str. W23] gi|320021672|gb|ADV96658.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5] Length = 332 Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + SD N + T + + IM + + LG+ + I ++L GD ITLDK V + + Sbjct: 236 MQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPL 295 Query: 113 DITINNQK 120 + + ++ Sbjct: 296 TVLVGDKP 303 >gi|170288054|ref|YP_001738292.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2] gi|170175557|gb|ACB08609.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2] Length = 328 Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV +Q ++G +++ +++L GDVI L + + I + + +G I Sbjct: 255 IPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGTFKG 311 Query: 135 HFGVRVI 141 + V+V Sbjct: 312 KYAVKVT 318 >gi|89895728|ref|YP_519215.1| hypothetical protein DSY2982 [Desulfitobacterium hafniense Y51] gi|89335176|dbj|BAE84771.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 338 Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V M +LG + + +L+ L+ GDVI L + V E++ + + N + KG I H Sbjct: 265 KVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEALPVYVGNFRKFKG---IPGLHGEH 321 Query: 136 FGVRVIEILNA 146 V++ EI+ Sbjct: 322 LAVQITEIVEE 332 >gi|126443367|ref|YP_001063162.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] gi|126222858|gb|ABN86363.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] Length = 323 Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S + P + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 248 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 249 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 304 >gi|53722559|ref|YP_111544.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|126458287|ref|YP_001076113.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|242311185|ref|ZP_04810202.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] gi|254186857|ref|ZP_04893373.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] gi|52212973|emb|CAH39011.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|126232055|gb|ABN95468.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|157934541|gb|EDO90211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] gi|242134424|gb|EES20827.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] Length = 323 Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S + P + D + Sbjct: 204 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 248 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 249 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 304 >gi|219670152|ref|YP_002460587.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense DCB-2] gi|219540412|gb|ACL22151.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense DCB-2] Length = 331 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V M +LG + + +L+ L+ GDVI L + V E++ + + N + KG I H Sbjct: 258 KVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEALPVYVGNFRKFKG---IPGLHGEH 314 Query: 136 FGVRVIEILNA 146 V++ EI+ Sbjct: 315 LAVQITEIVEE 325 >gi|110632471|ref|YP_672679.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp. BNC1] gi|110283455|gb|ABG61514.1| surface presentation of antigens (SPOA) protein [Chelativorans sp. BNC1] Length = 354 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D I ++PV++ + + + + L L G + L+ + V I N +G + + Sbjct: 275 DPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDLTRPVTILANGAPAGRGYLVQI 334 Query: 130 EEDDTHFGVRVI 141 + H GV++ Sbjct: 335 GD---HMGVQLS 343 >gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum ferrodiazotrophum] Length = 341 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 27/46 (58%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 +P+K+ LG+ ++S ++ GD+ITLD+ V + + IT+ Sbjct: 259 VPIKIVAELGTTKARLSEVLAWKPGDMITLDQYVDDPIKITVEKAL 304 >gi|59712452|ref|YP_205228.1| flagellar motor switch protein FliM [Vibrio fischeri ES114] gi|197335836|ref|YP_002156671.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11] gi|59480553|gb|AAW86340.1| flagellar motor switch protein FliM [Vibrio fischeri ES114] gi|197317326|gb|ACH66773.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11] Length = 344 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 59/126 (46%), Gaps = 9/126 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S D IM++PV+M Sbjct: 204 IEVDGGGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVEM 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L+ L GD+I ++ E+ + + + +G++ + + ++ Sbjct: 260 KVNLLESQISLRDLMELEAGDIIPVEMP--EAATVFVEDLPTYRGKV---GQSNDKLAIQ 314 Query: 140 VIEILN 145 + E + Sbjct: 315 ITEKIK 320 >gi|167577438|ref|ZP_02370312.1| type III secretion system protein BsaV [Burkholderia thailandensis TXDOH] Length = 320 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 4/94 (4%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 E L + D+ P ++ + + D + PV ++ +L + ++ L Sbjct: 212 EPLAEHAIDDSHDSPATAGAAPDASPPAFDIDAL---PVTLEFVLQDERVTVAQLARCHP 268 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 G V+ L GE V I N Q GE+ + + Sbjct: 269 GLVLPLRGVPGE-VTIRANGQPFGIGELIQVGDQ 301 >gi|167566299|ref|ZP_02359215.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia oklahomensis EO147] Length = 144 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130 + ++ + + + + + + I+ L L G V+ L + V + Q I GE+ + Sbjct: 68 LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 127 Query: 131 EDDTHFGVRVI 141 H GVR+ Sbjct: 128 ---AHLGVRIN 135 >gi|973293|gb|AAC43956.1| SpaO [Salmonella enterica] Length = 303 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|24496480|gb|AAN60221.1| FliM [Fervidobacterium sp. YNP] Length = 165 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 59 NNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 I E+ + + + + + I+G + + ++ L GDVI L + E + + +N Sbjct: 74 KEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVIRLKEHYDEPIRVEVN 133 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + G+ + ++ V++ E++ Sbjct: 134 GRTKFLGK---PGQYKGNYAVKITEVIEE 159 >gi|975762|gb|AAC43851.1| SpaO [Salmonella enterica] Length = 303 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|326794363|ref|YP_004312183.1| surface presentation of antigens (SPOA) protein [Marinomonas mediterranea MMB-1] gi|326545127|gb|ADZ90347.1| surface presentation of antigens (SPOA) protein [Marinomonas mediterranea MMB-1] Length = 142 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 13/122 (10%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQI 81 +D PL+D+ +S N + +D + SEP S IL+K + P+++ + Sbjct: 12 LDAPLEDSMTASADNIQHNVSDASDHQSESEPAPS---TILKKYP-------DAPLELTL 61 Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 G L L+ G V+ + Q IA+GE+ +E G+++ Sbjct: 62 NAGRISASFDELSQLNIGSVLVATGEKAGYATMYHQQQAIARGELVNVE---GRLGIQIT 118 Query: 142 EI 143 + Sbjct: 119 HV 120 >gi|34498080|ref|NP_902295.1| surface presentation of antigens protein SpaO [Chromobacterium violaceum ATCC 12472] gi|34103935|gb|AAQ60295.1| surface presentation of antigens; secretory proteins [Chromobacterium violaceum ATCC 12472] Length = 296 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + + + D + PV+++ +L + + L L + +V+ L V++ N Sbjct: 209 AAAAETRPLADLDRL---PVRLEFVLQQSEVTLDELRELCRSNVLPLSADAERRVELRAN 265 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIE 142 + +GE+ + D GV V + Sbjct: 266 GALLGRGELV---QLDGRLGVEVAQ 287 >gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 342 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 26/52 (50%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + + + V + + +G + + +++ L GDVI L++ E V + + + Sbjct: 252 IERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVIKLEETYSEPVKVRVGERV 303 >gi|218988951|gb|ACL13614.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. salamae serovar Sofia] Length = 303 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|89111191|dbj|BAE80280.1| HrcQ [Acidovorax avenae subsp. avenae] Length = 309 Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 15/136 (11%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISE-----------PISSDSNNILEKS 65 G +MHI L + + + D+D+ P + S L + Sbjct: 159 GTTMHIPAELDLDDSEIALHAAPQADAFADLDDGGAGPAPASAAAEIPEDACSEAALPAT 218 Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKG 124 I +I V + I + + +++ L L G V+ L ++ V + + Q + G Sbjct: 219 PLPLADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTG 278 Query: 125 EITIMEEDDTHFGVRV 140 + ++ E GVR+ Sbjct: 279 RLVVIGES---LGVRI 291 >gi|973285|gb|AAC43950.1| SpaO [Salmonella enterica] gi|973289|gb|AAC43953.1| SpaO [Salmonella enterica] Length = 303 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT 1] gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT 1] Length = 325 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 30/50 (60%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + ++ V++ +LGS +Q+ + + +GDVI LD+RV + + + + + Sbjct: 251 LEDVDVELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKPM 300 >gi|167573401|ref|ZP_02366275.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia oklahomensis C6786] Length = 139 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130 + ++ + + + + + + I+ L L G V+ L + V + Q I GE+ + Sbjct: 63 LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 122 Query: 131 EDDTHFGVRVI 141 H GVR+ Sbjct: 123 ---AHLGVRIN 130 >gi|161503488|ref|YP_001570600.1| type III secretion system protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864835|gb|ABX21458.1| hypothetical protein SARI_01564 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 322 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 3/105 (2%) Query: 37 NSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNL 96 + +++ +++ E + + IL+ + + +P + +G ++I L L Sbjct: 212 TEDNMMKFDELVQDIETLLAQEGPILKSDIASSVELEQLPQSVLFEIGRASVEIGQLRQL 271 Query: 97 SKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 GDV+ + V I +N + I +GE+ F VR+ Sbjct: 272 KAGDVLPVGGCFAPEVTIRLNGRVIGQGELIA---CGNEFMVRIT 313 >gi|157692311|ref|YP_001486773.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032] gi|194014958|ref|ZP_03053575.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061] gi|157681069|gb|ABV62213.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032] gi|194013984|gb|EDW23549.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061] Length = 332 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + S+ N ++ T + IM + + LG M + +NL GD I LDK V + Sbjct: 236 MQSERNEPKQQETKAIEKRIMTAKIPVVAELGESEMTVEEFLNLEIGDCIALDKPVNAPL 295 Query: 113 DITINNQK 120 + + N+ Sbjct: 296 TVMVGNKP 303 >gi|289810465|ref|ZP_06541094.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 223 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + N ++ + + +PVK++ +L + ++ L + + +++L V +V+I Sbjct: 132 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMA 191 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 192 NGVLLGNGELVQMNDT---LGVEIHEWLSE 218 >gi|15643443|ref|NP_228487.1| flagellar motor switch protein FliM [Thermotoga maritima MSB8] gi|4981202|gb|AAD35762.1|AE001740_8 flagellar motor switch protein FliM [Thermotoga maritima MSB8] Length = 328 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IPV +Q ++G +++ +++L GDVI L + + I + + +G I Sbjct: 255 IPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGVFKG 311 Query: 135 HFGVRVI 141 + V+V Sbjct: 312 KYAVKVT 318 >gi|157154771|ref|YP_001464198.1| type III secretion apparatus protein EpaO2 [Escherichia coli E24377A] gi|300820662|ref|ZP_07100813.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 119-7] gi|309793923|ref|ZP_07688348.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 145-7] gi|157076801|gb|ABV16509.1| type III secretion apparatus protein EpaO2 [Escherichia coli E24377A] gi|300526926|gb|EFK47995.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 119-7] gi|308122330|gb|EFO59592.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 145-7] Length = 190 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + + L +I+L +++ I Sbjct: 98 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIKIR 157 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 158 VNGALTGYGELVEVDD---KLGVEI 179 >gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827] gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827] Length = 320 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 +S+ E + + + N+PV + + S ++ S+LV+L GDVI L R+ E + Sbjct: 225 VSASERATREAARNAITAGLQNVPVAVSVKFQSVRLEPSDLVDLQPGDVIPLTHRLDEPL 284 Query: 113 DITINNQKIA 122 DI + A Sbjct: 285 DIVAAGRTFA 294 >gi|209695733|ref|YP_002263663.1| flagellar motor switch protein FliM [Aliivibrio salmonicida LFI1238] gi|208009686|emb|CAQ79985.1| polar flagellar switch protein FliM (flagellar motor switch protein FliM) [Aliivibrio salmonicida LFI1238] Length = 343 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 59/126 (46%), Gaps = 9/126 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S D IM++PV+M Sbjct: 204 IEVDGGGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVEM 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L++L GD+I ++ E+ + + + +G++ + V+ Sbjct: 260 KVNLLESEISLRDLMDLQAGDIIPIEMP--EAATVFVEDLPTYRGKV---GKSGDKLAVQ 314 Query: 140 VIEILN 145 + E + Sbjct: 315 ITEKIK 320 >gi|253573530|ref|ZP_04850873.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon 786 str. D14] gi|251847058|gb|EES75063.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon 786 str. D14] Length = 333 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +S + + E+ + + + + LG + + ++LS GDVI+L+K V E + Sbjct: 236 VSQKKSRVPEEVEALRNRVNKAKLPIIAELGESQITVREFLSLSVGDVISLNKPVQEGLQ 295 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I + ++ G +++ V++ EI++ Sbjct: 296 IRVGDRLKYIGSPGTVKD---RLAVQIDEIVSE 325 >gi|254301455|ref|ZP_04968899.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] gi|157810889|gb|EDO88059.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] Length = 319 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + +D + + + + D + PV ++ +L + ++ L G Sbjct: 213 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 269 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132 V+ L GE V I N Q +GE+ + E Sbjct: 270 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 300 >gi|76818002|ref|YP_335737.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710b] gi|254264677|ref|ZP_04955542.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] gi|76582475|gb|ABA51949.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710b] gi|254215679|gb|EET05064.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] Length = 319 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + +D + + + + D + PV ++ +L + ++ L G Sbjct: 213 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 269 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132 V+ L GE V I N Q +GE+ + E Sbjct: 270 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 300 >gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC 14580] gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC 14580] gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2] gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580] gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2] Length = 332 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + SD + T + + I+ + + LGS + I +NL GD ITLDK V E + Sbjct: 236 MQSDRIEPKPEETKSIEKRILTAQIPIVAELGSSELTIEEFLNLEIGDCITLDKSVAEPL 295 Query: 113 DITINNQK 120 + + ++ Sbjct: 296 TVLVGDKP 303 >gi|167898810|ref|ZP_02486211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 7894] Length = 264 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S + P + D + Sbjct: 145 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 189 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 190 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 245 >gi|281411906|ref|YP_003345985.1| flagellar motor switch protein FliM [Thermotoga naphthophila RKU-10] gi|281373009|gb|ADA66571.1| flagellar motor switch protein FliM [Thermotoga naphthophila RKU-10] Length = 328 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +PV +Q ++G +++ +++L GDVI L + + I + + +G I Sbjct: 255 VPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGVFKG 311 Query: 135 HFGVRVI 141 + V+V Sbjct: 312 KYAVKVT 318 >gi|296133037|ref|YP_003640284.1| flagellar motor switch protein FliM [Thermincola sp. JR] gi|296031615|gb|ADG82383.1| flagellar motor switch protein FliM [Thermincola potens JR] Length = 333 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 + + +LG +++ L+ L GDVI LD R + + I + ++K G + Sbjct: 260 KITLSAVLGETTIKLGELLELQPGDVIQLDNRTTDELKILVGDRKKFYGR---PGTVGSR 316 Query: 136 FGVRVIEILNA 146 V++ ++ Sbjct: 317 LAVQITRLVKE 327 >gi|150021178|ref|YP_001306532.1| flagellar motor switch protein FliM [Thermosipho melanesiensis BI429] gi|149793699|gb|ABR31147.1| flagellar motor switch protein FliM [Thermosipho melanesiensis BI429] Length = 329 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ---KIAKGEITIMEEDD 133 V++ +G + + +++NL GDVI L+ + + I +N + A G Sbjct: 259 VELSATIGETNLTLWDILNLEVGDVIRLNTFKEDPLKIKLNGKDKFLGAPG------VFK 312 Query: 134 THFGVRVIEILNAQ 147 + V+++E+ + + Sbjct: 313 GKYAVKILEVFDEE 326 >gi|148269397|ref|YP_001243857.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1] gi|147734941|gb|ABQ46281.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1] Length = 328 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +PV +Q ++G +++ +++L GDVI L + + I + + +G I Sbjct: 255 VPVTVQAVIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRG---IPGVFKG 311 Query: 135 HFGVRVI 141 + V+V Sbjct: 312 KYAVKVT 318 >gi|145284339|gb|ABP51920.1| AscQ [Aeromonas veronii bv. sobria] Length = 308 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 11/107 (10%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P + Q ++ + +D E + +P+++ +G + L Sbjct: 204 PFAYCQPHQQHLELTAMHNAKPADPFGPTE--------LEQLPIQVSFEVGRQTLDWHTL 255 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 +L G +I LD + V I N + G + E GVRV Sbjct: 256 TSLQPGALIDLDTPLDGEVRIISNGHSLGVGRLV---EIQGRLGVRV 299 >gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC 27405] gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 2360] gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20] gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC 27405] gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 2360] gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20] gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 1313] Length = 328 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V ++ ILG +Q+++ + L GDVITLD V ++D+ + + +G + Sbjct: 258 KVPVRAILGRATIQVADFLELQPGDVITLDSNVNGNLDVLVGDLLKFRGSPGV---KKNR 314 Query: 136 FGVRVIEILNAQ 147 +++ E++ + Sbjct: 315 NAIKITEVIRRE 326 >gi|167567945|ref|ZP_02360861.1| SctQ [Burkholderia oklahomensis EO147] gi|167573181|ref|ZP_02366055.1| SctQ [Burkholderia oklahomensis C6786] Length = 431 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 49 NISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++SE + + D I + + +Q + + + I L L G VI L V Sbjct: 331 SMSEDADQADAGLAVATADEPARIGELELPVQFEIDTVSLPIDQLSVLEPGYVIELPVAV 390 Query: 109 GES-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 ++ + I ++ Q + GE+ + E H GVR+I Sbjct: 391 ADARLRIVVHGQTVGFGELVAVGE---HLGVRII 421 >gi|147678396|ref|YP_001212611.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] gi|146274493|dbj|BAF60242.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] Length = 330 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 54 ISSDSNNILEKSTDNFDLIMNIP-VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 ++ + ++ + P +++ ++ G + + + + L +GDV+ LDK+V + + Sbjct: 235 FGPQTSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGDVLILDKKVDQDL 294 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVI 141 D+ I K + V++ Sbjct: 295 DLYIGEHLKFK---VQAGALGSKLAVQIT 320 >gi|212711702|ref|ZP_03319830.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM 30120] gi|212685804|gb|EEB45332.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM 30120] Length = 309 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + + VK+ +LG + + L L G V ++ + V + N Q IA+GE+T + + Sbjct: 231 LHGLTVKLTFVLGHSDITVGELDTLQPGTVYSIGENKEREVKVYANKQLIAEGELTYIGD 290 Query: 132 DDTHFGVRVIEILN 145 D G+ + +++ Sbjct: 291 SDE-LGLEIKRLVS 303 >gi|255022967|ref|ZP_05294953.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208] Length = 503 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 + +I E + + ++ T +E++ + + + + + + + E Sbjct: 382 MYQIFNPAAAKEMAQLTLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 441 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++ IPV ++++ G+ +++ ++ + DVI L + + E + + +N I KG Sbjct: 442 EQ----ILEEIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKG 497 Query: 125 EITIME 130 + ++ Sbjct: 498 ILVRVD 503 >gi|330819400|ref|YP_004348262.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia gladioli BSR3] gi|327371395|gb|AEA62750.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia gladioli BSR3] Length = 474 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDD 133 I + +Q + + + + L L G V+ L ++ + + ++ Q + GE+ + E Sbjct: 400 IELPVQFEIDTVALPLDQLSALGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVGE-- 457 Query: 134 THFGVRVI 141 H GVR+I Sbjct: 458 -HLGVRII 464 >gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 328 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Query: 58 SNNILEKSTDNFDLIM----NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 S E+S N I N + +++++G + + +L+ LS GDVI L++ + + +D Sbjct: 236 STAAQERSPANIAAIRTKLENTTIPIKVVMGKTVITVRDLLALSVGDVIPLNRNISQELD 295 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I I N+ G+ + ++V I+ + Sbjct: 296 IVIGNRAKFLGKPGV---FANRMAIQVTGIVEEE 326 >gi|1483321|emb|CAA68097.1| HrcQb protein [Pantoea agglomerans] Length = 108 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S + + + L+ P+ +++ G + + L L G ++TLD + Sbjct: 20 SEPLQSEDNPHIALL---PLSLEVRCGRTRLTLGELQQLQLGRILTLDNMTPGEAGLYHG 76 Query: 118 NQKIAKGEITIME 130 + IA+GE+ +E Sbjct: 77 DTLIARGELVDVE 89 >gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] Length = 308 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 P+ ++ +LG M++ + L GDVI LD RVG + + + N+ + + ++ E Sbjct: 242 PLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNKLAFQAKPGVVGE---R 298 Query: 136 FGVRVI 141 V++ Sbjct: 299 MAVQIT 304 >gi|167840285|ref|ZP_02466969.1| Surface presentation of antigens (SPOA) protein domain protein [Burkholderia thailandensis MSMB43] Length = 187 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF--- 69 D+L+ + D+P S ++ P S SN+ + Sbjct: 49 DDLDEPIVAGDSPGDLRGDSRADLQADSQAHSRSDLWTDSPTDSPSNSPARDAPSAVPEP 108 Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITI 128 + ++ + + + + + + I+ L L G V+ L V + Q I G + Sbjct: 109 ADLGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQAIGGGRLVA 168 Query: 129 MEEDDTHFGVRV 140 + H GVR+ Sbjct: 169 VG---AHLGVRI 177 >gi|153954743|ref|YP_001395508.1| hypothetical protein CKL_2125 [Clostridium kluyveri DSM 555] gi|219855207|ref|YP_002472329.1| hypothetical protein CKR_1864 [Clostridium kluyveri NBRC 12016] gi|146347601|gb|EDK34137.1| FliM [Clostridium kluyveri DSM 555] gi|219568931|dbj|BAH06915.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 331 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 D + E + + + + + +LG+ + ++ +NL+ GDV+TL ++ + V Sbjct: 236 QDGDEEVLAESREKLRERLNIVGIHLTAVLGTVEVTVNEFLNLNIGDVLTLKEKTTDPVK 295 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + ++ G+ I+ + + G+ +++I++ Sbjct: 296 LMLEDKIYYYGKPGIIGK---NMGIEILDIIDK 325 >gi|973273|gb|AAC43941.1| SpaO [Salmonella enterica] Length = 303 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|238023707|ref|YP_002907939.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia glumae BGR1] gi|237878372|gb|ACR30704.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia glumae BGR1] Length = 445 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDD 133 + + +Q + + + + L +L G V+ L ++ + + ++ Q + GE+ + E Sbjct: 371 VELPVQFEIDTVALPLDQLSSLGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVGE-- 428 Query: 134 THFGVRVI 141 H GVR+I Sbjct: 429 -HLGVRII 435 >gi|170690584|ref|ZP_02881751.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia graminis C4D1M] gi|170145019|gb|EDT13180.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia graminis C4D1M] Length = 446 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSK 98 L ++ + + +P+ D ++ ++ D+ +++PV+ + + + +S L L Sbjct: 338 SLTKEPIMTDELDPVRPDDLLAPDQHSNPIDIGELDLPVQF--EVDTVALPLSQLYALRP 395 Query: 99 GDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 G V+ L + + + Q I GE+ + + H G+R+ Sbjct: 396 GYVLELPTPVADAQLKLVTHGQTIGYGELVTVGD---HLGIRI 435 >gi|973269|gb|AAC43938.1| SpaO [Salmonella enterica] Length = 303 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + ++ + + +PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|322421724|ref|YP_004200947.1| flagellar motor switch protein FliM [Geobacter sp. M18] gi|320128111|gb|ADW15671.1| flagellar motor switch protein FliM [Geobacter sp. M18] Length = 325 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 28/51 (54%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + +M P+ + + +G + +++L+ L+ GDVI LD + + + + K Sbjct: 249 EELMGAPMDISVEMGGATVSLADLLGLTPGDVIMLDSSGKDELSVKVGGTK 299 >gi|167820376|ref|ZP_02452056.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 91] Length = 233 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S + P + D + Sbjct: 114 EGENIMLNEPLADSAIDALHDASHDASHDEPTAAHAPPAF------------DIDAL--- 158 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 159 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 214 >gi|42524697|ref|NP_970077.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus HD100] gi|39576907|emb|CAE78136.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus HD100] Length = 333 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 53/123 (43%), Gaps = 13/123 (10%) Query: 9 SYIKDNLEGRSMHIDNPLQ-------DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61 S+++ + + + I P D + + T ++I ++ I + + + Sbjct: 186 SFVRTEVNPQFVGIVPPTDVVIASTFDVELENATGTISIVIPYATIEPIKQKLQTGFQVE 245 Query: 62 LEKSTDNF------DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 +++ + ++ +++++ LG +++ +L+NL GDVI LD+ D+ Sbjct: 246 TDQTDKKLWTAIIQEQLLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDVA 305 Query: 116 INN 118 + Sbjct: 306 VEG 308 >gi|975754|gb|AAC43845.1| SpaO [Salmonella enterica] Length = 303 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + ++ + +PVK++ +L + +++L + + +++L +V+I Sbjct: 212 EEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|157850891|gb|ABV90252.1| flagellar motor switch protein [Bacillus subtilis subsp. sadata] Length = 110 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + SD N + T + + IM + + LG+ + I ++L GD ITLDK V + + Sbjct: 14 MQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPL 73 Query: 113 DITINNQK 120 + + ++ Sbjct: 74 TVLVGDKP 81 >gi|153003619|ref|YP_001377944.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. Fw109-5] gi|152027192|gb|ABS24960.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. Fw109-5] Length = 334 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDV--ITLDKRVGESVDITINNQKIAKGEITIMEE 131 +PV +++ L + ++ L L G + + LD+R V + + +A+GE+ + Sbjct: 264 QLPVVLEVELARVEVTLAELARLEPGGILPLALDRRG--LVTLRAGERAVARGELV---D 318 Query: 132 DDTHFGVRVIEI 143 D GVR+I++ Sbjct: 319 VDGAVGVRIIDL 330 >gi|312171378|emb|CBX79637.1| Surface presentation of antigens protein spaO [Erwinia amylovora ATCC BAA-2158] Length = 308 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 54 ISSDSNNILEKSTDNFDLIMN---IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + + N E + + +++ +PV ++ +L + +S L + G + ++ + Sbjct: 203 VENQLENNHEMYLEEEEALLDWTKLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEK 262 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + I +N + A GE+ ME+ F V + ++ Sbjct: 263 KIKIYLNRKLFACGELVAMED--GSFAVEINQV 293 >gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM 1740] gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes] Length = 354 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 44/94 (46%), Gaps = 7/94 (7%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++++ ++ + L+ V + +LG + + ++ L GD++ LD+ ++V + Sbjct: 238 SETSSKKSRNRELQALLGGAAVNISAVLGGTSLDLKEVLELGVGDIVRLDRPADDTVIVN 297 Query: 116 INN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ + IA + V++ E++ + Sbjct: 298 VDGREKYIA-----TIGLQRYRKTVKIKEVIKTE 326 >gi|311068153|ref|YP_003973076.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942] gi|310868670|gb|ADP32145.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942] Length = 332 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + S+ N + T + + IM + + LG+ + I ++L GD ITLDK V + + Sbjct: 236 MQSERNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPL 295 Query: 113 DITINNQK 120 + + ++ Sbjct: 296 TVLVGDKP 303 >gi|167907138|ref|ZP_02494343.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei NCTC 13177] Length = 260 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + +D + + + + D + PV ++ +L + ++ L G Sbjct: 154 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 210 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132 V+ L GE V I N Q +GE+ + E Sbjct: 211 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 241 >gi|975758|gb|AAC43848.1| SpaO [Salmonella enterica] Length = 303 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + ++ + +PVK++ +L + +++L + + +++L +V+I Sbjct: 212 EEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] Length = 359 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 81 IILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 ILG + +++ +NL GDVI LD E +D+ I + I K + + + V++ Sbjct: 264 AILGKTEIYLNDFLNLEVGDVIRLDSFYDEPIDLEIEERPIFK---VNVGKSKGFYSVKI 320 Query: 141 IE 142 +E Sbjct: 321 VE 322 >gi|8996040|gb|AAF82339.1|AF005744_18 YsaQ [Yersinia enterocolitica] gi|15088608|gb|AAK84119.1|AF369954_17 YsaQ [Yersinia enterocolitica] Length = 312 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +D+ + + + + E FD + + VK+ +LG + + L ++ G V +L Sbjct: 208 DDMQETEDTVPTLDEVLPEYLPSRFD-VAKLTVKLTFVLGHSEILLEELAHIQPGSVYSL 266 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V + N Q +A+GE+ + + + G+ V ++ Sbjct: 267 GADKDREVKVYANKQLVAEGELIYIGDGEE-LGLEVTKL 304 >gi|292487270|ref|YP_003530142.1| surface presentation of antigens protein spaO [Erwinia amylovora CFBP1430] gi|292900358|ref|YP_003539727.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200206|emb|CBJ47334.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552689|emb|CBA19734.1| Surface presentation of antigens protein spaO [Erwinia amylovora CFBP1430] Length = 308 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 54 ISSDSNNILEKSTDNFDLIMN---IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 + + N E + + +++ +PV ++ +L + +S L + G + ++ + Sbjct: 203 VENQLENNNEMYLEEEEALLDWTKLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEK 262 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + I +N + A GE+ ME+ F V + ++ Sbjct: 263 KIKIYLNRKLFACGELVAMED--GSFAVEINQV 293 >gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13] Length = 332 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + LG + S+L+N++ GDV+ L +++ E + + ++N+ G++ + + Sbjct: 260 LTVTTELGHSEISFSDLLNITIGDVLPLQQKIDEPIIVKVDNKPSFYGQV---GQVKKNM 316 Query: 137 GVRVIEILNA 146 V+++E + Sbjct: 317 AVQILEKIKE 326 >gi|167915492|ref|ZP_02502583.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 112] Length = 215 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 41 LIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGD 100 + + +D + + + + D + PV ++ +L + ++ L G Sbjct: 109 PLADSAIDALHDASHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVAQLAGCHPGM 165 Query: 101 VITLDKRVGESVDITINNQKIAKGEITIMEED 132 V+ L GE V I N Q +GE+ + E Sbjct: 166 VLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 196 >gi|253688596|ref|YP_003017786.1| type III secretion system apparatus protein YscQ/HrcQ [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755174|gb|ACT13250.1| type III secretion system apparatus protein YscQ/HrcQ [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 386 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 53/115 (46%), Gaps = 12/115 (10%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 VS P++ ++ + + + + S+N+ E +PV + + GS M Sbjct: 253 ETVSMPSSATDTMFADPHSEASAFEFTQKSDNVTESLPP-------LPVTLHLRCGSLTM 305 Query: 89 QISNLVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 ++ L +L+ G V+TL D G++ + + +A G++ + + G+++ + Sbjct: 306 TLTELQHLASGSVLTLRDVVPGQA-WLYYGDIALASGDLV---DVEGRLGLQITQ 356 >gi|299822274|ref|ZP_07054160.1| flagellar motor switch protein [Listeria grayi DSM 20601] gi|299815803|gb|EFI83041.1| flagellar motor switch protein [Listeria grayi DSM 20601] Length = 82 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 IP+++ LG Q+ NL++L KG + L+ V I I I GEI D Sbjct: 7 IPLQIDFELGRTNQQVGNLLDLKKGTIFRLECSTANVVKIVIAGTCIGYGEILT---KDG 63 Query: 135 HFGVRVIEILNA 146 V+++++ +A Sbjct: 64 KLFVKIVKLGDA 75 >gi|123443728|ref|YP_001007699.1| type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090689|emb|CAL13565.1| type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 312 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 VK+ +LG + + L ++ G V +L V + N Q +A+GE+ + + + Sbjct: 239 VKLTFVLGHSEILLEELAHIQPGSVYSLGADKDREVKVYANKQLVAEGELIYIGDGEE-L 297 Query: 137 GVRVIEI 143 G+ V ++ Sbjct: 298 GLEVTKL 304 >gi|161502065|ref|YP_001569177.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|973277|gb|AAC43944.1| SpaO [Salmonella enterica] gi|973281|gb|AAC43947.1| SpaO [Salmonella enterica] gi|160863412|gb|ABX20035.1| hypothetical protein SARI_00082 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 303 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + ++ + + +PVK++ +L + +++L + + +++L +V+I Sbjct: 212 EEEKNETETAEILPGLSQLPVKLEFVLYRKQVTLADLEAIGQQQLLSLPTNAECNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRV 140 N + GE+ M + GV + Sbjct: 272 NGVLLGNGELVQMNDT---LGVEI 292 >gi|187933524|ref|YP_001885005.1| flagellar motor switch protein FliM [Clostridium botulinum B str. Eklund 17B] gi|187721677|gb|ACD22898.1| flagellar motor switch protein FliM [Clostridium botulinum B str. Eklund 17B] Length = 331 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D I E + I + +++ LG+ + + + + L+KGD+I LD + + + + Sbjct: 239 DEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYV 298 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +++ + + + + GV +++I++ + Sbjct: 299 GDEECYYAKPGVTGK---NMGVAILDIIDKE 326 >gi|332344758|gb|AEE58092.1| Type III secretion apparatus protein [Escherichia coli UMNK88] Length = 81 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + ++PVK++ +LG M + + L +I+L ++++I +N GE+ Sbjct: 2 INSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIRVNGALTGYGELVE 61 Query: 129 MEEDDTHFGVRV 140 +++ GV + Sbjct: 62 VDD---KLGVEI 70 >gi|145301462|ref|YP_001144301.1| type III secretion system protein [Aeromonas salmonicida subsp. salmonicida A449] gi|38201228|emb|CAD56763.1| ascQ protein [Aeromonas salmonicida subsp. salmonicida] gi|66947959|emb|CAE83096.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida] gi|142856344|gb|ABO92553.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 308 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 19/111 (17%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P + Q ++ + S++ E + +P+++ +G + L Sbjct: 204 PFAYCQPNQQHLELTAMHNAASAEPFGPTE--------LDQLPIQVSFEVGRQTLDWHTL 255 Query: 94 VNLSKGDVITLDKRVGESVD----ITINNQKIAKGEITIMEEDDTHFGVRV 140 +L G +I L G +D I N + G + E GVRV Sbjct: 256 TSLQPGALIDL----GTPLDGEVRIISNGHLLGVGRLV---EIQGRLGVRV 299 >gi|34500876|gb|AAQ73904.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum] Length = 379 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 25/142 (17%) Query: 5 VSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEK 64 ++ ++ ++E SM P DT ++ P +++ L DN++E + Sbjct: 243 LAPYTFTVTDMETVSM----PATDTMLAVPHSDASALEHTPTSDNVTENLPP-------- 290 Query: 65 STDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +PV + I GS M ++ L +L+ G V+TL V + + +A G Sbjct: 291 ----------LPVTLHIRCGSLTMTLTELQHLASGSVLTLRDVVQGQAWLYHGDIALASG 340 Query: 125 EITIMEEDDTHFGVRVIEILNA 146 ++ + + G+++ + +A Sbjct: 341 DLV---DVEGRLGLQITQCFSA 359 >gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] Length = 352 Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 35/64 (54%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++++ ++ + L+ V + ILG + + +++L GD++ LD+ ++V I Sbjct: 239 SETSSKKSRNKELQALLGGAKVNVAAILGETKLTLREILDLEVGDIMRLDRPADDTVIIN 298 Query: 116 INNQ 119 ++ + Sbjct: 299 VDGR 302 >gi|331654352|ref|ZP_08355352.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli M718] gi|331047734|gb|EGI19811.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli M718] Length = 315 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + +PVK++ +LG M + + L +I+L ++++I +N Sbjct: 230 ENDDQMINSYEELPVKIEFVLGKKVMNLYEIDELCAKRIISLLPESEKNIEIRVNGALTG 289 Query: 123 KGEITIMEEDDTHFGVRV 140 GE+ +++ GV + Sbjct: 290 YGELVEVDD---KLGVEI 304 >gi|238924157|ref|YP_002937673.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC 33656] gi|238875832|gb|ACR75539.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC 33656] gi|291524890|emb|CBK90477.1| flagellar motor switch protein FliM [Eubacterium rectale DSM 17629] Length = 326 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 9/76 (11%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEE 131 IPVK +LG + + + L GDVI LD V + +DI + N + A + Sbjct: 257 QIPVK--AVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTA-----LPGS 309 Query: 132 DDTHFGVRVIEILNAQ 147 + VR+ ++ + Sbjct: 310 SGDKYAVRITSVVREE 325 >gi|188534811|ref|YP_001908608.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] gi|188029853|emb|CAO97734.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 308 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Query: 60 NILEKSTDNFDLIMN---IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 N E + +++++ +PV ++ +L + ++ L ++ G + L + + I + Sbjct: 209 NNRETYREEEEVLLDWTKLPVDIEFVLDKYTVTLAELEEITPGVALPLKPAAEKKIKIYL 268 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEI 143 N + A GE+ +E+ F V + ++ Sbjct: 269 NRKLFACGELVALED--GSFAVEINQV 293 >gi|973297|gb|AAC43959.1| SpaO [Salmonella enterica] gi|975742|gb|AAC43836.1| SpaO [Salmonella enterica] Length = 303 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + ++ D + ++PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|188588470|ref|YP_001920165.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str. Alaska E43] gi|251780168|ref|ZP_04823088.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498751|gb|ACD51887.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str. Alaska E43] gi|243084483|gb|EES50373.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 331 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 D I E + I + +++ LG+ + + + + L+KGD+I LD + + + + Sbjct: 239 DEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYV 298 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +++ + + + + GV +++I++ + Sbjct: 299 GDEECYYAKPGVTGK---NMGVAILDIIDKE 326 >gi|975746|gb|AAC43839.1| SpaO [Salmonella enterica] gi|975750|gb|AAC43842.1| SpaO [Salmonella enterica] Length = 303 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 57 DSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + ++ D + ++PVK++ +L + ++ L + + +++L +V+I Sbjct: 212 EEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMA 271 Query: 117 NNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 N + GE+ M + GV + E L+ Sbjct: 272 NGVLLGNGELVQMNDT---LGVEIHEWLSE 298 >gi|307725659|ref|YP_003908872.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. CCGE1003] gi|307586184|gb|ADN59581.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. CCGE1003] Length = 511 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEE 131 +++PV+ + + + +S L L G V+ L V E+ + + + Q I GE+ + + Sbjct: 437 LDLPVQF--EVDTVALPLSQLYALRPGYVLELPTPVAEAQLKLVTHGQTIGYGELVTVGD 494 Query: 132 DDTHFGVRV 140 H G+R+ Sbjct: 495 ---HLGIRI 500 >gi|294500928|ref|YP_003564628.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551] gi|294350865|gb|ADE71194.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551] Length = 328 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 SS +++ + I + +++ LG+ + I + + L GDVI L V + Sbjct: 237 QSSKKEPNVQEVEQLKEQINDAELQVVAELGTADISIEDFLALDAGDVIRLQTSVHNPLT 296 Query: 114 ITINN--QKIAK-GEITIMEEDDTHFGVRVIEILNAQ 147 I + + IA+ G++ F V++++ + + Sbjct: 297 IYVGEQPKFIAQPGKV------SRKFAVQILDDVKRR 327 >gi|303240276|ref|ZP_07326795.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus CD2] gi|302592186|gb|EFL61915.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus CD2] Length = 329 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 S+ +S D +L I N V ++ +LG + +++ + L GDVI LD V ++ Sbjct: 235 FSNSEKEKTNESKDTIELKIENTKVPVRAVLGRSTILVNDFLELQPGDVIPLDSSVSGNL 294 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +I + + G ++V E++ + Sbjct: 295 EILVGDLLKFYG---TPGVKKNRVAIKVNEVVRGE 326 >gi|291529031|emb|CBK94617.1| flagellar motor switch protein FliM [Eubacterium rectale M104/1] Length = 326 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 9/76 (11%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEE 131 IPVK +LG + + + L GDVI LD V + +DI + N + A + Sbjct: 257 QIPVK--AVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTA-----LPGS 309 Query: 132 DDTHFGVRVIEILNAQ 147 + VR+ ++ + Sbjct: 310 SGDKYAVRITSVVREE 325 >gi|307944365|ref|ZP_07659706.1| putative surface presentation of antigens (spoa) protein [Roseibium sp. TrichSKD4] gi|307772711|gb|EFO31931.1| putative surface presentation of antigens (spoa) protein [Roseibium sp. TrichSKD4] Length = 348 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 22/116 (18%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG + ID LQ+ + + PT + ++N + + + I Sbjct: 237 EGSELIIDGDLQEISANGPTEMTNKAGEENMGEGAAGKVDE------------------I 278 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES--VDITINNQKIAKGEITIM 129 V + + G + I L L G V+ L VG+ V++ +N QKI +G + + Sbjct: 279 KVNLVVSAGELQLPIGELRELETGSVLRL--PVGQPGNVNLMVNGQKIGEGVLVTI 332 >gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] Length = 332 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + P+ + + LG + I+ + L + DVI L++ + + + + + N+ + + Sbjct: 254 LKQAPLDVIVELGQSQISIAEFLQLGENDVIELNQTIDDPLLVKLGNEPKYYSQ---PGK 310 Query: 132 DDTHFGVRVIEILNAQ 147 V++ + + + Sbjct: 311 VKGKLAVQITDSIVKE 326 >gi|302343739|ref|YP_003808268.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM 2075] gi|301640352|gb|ADK85674.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM 2075] Length = 328 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 8/52 (15%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 V+ + LG + +L+ L GDV+ LD IN +A E Sbjct: 257 EVEFTVELGRTELTSGDLLQLKVGDVLQLDSD--------INGHLVAMVEGV 300 >gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus YK9] gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus YK9] Length = 333 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + + LG + + +NL +GDVITL+K VGE ++I + N+ G Sbjct: 259 LPIAVELGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNKIKFIG---SPGSIKDRV 315 Query: 137 GVRVIEILNA 146 V+V EI++ Sbjct: 316 AVQVDEIVSE 325 >gi|239826624|ref|YP_002949248.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70] gi|239806917|gb|ACS23982.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70] Length = 334 Score = 44.8 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 7/74 (9%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEEDD 133 + + LG+ + I + L GDVI LD+ + + + I + + + I + + + Sbjct: 260 KLPIIAELGTATITIQEFLQLEVGDVIELDQSIQQPLLIKVGDIPKFIGQ-----PGKRN 314 Query: 134 THFGVRVIEILNAQ 147 V++++ + Sbjct: 315 KRLAVQILDAFKGE 328 >gi|6708103|gb|AAF25800.1|AF172245_2 BscQ [Bordetella bronchiseptica] Length = 123 Score = 44.8 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 5/91 (5%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SV 112 + D ++ D IPV++ LG ++ L +L G L++ + + V Sbjct: 32 RTPDPGETPAQAEATLDT-DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPV 90 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + N + G + + D GV + + Sbjct: 91 MVRANGLLLGSGRLV---DIDGRIGVVLQSV 118 >gi|297569682|ref|YP_003691026.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus AHT2] gi|296925597|gb|ADH86407.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus AHT2] Length = 330 Score = 44.8 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 26/47 (55%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + I N V+ ++ LG + ++NL GD +TLD+R E + + + Sbjct: 253 ENIKNAEVEFKVELGRTTVPAREIINLQVGDTLTLDRRTDEQLPVFV 299 >gi|312879599|ref|ZP_07739399.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM 12260] gi|310782890|gb|EFQ23288.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM 12260] Length = 334 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Query: 65 STDNFDLIMN--------IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 N + I + + V + + LG C + + +++ L DVI LD + + + + + Sbjct: 239 GKKNLEGIRDMLSKRLHEVSVPLALELGHCALTLGDVLQLQVNDVIRLDGKATDPLGLRV 298 Query: 117 NNQK 120 N+ Sbjct: 299 GNRV 302 >gi|315281354|ref|ZP_07869994.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|313614993|gb|EFR88497.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|328475657|gb|EGF46406.1| flagellar motor switch domain protein [Listeria monocytogenes 220] Length = 54 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 M + ++ LS GDV+ ++K+ G V+I ++ +K+ GE +M+E +FG+ + EI Sbjct: 1 MPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDE---NFGIVISEI 53 >gi|227114169|ref|ZP_03827825.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 385 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 12/119 (10%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCM 88 VS P + ++ + + + +S +N+ E +PV + + GS M Sbjct: 258 ETVSMPPSATDTMFADPHSEVSALEFTSMRDNVTESLPP-------LPVTLHLRCGSLTM 310 Query: 89 QISNLVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ L +L+ G V+TL D G++ + + +A G++ + + G+++ + ++ Sbjct: 311 TLAELQHLASGSVLTLRDVVPGQA-WLYHGDIALASGDLV---DVEGRLGLQITQRFSS 365 >gi|56460301|ref|YP_155582.1| flagellar motor switch protein FliM [Idiomarina loihiensis L2TR] gi|56179311|gb|AAV82033.1| Flagellar motor switch protein [Idiomarina loihiensis L2TR] Length = 356 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +++ P + E + + D S+ +D + S D IM++PV+M Sbjct: 206 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTD----MRWSKALRDEIMDVPVEM 261 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 L M + +++L +GDVI L+ Sbjct: 262 IAKLAQTEMSLREVMDLREGDVIPLE 287 >gi|46398253|gb|AAS91807.1| AscQ [Aeromonas hydrophila] Length = 308 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 19/111 (17%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P + Q ++ + +D E + +P+++ +G + L Sbjct: 204 PFAYCQPHQQHLELTAMHNATPADPFGPTE--------LEQLPIQVSFEVGRQTLDWHTL 255 Query: 94 VNLSKGDVITLDKRVGESVD----ITINNQKIAKGEITIMEEDDTHFGVRV 140 ++ G +I L G +D I N + G + E GVR+ Sbjct: 256 TSMQPGALIDL----GTPLDGEVRIISNGHSLGVGRLV---EIQGRLGVRI 299 >gi|167840169|ref|ZP_02466853.1| type III secretion system protein BsaV [Burkholderia thailandensis MSMB43] Length = 168 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 15/117 (12%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL + V P ++ D + P + D + Sbjct: 48 EGENIMLNEPLTEPAVDDPHDDLHDEPTTADALPDASPQAFDVAAL-------------- 93 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N +GE+ + E Sbjct: 94 PVTLEFVLHDERVTVAQLAGCHPGLVLPLRGAPGE-VTIRANGLPFGRGELIQVGEQ 149 >gi|323703196|ref|ZP_08114849.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans DSM 574] gi|323531855|gb|EGB21741.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans DSM 574] Length = 330 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V++ +++G + + + + L GDV+ L + + +D+ ++N+ K + Sbjct: 259 VEISVVVGETDISVKDFLQLQVGDVLPLARGFNQDLDMYVDNELKYK---VQVGTVGQSL 315 Query: 137 GVRVIEI 143 V+V + Sbjct: 316 AVQVTSL 322 >gi|167724227|ref|ZP_02407463.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei DM98] Length = 182 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%) Query: 16 EGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI 75 EG ++ ++ PL D+ + + + S + P + D + Sbjct: 63 EGENIMLNEPLADSAIDALHDASHDTSHDEPTAAHAPPAF------------DIDAL--- 107 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 PV ++ +L + ++ L G V+ L GE V I N Q +GE+ + E Sbjct: 108 PVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGEQ 163 >gi|331678848|ref|ZP_08379522.1| typeIII secretion apparatus protein [Escherichia coli H591] gi|331073678|gb|EGI44999.1| typeIII secretion apparatus protein [Escherichia coli H591] Length = 134 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + ++PVK++ +LG M + + L +I+L +++ I Sbjct: 42 NESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIKIR 101 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 102 VNGALTGYGELVEVDD---KLGVEI 123 >gi|317486825|ref|ZP_07945641.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] gi|316921988|gb|EFV43258.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] Length = 388 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 + +S+ ++ + + D +L V + L M + ++ L+ G Sbjct: 292 PEEGPMSDENNTAAGAAPSEGVDTGEL----EVTLTFELERRLMTVRDVETLAPGYTFAF 347 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V + N + + KG + + + GV+V+ + Sbjct: 348 GGDALAPVTLYANGKSVGKGRLV---DLNGTLGVQVVSL 383 >gi|126442961|ref|YP_001063273.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] gi|126222452|gb|ABN85957.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] Length = 424 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D+P + + ++ + P + + + + D + + + + + Sbjct: 300 DSPAEFPADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPAD-LGEVALPVHVE 358 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + + + I+ L L G V+ L + V + Q I G + + H GVR+ Sbjct: 359 IDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLGVRI 414 >gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] Length = 327 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 D+N + D M IPVK +LG+ + +S+ NL GD+I +DK+V + ++ Sbjct: 238 QEKDTNTYEDAIETVIDKAM-IPVK--AVLGTSKISVSDFANLQIGDIIRIDKKVDQELE 294 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + + N K K + + + VRV E++ + Sbjct: 295 VFVGNIKKFKA---LPGYYEDKYAVRVTEVIRKE 325 >gi|134282037|ref|ZP_01768743.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] gi|134246566|gb|EBA46654.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] Length = 424 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D+P + + ++ + P + + + + D + + + + + Sbjct: 300 DSPAEFPADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPAD-LGEVALPVHVE 358 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + + + I+ L L G V+ L + V + Q I G + + H GVR+ Sbjct: 359 IDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLGVRI 414 >gi|255018475|ref|ZP_05290601.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-515] Length = 64 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 ++++ G+ +++ ++ + DVI L + + E + + +N I KG + +++ HFG+ Sbjct: 1 LEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDD---HFGI 57 Query: 139 RVIEIL 144 ++ E++ Sbjct: 58 QMTELV 63 >gi|295399820|ref|ZP_06809801.1| flagellar motor switch protein FliM [Geobacillus thermoglucosidasius C56-YS93] gi|312111668|ref|YP_003989984.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1] gi|294978223|gb|EFG53820.1| flagellar motor switch protein FliM [Geobacillus thermoglucosidasius C56-YS93] gi|311216769|gb|ADP75373.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1] Length = 334 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 + + LG+ + I + + L GDVI LD+ + + + I + + G+ + + Sbjct: 260 KLPIIAELGTATITIQDFLQLEVGDVIELDQSIQQPLLIKVGDIPKFTGQ---PGKRNKR 316 Query: 136 FGVRVIE 142 V++++ Sbjct: 317 LAVQILD 323 >gi|237751752|ref|ZP_04582232.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879] gi|229373118|gb|EEO23509.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879] Length = 356 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+++ ++ + LI V + +LG + ++ L GDVI LD+ ++V ++ Sbjct: 238 SETSGKKSRNRELQALIGGADVHIAAMLGGTQLSFKEILELKVGDVIMLDRVADDTVHVS 297 Query: 116 INNQ 119 I+ + Sbjct: 298 IDGR 301 >gi|237753388|ref|ZP_04583868.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC BAA-430] gi|229375655|gb|EEO25746.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC BAA-430] Length = 352 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 34/64 (53%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+++ ++ + L+ V + +LG + + +++L GD++ LD+ ++V I Sbjct: 239 SETSAKKSRNKELQALLGGAKVNVAAVLGETKLSMHEILDLEVGDIVRLDRPADDTVIIN 298 Query: 116 INNQ 119 ++ + Sbjct: 299 VDGR 302 >gi|291519586|emb|CBK74807.1| Flagellar motor switch protein [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN-QKIAKGEITIM 129 LI + ++ +LG+ + +++ L GD++ LD +V E +D+ + + +K A + Sbjct: 199 LISRAKIPVKAVLGNSVITVADFSQLQVGDIVKLDTKVDEELDVFVGDIRKFA----ALP 254 Query: 130 EEDDTHFGVRVIEILNAQ 147 + VRV +I+ + Sbjct: 255 GASGKEYAVRVTQIIREE 272 >gi|94264049|ref|ZP_01287849.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [delta proteobacterium MLMS-1] gi|93455560|gb|EAT05747.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [delta proteobacterium MLMS-1] Length = 330 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 D I N V +++ LG + ++++NL+ GD I L++R E + + + Sbjct: 252 VDNIKNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQLPVYVAG 301 >gi|171316783|ref|ZP_02905994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MEX-5] gi|171098041|gb|EDT42857.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MEX-5] Length = 377 Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 10/95 (10%) Query: 54 ISSDSNNILEKSTDNFDLI----MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 +++++++ + D D + + +PV + + + I L + +G VI L + Sbjct: 280 MANEADHPGNDTPDRNDPVAIGALEVPVNF--EIDTVALPIDQLAAMRQGYVIELSRTTS 337 Query: 110 E-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + V +T ++Q I GE+ + + H GVR++++ Sbjct: 338 DMQVRLTAHSQVIGHGELVSVGD---HLGVRILQM 369 >gi|218778863|ref|YP_002430181.1| flagellar motor switch protein FliM [Desulfatibacillum alkenivorans AK-01] gi|218760247|gb|ACL02713.1| Flagellar motor switch protein FliM [Desulfatibacillum alkenivorans AK-01] Length = 325 Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEIT 127 + + V++ + LG+ + L++L KGDVI+LD+ E + I + K + Sbjct: 253 VQEVLVEICVELGTAVITAERLMSLRKGDVISLDQFADEPLTAKIQGVPKIAGKAGVV 310 >gi|254575131|gb|ACT68032.1| type III secretion protein [Pantoea stewartii subsp. stewartii DC283] Length = 305 Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +PV ++ +L + + L ++ G + L + +++ I +N + A+GE+ +E + Sbjct: 225 LPVDIEFVLDGGRVTLVELEDIRPGAALPLPQDAEKNMKIYLNKKLFARGELVALE--NG 282 Query: 135 HFGVRVIEI 143 V + + Sbjct: 283 ALAVEMNHV 291 >gi|149194333|ref|ZP_01871430.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2] gi|149135508|gb|EDM23987.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2] Length = 356 Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++++ ++ + L+ V+++ +LG + + +++L GD+I L++ ++V + Sbjct: 240 SETSSRKSRNKELRALLGGAKVELEAVLGYANLTMQEILDLVVGDIIKLNRPADDTVVVK 299 Query: 116 INNQKIAKGEITIMEEDDTHF--GVRVIEILNAQ 147 ++ + E I + F +++ EIL + Sbjct: 300 VDGR-----EKFIADFGIKRFRRAIKIREILKTE 328 >gi|168334557|ref|ZP_02692713.1| flagellar motor switch protein FliM [Epulopiscium sp. 'N.t. morphotype B'] Length = 327 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 11/106 (10%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 D N S S + E++T+ L+ + M+ ++G + + + L GD+I LD Sbjct: 227 DKLNTSYQFQSSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIELQIGDIIRLD 286 Query: 106 KRVGESVDITINNQKIAKGEIT----IMEEDDTHFGVRVIEILNAQ 147 + +D+ + G + + V++ +IL+ + Sbjct: 287 TTIDSLIDVYV-------GNVVKFKAVPGIHKNKSAVQIKQILDKE 325 >gi|78044874|ref|YP_359866.1| flagellar motor switch protein FliM [Carboxydothermus hydrogenoformans Z-2901] gi|77996989|gb|ABB15888.1| flagellar motor switch protein FliM [Carboxydothermus hydrogenoformans Z-2901] Length = 335 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 29/46 (63%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +++ ILG +++ + + GD++ L+++V E +++ + +QK+ Sbjct: 263 ELEVSAILGGTELRVREFLKIEVGDIVVLNRKVDEELELFVEDQKL 308 >gi|118581837|ref|YP_903087.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM 2379] gi|118504547|gb|ABL01030.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM 2379] Length = 325 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 48 DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D + + D I + + +M P+++ + +G+ + + L++L+ GD I LDK Sbjct: 227 DKLKAGMQFDLMAIDPQWSSRLSSGLMEAPLEIVVEMGNANITLGELLDLAAGDTIMLDK 286 Query: 107 RVGESVDITINNQ 119 + + + Sbjct: 287 PCSSELLVKVEGT 299 >gi|152965629|ref|YP_001361413.1| flagellar motor switch protein FliM [Kineococcus radiotolerans SRS30216] gi|151360146|gb|ABS03149.1| flagellar motor switch protein FliM [Kineococcus radiotolerans SRS30216] Length = 314 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 45/103 (43%), Gaps = 3/103 (2%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D ++ P + + ++ S + ++ D+ + +IPV++ Sbjct: 191 LEVDGVAGTATLAMPLDPLSTALTAAELRVASPEELRIRRLMRDRLDDHLE---HIPVEV 247 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + + + M+ ++ L GDV+ L R E +++ ++ +A Sbjct: 248 SVRMKAAQMRPDEILGLVPGDVLRLPHRADEPLEVVSSDAHVA 290 >gi|308173594|ref|YP_003920299.1| flagellar motor switching and energizing component [Bacillus amyloliquefaciens DSM 7] gi|307606458|emb|CBI42829.1| flagellar motor switching and energizing component [Bacillus amyloliquefaciens DSM 7] gi|328553474|gb|AEB23966.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens TA208] gi|328911735|gb|AEB63331.1| flagellar motor switching and energizing component [Bacillus amyloliquefaciens LL3] Length = 332 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + SD N + T + + IM + + +LG+ + I ++L GD ITLDK V + + Sbjct: 236 MQSDRNEAKPEETKSLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPL 295 Query: 113 DITINNQK 120 + + N+ Sbjct: 296 TVLVGNKP 303 >gi|326791530|ref|YP_004309351.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM 5427] gi|326542294|gb|ADZ84153.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM 5427] Length = 328 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + ++ ILG + + + LS+ D++ LDK + +DI + N G E Sbjct: 259 IPIKAILGKTHITVREFLELSRSDIVKLDKDIDSGLDIYVGNILKFTG---SPGEYKNKV 315 Query: 137 GVRVIEILNAQ 147 +++ ++ + Sbjct: 316 AIKINHVIQRE 326 >gi|28628131|gb|AAO34615.1| HrcQ [Erwinia chrysanthemi] Length = 413 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 12/123 (9%) Query: 22 IDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM-- 79 + P DT V T + D + + P + + P+ + Sbjct: 285 VTTPFDDTAVFDNTAAFDA-----DTASEASPYAEYGAPDGDNPAGALSGYALPPLTLAL 339 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138 + G + + +L L+ G V+TL + GE+ + Q +A GE+ + + G+ Sbjct: 340 TVRCGYLTLTLQDLQQLAPGSVLTLQQATPGEAT-LYHGEQPLALGELV---DVEGRLGL 395 Query: 139 RVI 141 ++ Sbjct: 396 QIT 398 >gi|328948403|ref|YP_004365740.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM 2489] gi|328448727|gb|AEB14443.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM 2489] Length = 344 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK-RVGESVDITINNQKIAKGEITI 128 + + ++ +++ +GS + I ++++L GDVI L+ +VGE + +++ ++K + + Sbjct: 253 EKLADVEMELVADIGSINVPIRDVLSLRTGDVIRLNTIKVGEPLTLSVGSKKKFYCQPGV 312 Query: 129 MEEDDTHFGVRVIEILNAQ 147 + + V++IE ++ Q Sbjct: 313 VGK---KVAVQIIEKIDEQ 328 >gi|307131229|ref|YP_003883245.1| HrcQ [Dickeya dadantii 3937] gi|306528758|gb|ADM98688.1| HrcQ [Dickeya dadantii 3937] Length = 382 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 10/136 (7%) Query: 10 YIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQ-KNDVDNISEPISSDSNNILEKSTDN 68 + LE + I P DT T + + D + P + S E T Sbjct: 238 FTVTELEECPVAI--PFDDTTPFDDTIPFDDAAPFETDTAPETSPHAGFSAPDGEHHTGA 295 Query: 69 FDLIMNIPVKM--QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGE 125 P+ + + G + + +L L+ G V+TL + GE+ + Q +A GE Sbjct: 296 PSGYALPPLTLALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEAT-LYHGEQPLALGE 354 Query: 126 ITIMEEDDTHFGVRVI 141 + + + G+++ Sbjct: 355 LV---DVEGRLGLQIT 367 >gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] Length = 372 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 L+ V ++ +LG+ + + ++++L GD++ L + V I ++ + +G+ + Sbjct: 257 LLGGAKVGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADDIVTICVDGKDRFRGK---IG 313 Query: 131 EDDTHFGVRVIEILNAQ 147 V+V EI++ + Sbjct: 314 LRRFRKSVQVTEIIDTE 330 >gi|51103118|gb|AAT96261.1| HrcQ-like protein [Pseudomonas viridiflava] gi|51103160|gb|AAT96302.1| HrcQ-like protein [Pseudomonas viridiflava] Length = 354 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 43/97 (44%), Gaps = 5/97 (5%) Query: 46 DVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +D+I E + + + D ++ + + + G+ + + L +L+ G V+T + Sbjct: 256 HLDDIDEHEHHPEADSTDANEDGLQRFNDLSMALTVRAGNLSLSLGQLRSLAVGSVLTFN 315 Query: 106 K-RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 G ++ + + +A GE+ + + G+++ Sbjct: 316 GCTPGHAM-LHHGERVLAHGELV---DVEGRLGLQIT 348 >gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM 2228] Length = 335 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V++ +LGS + + + + L GDV+ LDK+V E+ ++ I + K E + +++ Sbjct: 259 VEVDAVLGSTEITVEDFLYLQPGDVVRLDKKVEENAELKIGRSR--KYEAVVGNKNNHK 315 >gi|269796385|ref|YP_003315840.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542] gi|269098570|gb|ACZ23006.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542] Length = 315 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 48/110 (43%), Gaps = 12/110 (10%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 +P E ++Q++ + +SD + + +PV + + + + + Sbjct: 212 APMRAGEGVVQRSKDELAEAAAASDRLHRTMST---------VPVDVHVRMRPVTVHPRD 262 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 +V+L+ G+VI L+ V +D+ ++ +A G + + ++++ Sbjct: 263 VVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHG---VAGNNGRQLACKIVD 309 >gi|227328492|ref|ZP_03832516.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 297 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 66/146 (45%), Gaps = 27/146 (18%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61 + ++ ++ ++E SM P DT +++P +++ L DN++E + Sbjct: 158 LSALAPYTFTVTDMETVSM----PATDTMLAAPHSDASALEYTPTSDNVTENLPP----- 208 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120 +PV + I GS M ++ L +L+ G V+TL D G++ + + Sbjct: 209 -------------LPVTLHIRCGSLTMTLAKLQHLASGSVLTLRDVVPGQA-WLYHGDIA 254 Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146 +A G++ + + G+++ + +A Sbjct: 255 LASGDLV---DVEGRLGLQITQCFSA 277 >gi|82795277|gb|ABB91646.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tagetis] Length = 135 Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 4/100 (4%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDV 101 D EPI D + ++ + + ++P+ + + G + ++ L L G V Sbjct: 34 QPGLPSDEPDEPIGPDEQDEQDEHSP-LSAVDSLPLDLTLRCGELRLTLAELRRLDAGTV 92 Query: 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + + + + +A+GE+ + D G+++ Sbjct: 93 LEVSGIAPGYATLCHGERVVAEGELV---DVDGRLGLQIT 129 >gi|332280452|ref|ZP_08392865.1| surface presentation of antigens protein SpaO [Shigella sp. D9] gi|332102804|gb|EGJ06150.1| surface presentation of antigens protein SpaO [Shigella sp. D9] Length = 190 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + +PVK++ +LG + + + +L +I+L ++++I Sbjct: 98 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 157 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 158 VNGALTGYGELVEVDD---KLGVEI 179 >gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] Length = 335 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S + + + + IP++++ +LG+ + + + L GDV+ LD+ + E + Sbjct: 240 SKTGDEQASRENLLRKVRQIPIELRAVLGTARITLHEALQLQVGDVVPLDQHLDEKAAVY 299 >gi|268592376|ref|ZP_06126597.1| putative surface presentation of antigens protein [Providencia rettgeri DSM 1131] gi|291312162|gb|EFE52615.1| putative surface presentation of antigens protein [Providencia rettgeri DSM 1131] Length = 310 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 62/144 (43%), Gaps = 4/144 (2%) Query: 4 KVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSE--MLIQKNDVDNISEPISSDSNNI 61 K+ + ++D L + + ++ + ++ E ++I++ E + Sbjct: 163 KLLQTIELRDVLSIQQLQLNISVAGQVLARFQKQDEGLLMIEELVAPESEEEFVFPEEDE 222 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +++ F+ + + +K+ +LG + + L + G + ++ + V + N Q I Sbjct: 223 MQEIVRPFN-VKEMNIKLTFVLGHSDITVDELSKMEPGYIYSIGENKEREVKVYANKQFI 281 Query: 122 AKGEITIMEEDDTHFGVRVIEILN 145 A+GE+ + D G+ + +++ Sbjct: 282 AEGELIYIGNSDE-LGLEITHVVS 304 >gi|91782702|ref|YP_557908.1| putative type III secretion protein, FliN like [Burkholderia xenovorans LB400] gi|91686656|gb|ABE29856.1| Putative type III secretion protein, FliN like protein [Burkholderia xenovorans LB400] Length = 323 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDI 114 +D +E +++ I +I + +LG+ + ++ L +L +G ++ E V + Sbjct: 232 TDETQPVEMTSELL-PIDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTL 290 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVI 141 A+GE+ + + GVRV Sbjct: 291 LCQGIPFARGELI---DIEGALGVRVT 314 >gi|167464156|ref|ZP_02329245.1| flagellar motor switch protein FliM [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382382|ref|ZP_08056289.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153735|gb|EFX46110.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 332 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 24/44 (54%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + LGS + + +NLS GDVITL K V E + I I ++ Sbjct: 258 KLPFVAELGSSHITVHEFLNLSVGDVITLQKPVNEPLKIRIGDK 301 >gi|95929861|ref|ZP_01312602.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM 684] gi|95134157|gb|EAT15815.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM 684] Length = 329 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 24/48 (50%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 + ++ V + L + + +++L GD++ LD V + V + + + Sbjct: 256 VEDMDVAVSAQLAQITLNVREILDLRVGDILQLDCSVDQPVSVMVEGK 303 >gi|89098632|ref|ZP_01171514.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911] gi|89086594|gb|EAR65713.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911] Length = 332 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 3/89 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + E+ D I V + LGS + I + + L GDVI L++ + + Sbjct: 237 QTEKKEREPEELGRLEDSIQKAQVPVSAELGSADISIQDFLMLDLGDVIELNQAIDRPLT 296 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIE 142 I I + G+ + + +++++ Sbjct: 297 IKIGDIPKFTGQ---PGKANKKLAIQILD 322 >gi|330957489|gb|EGH57749.1| type III secretion protein HrcQb [Pseudomonas syringae pv. maculicola str. ES4326] Length = 135 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 ++L + + + D + + E +D + +++ + D Sbjct: 3 TEDLYQDEVEMLDEYDDQSPDHLSEQQEEQHWPDDEYAEQASGYAPADDERQDEQDESPA 62 Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++ +++ + G + ++ L L G V+ + + Q +A+GE+ + Sbjct: 63 LDSLELELTLRCGELRLTLAELRRLDAGSVLEVSGVAPGHATLCHGEQVVAEGELV---D 119 Query: 132 DDTHFGVRVIEILN 145 + G+++ ++ Sbjct: 120 VEGRLGLQITRLVT 133 >gi|209920318|ref|YP_002294402.1| putative type III secretion protein [Escherichia coli SE11] gi|209913577|dbj|BAG78651.1| putative type III secretion protein [Escherichia coli SE11] Length = 190 Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + +PVK++ +LG + + + +L +I+L ++++I Sbjct: 98 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 157 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 158 VNGALTGYGELVEVDD---KLGVEI 179 >gi|254255056|ref|ZP_04948373.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia dolosa AUO158] gi|124899701|gb|EAY71544.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia dolosa AUO158] Length = 311 Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + ++P+++ +L C +S++ + G + L V+IT +A GE+ E Sbjct: 236 VSDLPIRIDFVLHRCTTSVSDVDAFAHGTFLPLAADAERRVEITTGGTVLAVGELV---E 292 Query: 132 DDTHFGVRVIEILNAQ 147 D GV + ++ A+ Sbjct: 293 LDGRLGVEIHQVARAR 308 >gi|330950823|gb|EGH51083.1| type III secretion protein HrcQb [Pseudomonas syringae Cit 7] Length = 133 Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 47/119 (39%), Gaps = 6/119 (5%) Query: 29 TNVSSPTNNSEMLIQKND--VDNISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGS 85 + P Q++D ++ SD+ + + + +++ + + + + G Sbjct: 15 DDYEEPVPEQADQQQRDDEYAEHAFGYADSDAEHEEQSGDHHESPMLDSLELDLTLRCGE 74 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + ++ L L G ++ + + Q +A+GE+ + + G+++ ++ Sbjct: 75 LRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELV---DVEGRLGLQITRLV 130 >gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus B316] gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus B316] Length = 327 Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 8/97 (8%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 S+ N E D + ++ + V ++ ILG C + +S+ V+L GD+I LD RV + Sbjct: 234 FSTMQKNADEDYEDTLESMVKRVDVPVKAILGKCNVSVSDFVHLQAGDIIRLDNRVNTDM 293 Query: 113 DITINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + + N + A + + VR+ ++ + Sbjct: 294 QVYVGNIFKFTA-----LPGTAKDKYAVRITSVVREE 325 >gi|323341356|ref|ZP_08081600.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC 25644] gi|323091233|gb|EFZ33861.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC 25644] Length = 336 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + N+ + ++ LG M ++ +NL GDVI LDK+ ++ I + + Sbjct: 261 LNNVEMVIETKLGDAQMSFADFLNLEAGDVIRLDKKTTSPLETYIEGEPFFY---VKPGQ 317 Query: 132 DDTHFGVRVIE 142 D + +++ Sbjct: 318 KDGQLAIELLD 328 >gi|312972917|ref|ZP_07787090.1| surface presentation of antigens spaO domain protein [Escherichia coli 1827-70] gi|310332859|gb|EFQ00073.1| surface presentation of antigens spaO domain protein [Escherichia coli 1827-70] Length = 81 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 + ++PVK++ +LG M + + L + +L ++++I +N GE+ Sbjct: 2 INSFEDLPVKIEFVLGKKIMNLYEIDELCAKRITSLLSESEKNIEIRVNGALTGYGELVE 61 Query: 129 MEEDDTHFGVRV 140 +++ GV + Sbjct: 62 VDD---KLGVEI 70 >gi|53716432|ref|YP_106204.1| type III secretion inner membrane protein SctQ [Burkholderia mallei ATCC 23344] gi|124382042|ref|YP_001025752.1| type III secretion inner membrane protein SctQ [Burkholderia mallei NCTC 10229] gi|126447332|ref|YP_001077837.1| type III secretion inner membrane protein SctQ [Burkholderia mallei NCTC 10247] gi|254176060|ref|ZP_04882718.1| type III secretion inner membrane protein SctQ [Burkholderia mallei ATCC 10399] gi|254359171|ref|ZP_04975443.1| type III secretion inner membrane protein SctQ [Burkholderia mallei 2002721280] gi|52422402|gb|AAU45972.1| type III secretion inner membrane protein SctQ [Burkholderia mallei ATCC 23344] gi|126240186|gb|ABO03298.1| type III secretion inner membrane protein SctQ [Burkholderia mallei NCTC 10247] gi|148028358|gb|EDK86318.1| type III secretion inner membrane protein SctQ [Burkholderia mallei 2002721280] gi|160697102|gb|EDP87072.1| type III secretion inner membrane protein SctQ [Burkholderia mallei ATCC 10399] gi|261826615|gb|ABM99775.2| type III secretion inner membrane protein SctQ [Burkholderia mallei NCTC 10229] Length = 645 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + ++ D+ + D + + Sbjct: 523 PADRAGDLPAPSAAHSSPGSLAGLPAGLQ-----ADAPPRDARYAAPEPAD----LGEVA 573 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 574 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 630 Query: 136 FGVRV 140 GVR+ Sbjct: 631 LGVRI 635 >gi|329889297|ref|ZP_08267640.1| type III secretion system protein [Brevundimonas diminuta ATCC 11568] gi|328844598|gb|EGF94162.1| type III secretion system protein [Brevundimonas diminuta ATCC 11568] Length = 209 Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 42/106 (39%), Gaps = 12/106 (11%) Query: 43 QKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +++ + + P + D + + + + P+ + + LG + + L L G ++ Sbjct: 112 KESRMTEAAAPPAEDEHGLTPGA--------DTPIAVTVDLGETAVPLKTLTELRPGAIL 163 Query: 103 TLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 L E V + Q A+G + + E + V + + + + Sbjct: 164 PLTGLDAEMRVTLRSAGQAFARGRLVSLGEA---YAVLIDAVADPK 206 >gi|207110176|ref|ZP_03244338.1| flagellar motor switch protein FliM [Helicobacter pylori HPKX_438_CA4C1] Length = 125 Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 45 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 104 Query: 116 INNQK 120 ++ +K Sbjct: 105 VHKKK 109 >gi|227357592|ref|ZP_03841945.1| type III secretion system protein [Proteus mirabilis ATCC 29906] gi|227162302|gb|EEI47306.1| type III secretion system protein [Proteus mirabilis ATCC 29906] Length = 309 Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + I IP+ + +L + + I L L+ G L ++I N + IA+GE+ Sbjct: 232 DLNSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELI 291 Query: 128 IMEE 131 +++ Sbjct: 292 KIKD 295 >gi|293449186|ref|ZP_06663607.1| type III secretion protein SctQ [Escherichia coli B088] gi|291322276|gb|EFE61705.1| type III secretion protein SctQ [Escherichia coli B088] gi|323183416|gb|EFZ68813.1| surface presentation of antigens family protein [Escherichia coli 1357] Length = 173 Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + +PVK++ +LG + + + +L +I+L ++++I Sbjct: 81 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 140 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162 >gi|197286518|ref|YP_002152390.1| type III secretion system protein [Proteus mirabilis HI4320] gi|194684005|emb|CAR45295.1| type III secretion system protein [Proteus mirabilis HI4320] Length = 309 Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + I IP+ + +L + + I L L+ G L ++I N + IA+GE+ Sbjct: 232 DLNSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELI 291 Query: 128 IMEE 131 +++ Sbjct: 292 KIKD 295 >gi|258516873|ref|YP_003193095.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans DSM 771] gi|257780578|gb|ACV64472.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans DSM 771] Length = 331 Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 45 NDVDNISEPISSDSNNILEKST-DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 + + ++ +SD++ + S N +++PV + ++LG + L L G +T Sbjct: 228 KEAEIVANNANSDNDQVAVASKLPNLTAALSLPVNLTVVLGKTLSTVEELARLEIGKKLT 287 Query: 104 LDKRVGESVDITINNQKIAKGEIT 127 L E V+I + + KG++ Sbjct: 288 L-PLSAECVEIYAGDTLVGKGKLI 310 >gi|308068664|ref|YP_003870269.1| flagellar motor switch protein fliM [Paenibacillus polymyxa E681] gi|305857943|gb|ADM69731.1| Flagellar motor switch protein fliM [Paenibacillus polymyxa E681] Length = 331 Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 +S+ + + D L + + + LG + ++ + LS GDVI+L+K V E + Sbjct: 234 FTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGL 293 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I + + G ++ + V++ EI+N Sbjct: 294 SIRVGEKLKFMGSPGMVRD---RVAVQIDEIVNE 324 >gi|154686048|ref|YP_001421209.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens FZB42] gi|154351899|gb|ABS73978.1| FliM [Bacillus amyloliquefaciens FZB42] Length = 332 Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + SD N + T + IM + + +LG+ + I ++L GD ITLDK V + + Sbjct: 236 MQSDRNEAKPEETKLLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPL 295 Query: 113 DITINNQK 120 + + N+ Sbjct: 296 TVLVGNKP 303 >gi|300815708|ref|ZP_07095932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 107-1] gi|300531637|gb|EFK52699.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia coli MS 107-1] Length = 173 Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + +PVK++ +LG + + + +L +I+L ++++I Sbjct: 81 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 140 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162 >gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans ISDg] gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans ISDg] Length = 325 Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITIMEED 132 IPVK +LG + ++ L+N+ KGD+I LD+++ + + + + N + A + Sbjct: 258 IPVK--AVLGKSSISLNELINMQKGDIIKLDRKIDDELSVYVGNIKKFTA-----LPGAS 310 Query: 133 DTHFGVRVIEILNAQ 147 + V++ I+ + Sbjct: 311 SDSYAVKISTIIREE 325 >gi|295706274|ref|YP_003599349.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319] gi|294803933|gb|ADF40999.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319] Length = 333 Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 SS +++ + I + +++ LG + I + + L GDVI L V + Sbjct: 237 QSSKKEPNVQEVEQLKEQINDAELQVVAELGKADISIEDFLALDAGDVIRLQTSVHNPLT 296 Query: 114 ITI 116 I + Sbjct: 297 IYV 299 >gi|260768787|ref|ZP_05877721.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972] gi|260616817|gb|EEX42002.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972] Length = 253 Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + +IP + ++L + I+++ ++ GD I L K + +D+ + NQ + KG++ + Sbjct: 188 LNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY--DLLDVNVENQTLFKGQLIV--G 243 Query: 132 DDTHFGVR 139 ++ GV+ Sbjct: 244 ENAQLGVK 251 >gi|170698359|ref|ZP_02889433.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] gi|170136698|gb|EDT04952.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] Length = 374 Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 7/97 (7%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIP---VKMQIILGSCCMQISNLVNLSKGDVITL-DK 106 +P S TD+ D ++I + +++ + + M ++ L L G V+ L Sbjct: 274 EDPTMSHDTQFNAPLTDSIDTPVDISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 333 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V + Q I GE+ + + H GVR++++ Sbjct: 334 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 367 >gi|310641555|ref|YP_003946313.1| heat shock protein hslvu, atpase subunit hslu [Paenibacillus polymyxa SC2] gi|309246505|gb|ADO56072.1| Heat shock protein HslVU, ATPase subunit HslU [Paenibacillus polymyxa SC2] Length = 332 Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 +S+ + + D L + + + LG + ++ + LS GDVI+L+K V E + Sbjct: 235 FTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGL 294 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 I + + G ++ + V++ EI+N Sbjct: 295 SIRVGEKLKFMGSPGMVRD---RVAVQIDEIVNE 325 >gi|208434362|ref|YP_002266028.1| flagellar motor switch protein [Helicobacter pylori G27] gi|208432291|gb|ACI27162.1| flagellar motor switch protein [Helicobacter pylori G27] Length = 334 Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 218 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 277 Query: 116 INNQK 120 ++ +K Sbjct: 278 VHKKK 282 >gi|172064927|ref|YP_001815639.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] gi|171997169|gb|ACB68086.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] Length = 374 Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 7/97 (7%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIP---VKMQIILGSCCMQISNLVNLSKGDVITL-DK 106 +P S TD+ D ++I + +++ + + M ++ L L G V+ L Sbjct: 274 EDPTMSHDTQFNAPLTDSIDTPVDISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 333 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V + Q I GE+ + + H GVR++++ Sbjct: 334 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 367 >gi|62286914|sp|Q60235|HRCQB_PSESY RecName: Full=Type III secretion protein HrcQb gi|818890|gb|AAB05074.1| HrpU [Pseudomonas syringae pv. syringae] gi|148562539|gb|ABQ88358.1| HrcQb [Pseudomonas syringae pv. syringae] Length = 133 Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 47/119 (39%), Gaps = 6/119 (5%) Query: 29 TNVSSPTNNSEMLIQKND--VDNISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGS 85 + P Q++D ++ SD+ + + + +++ + + + + G Sbjct: 15 DDYEEPVPEQADQQQRDDEYAEHAFGYADSDAEHEEQSGDHHESPMLDSLELDLTLRCGD 74 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + ++ L L G ++ + + Q +A+GE+ + + G+++ ++ Sbjct: 75 LRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELV---DVEGRLGLQITRLV 130 >gi|291538507|emb|CBL11618.1| flagellar motor switch protein FliM [Roseburia intestinalis XB6B4] Length = 326 Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITI 128 LI P+ ++ +LG+ + +++ + L GD+I LD +V + + + + + + A + Sbjct: 252 LISKAPMPIKAVLGNSSISVNDFLGLQVGDIIRLDTKVDQELSVFVGSIKKFTA-----L 306 Query: 129 MEEDDTHFGVRVIEILNAQ 147 E + VR+ ++ + Sbjct: 307 PGETGDDYAVRITSVIREE 325 >gi|197120188|ref|YP_002140615.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem] gi|197089548|gb|ACH40819.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem] Length = 325 Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 + +M P+ + + +G + +S+L++L+ GD I L+ + + + + K G I Sbjct: 248 EELMGAPMDLSVEMGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTKKFMG---IA 304 Query: 130 EEDDTHFGVRVIEILNA 146 + V++ LNA Sbjct: 305 GVSGGNKAVQITRALNA 321 >gi|226198463|ref|ZP_03794031.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei Pakistan 9] gi|225929520|gb|EEH25539.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei Pakistan 9] Length = 432 Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 310 PADRAGDLPAPSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 360 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 361 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 417 Query: 136 FGVRV 140 GVR+ Sbjct: 418 LGVRI 422 >gi|217422634|ref|ZP_03454137.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 576] gi|217394865|gb|EEC34884.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 576] Length = 432 Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 310 PADRAGDLPAPSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 360 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 361 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 417 Query: 136 FGVRV 140 GVR+ Sbjct: 418 LGVRI 422 >gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] Length = 366 Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 L+ V ++ LG + + +++ L GDVI L + V + ++ ++ +GE + Sbjct: 254 LLGGAKVNVEANLGDADLSMHDILELKVGDVIRLSSAANDIVTVAVDGKERFRGE---IG 310 Query: 131 EDDTHFGVRVIEILNAQ 147 + + EI+ + Sbjct: 311 LRRFRKSISITEIIETE 327 >gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC 49176] gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC 49176] Length = 326 Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 6/98 (6%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 S D N E+ + D IP++ +LG + +++ VNL GDV+ L+ +V Sbjct: 234 FSALQEKDDTNYGEQIEEIIDR-AQIPIR--AVLGKSVVSVNDFVNLQPGDVVRLNAKVD 290 Query: 110 ESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + +D+ + N K K + + +R+ +++ + Sbjct: 291 DELDVFVGNMKKFKA---LPGASSGVYALRITKVIREE 325 >gi|240145492|ref|ZP_04744093.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82] gi|257202307|gb|EEV00592.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82] gi|291536015|emb|CBL09127.1| flagellar motor switch protein FliM [Roseburia intestinalis M50/1] Length = 326 Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITI 128 LI P+ ++ +LG+ + +++ + L GD+I LD +V + + + + + + A + Sbjct: 252 LISKAPMPIKAVLGNSSISVNDFLGLQVGDIIRLDTKVDQELSVFVGSIKKFTA-----L 306 Query: 129 MEEDDTHFGVRVIEILNAQ 147 E + VR+ ++ + Sbjct: 307 PGETGDDYAVRITSVIREE 325 >gi|253702497|ref|YP_003023686.1| flagellar motor switch protein FliM [Geobacter sp. M21] gi|251777347|gb|ACT19928.1| flagellar motor switch protein FliM [Geobacter sp. M21] Length = 325 Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 28/51 (54%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + +M P+ + + +G + +S+L++L+ GD I L+ + + + + K Sbjct: 248 EELMGAPMDLSVEMGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTK 298 >gi|109947667|ref|YP_664895.1| flagellar motor switch protein FliM [Helicobacter acinonychis str. Sheeba] gi|109714888|emb|CAJ99896.1| fliM [Helicobacter acinonychis str. Sheeba] Length = 354 Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 38/65 (58%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ ++ V M ++LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNRELQALLSSVSVDMIVLLGAVELSLKEMLDLDVGDTIRLNKVANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|302392382|ref|YP_003828202.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM 5501] gi|302204459|gb|ADL13137.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM 5501] Length = 333 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 43/95 (45%), Gaps = 7/95 (7%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 +S + E+ D + + + LG+ + +++L++L GDVI +D++ + + Sbjct: 238 TSRDSASSEELNKLKDRLSKAKLPVIANLGTTNITVADLLDLQPGDVIRMDQKATKEAVV 297 Query: 115 TINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + N + I K + + + + +L+ + Sbjct: 298 KVGNKEKFIGKPGVV-----GSKLAIEISSVLDKE 327 >gi|296162489|ref|ZP_06845280.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. Ch1-1] gi|295887302|gb|EFG67129.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia sp. Ch1-1] Length = 323 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDI 114 +D +E +++ I +I + +LG+ + ++ L +L +G ++ E V + Sbjct: 232 TDETQPVEVTSELL-PIDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTL 290 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVI 141 A+GE+ + + GVRV Sbjct: 291 LCQGIPFARGELI---DIEGAMGVRVT 314 >gi|186893684|ref|YP_001870796.1| type III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|186696710|gb|ACC87339.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia pseudotuberculosis PB1/+] Length = 320 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++ S+P++ S + ++P + + +G + + + L+ G + Sbjct: 217 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+I +N Q + +G + +E VR+ + Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 309 >gi|167467560|ref|ZP_02332264.1| type III secretion system protein [Yersinia pestis FV-1] Length = 270 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++ S+P++ S + ++P + + +G + + + L+ G + Sbjct: 167 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 224 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+I +N Q + +G + +E VR+ + Sbjct: 225 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 259 >gi|162419017|ref|YP_001608229.1| type III secretion system protein [Yersinia pestis Angola] gi|162351832|gb|ABX85780.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis Angola] Length = 294 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++ S+P++ S + ++P + + +G + + + L+ G + Sbjct: 191 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 248 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+I +N Q + +G + +E VR+ + Sbjct: 249 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 283 >gi|51594681|ref|YP_068872.1| type III secretion system protein [Yersinia pseudotuberculosis IP 32953] gi|51587963|emb|CAH19566.1| type III secretion system apparatus protein, SsaQ [Yersinia pseudotuberculosis IP 32953] Length = 306 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++ S+P++ S + ++P + + +G + + + L+ G + Sbjct: 203 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 260 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+I +N Q + +G + +E VR+ + Sbjct: 261 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 295 >gi|150260682|ref|ZP_01917410.1| type III secretion system apparatus protein [Yersinia pestis CA88-4125] gi|218927476|ref|YP_002345351.1| type III secretion system protein [Yersinia pestis CO92] gi|115346087|emb|CAL18955.1| type III secretion system apparatus protein [Yersinia pestis CO92] gi|149290090|gb|EDM40167.1| type III secretion system apparatus protein [Yersinia pestis CA88-4125] Length = 306 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++ S+P++ S + ++P + + +G + + + L+ G + Sbjct: 203 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 260 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+I +N Q + +G + +E VR+ + Sbjct: 261 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 295 >gi|22124443|ref|NP_667866.1| type III secretion system protein [Yersinia pestis KIM 10] gi|45440279|ref|NP_991818.1| type III secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|108810003|ref|YP_653919.1| type III secretion system protein [Yersinia pestis Antiqua] gi|108813558|ref|YP_649325.1| type III secretion system protein [Yersinia pestis Nepal516] gi|145600948|ref|YP_001165024.1| type III secretion system protein [Yersinia pestis Pestoides F] gi|165926685|ref|ZP_02222517.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936446|ref|ZP_02225014.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. IP275] gi|166010408|ref|ZP_02231306.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213947|ref|ZP_02239982.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402221|ref|ZP_02307694.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418911|ref|ZP_02310664.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426186|ref|ZP_02317939.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229836524|ref|ZP_04456690.1| type III secretion system apparatus protein [Yersinia pestis Pestoides A] gi|229840132|ref|ZP_04460291.1| type III secretion system apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842213|ref|ZP_04462368.1| type III secretion system apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904048|ref|ZP_04519161.1| type III secretion system apparatus protein [Yersinia pestis Nepal516] gi|270488966|ref|ZP_06206040.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|294502342|ref|YP_003566404.1| type III secretion protein [Yersinia pestis Z176003] gi|21957230|gb|AAM84117.1|AE013654_6 putative type III secretion system component [Yersinia pestis KIM 10] gi|45435135|gb|AAS60695.1| type III secretion system apparatus protein [Yersinia pestis biovar Microtus str. 91001] gi|108777206|gb|ABG19725.1| type III secretion system apparatus protein [Yersinia pestis Nepal516] gi|108781916|gb|ABG15974.1| type III secretion system apparatus protein [Yersinia pestis Antiqua] gi|145212644|gb|ABP42051.1| type III secretion system apparatus protein [Yersinia pestis Pestoides F] gi|165915562|gb|EDR34171.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. IP275] gi|165921308|gb|EDR38532.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990498|gb|EDR42799.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204922|gb|EDR49402.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. B42003004] gi|166962905|gb|EDR58926.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048402|gb|EDR59810.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054897|gb|EDR64699.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679818|gb|EEO75921.1| type III secretion system apparatus protein [Yersinia pestis Nepal516] gi|229690523|gb|EEO82577.1| type III secretion system apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696498|gb|EEO86545.1| type III secretion system apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706208|gb|EEO92216.1| type III secretion system apparatus protein [Yersinia pestis Pestoides A] gi|262360422|gb|ACY57143.1| type III secretion protein [Yersinia pestis D106004] gi|262364372|gb|ACY60929.1| type III secretion protein [Yersinia pestis D182038] gi|270337470|gb|EFA48247.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|294352801|gb|ADE63142.1| type III secretion protein [Yersinia pestis Z176003] gi|320013866|gb|ADV97437.1| type III secretion system apparatus protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 320 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++ S+P++ S + ++P + + +G + + + L+ G + Sbjct: 217 QQINEASDPLACGSRAESPPLAAV--QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274 Query: 105 DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+I +N Q + +G + +E VR+ + Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDE---KLVVRIAQ 309 >gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM 6578] Length = 341 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 32/51 (62%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + I ++ V + + +GS +++ +++++ KGDVI L RV E + + I N+ Sbjct: 254 ERISSVEVNLVVEVGSMNLKMRDILSIQKGDVIMLPTRVKEPLVLKIENRP 304 >gi|237510474|ref|ZP_04523189.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] gi|235002679|gb|EEP52103.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] Length = 424 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 19/126 (15%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDN-ISEPISSDSNNILEKSTDNFDLIMNI 75 D P SSP + + + D + P +D + + Sbjct: 306 PADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPAD--------------LGEV 351 Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDT 134 + + + + + + I+ L L G V+ L + V + Q I G + + Sbjct: 352 ALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---A 408 Query: 135 HFGVRV 140 H GVR+ Sbjct: 409 HLGVRI 414 >gi|288573016|ref|ZP_06391373.1| flagellar motor switch protein FliM [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568757|gb|EFC90314.1| flagellar motor switch protein FliM [Dethiosulfovibrio peptidovorans DSM 11002] Length = 334 Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + V + + LG + + +++ L GDVI LD + + V + + ++ G D Sbjct: 258 VKVPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRVRVGSRIKFTGR---PGTVDG 314 Query: 135 HFGVRVIEILN 145 + V V+E+ + Sbjct: 315 RYSVEVLEVAD 325 >gi|126458111|ref|YP_001076229.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|242311035|ref|ZP_04810052.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 1106b] gi|126231879|gb|ABN95292.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 1106a] gi|242134274|gb|EES20677.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei 1106b] Length = 436 Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 314 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 364 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 365 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 421 Query: 136 FGVRV 140 GVR+ Sbjct: 422 LGVRI 426 >gi|260886644|ref|ZP_05897907.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] gi|330839524|ref|YP_004414104.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] gi|260863787|gb|EEX78287.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] gi|329747288|gb|AEC00645.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] Length = 334 Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 24/45 (53%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 P+ + + LG+ M I + L GDV+ LD +V + + I + + Sbjct: 260 PIPLIVELGTIDMTIREFLTLGFGDVLQLDTKVKDELKILVGQKP 304 >gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] Length = 336 Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 EK + ++ + V I LG + I +++ L GD++ + + V+I NN++ Sbjct: 247 GEKEDEIMHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIHFNNKQK 306 Query: 122 AKGEITIMEEDDTHFGVRVIEILNA 146 GE+ V++ + + Sbjct: 307 FLGEV---GTLGVKKAVKITQFITE 328 >gi|212702681|ref|ZP_03310809.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098] gi|212673953|gb|EEB34436.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098] Length = 398 Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 10/92 (10%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S+ +++S + S +L + +G +++ L L G + L Sbjct: 294 SDGAAAESATVEPASVGALEL------PVVFEIGRLHLRLDELAALVPGHTLALGGETPS 347 Query: 111 S-VDITINNQKIAKGEITIMEEDDTHFGVRVI 141 VDI + Q +A+G + + GV++ Sbjct: 348 PVVDIRVAGQLLAQGRLVDVGGIP---GVQIT 376 >gi|331669597|ref|ZP_08370443.1| typeIII secretion apparatus protein [Escherichia coli TA271] gi|331063265|gb|EGI35178.1| typeIII secretion apparatus protein [Escherichia coli TA271] Length = 113 Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + +PVK++ +LG M + + +L +I+L ++++I Sbjct: 21 NESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPESEKNIEIR 80 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 81 VNGALTGYGELVEVDD---KLGVEI 102 >gi|271500422|ref|YP_003333447.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya dadantii Ech586] gi|270343977|gb|ACZ76742.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya dadantii Ech586] Length = 394 Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 11/124 (8%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVK 78 + + +P N +S + + +E + L Sbjct: 266 PIPVGDPTPFDNTASYGDTTLDACNVQHTSPCAESTLPSGEPLSGYPLPPLAL------A 319 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFG 137 + + G + + +L L+ G V+TL + + GE+ + Q +A+GE+ +E G Sbjct: 320 LTVRCGYLTLTLQDLQQLAPGTVLTLQQAIPGEAT-LYHGEQPLAQGELVNVE---GRLG 375 Query: 138 VRVI 141 +++ Sbjct: 376 LQIT 379 >gi|254301370|ref|ZP_04968814.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] gi|157811448|gb|EDO88618.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] Length = 432 Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 310 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 360 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 361 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 417 Query: 136 FGVRV 140 GVR+ Sbjct: 418 LGVRI 422 >gi|53722641|ref|YP_111626.1| type III secretion protein [Burkholderia pseudomallei K96243] gi|76818024|ref|YP_335836.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 1710b] gi|254264905|ref|ZP_04955770.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] gi|52213055|emb|CAH39093.1| putative type III secretion protein [Burkholderia pseudomallei K96243] gi|76582497|gb|ABA51971.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 1710b] gi|254215907|gb|EET05292.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] Length = 428 Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 306 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 356 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 357 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 413 Query: 136 FGVRV 140 GVR+ Sbjct: 414 LGVRI 418 >gi|317013858|gb|ADU81294.1| flagellar motor switch protein FliM [Helicobacter pylori Gambia94/24] Length = 354 Score = 42.2 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|251789494|ref|YP_003004215.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae Ech1591] gi|247538115|gb|ACT06736.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae Ech1591] Length = 387 Score = 42.2 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 26 LQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN------IPVKM 79 L++ V++P +++ + D + +S DN ++ + + + Sbjct: 254 LEECPVTTPFDDTAVFDNTASFDAYTASEASPYAEYGAPDGDNPAGALSGYALPPLTLAL 313 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRV-GESVDITINNQKIAKGEITIMEEDDTHFGV 138 + G + + +L L+ G V+TL + GE+ + Q +A GE+ + + G+ Sbjct: 314 TVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEAT-LYHGEQPLALGELV---DVEGRLGL 369 Query: 139 RVI 141 ++ Sbjct: 370 QIT 372 >gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] Length = 329 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Query: 50 ISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + + SD + ++ + + + ++ V + + + S + + +++ GDVI ++ Sbjct: 227 LDAGVQSDVDEKDDRWGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEMP- 285 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E V + NN +G++ + + V++ E + AQ Sbjct: 286 -EYVTVRANNVPTFRGKL---GSSNGKYSVQMKESIKAQ 320 >gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132] gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans ND132] Length = 325 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + +M PV+M + LG + L+ L +GD+I LD E ++ + Sbjct: 250 ERLMETPVEMVVRLGRTSISGRQLLYLQEGDIILLDTDEDELLEAEVEG 298 >gi|317180688|dbj|BAJ58474.1| flagellar motor switch protein FliM [Helicobacter pylori F32] Length = 354 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|317177228|dbj|BAJ55017.1| flagellar motor switch protein FliM [Helicobacter pylori F16] Length = 354 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|39995529|ref|NP_951480.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA] gi|39982292|gb|AAR33753.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA] gi|298504529|gb|ADI83252.1| flagellar motor switch protein FliM [Geobacter sulfurreducens KN400] Length = 328 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 24/47 (51%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 ++ P+ + + +G + +++L++L GD I LD + + + Sbjct: 253 LLEAPLDVSVEVGGAVISLNDLLSLVPGDTIMLDTPCTSDLTVKVGG 299 >gi|308182586|ref|YP_003926713.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4] gi|308064771|gb|ADO06663.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4] Length = 354 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|297379637|gb|ADI34524.1| flagellar motor switch protein FliM [Helicobacter pylori v225d] Length = 354 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|229544404|ref|ZP_04433462.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1] gi|229324889|gb|EEN90566.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1] Length = 333 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEIT 127 + I V + LG+ ++I + +NL GD I L++ + E + + ++ + I + Sbjct: 252 EGIKEAKVPLTAELGTATIKIEDFLNLEIGDCIRLNQTIEEPLVVKVDKIPKFIGQ---- 307 Query: 128 IMEEDDTHFGVRVIEIL 144 + T V++++I+ Sbjct: 308 -PGKQGTKMAVQILDII 323 >gi|254779108|ref|YP_003057213.1| flagellar motor switch protein FliM [Helicobacter pylori B38] gi|308184220|ref|YP_003928353.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180] gi|254001019|emb|CAX28963.1| Flagellar motor switch protein FliM [Helicobacter pylori B38] gi|308060140|gb|ADO02036.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180] Length = 354 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|207092363|ref|ZP_03240150.1| flagellar motor switch protein FliM [Helicobacter pylori HPKX_438_AG0C1] gi|317012255|gb|ADU82863.1| flagellar motor switch protein FliM [Helicobacter pylori Lithuania75] Length = 354 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|217031646|ref|ZP_03437151.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128] gi|298736644|ref|YP_003729170.1| flagellar motor switch protein FliM [Helicobacter pylori B8] gi|216946846|gb|EEC25442.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128] gi|298355834|emb|CBI66706.1| flagellar motor switch protein FliM [Helicobacter pylori B8] Length = 354 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|15645645|ref|NP_207821.1| flagellar motor switch protein FliM [Helicobacter pylori 26695] gi|108562841|ref|YP_627157.1| flagellar motor switch protein FliM [Helicobacter pylori HPAG1] gi|2314176|gb|AAD08075.1| flagellar motor switch protein (fliM) [Helicobacter pylori 26695] gi|107836614|gb|ABF84483.1| flagellar motor switch protein [Helicobacter pylori HPAG1] gi|317009061|gb|ADU79641.1| flagellar motor switch protein FliM [Helicobacter pylori India7] Length = 354 Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens GS-15] gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens GS-15] Length = 327 Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 ++ P+ + + +G + + L+NL+ GD I LD + + + Sbjct: 252 LLEAPLDLSVEVGGAIISMDELLNLTPGDTIMLDTPCNSDLVVKVGG 298 >gi|332673263|gb|AEE70080.1| flagellar motor switch protein FliM [Helicobacter pylori 83] Length = 354 Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|317010690|gb|ADU84437.1| flagellar motor switch protein FliM [Helicobacter pylori SouthAfrica7] Length = 354 Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|261837849|gb|ACX97615.1| flagellar motor switch protein [Helicobacter pylori 51] gi|261839264|gb|ACX99029.1| flagellar motor switch protein FliM [Helicobacter pylori 52] gi|317181758|dbj|BAJ59542.1| flagellar motor switch protein FliM [Helicobacter pylori F57] Length = 354 Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|194435192|ref|ZP_03067422.1| Spa33 [Shigella dysenteriae 1012] gi|194416571|gb|EDX32710.1| Spa33 [Shigella dysenteriae 1012] Length = 293 Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130 +I VK+ IL M I+ L + L K + V+I +N + GE+ +E Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279 Query: 131 EDDTHFGVRVIE 142 + +G+ + Sbjct: 280 DG---YGIEISS 288 >gi|15611461|ref|NP_223112.1| flagellar motor switch protein FliM [Helicobacter pylori J99] gi|4154924|gb|AAD05972.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] gi|307637112|gb|ADN79562.1| flagellar motor-switch protein [Helicobacter pylori 908] gi|325995703|gb|ADZ51108.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997299|gb|ADZ49507.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 354 Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKVANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|210134611|ref|YP_002301050.1| flagellar motor switch protein FliM [Helicobacter pylori P12] gi|210132579|gb|ACJ07570.1| flagellar motor switch protein [Helicobacter pylori P12] Length = 354 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|162460689|ref|NP_001105000.1| FDR3 [Zea mays] gi|14090543|gb|AAK53546.1| FDR3 [Zea mays] Length = 355 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 5/89 (5%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITIN 117 + ++ D + ++ + + I + + + I + L G ++ L + + + Sbjct: 266 RAAPDAASSPLD-VSDVELPVHIEVVTVNLPIGQIAALQPGYILALPVALADADIRLVAH 324 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 Q +A GE+ + + G+ + I NA Sbjct: 325 GQTLAFGELVAIGD---QLGLHIRRIANA 350 >gi|217033289|ref|ZP_03438720.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10] gi|216944230|gb|EEC23655.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10] gi|317179190|dbj|BAJ56978.1| flagellar motor switch protein FliM [Helicobacter pylori F30] Length = 354 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|188527225|ref|YP_001909912.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470] gi|188143465|gb|ACD47882.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470] gi|308061768|gb|ADO03656.1| flagellar motor switch protein FliM [Helicobacter pylori Cuz20] gi|308063277|gb|ADO05164.1| flagellar motor switch protein FliM [Helicobacter pylori Sat464] Length = 354 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 36/65 (55%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG+ + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|187734486|ref|YP_001883215.1| Spa33 [Shigella boydii CDC 3083-94] gi|187426982|gb|ACD06257.1| Spa33 [Shigella boydii CDC 3083-94] Length = 293 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130 +I VK+ IL M I+ L + L K + V+I +N + GE+ +E Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279 Query: 131 EDDTHFGVRVIE 142 + +G+ + Sbjct: 280 DG---YGIEISS 288 >gi|32307045|gb|AAP79015.1| Spa33 [Shigella flexneri] gi|320182864|gb|EFW57739.1| surface presentation of antigens protein SpaO [Shigella flexneri CDC 796-83] Length = 293 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130 +I VK+ IL M I+ L + L K + V+I +N + GE+ +E Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279 Query: 131 EDDTHFGVRVIE 142 + +G+ + Sbjct: 280 DG---YGIEISS 288 >gi|45504754|gb|AAS66845.1| YsaQ [Sodalis glossinidius] Length = 285 Score = 42.2 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 VDN+ P + ++ ++ +PV ++ +L + ++ L NL G V L + Sbjct: 204 VDNVIAPSNEETQPQHTLPLFDWS---RVPVTVEFVLEANSYPLAELDNLQPGTVFDLSE 260 Query: 107 RVGESVDITINNQKIAKG 124 V +++ I +N Q + G Sbjct: 261 NVEKNIKIFLNQQLVGHG 278 >gi|220929456|ref|YP_002506365.1| flagellar motor switch protein FliM [Clostridium cellulolyticum H10] gi|219999784|gb|ACL76385.1| flagellar motor switch protein FliM [Clostridium cellulolyticum H10] Length = 328 Score = 42.2 bits (98), Expect = 0.026, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 8/97 (8%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 ++ N +E + + + I + V ++ +LG + IS ++L GDV+ LD V + Sbjct: 235 FTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGDVLPLDTNVNGDL 294 Query: 113 DITINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +I + + + AK + +++ E+L + Sbjct: 295 EILVGDLPKFKAKPGV-----KKNKVAIKITEVLRRE 326 >gi|226313058|ref|YP_002772952.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC 100599] gi|226096006|dbj|BAH44448.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC 100599] Length = 331 Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 + + +G+ + + + + L KGDVI LD+ + + I + N G+ Sbjct: 258 KLPIVAEMGTATITVGDFLQLQKGDVIQLDQSIDNKLKIKVGNHLKFLGQ---PGTHKGR 314 Query: 136 FGVRVIEILNA 146 V++ E++ Sbjct: 315 VAVQIDEVIEE 325 >gi|82524596|ref|YP_406191.1| Spa33 [Shigella dysenteriae Sd197] gi|81243994|gb|ABB64703.1| Spa33 [Shigella dysenteriae Sd197] Length = 293 Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE---SVDITINNQKIAKGEITIME 130 +I VK+ IL M I+ L + L K + V+I +N + GE+ +E Sbjct: 223 DINVKVDFILLEKKMTINELKMYVEN---ELFKFPDDIVKHVNIKVNGSLVGHGELVSIE 279 Query: 131 EDDTHFGVRVIE 142 + +G+ + Sbjct: 280 DG---YGIEISS 288 >gi|283850275|ref|ZP_06367564.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B] gi|283574301|gb|EFC22272.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B] Length = 326 Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + +M PV++ + G + L++L GD+I LD V +D I + +G Sbjct: 250 ERLMETPVELLVRFGRSQITGRQLLSLKPGDIIMLDNDVDALLDAEIQGVRKFRG 304 >gi|324119903|gb|EGC13782.1| type III secretion protein SctQ [Escherichia coli E1167] Length = 134 Score = 41.8 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + +PVK++ +LG + + + +L +I+L ++++I Sbjct: 42 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 101 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 102 VNGALTGYGELVEVDD---KLGVEI 123 >gi|302338090|ref|YP_003803296.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM 11293] gi|301635275|gb|ADK80702.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM 11293] Length = 341 Score = 41.8 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 5/62 (8%) Query: 64 KSTDNFDLIMN----IPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINN 118 +T+N +++ + + + + +G + + ++++L GDVI L D RVG+ + I I N Sbjct: 242 ATTENLNILKDRLSTVAIPVVAEIGEMNLTVRDVLSLRAGDVIRLPDVRVGDPMTIKIGN 301 Query: 119 QK 120 +K Sbjct: 302 RK 303 >gi|323180306|gb|EFZ65858.1| surface presentation of antigens family protein [Escherichia coli 1180] Length = 134 Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + +PVK++ +LG + + + +L +I+L ++++I Sbjct: 42 NESKIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 101 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 102 VNGALTGYGELVEVDD---KLGVEI 123 >gi|224373367|ref|YP_002607739.1| flagellar motor switch protein FliM [Nautilia profundicola AmH] gi|223588573|gb|ACM92309.1| flagellar motor switch protein FliM [Nautilia profundicola AmH] Length = 356 Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 47/99 (47%), Gaps = 17/99 (17%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++++ ++ + L+ ++++ +LG + + +++L GD+I L++ ++V + Sbjct: 240 NETSGRKSRNKELRALLRGAKIELEAVLGYAELNMKQVLDLEVGDIIKLNRPADDTVIVK 299 Query: 116 INNQKIAKGEITIMEEDDTHFGVR-------VIEILNAQ 147 ++ + E+ FGVR + EIL + Sbjct: 300 VDGR----------EKFIAEFGVRRYRRSIKIKEILKTE 328 >gi|320202507|gb|EFW77077.1| surface presentation of antigens protein SpaO [Escherichia coli EC4100B] Length = 173 Score = 41.8 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E +PVK++ +LG + + + +L +I+L ++++I Sbjct: 81 NESEIYDENDEQMIHSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 140 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162 >gi|331664427|ref|ZP_08365333.1| typeIII secretion apparatus protein [Escherichia coli TA143] gi|331058358|gb|EGI30339.1| typeIII secretion apparatus protein [Escherichia coli TA143] Length = 113 Score = 41.8 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 E + ++PVK++ +L M + + +L +I+L ++++I +N Sbjct: 28 ENDYQQINSFEDLPVKIEFVLEKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTG 87 Query: 123 KGEITIMEEDDTHFGVRV 140 GE+ +++ GV + Sbjct: 88 YGELVEVDD---KLGVEI 102 >gi|315180490|gb|ADT87404.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 108 Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + +IP + ++L + I+++ ++ GD I L K + +D+ + NQ + KG++ + Sbjct: 43 LNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY--DLLDVNVENQTLFKGQLIV--G 98 Query: 132 DDTHFGVR 139 ++ GV+ Sbjct: 99 ENAQLGVK 106 >gi|170737014|ref|YP_001778274.1| surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia MC0-3] gi|169819202|gb|ACA93784.1| surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia MC0-3] Length = 290 Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 IPV + + + S M++ L+ + GDV+ + + E+VD+ +NN Sbjct: 225 IPVTISVHVLSKNMRLDELLRMRPGDVLPV-RLP-ETVDVLVNN 266 >gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1 BON] gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1 BON] Length = 335 Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I N+ + ++ ILG + I + + LS GD+I LD+ V + + + + G+ Sbjct: 258 IENVQIPIRAILGESTISIGDFMQLSPGDIIQLDESVDNHIKVMVGDITKFYGK---PGL 314 Query: 132 DDTHFGVRVIEILNAQ 147 H V++ +++ + Sbjct: 315 RHNHMAVKITDVIYQE 330 >gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] Length = 327 Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P E ++ K +I + + +E ++ V ++ LG+ M++ + Sbjct: 222 PVIVLEPVLNKIGTHDILARSKKATEDRIEDIARTLKEVL---VYLEFRLGTAAMKVEDF 278 Query: 94 VNLSKGDVITLDKRVGESVDITINN 118 ++L +GD++TLDK+V + + + IN Sbjct: 279 LSLKEGDLLTLDKKVDDELPVFING 303 >gi|134300220|ref|YP_001113716.1| flagellar motor switch protein FliM [Desulfotomaculum reducens MI-1] gi|134052920|gb|ABO50891.1| flagellar motor switch protein FliM [Desulfotomaculum reducens MI-1] Length = 330 Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V + +++G + + + + L GDV+ L + + + +D+ ++ + K + Sbjct: 259 VAISVVMGEAQITVKDFLQLQVGDVLPLGRGLTQDLDMYVDEELKYK---VQVGTVGQSL 315 Query: 137 GVRVIEI 143 V+V + Sbjct: 316 AVQVTSL 322 >gi|312958827|ref|ZP_07773346.1| type III secretion system rscQ [Pseudomonas fluorescens WH6] gi|311286597|gb|EFQ65159.1| type III secretion system rscQ [Pseudomonas fluorescens WH6] Length = 335 Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 + + + G+ + + L NL G V+ + + ++ I +G++ E D Sbjct: 268 MALTVRCGTLNLTLGELRNLGPGSVLGITGYAPGVAGLYYGDRPIGQGQLV---EVDGRL 324 Query: 137 GVRVIEIL 144 G++V +L Sbjct: 325 GLQVSRVL 332 >gi|297584047|ref|YP_003699827.1| flagellar motor switch protein FliM [Bacillus selenitireducens MLS10] gi|297142504|gb|ADH99261.1| flagellar motor switch protein FliM [Bacillus selenitireducens MLS10] Length = 333 Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + + + +L I P+ + + LG + I V+L+ GD I L++ + E + Sbjct: 235 MQTKKKERKPGEIEALELNIKRAPLDVAVQLGQSEITIEEFVHLAVGDTIELNQSIDELL 294 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +T+ K + H V+++E + + Sbjct: 295 RMTVGGSPKYK---VQPGKVKEHLAVQIVEDIEEE 326 >gi|303892|dbj|BAA02828.1| spa33 [Shigella flexneri] gi|829079|dbj|BAA09161.1| ORF21 [Shigella sonnei] gi|281603907|gb|ADA76890.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella flexneri 2002017] Length = 293 Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 56 SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE--- 110 S+SN E + + L +I VK+ IL M I+ L + L K + Sbjct: 203 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVEN---ELFKFPDDIVK 259 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+I +N + GE+ +E+ +G+ + Sbjct: 260 HVNIKVNGSLVGHGELVSIEDG---YGIEISS 288 >gi|167907267|ref|ZP_02494472.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei NCTC 13177] Length = 217 Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 95 PADRASDLPAPSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 145 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 146 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 202 Query: 136 FGVRV 140 GVR+ Sbjct: 203 LGVRI 207 >gi|13449099|ref|NP_085315.1| Type III secretion protein [Shigella flexneri 5a] gi|74314951|ref|YP_313369.1| Spa33 [Shigella sonnei Ss046] gi|60415911|sp|P0A1K9|SPAO_SHIFL RecName: Full=Surface presentation of antigens protein SpaO; AltName: Full=Spa33 protein gi|60415912|sp|P0A1L0|SPAO_SHISO RecName: Full=Surface presentation of antigens protein SpaO; AltName: Full=Spa33 protein gi|13310647|gb|AAK18471.1|AF348706_160 Type III secretion protein [Shigella flexneri 5a] gi|152794|gb|AAA26543.1| spa33 [Shigella flexneri] gi|12329096|emb|CAC05827.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella flexneri] gi|73858428|gb|AAZ91134.1| Spa33 [Shigella sonnei Ss046] Length = 293 Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 56 SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE--- 110 S+SN E + + L +I VK+ IL M I+ L + L K + Sbjct: 203 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVEN---ELFKFPDDIVK 259 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+I +N + GE+ +E+ +G+ + Sbjct: 260 HVNIKVNGSLVGHGELVSIEDG---YGIEISS 288 >gi|326204614|ref|ZP_08194470.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM 2782] gi|325985181|gb|EGD46021.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM 2782] Length = 328 Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 8/97 (8%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 ++ N +E + + + I + V ++ +LG + IS ++L GDV+ LD V + Sbjct: 235 FTNVENEKIEHNKSDIEFKIEHTYVPVRAVLGKTSISISEFLDLQSGDVLPLDTNVNGDL 294 Query: 113 DITINN--QKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +I + + + AK + V++ E+L + Sbjct: 295 EILVGDLPKFNAKPGV-----KKNKVAVKITEVLRRE 326 >gi|238757864|ref|ZP_04619046.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC 35236] gi|238703849|gb|EEP96384.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC 35236] Length = 269 Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 10/96 (10%) Query: 53 PISSDSNNILEKSTDNFD-------LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + D ++L + D+ D I ++P + + +G + + L L GD++ + Sbjct: 158 ELVQDVESLLMEERDDVDNPPPLAVSIDDLPQILLVEVGQVDISLGALRALRVGDLLPVA 217 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + G V + +N + + GE+ F VR+ Sbjct: 218 AQFGGEVKLRLNGRVLGAGELV---GCGDSFLVRIN 250 >gi|115360603|ref|YP_777740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] gi|115285931|gb|ABI91406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] Length = 326 Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 7/97 (7%) Query: 51 SEPISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DK 106 +P S TD+ D I + + +++ + + M ++ L L G V+ L Sbjct: 226 EDPTMSHDTQFNAPLTDSIDTPVEISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 285 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V + Q I GE+ + + H GVR++++ Sbjct: 286 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 319 >gi|91791431|ref|YP_561082.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] gi|91713433|gb|ABE53359.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] Length = 103 Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 64 KSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 ++ + ++ +++ + +G M IS L L + ++ L ++V ++ + IAK Sbjct: 22 ETPLDLAILEQTKIELNVNIGDVSMSISELKELKENSIVKLAQKVDSEFELKWKDVVIAK 81 Query: 124 GEITIMEEDDTHFGVRVIEILNAQ 147 G + ++E + + + ++ + + Sbjct: 82 GRLVAVDE---YLALEITQVTSNE 102 >gi|315586408|gb|ADU40789.1| flagellar motor switch protein FliM [Helicobacter pylori 35A] Length = 354 Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 35/65 (53%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++N+ ++ + L+ + V M + LG + + +++L GD I L+K + V + Sbjct: 238 SETNSKKSRNKELQALLSGVSVDMMVFLGVVELSLKEMLDLDVGDTIRLNKIANDEVSVY 297 Query: 116 INNQK 120 ++ +K Sbjct: 298 VHKKK 302 >gi|167820507|ref|ZP_02452187.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 91] Length = 199 Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 77 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 127 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 128 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 184 Query: 136 FGVRV 140 GVR+ Sbjct: 185 LGVRI 189 >gi|323388135|gb|ADX60331.1| type III secretion protein RscQab [Pseudomonas fluorescens] Length = 330 Score = 41.0 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 29 TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF--DLIMNIPVKMQIILGSC 86 + S P + + I++ VD + + E D F + + + + + G+ Sbjct: 213 DDESGPLCLTLVSIEETSVDEDFATSQYPGDELDEPVVDVFGHEPFDELNMALTVRCGTL 272 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + + L NL+ G V+ + + ++ I +G++ E D G+++ ++ + Sbjct: 273 NLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLV---EVDGRLGLQLSRVIFS 329 Query: 147 Q 147 + Sbjct: 330 R 330 >gi|167584012|ref|ZP_02376400.1| type III secretion inner membrane protein SctQ [Burkholderia ubonensis Bu] Length = 144 Score = 41.0 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130 + ++ + + + + + + I+ L L G V+ L + V + Q I G + + Sbjct: 68 LGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG 127 Query: 131 EDDTHFGVRV 140 H GVR+ Sbjct: 128 ---AHLGVRI 134 >gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198] gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198] Length = 357 Score = 41.0 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 34/64 (53%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S++++ ++ + LI + + LG + + ++ L +GD+I LD+ ++V + Sbjct: 238 SETSSKKSRNKELQALIGGAGISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVA 297 Query: 116 INNQ 119 I+ + Sbjct: 298 IDGK 301 >gi|331005464|ref|ZP_08328843.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989] gi|330420740|gb|EGG95027.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989] Length = 255 Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT-INNQKIAKGEITIMEEDDT 134 + + G+ + + ++++ GDVI L K++G+SV ++ +K+ G + + +D Sbjct: 190 KISFSVEYGNASLTVDEIMSIKTGDVIRLTKKIGDSVSAHNLSGEKLFDGSLGV---NDN 246 Query: 135 HFGVRVI 141 +F ++V Sbjct: 247 NFAIKVT 253 >gi|307310519|ref|ZP_07590167.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|306909414|gb|EFN39909.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] Length = 113 Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + +PVK++ +LG + + + +L +I+L ++++I Sbjct: 21 NESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIR 80 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 81 VNGALTGYGELVEVDD---KLGVEI 102 >gi|227876753|ref|ZP_03994862.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35243] gi|269976280|ref|ZP_06183276.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris 28-1] gi|306817700|ref|ZP_07451442.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35239] gi|307699817|ref|ZP_07636868.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16] gi|227842650|gb|EEJ52850.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35243] gi|269935609|gb|EEZ92147.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris 28-1] gi|304649514|gb|EFM46797.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35239] gi|307614855|gb|EFN94073.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16] Length = 307 Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 5/108 (4%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDV--DNISEPISSDSNNILEKSTDNFDLIMN 74 ++ + D ++ P I K D D SE ++ + ++ DN + Sbjct: 179 PITLTTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLE---E 235 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 IPV++ + + L L+ GD + L +D+ +++ +A Sbjct: 236 IPVEVAVRFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILA 283 >gi|86157791|ref|YP_464576.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-C] gi|85774302|gb|ABC81139.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-C] Length = 334 Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 39 EMLIQKNDVDNISEPISSD---SNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLV 94 ++I V++ + +SS S E+ D + +PV+++ + G + + L+ Sbjct: 216 HLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLL 275 Query: 95 NLSKGDVITLDKRVGESVDITINNQ 119 L++G+V+ LD G V + + + Sbjct: 276 ELAEGEVLLLDTDEGRPVPVVVQGR 300 >gi|15606467|ref|NP_213847.1| hypothetical protein aq_1238 [Aquifex aeolicus VF5] gi|2983683|gb|AAC07248.1| putative protein [Aquifex aeolicus VF5] Length = 182 Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + I E +S + E+ + ++ +PV ++++L +++ +VN+ KG VI K Sbjct: 89 LKEIKEELSMRKPDPKERE-ELLSALLKVPVNLEVLLFKRKDKLNKVVNMGKGFVILTGK 147 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 E V++ + + G I+ E + V++ +IL Sbjct: 148 TPQEEVEVLVQGRLKFLG---ILGEKNGKRAVKISKIL 182 >gi|167573309|ref|ZP_02366183.1| type III secretion system protein BsaV [Burkholderia oklahomensis C6786] Length = 320 Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 5/93 (5%) Query: 41 LIQKNDVDNISEP-ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + ++ +D++ + ++++ T + D + PV ++ +L + ++ L + G Sbjct: 213 PLSEDAIDDLHDERAAAEAPQDAPPPTFDIDAL---PVTLEFVLQDERVTVAQLASCHPG 269 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEED 132 V+ + GE V I N + GE+ + E Sbjct: 270 LVLPVRGAPGE-VTIRANGRPFGCGELIQVGEQ 301 >gi|46562140|ref|YP_009161.1| type III secretion system protein YopQ family [Desulfovibrio vulgaris str. Hildenborough] gi|46447677|gb|AAS94343.1| type III secretion system protein, YopQ family [Desulfovibrio vulgaris str. Hildenborough] gi|311235511|gb|ADP88364.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris RCH1] Length = 484 Score = 41.0 bits (95), Expect = 0.056, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 P S S+ + D + V + L M++++L L+ G L Sbjct: 335 TPESPMSDQQTPEVPAGLDTAA-LEVDIVFELERRTMKLNDLAALAPGYTFALGTDPLAP 393 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 V + + + I +G + + D GV+V+ + +A Sbjct: 394 VTLRVQGRNIGRGRLV---DLDGTPGVQVLHLESA 425 >gi|197122895|ref|YP_002134846.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K] gi|220917687|ref|YP_002492991.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-1] gi|196172744|gb|ACG73717.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K] gi|219955541|gb|ACL65925.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-1] Length = 338 Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 39 EMLIQKNDVDNISEPISSD---SNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLV 94 ++I V++ + +SS S E+ D + +PV+++ + G + + L+ Sbjct: 220 HLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLL 279 Query: 95 NLSKGDVITLDKRVGESVDITINNQ 119 L++G+V+ LD G V + + + Sbjct: 280 ELAEGEVLLLDTDEGRPVPVVVQGR 304 >gi|31983540|ref|NP_858285.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|18462532|gb|AAL72304.1| Spa33, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] Length = 248 Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 56 SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE--- 110 S+SN E + + L +I VK+ IL M I+ L + L K + Sbjct: 158 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVEN---ELFKFPDDIVK 214 Query: 111 SVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 V+I +N + GE+ +E+ +G+ + Sbjct: 215 HVNIKVNGSLVGHGELVSIEDG---YGIEISS 243 >gi|254253711|ref|ZP_04947028.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia dolosa AUO158] gi|124898356|gb|EAY70199.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia dolosa AUO158] Length = 388 Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 7/97 (7%) Query: 51 SEPISSDSNNILEKSTDNFDL---IMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DK 106 +P S TD+ D I + + +++ + + M ++ L L G V+ L Sbjct: 288 EDPTMSHDTQFNAPLTDSIDTPVEISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTA 347 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 V + Q I GE+ + + H GVR++++ Sbjct: 348 LPDARVRLVTYGQTIGFGELVSVGD---HLGVRLVQL 381 >gi|163783035|ref|ZP_02178030.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1] gi|159881715|gb|EDP75224.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1] Length = 322 Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 40 MLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKG 99 + I +D I + + + + +M PV ++ IL + M + L+ + +G Sbjct: 213 LAIPMKTIDPIKDILRTADTESGDFRDVILSNLMGTPVLLEAILPTLVMNVHELLEMKEG 272 Query: 100 DVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 D I LD R +S+ + + + KG I+ E V++ + Sbjct: 273 DFIPLDPRATDSITVKVAGVPMFKG---ILGESAGRKAVKIKSFV 314 >gi|221639474|ref|YP_002525736.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|221160255|gb|ACM01235.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] Length = 323 Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 18/116 (15%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 N E S I PLQ S S M D D + EK I Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125 ++IP+ + L + + L+ + GDV+ + + E+V + + Q I A GE Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEAVSLLVEGQPIFEAAPGE 307 >gi|167915629|ref|ZP_02502720.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 112] Length = 238 Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 116 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 166 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 167 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 223 Query: 136 FGVRV 140 GVR+ Sbjct: 224 LGVRI 228 >gi|167923472|ref|ZP_02510563.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei BCC215] Length = 209 Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 87 PADRAGDLPADSAAHSSPGSLAGL--------PAGLPADAPPRDARYAAPEPAD-LGEVA 137 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 138 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 194 Query: 136 FGVRV 140 GVR+ Sbjct: 195 LGVRI 199 >gi|94987608|ref|YP_595541.1| putative translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] gi|94731857|emb|CAJ55220.1| putative translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] Length = 368 Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 6/119 (5%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI-MNIPVKMQIILGS 85 + + E + + ++S + + D+ +++PV ++ Sbjct: 254 PEDQGNGGEQFVENHTEAPNSHGQQRTARANSGRQSGQQSSGIDVSGLDLPVVFELE--R 311 Query: 86 CCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 M + N+ L+ G L V V + +N + I G + + + GV+V++++ Sbjct: 312 QFMTVQNIGLLAPGYTFALSVDVQAPVTLRVNGKAIGVGRLV---DLNGSLGVQVVQVM 367 >gi|77463631|ref|YP_353135.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] gi|126462463|ref|YP_001043577.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] gi|77388049|gb|ABA79234.1| Flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] gi|126104127|gb|ABN76805.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] Length = 323 Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 18/116 (15%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 N E S I PLQ S S M D D + EK I Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125 ++IP+ + L + + L+ + GDV+ + + E+V + + Q I A GE Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEAVSLLVEGQPIFEAAPGE 307 >gi|296531735|ref|ZP_06894561.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] gi|296267934|gb|EFH13735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] Length = 353 Score = 41.0 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 V++ ++ S + S + + G V LDKR + VD+ + + Sbjct: 274 VELTAVIESRTVPFSEVASWQPGSVFVLDKRQEDPVDVFCQGLMVCRA 321 >gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7] gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7] Length = 333 Score = 40.6 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 27/45 (60%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + PV M+++LG M + N + L GD+I LD + + + +++ Sbjct: 258 LHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSV 302 >gi|323490151|ref|ZP_08095371.1| flagellar motor switch protein FliM [Planococcus donghaensis MPA1U2] gi|323396199|gb|EGA89025.1| flagellar motor switch protein FliM [Planococcus donghaensis MPA1U2] Length = 327 Score = 40.6 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 + + ++++ +LG ++ + +NL KGDVI LD+ V + ++N+ + + Sbjct: 247 EKLHGTKMEIKAVLGQSMIEFGDFLNLKKGDVIRLDESYDSPVTLQVDNKLKFYAQPGV- 305 Query: 130 EEDDTHFGVRVIEI 143 ++V E+ Sbjct: 306 --SKGRMAIQVTEV 317 >gi|298530627|ref|ZP_07018029.1| flagellar motor switch protein FliM [Desulfonatronospira thiodismutans ASO3-1] gi|298510001|gb|EFI33905.1| flagellar motor switch protein FliM [Desulfonatronospira thiodismutans ASO3-1] Length = 325 Score = 40.6 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + ++ IPV + +G + L+N+ GD++ LD + + + Sbjct: 250 ERLLEIPVDFNVTMGKTQITGRQLLNMEAGDILMLDTDQEDLLKAYVQGVL 300 >gi|120586839|ref|YP_961184.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564253|gb|ABM29996.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris DP4] Length = 475 Score = 40.6 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES 111 P S S+ + D + V + L M++++L L+ G L Sbjct: 326 TPESPMSDQQTPEVPAGLDTAA-LEVDIVFELERRTMKLNDLAALAPGYTFALGTDPLAP 384 Query: 112 VDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 V + + + I +G + + D GV+V+ + +A Sbjct: 385 VTLRVQGRNIGRGRLV---DLDGTPGVQVLHLESA 416 >gi|302185359|ref|ZP_07262032.1| type III secretion system apparatus protein YscQ/HrcQ [Pseudomonas syringae pv. syringae 642] gi|256259401|gb|ACU65038.1| HrcQ [Pseudomonas syringae pv. syringae] Length = 393 Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 44/117 (37%), Gaps = 6/117 (5%) Query: 27 QDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSC 86 ++ + ++ D S + E T F+ ++ + + + G Sbjct: 279 EEDAGLDDDRYEDDAVEDEDGHEHHADPHPSSGPVSETPTGAFN---DLALPLTLRCGQI 335 Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 + + L L G V+ + + +++A+GE+ + + G++++++ Sbjct: 336 NLTLGELATLVPGTVLEVPGIKPGLAGLYYGERRLAQGELV---DVEGRLGLQILQV 389 >gi|15895484|ref|NP_348833.1| flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824] gi|15025214|gb|AAK80173.1|AE007722_2 Flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824] gi|325509631|gb|ADZ21267.1| Flagellar switch protein FliM [Clostridium acetobutylicum EA 2018] Length = 331 Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 55 SSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 + I+++S +++ V + LG + + + + LS GDVITL+ + + V Sbjct: 236 QENDEEIVKESRVELRKRLDVVEVPVIAKLGQTEITVEDFLRLSIGDVITLNSKCSDPVP 295 Query: 114 ITI 116 + I Sbjct: 296 VYI 298 >gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas mendocina NK-01] gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas mendocina NK-01] Length = 279 Score = 40.6 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 4/79 (5%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 ++ ++ + I +PV++ ++ S M +S ++ L GD++ + + + E D+ IN Sbjct: 195 PPAPAAQAGNSLNQIRQLPVRLDCVVASLQMPLSQVLALRPGDILPM-RLL-ERCDVQIN 252 Query: 118 NQKIAKGEITIMEEDDTHF 136 QK+ +G I E+D + F Sbjct: 253 QQKLFRG--AIFEDDGSLF 269 >gi|167724362|ref|ZP_02407598.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei DM98] Length = 216 Score = 40.6 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + + + + P D+ + D + + Sbjct: 94 PADRAGDLPADSAAHSSPGSLAGL---QAGLQADASPR--DARYAAPEPAD----LGEVA 144 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 145 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 201 Query: 136 FGVRV 140 GVR+ Sbjct: 202 LGVRI 206 >gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4] gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4] Length = 331 Score = 40.6 bits (94), Expect = 0.073, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 27/45 (60%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + PV M+++LG M + N + L GD+I LD + + + +++ Sbjct: 257 LHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLILSV 301 >gi|2315249|emb|CAA74715.1| flagellar switch protein [Rhodobacter sphaeroides] Length = 323 Score = 40.6 bits (94), Expect = 0.073, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 18/116 (15%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 N E S I PLQ S S M D D + EK I Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125 ++IP+ + L + + L+ + GDV+ + + E++ + + Q I A GE Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEALSLLVEGQPIFEAAPGE 307 >gi|332298232|ref|YP_004440154.1| flagellar motor switch protein FliM [Treponema brennaborense DSM 12168] gi|332181335|gb|AEE17023.1| flagellar motor switch protein FliM [Treponema brennaborense DSM 12168] Length = 344 Score = 40.6 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120 + + ++ + + +GS + I +++ L GD++ L + R+ + + ++I N+K Sbjct: 252 EKLSDVDMDVVAEIGSVSLPIRDVLALRVGDIVRLSNVRITDPITLSIGNKK 303 >gi|126653737|ref|ZP_01725655.1| flagellar motor switch protein M [Bacillus sp. B14905] gi|126589701|gb|EAZ83837.1| flagellar motor switch protein M [Bacillus sp. B14905] Length = 331 Score = 40.6 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 23/41 (56%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + + LG + I + + + GDVI L++++ + + + + Sbjct: 259 KLPLSVELGLTDITIEDFLTMQVGDVIQLEQKINDPLLLKV 299 >gi|262276388|ref|ZP_06054197.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] gi|262220196|gb|EEY71512.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] Length = 353 Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 55/123 (44%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D S D +M++ V + Sbjct: 205 IELDGGGGDFHVVMPYSMVEPIRELLDAGIQSDKMDTDKRW----SKALQDEVMDVEVSL 260 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 L + + +L+ + GDVI + ++ ++ + I + +G++ + + + ++ Sbjct: 261 TAKLLETTLSLRDLMEMEAGDVIPV--KMPDACTVYIEDLPTFRGKL---GQSNDNLAIK 315 Query: 140 VIE 142 + + Sbjct: 316 ITD 318 >gi|167850342|ref|ZP_02475850.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei B7210] Length = 227 Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 13/119 (10%) Query: 23 DNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII 82 D P SSP + + + P + + + + D + + + + + Sbjct: 111 DLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVALPVHVE 161 Query: 83 LGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + + + I+ L L G V+ L + V + Q I G + + H GVR+ Sbjct: 162 IDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLGVRI 217 >gi|117928062|ref|YP_872613.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus 11B] gi|117648525|gb|ABK52627.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus 11B] Length = 314 Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 47 VDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 ++ + P D ++LE+S + ++ +++ + + L+NLS GDV++L Sbjct: 212 LEAAASPKRGDRRDLLERSQAALRARLEDVEIEVAVQFPYVALTPHELLNLSVGDVLSLR 271 Query: 106 KRVGESVDITINNQKIAKG 124 + IT A Sbjct: 272 HPTNAPLLITAEGIPFAYA 290 >gi|118592625|ref|ZP_01550015.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614] gi|118434676|gb|EAV41327.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614] Length = 360 Score = 40.6 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGES---VDITINNQKIAKGEITIMEEDDTH 135 + LGS + + + N G + L + ES V + N+ IA+G++ + + Sbjct: 292 LSFRLGSANLSATEIANWRPGAIANLPDSLNESNTEVKVVANDTTIAQGDLVRVGD---R 348 Query: 136 FGVRVIEI 143 GVR+ I Sbjct: 349 VGVRLSRI 356 >gi|303248092|ref|ZP_07334357.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans JJ] gi|302490491|gb|EFL50399.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans JJ] Length = 326 Score = 40.6 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + +M PV+M + G + L++L GD+I LD V ++ + + +G Sbjct: 250 ERLMETPVEMLVRFGRSQVTGRQLLSLKPGDIIMLDNDVDALLEAEVQGVRKFRG 304 >gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus C3-41] gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41] Length = 331 Score = 40.2 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 23/41 (56%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + + LG + I + + + GDVI L++++ + + + + Sbjct: 259 KLPLSVELGLTDITIEDFLTMQIGDVIQLEQKINDPLLLKV 299 >gi|170026116|ref|YP_001722621.1| type III secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169752650|gb|ACA70168.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia pseudotuberculosis YPIII] Length = 320 Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P + + +G + + + L+ G + V+I +N Q + +G + +E Sbjct: 244 DLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDE-- 301 Query: 134 THFGVRVIE 142 VR+ + Sbjct: 302 -QLVVRIAQ 309 >gi|153950005|ref|YP_001402769.1| type III secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|152961500|gb|ABS48961.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pseudotuberculosis IP 31758] Length = 320 Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 ++P + + +G + + + L+ G + V+I +N Q + +G + +E Sbjct: 244 DLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDE-- 301 Query: 134 THFGVRVIE 142 VR+ + Sbjct: 302 -QLVVRIAQ 309 >gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] Length = 322 Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 23/52 (44%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + + + + L M + L+NL G I L+ + +S+++ + + Sbjct: 240 LKKLSKVELNFTLELSRFTMLVEELLNLEVGSDIILNVKKDDSINLMVEGKP 291 >gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] Length = 353 Score = 40.2 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 36/64 (56%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 SD+++ ++ + LI V + LG+ + + +++L GD++ LD+ +++ ++ Sbjct: 238 SDTSSKKSRNKELQALIAGANVVVSGYLGNATLSLKEVLDLQVGDIVRLDRAADDTILVS 297 Query: 116 INNQ 119 ++ + Sbjct: 298 VDGR 301 >gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] Length = 365 Score = 40.2 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 L+ V ++ LG + + ++++L GDV+ L + V ++I+ ++ +G+ + Sbjct: 254 LLGGAKVNVEANLGDAELTMRDVLDLQIGDVVRLSSAANDIVTVSIDGKERFRGQ---IG 310 Query: 131 EDDTHFGVRVIEILNAQ 147 +++ EI++ + Sbjct: 311 LRRFRKSIQISEIIDTE 327 >gi|257457606|ref|ZP_05622773.1| flagellar motor switch protein FliM [Treponema vincentii ATCC 35580] gi|257444992|gb|EEV20068.1| flagellar motor switch protein FliM [Treponema vincentii ATCC 35580] Length = 344 Score = 40.2 bits (93), Expect = 0.092, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120 + + + + + +GS + + +++NL GDV+ L D RVG +++ ++K Sbjct: 252 EKLSTVDMDVVAEVGSLKLPVRDVLNLRAGDVVRLTDTRVGHPFTLSVGSRK 303 >gi|332558487|ref|ZP_08412809.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] gi|3435105|gb|AAC32319.1| flagellar switch protein [Rhodobacter sphaeroides] gi|332276199|gb|EGJ21514.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] Length = 323 Score = 40.2 bits (93), Expect = 0.093, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 18/116 (15%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 N E S I PLQ S S M D D + EK I Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRSWREKLER---AI 253 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGE 125 ++IP+ + L + + L+ + GDV+ + + E++ + + Q I A GE Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQMQPGDVLPV--HLTEALSLLVEGQPIFEAAPGE 307 >gi|238927453|ref|ZP_04659213.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC 43531] gi|238884735|gb|EEQ48373.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC 43531] Length = 333 Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 7/96 (7%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 S D + E+ + I V + LG M I+ + L GDV+ LD + + Sbjct: 238 ASMDRESSPEQVEELQRKIERTSVPFTVQLGEIEMTINEFLTLGFGDVLQLDTLTKDELV 297 Query: 114 ITI--NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + N + +A+ V++ ++ + Sbjct: 298 CYVGSNPKFLAR-----PGTAGKRMAVQISGVIEGE 328 >gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] Length = 326 Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN--QKIAKGEITI 128 LI + ++ +LG+ + + + VNL GD+I LD V + ++I + N + A + Sbjct: 252 LISKAKIPVKAVLGNSTISVDDFVNLQVGDIIRLDSGVNQDLNIFVGNIKKFTA-----L 306 Query: 129 MEEDDTHFGVRVIEILNAQ 147 ++ VRV ++ + Sbjct: 307 PGAVGDNYAVRVTSVVREE 325 >gi|189025946|ref|YP_001933718.1| flagellar motor switch protein FliM [Treponema pallidum subsp. pallidum SS14] gi|189018521|gb|ACD71139.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] Length = 344 Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120 D + + + + +GS + + +++ L GD+I L D VG+ ++I N+K Sbjct: 252 DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRK 303 >gi|14422436|dbj|BAB60843.1| epaO2 [Escherichia coli] Length = 173 Score = 40.2 bits (93), Expect = 0.095, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 ++S E + +PVK++ +L M + + L +I+L ++++I Sbjct: 81 NESEIYDENDEQMINSFEELPVKIEFVLVKKIMNLYEIDELCAKRIISLLPESEKNIEIR 140 Query: 116 INNQKIAKGEITIMEEDDTHFGVRV 140 +N GE+ +++ GV + Sbjct: 141 VNGALTGYGELVEVDD---KLGVEI 162 >gi|15639708|ref|NP_219158.1| flagellar motor switch protein FliM [Treponema pallidum subsp. pallidum str. Nichols] gi|6225364|sp|P74927|FLIM_TREPA RecName: Full=Flagellar motor switch protein FliM gi|2196898|gb|AAB61256.1| flagellar switch protein [Treponema pallidum] gi|3323023|gb|AAC65687.1| flagellar motor switch protein (fliM) [Treponema pallidum subsp. pallidum str. Nichols] gi|291060085|gb|ADD72820.1| flagellar motor switch protein FliM [Treponema pallidum subsp. pallidum str. Chicago] Length = 344 Score = 40.2 bits (93), Expect = 0.095, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120 D + + + + +GS + + +++ L GD+I L D VG+ ++I N+K Sbjct: 252 DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRK 303 >gi|152997440|ref|YP_001342275.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1] gi|150838364|gb|ABR72340.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1] Length = 324 Score = 40.2 bits (93), Expect = 0.095, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 50 ISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + + SD + ++ + + + +I V++ + + + + + ++ GD+I ++ Sbjct: 228 LDAGVQSDVDEKDDRWGKSLEQDVKDIDVRLSVSVANRKISLGEVLKFKAGDIIPIEMP- 286 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E V + N KG++ + E + V++ E A+ Sbjct: 287 -EFVTVRANGVPTFKGKLGVSNE---RYSVQMQESFKAK 321 >gi|297530595|ref|YP_003671870.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3] gi|297253847|gb|ADI27293.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3] Length = 334 Score = 40.2 bits (93), Expect = 0.096, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 22/41 (53%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + LG+ + ++ + L GDVI L++ + E + + I Sbjct: 260 KLPIIAELGTAVITVNEFLQLEAGDVIQLEQSIHEPLVVKI 300 >gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] Length = 321 Score = 40.2 bits (93), Expect = 0.098, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 + +S ++ + I +PV++ ++ S M ++ ++ L GD++ + + + E D+ IN Sbjct: 237 PPAPVAQSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPM-RLL-ERCDVQIN 294 Query: 118 NQKIAKGEITIMEEDDTHF 136 QK+ +G I E+D + F Sbjct: 295 QQKLFRG--AIFEDDGSLF 311 >gi|119714993|ref|YP_921958.1| flagellar motor switch protein FliM [Nocardioides sp. JS614] gi|119535654|gb|ABL80271.1| flagellar motor switch protein FliM [Nocardioides sp. JS614] Length = 335 Score = 40.2 bits (93), Expect = 0.099, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 1/78 (1%) Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 P+S ++ D +PV++ + L + L L GD + L Sbjct: 237 AAAPAPVSERERAQRAQAAAELADQFQRVPVEVAVSLRPTTLSPMELAALRPGDALRLRH 296 Query: 107 RVGESVDITINNQKIAKG 124 +++ ++ A Sbjct: 297 PAAAPLEVVVDGTCFAHA 314 >gi|299534775|ref|ZP_07048105.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1] gi|298729863|gb|EFI70408.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1] Length = 331 Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 22/40 (55%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + + LG + I + + + GDVI LD+++ + + + Sbjct: 260 LPLSVELGLTDITIEDFLTMQVGDVIQLDQKIEAPLLLKV 299 >gi|239906894|ref|YP_002953635.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1] gi|239796760|dbj|BAH75749.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1] Length = 326 Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + +M PV++ + G + L++L GD++ L+ V E ++ I Sbjct: 250 ERLMETPVELLVRFGRSQITGRQLLSLKPGDILMLENDVDELLEAEIQG 298 >gi|56419765|ref|YP_147083.1| flagellar motor switch protein FliM [Geobacillus kaustophilus HTA426] gi|261419430|ref|YP_003253112.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61] gi|319766245|ref|YP_004131746.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52] gi|56379607|dbj|BAD75515.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] gi|261375887|gb|ACX78630.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61] gi|317111111|gb|ADU93603.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52] Length = 334 Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 22/41 (53%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + LG+ + ++ + L GDVI L++ + E + + I Sbjct: 260 KLPIIAELGTAVITVNEFLQLEAGDVIQLEQSIHEPLVVKI 300 >gi|322432987|ref|YP_004210236.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp. MP5ACTX9] gi|321165214|gb|ADW70918.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp. MP5ACTX9] Length = 100 Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 40/115 (34%), Gaps = 16/115 (13%) Query: 30 NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQ 89 +SP + ++ + + +P L P + + + Sbjct: 2 GTASPVSTTQQAAPQATIAVFKDPDPGKLVPWL-------------PCTLALEVSVVGFT 48 Query: 90 ISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 + +L+ L+KG ++ + + +N +A E ++ E R+ +++ Sbjct: 49 VGSLLKLTKGSLVQTSCHQSTDIPLHVNGILMAWTEFEVVGE---RLAARITDLV 100 >gi|229166617|ref|ZP_04294369.1| Flagellar motor switch protein [Bacillus cereus AH621] gi|228616871|gb|EEK73944.1| Flagellar motor switch protein [Bacillus cereus AH621] Length = 74 Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 32/53 (60%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +IP+ + +G+ +I +L++++KG + L+ +V + + N++I G+I Sbjct: 6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSAKNTVRLMLENEEIGTGKI 58 >gi|261407972|ref|YP_003244213.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10] gi|329929322|ref|ZP_08283075.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5] gi|261284435|gb|ACX66406.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10] gi|328936691|gb|EGG33134.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5] Length = 332 Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 IS ++ E+ + + + LG + +S + LS GDVI+L+K + + + Sbjct: 236 ISEKKASVPEEVDALKQRVSKAKLPIVAELGVSQLTVSEFLGLSVGDVISLNKPMHDGLS 295 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 I + ++ G +++ V++ EI+ Sbjct: 296 IKVGDKLKFIGSPGTIKD---RVAVQIDEIV 323 >gi|313672895|ref|YP_004051006.1| flagellar motor switch protein flim [Calditerrivibrio nitroreducens DSM 19672] gi|312939651|gb|ADR18843.1| flagellar motor switch protein FliM [Calditerrivibrio nitroreducens DSM 19672] Length = 342 Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 28/50 (56%) Query: 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 D++M + +++ +G + + +++ L +GD I + + E V + +NN Sbjct: 254 LDILMEAYLPLKLEIGPTILTVGDILELVEGDTIVFEHKAEEDVVLKVNN 303 >gi|218508017|ref|ZP_03505895.1| type III secretion system translocation protein [Rhizobium etli Brasil 5] Length = 52 Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 L + +G V LD+ + ++VDI + I +GEI ++ VRV Sbjct: 1 RTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGWS---AVRVT 48 >gi|251797432|ref|YP_003012163.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2] gi|247545058|gb|ACT02077.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2] Length = 333 Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 + + LG + I + L+ GDVI+L+K + + + I + + Sbjct: 258 KLPIVAELGESVITIKEFLGLAVGDVISLNKPIDDGLRIKVGEKL 302 >gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] Length = 331 Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 57 DSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+ E + + + ++ + + ++ILG+ + + + +NL+ GDV+TL+++ + +++ Sbjct: 238 SSDEEDEVTKEYLRMKLDSVQLVSEVILGNASVTVEDFLNLTVGDVVTLERKFEDPLEVV 297 Query: 116 INNQK 120 I + Sbjct: 298 IEERP 302 >gi|284041533|ref|YP_003391873.1| surface presentation of antigens (SPOA) protein [Conexibacter woesei DSM 14684] gi|283945754|gb|ADB48498.1| surface presentation of antigens (SPOA) protein [Conexibacter woesei DSM 14684] Length = 322 Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 V M+ +GS M I +++ L+ GD++ L + V + + I Sbjct: 255 VTMRAEVGSVEMAIDDVLGLAPGDLVKLSSLAADGVVVYAEDVPI 299 >gi|973194|gb|AAB00543.1| FliM' [Treponema pallidum] Length = 155 Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120 D + + + + +GS + + +++ L GD+I L D VG+ ++I N+K Sbjct: 63 DKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRK 114 >gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] Length = 325 Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + +M PV+M I +G + L+ L +GD+I LD E ++ + Sbjct: 250 ERLMETPVEMVIRMGRTTISGRQLLYLQEGDIILLDTDEDELLEAEVEG 298 >gi|237755434|ref|ZP_04584059.1| flagellar motor switch protein FliM [Sulfurihydrogenibium yellowstonense SS-5] gi|237692398|gb|EEP61381.1| flagellar motor switch protein FliM [Sulfurihydrogenibium yellowstonense SS-5] Length = 322 Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 3/89 (3%) Query: 58 SNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 S E + ++ + + + + L + + +N G I L+K+ E +D+ + Sbjct: 230 SEVSPEWRKELIKKLLKVNLNLTLELDKFSVLVEEFLNYEVGTEIILNKKQSEELDLKVE 289 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 ++ K + + D F + +I+ Sbjct: 290 DKVKFKA---SIGKLDKKFAAMITKIIKE 315 >gi|126732535|ref|ZP_01748333.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37] gi|126706981|gb|EBA06049.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37] Length = 368 Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 52 EPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +P+ + + I++ +P ++ +L + +S L GDV+ L K + Sbjct: 173 KPVPRSAEQGGADAAGPHAAILDRVPARLDAVLSRITLPLSRAQTLKPGDVLKLSKDALD 232 Query: 111 SVDITIN-NQKIAKGEITIMEEDDTHFGVRVI 141 V+I +AKG M + + VR+ Sbjct: 233 RVEIIAGRGHMVAKGR---MGQLNGARAVRLT 261 >gi|292669771|ref|ZP_06603197.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541] gi|292648568|gb|EFF66540.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541] Length = 333 Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S D + E+ + I V + LGS + I+ + L GDV+ LD + + Sbjct: 239 SVDKESTPEQVAELQRKIERTWVPFSVELGSVDITINEFLTLGFGDVLQLDTLAQDELVC 298 Query: 115 TI 116 + Sbjct: 299 YV 300 >gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] Length = 376 Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 54 ISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + ++ + E+S ++ V++ + L + +L+ L GDVIT K E + Sbjct: 260 FAYGTSEVSEESRQALSTQIDGASVEVGVTLAETKITTEDLLELRVGDVITTPKDSREPL 319 Query: 113 DITINN 118 +++N Sbjct: 320 KVSVNG 325 >gi|89068711|ref|ZP_01156097.1| possible flagellar motor switch protein FliM [Oceanicola granulosus HTCC2516] gi|89045674|gb|EAR51736.1| possible flagellar motor switch protein FliM [Oceanicola granulosus HTCC2516] Length = 316 Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 16/154 (10%) Query: 3 KKVSKISYIKDNLEGRSMHI-----DNPLQ----DTNVSSPTNNSEMLIQKNDVDNI--- 50 +++S++S+ D+LE I +P D V LI +D + Sbjct: 150 RQLSEVSFEIDSLESAPETIAIAPSGSPAVWVTLDLTVGERGGALYFLIPYTALDTVRPV 209 Query: 51 -SEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 ++P + + I + V + L + + + KG I L Sbjct: 210 LNQPFLGGKIGGDTSWRKDLEEKIEDTTVTLTASLHRLRVPVQEALGWRKGQTIDLGISA 269 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 + VD+ +++ +G+ + +R+IE Sbjct: 270 EQPVDVVCGERRMFRGQ--MGRRATGQVALRLIE 301 >gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565] gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565] Length = 356 Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V+ P + E + + D S+ +D + S D IM++ V++ Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 + L + + L+ L GD+I +D Sbjct: 259 RAKLLETELTLRELMELRPGDIIPVD 284 >gi|329902178|ref|ZP_08273067.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480] gi|327548849|gb|EGF33478.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480] Length = 317 Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +P+++ +G C + L L G V+ ++ ++ IT + + +GE+ + Sbjct: 251 LPLQLHFDMGCCHTTLGGLRTLVAGSVLPIEGGSPAAIGITAGGRTLGQGELVEVN---G 307 Query: 135 HFGVRVI 141 +R+I Sbjct: 308 KLAIRII 314 >gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] Length = 327 Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 27/45 (60%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 V ++ +LG + L++L GD ++L R + V++ ++++K+ Sbjct: 260 VDLKAVLGQTELSFGELLHLEVGDCLSLQTRTSDPVELFVDDRKM 304 >gi|255021379|ref|ZP_05293427.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] gi|254969242|gb|EET26756.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] Length = 337 Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 44/101 (43%), Gaps = 6/101 (5%) Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D ++ ++D + I ++ + D + +++++ + + L+ L GDVI L++ Sbjct: 229 DQLTAGTTADRSEIDKRWVQSLHDELREATLELRVEFARLPISVRQLLALRVGDVIPLER 288 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E++ ++ + +G + ++ E L + Sbjct: 289 P--ETLVARVDGIPVFRGP---YGVHGGKYAIQFHEALPPE 324 >gi|229160724|ref|ZP_04288716.1| Flagellar motor switch protein [Bacillus cereus R309803] gi|228622739|gb|EEK79573.1| Flagellar motor switch protein [Bacillus cereus R309803] Length = 74 Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 32/53 (60%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +IP+ + +G+ +I +L++++KG + L+ +V I + N++I G+I Sbjct: 6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRIMLENEEIGTGKI 58 >gi|85711035|ref|ZP_01042095.1| flagellar motor switch protein [Idiomarina baltica OS145] gi|85694948|gb|EAQ32886.1| flagellar motor switch protein [Idiomarina baltica OS145] Length = 354 Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +++ P + E + + D S+ +D + S D IM++PV+M Sbjct: 204 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTD----MRWSKALRDEIMDVPVEM 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 L + + +++ +GD+I L+ Sbjct: 260 VAKLADVDVTLREVMDFEEGDIIPLE 285 >gi|42528263|ref|NP_973361.1| flagellar motor switch protein FliM [Treponema denticola ATCC 35405] gi|4426948|gb|AAD20622.1| flagellar switch protein FliM [Treponema denticola] gi|41819533|gb|AAS13280.1| flagellar motor switch protein FliM [Treponema denticola ATCC 35405] gi|325474547|gb|EGC77733.1| flagellar switch protein FliM [Treponema denticola F0402] Length = 344 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120 D + + V M +GS + I +++NL GDV+ L + RVG+ +T+ ++ Sbjct: 252 DKLSTVEVDMVAEVGSLDVSIRDVLNLRAGDVVRLPNVRVGDPFKLTVGSRP 303 >gi|304438436|ref|ZP_07398376.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368519|gb|EFM22204.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 333 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 7/95 (7%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S D + E+ + I V + LG + I+ + L GDV+ LD + + Sbjct: 239 SMDRESSPEQVAELQRKIERTSVPFTVQLGEIHVTINEFLTLGFGDVLQLDTLTKDELVC 298 Query: 115 TI--NNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + N + +A+ V++ I+ + Sbjct: 299 YVGSNPKFLAR-----PGTAGKRMAVQISGIIEGE 328 >gi|291558209|emb|CBL35326.1| Flagellar motor switch protein [Eubacterium siraeum V10Sc8a] Length = 319 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 29/66 (43%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S + E+ + + + + +L + + +++NL D+I L+K + + Sbjct: 227 SGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITD 286 Query: 111 SVDITI 116 +V + + Sbjct: 287 NVQLKV 292 >gi|94496751|ref|ZP_01303326.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58] gi|94423764|gb|EAT08790.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58] Length = 93 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 10/101 (9%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-D 105 +D+ P S + D+F V+++ L + +S L + +G V+ L D Sbjct: 1 MDDADTPAMSPTPAGSTFPADDFS------VQLRFELDQTDVPLSRLQAVQQGGVLPLQD 54 Query: 106 KRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + V I + IA G+I + + +GV + +L Sbjct: 55 RDGALPVRIIAGGRAIAAGQIVSVGDS---YGVLIETVLKE 92 >gi|285018282|ref|YP_003375993.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473500|emb|CBA16003.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 346 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 11/128 (8%) Query: 8 ISYIKDNLEGRSMHIDNPLQD-----TNVSSPTNNSEMLIQKNDVDNISEPISSDSNNIL 62 I L R+ HI PL T P E + Q V ++ + D Sbjct: 209 IKITTPTLMLRASHIAFPLSLDQGVLTVADLPFPYQEQVSQTPSVPPVAHSVDDDPAPNE 268 Query: 63 EKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + +PV++ ++++ L L GDV+ L+ G + I N + + Sbjct: 269 SSPI----WVGELPVELSFAFEPLALKLAELSALRPGDVVPLE--SGVRLLIHANGRPVG 322 Query: 123 KGEITIME 130 + E+ +E Sbjct: 323 EAELVEVE 330 >gi|225620315|ref|YP_002721572.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae WA1] gi|296126963|ref|YP_003634215.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM 12563] gi|225215134|gb|ACN83868.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae WA1] gi|296018779|gb|ADG72016.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM 12563] Length = 343 Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120 + + NI V+ LGS + +S+++NL KGDV+ D ++ + V I N+K Sbjct: 255 EKLQNIFVETSAELGSMQLPLSDILNLQKGDVVKFTDTKITDPVIFKIGNRK 306 >gi|319944169|ref|ZP_08018445.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC 51599] gi|319742464|gb|EFV94875.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC 51599] Length = 349 Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 13/68 (19%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI----TINNQKIAKGEITIMEED 132 V++ L + + + L+ L GDVI ++ G + I N + E Sbjct: 279 VELVAELTTATLTLGELMKLRTGDVIEIETGPGAMLKIGQVPIFNGR---------YGEH 329 Query: 133 DTHFGVRV 140 + + VR+ Sbjct: 330 NGRYAVRI 337 >gi|167750716|ref|ZP_02422843.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702] gi|167656395|gb|EDS00525.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702] Length = 331 Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 29/66 (43%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S + E+ + + + + +L + + +++NL D+I L+K + + Sbjct: 239 SGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITD 298 Query: 111 SVDITI 116 +V + + Sbjct: 299 NVQLKV 304 >gi|229189860|ref|ZP_04316870.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876] gi|228593534|gb|EEK51343.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876] Length = 81 Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 32/53 (60%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +IP+ + +G+ +I +L++++KG + L+ +V + + N++I G+I Sbjct: 13 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKI 65 >gi|313895914|ref|ZP_07829468.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137 str. F0430] gi|312975339|gb|EFR40800.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137 str. F0430] Length = 334 Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 S D + ++ D I V + LG+ + I+ + L GDV+ LD + + Sbjct: 238 ASVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAKDELV 297 Query: 114 ITI 116 + Sbjct: 298 CYV 300 >gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5] gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5] Length = 329 Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 32/55 (58%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 +Q +LG M + +++L GD++TL +V + + + + + K GEI I++ + Sbjct: 261 NLQAVLGESTMTLREILDLEIGDILTLSTKVRDPMVLQVGDMKKYYGEIGIIDNN 315 >gi|284989543|ref|YP_003408097.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM 43160] gi|284062788|gb|ADB73726.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM 43160] Length = 321 Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 3/110 (2%) Query: 15 LEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMN 74 + ++ I + + + P ++ ++ + +SE + E + Sbjct: 186 VASYTIGIGSRSGEATLVLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLT---Q 242 Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 +PV + + + +L++L+ GDV+ L +++T N A Sbjct: 243 VPVDVGVRFAPLEVSSEDLLSLAVGDVLLLRHPQDAPLEVTTNEVTFAYA 292 >gi|291532053|emb|CBK97638.1| Flagellar motor switch protein [Eubacterium siraeum 70/3] Length = 319 Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 29/66 (43%) Query: 51 SEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 S + E+ + + + + +L + + +++NL D+I L+K + + Sbjct: 227 SGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTVLTLRDVLNLQVNDIIPLNKPITD 286 Query: 111 SVDITI 116 +V + + Sbjct: 287 NVQLKV 292 >gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1] gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1] Length = 332 Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 21/40 (52%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 V + LG + I + + L GDVI L+KR+ + I + Sbjct: 260 VPIVAELGDSDITIDDFLMLDIGDVIQLNKRIDAPLTIKV 299 >gi|312962467|ref|ZP_07776958.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6] gi|311283394|gb|EFQ61984.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6] Length = 109 Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 91 SNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 L + G V+ L V V++ +N Q A GE+ +E+ GV + E+ Sbjct: 52 KRLAAFAPGKVLPLAPTVIHGVEVRVNGQLFALGELVQLED---RLGVELHEV 101 >gi|294675223|ref|YP_003575839.1| family 3 glycosyl hydrolase [Prevotella ruminicola 23] gi|294471943|gb|ADE81332.1| glycosyl hydrolase, family 3 [Prevotella ruminicola 23] Length = 823 Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 17/100 (17%) Query: 31 VSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQII-------- 82 ++ + I ++ V + + EK +L ++I KM + Sbjct: 13 AATMMQAQQPAIPRDAVLEAKIEKTLAKMTLDEKIGQMLELNLDIIGKMTVENAKVDREK 72 Query: 83 -------LGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 G +I +L+ ++ +I DK G VDI Sbjct: 73 VRSVMQQYGRSEAEIKDLLKMTDQQII--DKLGGFPVDIY 110 >gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] Length = 347 Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + ST D IM++PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALRDEIMDVPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L+ L GDVI ++ E + + + M V+ Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYR---VKMGRSGEKLAVQ 314 Query: 140 VIE 142 + E Sbjct: 315 ISE 317 >gi|320529422|ref|ZP_08030510.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399] gi|320138388|gb|EFW30282.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399] Length = 334 Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 S D + ++ D I V + LG+ + I+ + L GDV+ LD + + Sbjct: 239 SVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAKDELVC 298 Query: 115 TI 116 + Sbjct: 299 YV 300 >gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis HTE831] gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] Length = 330 Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 24/37 (64%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 V+++ ILG+ + I + +N +GD+I+LD+ + + Sbjct: 257 EVELKAILGATTISIHDFLNFQQGDIISLDQPIDAPL 293 >gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01] gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01] Length = 347 Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + ST D IM++PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALRDEIMDVPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L+ L GDVI ++ E + + + M V+ Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYR---VKMGRSGEKLAVQ 314 Query: 140 VIE 142 + E Sbjct: 315 ISE 317 >gi|258404714|ref|YP_003197456.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM 5692] gi|257796941|gb|ACV67878.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM 5692] Length = 336 Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL--DKRVGESVDITINNQKIAKGEIT 127 D +M + +++ + + I ++NL GD+I L D++ G+ V + + + Sbjct: 255 DEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQRV--LVEQKPKFQA--- 309 Query: 128 IMEEDDTHFGVRVI 141 + VR+ Sbjct: 310 VAGTRKGKKAVRIT 323 >gi|310659031|ref|YP_003936752.1| flim [Clostridium sticklandii DSM 519] gi|308825809|emb|CBH21847.1| FliM [Clostridium sticklandii] Length = 332 Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + + ++ D LE + + + ++G + + + L +GDVI L + Sbjct: 235 FSTVKKELNEDDKGYLETRVKRAN------IDINAVVGDTYITVEEFIYLQEGDVIKLSR 288 Query: 107 RVGESVDITINNQ 119 ++ E +++ + + Sbjct: 289 KIDEDLELHVEGK 301 >gi|195952553|ref|YP_002120843.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1] gi|195932165|gb|ACG56865.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1] Length = 321 Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S+ ++ ++ + N +LI N+ V + + + + +++ GD ITL V + Sbjct: 230 SEVSDYVDYDSINKNLIKNLTVSLSVAIDGGDFMVKDILEWEVGDTITLKTSANRPVKVN 289 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 I G ++ ++ V+++++L+ + Sbjct: 290 IEGMLKMYG---VLGRSNSKKAVKILKLLDNK 318 >gi|220905099|ref|YP_002480411.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869398|gb|ACL49733.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 326 Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + +M PV++++ G + + L+ + GD++ LDK + +D T+ Sbjct: 250 ERLMETPVELKVCFGKTTITGNQLLRMQVGDILVLDKDEEDMLDCTVAG 298 >gi|42780855|ref|NP_978102.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|229195974|ref|ZP_04322727.1| Flagellar motor switch protein [Bacillus cereus m1293] gi|42736775|gb|AAS40710.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] gi|228587533|gb|EEK45598.1| Flagellar motor switch protein [Bacillus cereus m1293] Length = 79 Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 32/53 (60%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +IP+ + +G+ +I +L++++KG + L+ +V + + N++I G+I Sbjct: 11 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKI 63 >gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] Length = 334 Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134 V + L + L+ + GD I LD+ E + +I I + + ++ Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EPRIQASIGGVPIFECQ---YGTHNS 310 Query: 135 HFGVRVIE 142 + +R+ E Sbjct: 311 KYAIRIEE 318 >gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32] gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32] Length = 347 Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S+ D IM++PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALRDEIMDVPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L+ L GDVI ++ E + + + M V+ Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYR---VKMGRSGEKLAVQ 314 Query: 140 VIE 142 + E Sbjct: 315 ISE 317 >gi|238563925|ref|ZP_04610802.1| type III secretion inner membrane protein SctQ [Burkholderia mallei GB8 horse 4] gi|238519669|gb|EEP83138.1| type III secretion inner membrane protein SctQ [Burkholderia mallei GB8 horse 4] Length = 160 Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + ++ D+ + D + + Sbjct: 38 PADRAGDLPAPSAAHSSPGSLAGLPAGLQ-----ADAPPRDARYAAPEPAD----LGEVA 88 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 89 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 145 Query: 136 FGVRV 140 GVR+ Sbjct: 146 LGVRI 150 >gi|229011055|ref|ZP_04168249.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048] gi|228750227|gb|EEM00059.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048] Length = 74 Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 32/53 (60%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +IP+ + +G+ +I +L++++KG + L+ +V I + N++I G+I Sbjct: 6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTENTVLIMLENEEIGTGKI 58 >gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] Length = 334 Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134 V + L + L+ + GD I LD+ E + +I I + + ++ Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EPRIQASIGGVPIFECQ---YGTHNS 310 Query: 135 HFGVRVIE 142 + +R+ E Sbjct: 311 KYAIRIEE 318 >gi|138894751|ref|YP_001125204.1| flagellar motor switch protein FliM [Geobacillus thermodenitrificans NG80-2] gi|196247627|ref|ZP_03146329.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16] gi|134266264|gb|ABO66459.1| Flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] gi|196212411|gb|EDY07168.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16] Length = 334 Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + + LG+ + + + L GDVI L + + E + + I Sbjct: 261 LPIVAELGTAVVTVGEFLQLEVGDVIQLKQSIHEPLVVKI 300 >gi|152975176|ref|YP_001374693.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023928|gb|ABS21698.1| flagellar motor switch protein, putative [Bacillus cytotoxicus NVH 391-98] Length = 74 Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 31/53 (58%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +IP+ + +G +I +L++++KG + L+ +V + + N++I G+I Sbjct: 6 DIPLTIYFEIGKTKKKIEDLLHITKGTLYRLEDSTKNTVRLMLENEEIGTGKI 58 >gi|30019807|ref|NP_831438.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|47565431|ref|ZP_00236472.1| flagellar motor switch protein fliN VC2125, putative [Bacillus cereus G9241] gi|49477320|ref|YP_035881.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143696|ref|YP_083132.1| flagellar motor switch protein [Bacillus cereus E33L] gi|75763359|ref|ZP_00743097.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118477196|ref|YP_894347.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|163939572|ref|YP_001644456.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|196033551|ref|ZP_03100963.1| flagellar motor switch protein FliN domain protein [Bacillus cereus W] gi|196038931|ref|ZP_03106238.1| flagellar motor switch protein FliN domain protein [Bacillus cereus NVH0597-99] gi|196045029|ref|ZP_03112262.1| flagellar motor switch protein FliN domain protein [Bacillus cereus 03BB108] gi|206970641|ref|ZP_03231593.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH1134] gi|206974901|ref|ZP_03235816.1| flagellar motor switch protein FliN domain protein [Bacillus cereus H3081.97] gi|217959245|ref|YP_002337793.1| flagellar motor switch protein [Bacillus cereus AH187] gi|218235179|ref|YP_002366447.1| flagellar motor switch protein [Bacillus cereus B4264] gi|218896696|ref|YP_002445107.1| flagellar motor switch protein FliN domain protein [Bacillus cereus G9842] gi|218902876|ref|YP_002450710.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH820] gi|222095385|ref|YP_002529445.1| flagellar motor switch protein [Bacillus cereus Q1] gi|225863620|ref|YP_002748998.1| hypothetical protein BCA_1722 [Bacillus cereus 03BB102] gi|228900344|ref|ZP_04064573.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222] gi|228907395|ref|ZP_04071253.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200] gi|228914340|ref|ZP_04077955.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228920472|ref|ZP_04083817.1| Flagellar motor switch protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926798|ref|ZP_04089866.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933046|ref|ZP_04095909.1| Flagellar motor switch protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228938875|ref|ZP_04101475.1| Flagellar motor switch protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228945365|ref|ZP_04107720.1| Flagellar motor switch protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228952145|ref|ZP_04114237.1| Flagellar motor switch protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958043|ref|ZP_04119778.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964746|ref|ZP_04125853.1| Flagellar motor switch protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228971756|ref|ZP_04132377.1| Flagellar motor switch protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978365|ref|ZP_04138742.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407] gi|228984847|ref|ZP_04145017.1| Flagellar motor switch protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229017048|ref|ZP_04173967.1| Flagellar motor switch protein [Bacillus cereus AH1273] gi|229023229|ref|ZP_04179739.1| Flagellar motor switch protein [Bacillus cereus AH1272] gi|229029442|ref|ZP_04185525.1| Flagellar motor switch protein [Bacillus cereus AH1271] gi|229043518|ref|ZP_04191227.1| Flagellar motor switch protein [Bacillus cereus AH676] gi|229058411|ref|ZP_04196795.1| Flagellar motor switch protein [Bacillus cereus AH603] gi|229069313|ref|ZP_04202603.1| Flagellar motor switch protein [Bacillus cereus F65185] gi|229078944|ref|ZP_04211496.1| Flagellar motor switch protein [Bacillus cereus Rock4-2] gi|229090725|ref|ZP_04221958.1| Flagellar motor switch protein [Bacillus cereus Rock3-42] gi|229096247|ref|ZP_04227220.1| Flagellar motor switch protein [Bacillus cereus Rock3-29] gi|229102361|ref|ZP_04233069.1| Flagellar motor switch protein [Bacillus cereus Rock3-28] gi|229109218|ref|ZP_04238817.1| Flagellar motor switch protein [Bacillus cereus Rock1-15] gi|229115202|ref|ZP_04244612.1| Flagellar motor switch protein [Bacillus cereus Rock1-3] gi|229121314|ref|ZP_04250545.1| Flagellar motor switch protein [Bacillus cereus 95/8201] gi|229127089|ref|ZP_04256086.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4] gi|229132590|ref|ZP_04261438.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196] gi|229138462|ref|ZP_04267051.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26] gi|229144375|ref|ZP_04272780.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24] gi|229149967|ref|ZP_04278193.1| Flagellar motor switch protein [Bacillus cereus m1550] gi|229155333|ref|ZP_04283443.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342] gi|229172408|ref|ZP_04299967.1| Flagellar motor switch protein [Bacillus cereus MM3] gi|229178170|ref|ZP_04305541.1| Flagellar motor switch protein [Bacillus cereus 172560W] gi|229183954|ref|ZP_04311169.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1] gi|296502363|ref|YP_003664063.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|300117314|ref|ZP_07055104.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|301053300|ref|YP_003791511.1| flagellar motor switch protein [Bacillus anthracis CI] gi|29895352|gb|AAP08639.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579] gi|47557421|gb|EAL15748.1| flagellar motor switch protein fliN VC2125, putative [Bacillus cereus G9241] gi|49328876|gb|AAT59522.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977165|gb|AAU18715.1| flagellar motor switch protein N [Bacillus cereus E33L] gi|74489150|gb|EAO52628.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118416421|gb|ABK84840.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|163861769|gb|ABY42828.1| flagellar motor switch protein, putative [Bacillus weihenstephanensis KBAB4] gi|195993985|gb|EDX57941.1| flagellar motor switch protein FliN domain protein [Bacillus cereus W] gi|196024031|gb|EDX62705.1| flagellar motor switch protein FliN domain protein [Bacillus cereus 03BB108] gi|196030076|gb|EDX68676.1| flagellar motor switch protein FliN domain protein [Bacillus cereus NVH0597-99] gi|206734277|gb|EDZ51447.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH1134] gi|206746920|gb|EDZ58312.1| flagellar motor switch protein FliN domain protein [Bacillus cereus H3081.97] gi|217063362|gb|ACJ77612.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH187] gi|218163136|gb|ACK63128.1| flagellar motor switch protein FliN domain protein [Bacillus cereus B4264] gi|218539681|gb|ACK92079.1| flagellar motor switch protein FliN domain protein [Bacillus cereus AH820] gi|218542965|gb|ACK95359.1| flagellar motor switch protein FliN domain protein [Bacillus cereus G9842] gi|221239443|gb|ACM12153.1| flagellar motor switch protein [Bacillus cereus Q1] gi|225788270|gb|ACO28487.1| conserved domain protein [Bacillus cereus 03BB102] gi|228599479|gb|EEK57084.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1] gi|228605300|gb|EEK62750.1| Flagellar motor switch protein [Bacillus cereus 172560W] gi|228610879|gb|EEK68142.1| Flagellar motor switch protein [Bacillus cereus MM3] gi|228628048|gb|EEK84765.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342] gi|228633489|gb|EEK90092.1| Flagellar motor switch protein [Bacillus cereus m1550] gi|228639006|gb|EEK95431.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24] gi|228644999|gb|EEL01242.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26] gi|228650822|gb|EEL06809.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196] gi|228656205|gb|EEL12046.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4] gi|228662159|gb|EEL17768.1| Flagellar motor switch protein [Bacillus cereus 95/8201] gi|228668342|gb|EEL23774.1| Flagellar motor switch protein [Bacillus cereus Rock1-3] gi|228674228|gb|EEL29473.1| Flagellar motor switch protein [Bacillus cereus Rock1-15] gi|228681008|gb|EEL35177.1| Flagellar motor switch protein [Bacillus cereus Rock3-28] gi|228687207|gb|EEL41112.1| Flagellar motor switch protein [Bacillus cereus Rock3-29] gi|228692667|gb|EEL46393.1| Flagellar motor switch protein [Bacillus cereus Rock3-42] gi|228704358|gb|EEL56792.1| Flagellar motor switch protein [Bacillus cereus Rock4-2] gi|228713800|gb|EEL65685.1| Flagellar motor switch protein [Bacillus cereus F65185] gi|228719920|gb|EEL71510.1| Flagellar motor switch protein [Bacillus cereus AH603] gi|228725740|gb|EEL76988.1| Flagellar motor switch protein [Bacillus cereus AH676] gi|228731901|gb|EEL82800.1| Flagellar motor switch protein [Bacillus cereus AH1271] gi|228738023|gb|EEL88509.1| Flagellar motor switch protein [Bacillus cereus AH1272] gi|228744221|gb|EEL94304.1| Flagellar motor switch protein [Bacillus cereus AH1273] gi|228774797|gb|EEM23193.1| Flagellar motor switch protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228781382|gb|EEM29583.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407] gi|228787846|gb|EEM35804.1| Flagellar motor switch protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794996|gb|EEM42495.1| Flagellar motor switch protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228801560|gb|EEM48442.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807499|gb|EEM54026.1| Flagellar motor switch protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228814337|gb|EEM60603.1| Flagellar motor switch protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228820724|gb|EEM66749.1| Flagellar motor switch protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228826647|gb|EEM72418.1| Flagellar motor switch protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832911|gb|EEM78480.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839102|gb|EEM84398.1| Flagellar motor switch protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228845334|gb|EEM90370.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228852256|gb|EEM97052.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200] gi|228859231|gb|EEN03662.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222] gi|296323415|gb|ADH06343.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|298725149|gb|EFI65801.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|300375469|gb|ADK04373.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] gi|324325780|gb|ADY21040.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326939375|gb|AEA15271.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 74 Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 32/53 (60%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 +IP+ + +G+ +I +L++++KG + L+ +V + + N++I G+I Sbjct: 6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKI 58 >gi|307293811|ref|ZP_07573655.1| surface presentation of antigens (SPOA) protein [Sphingobium chlorophenolicum L-1] gi|306879962|gb|EFN11179.1| surface presentation of antigens (SPOA) protein [Sphingobium chlorophenolicum L-1] Length = 299 Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +I + + +L + ++ L+ L GDVI + + S+ + + ++ +A G + E D Sbjct: 224 DIRLPARTVLARPDLSLAELMQLKAGDVIPVT--INRSLPLIVGDRIVAHG---TIGEQD 278 Query: 134 THFGVRVIEILNAQ 147 ++ +I Q Sbjct: 279 GRAAFQIEKISGNQ 292 >gi|222053613|ref|YP_002535975.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32] gi|221562902|gb|ACM18874.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32] Length = 328 Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 27/49 (55%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + + P+++ + +G+ + ++ L+NLS GD + L++ + + + Sbjct: 250 EELKEAPLEISVEMGNSSITLAELLNLSPGDTVMLEESGRNELLVKVGG 298 >gi|94495436|ref|ZP_01302016.1| flagellar switch protein [Sphingomonas sp. SKA58] gi|94424824|gb|EAT09845.1| flagellar switch protein [Sphingomonas sp. SKA58] Length = 295 Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +I + + +L + +++L+ L GDVI + +G ++ + + N+ +A G + E D Sbjct: 225 DIRLPARTVLARPNLSLADLMELKVGDVIPVT--IGRALPLIVGNRIVAHG---TIGEQD 279 Query: 134 THFGVRV 140 ++ Sbjct: 280 GRAAFQI 286 >gi|167743329|ref|ZP_02416103.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 14] Length = 177 Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + P + + + + D + + Sbjct: 55 PADRAGDLPADSAAHSSPGSLAGL--------QAGLPADAPPRDARYAAPEPAD-LGEVA 105 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 106 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 162 Query: 136 FGVRV 140 GVR+ Sbjct: 163 LGVRI 167 >gi|46579323|ref|YP_010131.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. Hildenborough] gi|120603117|ref|YP_967517.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4] gi|46448737|gb|AAS95390.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. Hildenborough] gi|120563346|gb|ABM29090.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4] gi|311233150|gb|ADP86004.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris RCH1] Length = 326 Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + +M PV++++ G + + L+ L GDV+ LD + +++TI Sbjct: 250 ERLMETPVELKVRFGETKITGNQLLRLQVGDVLLLDTDTDDMLEVTIAG 298 >gi|84502561|ref|ZP_01000697.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597] gi|84389373|gb|EAQ02170.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597] Length = 317 Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 9/100 (9%) Query: 52 EPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 +P S + N ++I + V + L + + ++ +G V+ L V + Sbjct: 214 QPFHGGSLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQEVLEWKRGQVLDLGIEVDQ 273 Query: 111 SVDITINNQKIAKGEITIME---EDDTHFGVRVIEILNAQ 147 V + + E+ + + + +++ E L + Sbjct: 274 PVSLICSGH-----EMYMAQTGKRKNGRMALKITEQLKDE 308 >gi|167898939|ref|ZP_02486340.1| type III secretion inner membrane protein SctQ [Burkholderia pseudomallei 7894] Length = 174 Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 D P SSP + + + ++ D+ + D + + Sbjct: 52 PADRAGDLPAPSAAHSSPGSLAGLPAGLQ-----ADAPPRDARYAAPEPAD----LGEVA 102 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTH 135 + + + + + + I+ L L G V+ L + V + Q I G + + H Sbjct: 103 LPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AH 159 Query: 136 FGVRV 140 GVR+ Sbjct: 160 LGVRI 164 >gi|256370968|ref|YP_003108792.1| surface presentation of antigens (SPOA) protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007552|gb|ACU53119.1| surface presentation of antigens (SPOA) protein [Acidimicrobium ferrooxidans DSM 10331] Length = 302 Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 26/53 (49%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 + ++ +++ + + L+ L+ GDV+ L R G+ + ++ ++ + Sbjct: 228 LHDVRLEVSVRFEPTSISSRTLLELAPGDVVPLGHRQGQPAWVIVDRTRLHRA 280 >gi|157364676|ref|YP_001471443.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO] gi|157315280|gb|ABV34379.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO] Length = 330 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 8/97 (8%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 ++ + EK ++ + + +K+ ILG + + +++L GDVI L + V Sbjct: 233 FTAKREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVKEILDLEVGDVIRLQTHKDDDV 292 Query: 113 DITINNQK--IAKGEITIMEEDDTHFGVRVIEILNAQ 147 + + ++ +A+ + H V+V IL + Sbjct: 293 MVEVQSKPKFMARPGV-----FKGHRAVKVTRILKPE 324 >gi|149926087|ref|ZP_01914350.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105] gi|149825375|gb|EDM84586.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105] Length = 359 Score = 37.9 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 39 EMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSK 98 E+ IQ N+ D S D ++ +N I +++ G + + L ++ + Sbjct: 258 EVFIQMNEDDTRLHFGSDDLSDTSGLEEENLPPHEQIELEIHA--GKTKILFNELCSVQE 315 Query: 99 GDVITLDKRVGESVDITINNQKIAKGEIT 127 G +I L + V + + I +GE+ Sbjct: 316 GTLIELREHALPMVTLCVMGSPILEGELV 344 >gi|320538201|ref|ZP_08038096.1| flagellar motor switch protein FliM [Treponema phagedenis F0421] gi|320145018|gb|EFW36739.1| flagellar motor switch protein FliM [Treponema phagedenis F0421] Length = 344 Score = 37.9 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESVDITINNQK 120 D + + + + +G + + ++++L GDVI L D VG+ +++ N+K Sbjct: 252 DKLSTVDMDVVAEVGFLNLSVRDVLSLRIGDVIRLKDTHVGDPFTLSVGNRK 303 >gi|323166472|gb|EFZ52236.1| surface presentation of antigens family protein [Shigella sonnei 53G] Length = 162 Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 56 SDSNNILEKSTDNFDLIM--NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 S+SN E + + L +I VK+ IL M I+ L + ++ + + V+ Sbjct: 72 SESNGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVN 131 Query: 114 ITINNQKIAKGEITIMEEDDTHFGVRVIE 142 I +N + GE+ +E+ +G+ + Sbjct: 132 IKVNGSLVGHGELVSIEDG---YGIEISS 157 >gi|94986472|ref|YP_594405.1| flagellar motor switch protein [Lawsonia intracellularis PHE/MN1-00] gi|94730721|emb|CAJ54083.1| Flagellar motor switch protein [Lawsonia intracellularis PHE/MN1-00] Length = 325 Score = 37.9 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + ++ PV++++ +G+ + + L+ L GDV+ LD V + ++ T+ Sbjct: 250 ERLLETPVELKVRMGNTQITGNQLLRLKIGDVLVLDTDVEDLLECTVAG 298 >gi|239628949|ref|ZP_04671980.1| flagellar motor switch protein FliM [Clostridiales bacterium 1_7_47_FAA] gi|239519095|gb|EEQ58961.1| flagellar motor switch protein FliM [Clostridiales bacterium 1_7_47FAA] Length = 296 Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 7 KISYIKDNLEGR-SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS 65 ++ + D L R +M + P + S + +K D + ++LE Sbjct: 172 ELEVVIDKLSARLNMVMPAPNVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLES- 230 Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 V+++ IL + +++ L+ GDVI L+K+V + I + + Sbjct: 231 ----------EVELRAILHEFTLDAQDILQLTPGDVIPLNKKVDSGISIYVED 273 >gi|319649555|ref|ZP_08003711.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2] gi|317398717|gb|EFV79399.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2] Length = 332 Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 54 ISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + +D + + I V + LGS + I + ++L GDVI L++ + +++ Sbjct: 236 MQTDKKEREPEVIARLERNIHKAEVPVICELGSSDIAIQDFLSLDIGDVIELNQGIDQAL 295 Query: 113 DITINN 118 I + N Sbjct: 296 IIKVGN 301 >gi|32266646|ref|NP_860678.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC 51449] gi|32262697|gb|AAP77744.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC 51449] Length = 353 Score = 37.9 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 34/64 (53%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 SD+++ ++ + LI V + LG + + +++L GD++ LD +++ ++ Sbjct: 238 SDTSSKKSRNKELQALIAGANVIVSGYLGDATLTLKEILDLQVGDIVRLDTIADDTIIVS 297 Query: 116 INNQ 119 ++ + Sbjct: 298 VDGR 301 >gi|260899856|ref|ZP_05908251.1| conserved domain protein [Vibrio parahaemolyticus AQ4037] gi|221271468|dbj|BAH15020.1| putative type III secretion system apparatus protein VscQ2 [Vibrio parahaemolyticus] gi|308107308|gb|EFO44848.1| conserved domain protein [Vibrio parahaemolyticus AQ4037] gi|328469630|gb|EGF40566.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus 10329] Length = 71 Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + + + +++ C M + L++L KG++I +D V V + N+ IA G + +++ Sbjct: 1 MKIAIDVVIAHCSMTLEELLHLQKGNMIKIDDFVQSEVMLKSGNELIATGTLIKIDD--- 57 Query: 135 HFGVRVIEI 143 +GV + + Sbjct: 58 QYGVSIDNV 66 >gi|297538201|ref|YP_003673970.1| flagellar motor switch protein FliM [Methylotenera sp. 301] gi|297257548|gb|ADI29393.1| flagellar motor switch protein FliM [Methylotenera sp. 301] Length = 334 Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V++ L M I +++N+ GDV+ L+ + ES++ ++ + + + Sbjct: 256 EVEIVADLAKTNMMIGDVLNMKVGDVVPLN--IEESIEAQVDGVPVM---LCKYGMFNGQ 310 Query: 136 FGVRVIEILNA 146 + +RV ++L + Sbjct: 311 YALRVEKLLRS 321 >gi|148266212|ref|YP_001232918.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4] gi|146399712|gb|ABQ28345.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4] Length = 328 Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 24/43 (55%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 P+++ + +G+ + + L+NL+ GD I L+ R + + + Sbjct: 256 PLEISVEMGNSVITLDELLNLAPGDTIMLNNRGRSELLVKVGG 298 >gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 349 Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S D IM++PV + Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVNL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 + L + + +L+ L GDVI +D Sbjct: 259 RAKLLDVDLSLRDLMELQVGDVIPID 284 >gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 349 Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S D IM++PV + Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVNL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 + L + + +L+ L GDVI +D Sbjct: 259 RAKLLDVDLSLRDLMELQVGDVIPID 284 >gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14] gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14] Length = 349 Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S D IM++PV + Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSKALRDEIMDVPVNL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 + L + + +L+ L GDVI +D Sbjct: 259 RAKLLDVDLSLRDLMELQVGDVIPID 284 >gi|167566199|ref|ZP_02359115.1| type III secretion system protein BsaV [Burkholderia oklahomensis EO147] Length = 326 Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 P + + ++ P + T + D + PV ++ +L + ++ Sbjct: 212 EPLSEDAIDDLHDERAAAEAPQDAPPPQDAPPPTFDIDAL---PVTLEFVLQDERVTVAQ 268 Query: 93 LVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 L + G V+ + GE V I N + GE+ + E Sbjct: 269 LASCHPGLVLPVRGAPGE-VTIRANGRPFGCGELIQVGEQ 307 >gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9] gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium profundum SS9] Length = 348 Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + D + S + IM++PV + Sbjct: 203 IELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKD----VRWSMALREEIMDVPVNL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + L + + +L+ L GD+I +D V ES + + + + + M + + ++ Sbjct: 259 RAKLLDVDLSLRDLMELQAGDIIPID--VPESATVFVEDLPTYRAK---MGKSGDNIALK 313 Query: 140 VIE 142 + + Sbjct: 314 ITQ 316 >gi|146277687|ref|YP_001167846.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] gi|145555928|gb|ABP70541.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] Length = 323 Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 N E S I PLQ S S M D D EK I Sbjct: 207 PNTEPASFDILYPLQTLKPISSQLRSRMQSDFVD----------DDRTWREKLER---AI 253 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEED 132 ++IP+ + L + + L+ + GDV+ + ++ E+V + + N+ I +G + E Sbjct: 254 LSIPLTLSARLCEPEVPLRQLMQIQPGDVLPV--QLTEAVSLLVENEPIFEG---VPGER 308 Query: 133 DTHFGVRVI 141 + + Sbjct: 309 GGQAALNLT 317 >gi|284007672|emb|CBA73390.1| type III secretion inner membrane protein YscQ,SpaO [Arsenophonus nasoniae] Length = 234 Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 50 ISEPISSDSN--NILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + +P++SD + N +S+ + + +K+ IL ++ + + G + L+ Sbjct: 135 LEQPVTSDQDDHNASPESSTAIFDLNQLALKVNFILQRQTFSLNTIKSWQTGTQLRLNSD 194 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ + IN Q AKGE+ + E V + +L+ + Sbjct: 195 AHCAIALEINGQIFAKGELIQVGE---QLAVELHTLLSTE 231 >gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK] gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK] Length = 348 Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + D + S + IM++PV + Sbjct: 203 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKD----VRWSMALREEIMDVPVNL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + L + + +L+ L GD+I +D V ES + + + + + M + + ++ Sbjct: 259 RAKLLDVDLSLRDLMELQAGDIIPID--VPESATVFVEDLPTYRAK---MGKSGDNIALK 313 Query: 140 VIE 142 + + Sbjct: 314 ITQ 316 >gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 356 Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V+ P + E + + D S+ +D + S D IM++ V++ Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 + L + + L+ L GD+I ++ Sbjct: 259 RAKLLETELTLRELMELQPGDIIPVE 284 >gi|260775668|ref|ZP_05884564.1| hypothetical protein VIC_001047 [Vibrio coralliilyticus ATCC BAA-450] gi|260608084|gb|EEX34253.1| hypothetical protein VIC_001047 [Vibrio coralliilyticus ATCC BAA-450] Length = 106 Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 10/92 (10%) Query: 47 VDNISEPISSDSNNILEKSTDNFDLIMNIP--------VKMQIILGSCCMQISNLVNLSK 98 +D + S DS +L S ++ ++P V + + +G + +S + Sbjct: 1 MDGQDDVKSEDSALLLGGSDEHLSSESDMPNDQTGRITVNLGLEIGRVRLPLSEWAQVGP 60 Query: 99 GDVITLDKR-VGESVDITINNQKIAKGEITIM 129 G V+ L VGE+ +A GE+ + Sbjct: 61 GSVLMLSGVGVGEAYLTDAEG-VVAYGELVDV 91 >gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp. salmonicida A449] gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 356 Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V+ P + E + + D S+ +D + S D IM++ V++ Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 + L + + L+ L GD+I ++ E++ + + + + M + ++ Sbjct: 259 RAKLLETDLTLRELMELKPGDIIPVEMP--ENLLVYVEDLPTFHAK---MGRTKDNVALK 313 Query: 140 VIE 142 + + Sbjct: 314 ITD 316 >gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila] Length = 356 Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V+ P + E + + D S+ +D + S D IM++ V++ Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 + L + + L+ L GD+I ++ Sbjct: 259 RAKLLETELTLRELMELQPGDIIPVE 284 >gi|289208344|ref|YP_003460410.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix] gi|288943975|gb|ADC71674.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix] Length = 324 Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 48 DNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + + + SD +++ ++ + I + V++ L + + L+++ GD+I ++ Sbjct: 229 EQLDTGLQSDRSDVDQRWMKALEEEIQDAEVEVSSTLTETEVTVQELLDIQPGDIIPIN- 287 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 + E+V + + + + +G+ + D ++V + Sbjct: 288 -LPETVTLKVEDIPLFRGKFGV---SDGKNAIQVTD 319 >gi|251768328|ref|ZP_02270322.2| type III secretion inner membrane protein SctQ [Burkholderia mallei PRL-20] gi|243060179|gb|EES42365.1| type III secretion inner membrane protein SctQ [Burkholderia mallei PRL-20] Length = 100 Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIME 130 + + + + + + + + I+ L L G V+ L + V + Q I G + + Sbjct: 24 LGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG 83 Query: 131 EDDTHFGVRV 140 H GVR+ Sbjct: 84 ---AHLGVRI 90 >gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893] gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893] Length = 332 Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D + + SD +++ E+ + I ++ V + + + + ++ L +GD+I ++ Sbjct: 225 DVLDAGVQSDIDDVDERWVSALQEDIKDVNVPINTTVCRRRISLRDIAKLKEGDIIPVE- 283 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 + E + +T N + K M D +R+ + Sbjct: 284 -IPELLTLTANGIPVYKA---TMGTRDGKLALRIHD 315 >gi|89899368|ref|YP_521839.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118] gi|89344105|gb|ABD68308.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118] Length = 329 Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 + + L + L+ + GD I LD+ +++T+ + + + + Sbjct: 257 EITLVAELARADATVEQLLAMKTGDFIELDRPSR--IEVTVEGVPVFECQ---YGTHNAK 311 Query: 136 FGVRV 140 + +R+ Sbjct: 312 YAIRI 316 >gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum JL354] Length = 339 Score = 37.5 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I+ V++ +LG M+++++ +L G I D + ++ +A+ + + Sbjct: 264 ILRTEVEIYTVLGEREMRLADVHSLEIGQTIPFDVTPDDPFEVCCGGVPLARAQ---IGR 320 Query: 132 DDTHFGVRVIEILN 145 H + +++ + Sbjct: 321 QRNHVAIGIVDTIK 334 >gi|261252329|ref|ZP_05944902.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891] gi|260935720|gb|EEX91709.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891] Length = 349 Score = 37.5 bits (86), Expect = 0.70, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + ST + IM++PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 ++ L + + +L+ L GD+I ++ Sbjct: 260 RVQLLEQDISLRDLMELQPGDIIPIN 285 >gi|269103169|ref|ZP_06155866.1| flagellar motor switch protein FliM [Photobacterium damselae subsp. damselae CIP 102761] gi|268163067|gb|EEZ41563.1| flagellar motor switch protein FliM [Photobacterium damselae subsp. damselae CIP 102761] Length = 347 Score = 37.1 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S + IM+IPV + Sbjct: 203 IELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTD----VRWSRALREEIMDIPVNI 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 + L + + +L+ L GD+I +D Sbjct: 259 RAKLLDVDLTLRDLMELQVGDIIPVD 284 >gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] Length = 325 Score = 37.1 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQK 120 D +M PV M + G+ + L+++ GD++ LD+ + + I+ Sbjct: 250 DRLMETPVDMNVTFGTTQITGRQLLDMKVGDILMLDQDEDDMLSGRIHGIL 300 >gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] Length = 319 Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I VK++ IL M + +L NL G VI L V + N+Q + ++ + Sbjct: 236 IQRTEVKLEAILEEREMSLGDLANLRVGQVIELQATARSPVTLACNDQPVFTCQL---GQ 292 Query: 132 DDTHFGVRVIEILNAQ 147 + + +++ E+++ + Sbjct: 293 LNGSYTLQIDELIHEE 308 >gi|291278835|ref|YP_003495670.1| flagellar motor switch protein FliM [Deferribacter desulfuricans SSM1] gi|290753537|dbj|BAI79914.1| flagellar motor switch protein FliM [Deferribacter desulfuricans SSM1] Length = 333 Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 26/48 (54%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 L+ +I V ++ +LG + +++L GD I L+K+ + +NN Sbjct: 255 LLEDIFVDVEAVLGENIFTVDEILSLKAGDTILLNKKSTHPAVLILNN 302 >gi|121533750|ref|ZP_01665577.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans Nor1] gi|121307741|gb|EAX48656.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans Nor1] Length = 334 Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 25/84 (29%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + V + + LG + + +L++L+ GDV+ L+ R GE++++ Sbjct: 257 LQRTSVPVIVELGRATVTVQDLLDLAVGDVLQLESRFD--------------GELSVIIG 302 Query: 132 DDTHF-----------GVRVIEIL 144 F V++ E++ Sbjct: 303 QREKFKCKPGLVGGKVAVQITEVM 326 >gi|225569967|ref|ZP_03778992.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM 15053] gi|225161437|gb|EEG74056.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM 15053] Length = 336 Score = 37.1 bits (85), Expect = 0.78, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 ++++ L + + + L GDVI L+K V + + Q +G++ + + Sbjct: 264 MEIKAELAEAQLSMKEVCGLKVGDVIDLNKSRESDVVLYVEEQPWFRGKL---GAHNKNA 320 Query: 137 GVRVIEILNAQ 147 V++ + + + Sbjct: 321 AVKIKQCIQEE 331 >gi|330502773|ref|YP_004379642.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01] gi|328917059|gb|AEB57890.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01] Length = 323 Score = 37.1 bits (85), Expect = 0.79, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + + SD ++ E+ + I+++ V + + +++ +++++ GDVI ++ Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVE- 285 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + E+V + N K + + ++V+E + Q Sbjct: 286 -LPENVVMRANGVPTFK---VKLGAHKGNLALQVLEPIERQ 322 >gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] Length = 336 Score = 37.1 bits (85), Expect = 0.82, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 7 KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPI-----SSDS 58 ++ Y++ + + +I P + T+ S ++ + ++ EPI S+ Sbjct: 176 ELEYVRSEMNSQFANIATPSEIVVSTSFSLELGGAQAEMHICFPYSMVEPIRDLLYSTMQ 235 Query: 59 NNILEKSTDNFDLIMN----IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++ L + L+ V++ LG+ + + ++VN+ GDVI L +V E + Sbjct: 236 SDHLTQDRRWITLLSRQLQTAEVELTCNLGTARVTLRDIVNMRVGDVIPL--QVSELLQA 293 Query: 115 TINNQKI 121 T++ + Sbjct: 294 TVDGVPV 300 >gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4] gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4] Length = 327 Score = 37.1 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 57 DSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 S +T N + +PV++ +++G + + ++L GDV+ LD+R GE +D+ Sbjct: 237 PSEPPDASATRNLRYWLEKVPVEVSVVVGETRLSVQEFLDLEVGDVLVLDRRFGEDLDVY 296 Query: 116 I 116 + Sbjct: 297 V 297 >gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] Length = 367 Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LI V + ILG + ++ +NL +GD++ LD+ + +TI+ + E+ + E Sbjct: 253 LIGRAEVLYEAILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTIDKK-----EVFLAE 307 Query: 131 EDDTHF--GVRVIEILNA 146 F +R+ E++ + Sbjct: 308 VGLHRFRKSIRIEELIRS 325 >gi|114332022|ref|YP_748244.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91] gi|114309036|gb|ABI60279.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91] Length = 330 Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 +++ LG + + ++N+ +GDVI LD + ++V N I Sbjct: 261 EIEIIANLGHTRVTLHQILNMQEGDVIALD--IPDTVVAMANGVPI 304 >gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 125 Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 82 ILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +L + ++ L + + +++L V +V+I N + GE+ M + GV + Sbjct: 1 VLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDT---LGVEIH 57 Query: 142 EILNA 146 E L+ Sbjct: 58 EWLSE 62 >gi|114320135|ref|YP_741818.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii MLHE-1] gi|114226529|gb|ABI56328.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii MLHE-1] Length = 395 Score = 37.1 bits (85), Expect = 0.87, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + + SD N + E+ T + M V++ +L + + +++N+ GD+I ++ + Sbjct: 229 LDAGVQSDRNEVDERWTRSLREEMKFAEVELSSVLTEVEVSLRDVMNMKPGDIIPVE--L 286 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 E+V + + + +G + +++ E + + Sbjct: 287 PEAVKVYAEDMPVFRGR---YGVRHGNTAIKITERIQPR 322 >gi|118475490|ref|YP_892646.1| flagellar motor switch protein FliM [Campylobacter fetus subsp. fetus 82-40] gi|118414716|gb|ABK83136.1| flagellar motor switch protein FliM [Campylobacter fetus subsp. fetus 82-40] Length = 363 Score = 37.1 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 LI V + ILG + ++ +NL +GD++ LDK + + I+ + Sbjct: 254 LIGRAEVLYEAILGRTVISVNEFLNLQEGDILRLDKSADDKAIVCIDKK 302 >gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36] gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36] Length = 350 Score = 37.1 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 50 ISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + + SD + E+ + + I+++PV++ L + I ++ L GD+I ++ Sbjct: 229 LDAGVQSDKEDTDERWSSALQEEILDVPVELSTKLLETELTIGQIMELRVGDIIPIE 285 >gi|238787476|ref|ZP_04631274.1| Type III secretion system apparatus protein [Yersinia frederiksenii ATCC 33641] gi|238724263|gb|EEQ15905.1| Type III secretion system apparatus protein [Yersinia frederiksenii ATCC 33641] Length = 307 Score = 37.1 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 9/63 (14%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITINNQKIAK-------GE 125 ++P + + +G + + + L+ G + + GE V+I ++ Q + GE Sbjct: 236 DLPQTLVMEIGRLTLPLREIKQLAVGQTLACQTRCYGE-VNIRLHGQPVGSGSLLSCDGE 294 Query: 126 ITI 128 + + Sbjct: 295 LVV 297 >gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila] Length = 356 Score = 37.1 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V+ P + E + + D S+ +D + S D IM++ V++ Sbjct: 203 IELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTD----VRWSKALRDEIMDVKVEL 258 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 + L + + L+ L GD+I ++ Sbjct: 259 RAKLLETDLTLRELMELRPGDIIPVE 284 >gi|333017444|gb|EGK36760.1| surface presentation of antigens family protein [Shigella flexneri K-227] Length = 102 Score = 37.1 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +I VK+ IL M I+ L + ++ + + V+I +N + GE+ +E+ Sbjct: 32 DINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELVSIEDG- 90 Query: 134 THFGVRVIE 142 +G+ + Sbjct: 91 --YGIEISS 97 >gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] Length = 357 Score = 37.1 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129 D IM++PV + +L + + +++ + GD+I ++ E + + I + +G++ Sbjct: 248 DEIMDVPVDLSTMLLEQELTLRDIMEMKAGDIIPVEMP--EHLLVRIEDLPTFRGKL--- 302 Query: 130 EEDDTHFGVRVIE 142 + VR+ E Sbjct: 303 GRKGDNVAVRIEE 315 >gi|218887526|ref|YP_002436847.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758480|gb|ACL09379.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 409 Score = 37.1 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V + L M + +L L+ G L V +T+ + + G + + Sbjct: 337 VTVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLV---DLGGTL 393 Query: 137 GVRV 140 GV+V Sbjct: 394 GVQV 397 >gi|163801852|ref|ZP_02195749.1| flagellar motor switch protein M [Vibrio sp. AND4] gi|159174360|gb|EDP59164.1| flagellar motor switch protein M [Vibrio sp. AND4] Length = 348 Score = 37.1 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S+ + IM+ PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L+ L GDVI +D E+ + I + + M + V+ Sbjct: 260 RVNLLEKDISLRDLMELQPGDVIPIDMP--ENATMFIEDLPTYR---VKMGRSEDKLAVQ 314 Query: 140 VIE 142 V E Sbjct: 315 VSE 317 >gi|315453793|ref|YP_004074063.1| flagellar motor switch protein [Helicobacter felis ATCC 49179] gi|315132845|emb|CBY83473.1| flagellar motor switch protein [Helicobacter felis ATCC 49179] Length = 353 Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 34/64 (53%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 +++++ ++ + L+ V + LGS + + +++L GD I L+K ++V + Sbjct: 238 TETSSKKSRNKELQALVGGASVDVSAFLGSVRLTLKEVLDLVVGDTIRLNKVANDTVVVN 297 Query: 116 INNQ 119 I+ + Sbjct: 298 IDKK 301 >gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 325 Score = 36.8 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 +++IP+KM L + +S L+ L +GDV + ++G+ V++ ++ + GE M E Sbjct: 256 VLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPI--QIGDGVEVLMDEHRFYYGE---MGE 310 Query: 132 DDTHFGVRVIE 142 + + Sbjct: 311 VGGQSAINLTS 321 >gi|146307837|ref|YP_001188302.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp] gi|145576038|gb|ABP85570.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp] Length = 323 Score = 36.8 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + + SD ++ E+ + I+++ V + + +++ +++++ GDVI ++ Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVE- 285 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + E+V + N K + + ++V+E + Q Sbjct: 286 -LPENVIMRANGVPTFK---VKLGAHKGNLALQVLEPIERQ 322 >gi|266621918|ref|ZP_06114853.1| putative flagellar motor switch protein FliM [Clostridium hathewayi DSM 13479] gi|288866391|gb|EFC98689.1| putative flagellar motor switch protein FliM [Clostridium hathewayi DSM 13479] Length = 295 Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 27/47 (57%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 ++ V+++ I + +++ L GDV+ L+K+V S+DI + + Sbjct: 226 LLESEVELRAIFHEFSLDAQDILQLQPGDVVPLNKKVDSSIDIYVED 272 >gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7] Length = 322 Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 48/100 (48%), Gaps = 8/100 (8%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + + + + +++++ GDVI ++ +G+S+ + N Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE--LGDSLVLRANG 296 >gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] Length = 319 Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 I VK++ IL M + L NL G VI L V + N+Q I ++ + Sbjct: 236 IQRTEVKLEAILEEREMHLGELSNLKVGQVIELQATARSPVTLACNDQPIFTCQL---GQ 292 Query: 132 DDTHFGVRVIEILNAQ 147 D + +++ E+++ + Sbjct: 293 LDGSYTLQIEELIHEE 308 >gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1] gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1] Length = 349 Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S+ + IM++PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDVPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 ++ L + + +L+ L GD+I +D Sbjct: 260 RVNLLEKDVSLRDLMELQAGDIIPID 285 >gi|34498061|ref|NP_902276.1| translocation protein in type III secretion [Chromobacterium violaceum ATCC 12472] gi|34103916|gb|AAQ60276.1| translocation protein in type III secretion [Chromobacterium violaceum ATCC 12472] Length = 290 Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 + + + + + + + + L NL G +++ V + ++ IA+G + + Sbjct: 221 LGDAMITVTVEVAKMELPLHQLGNLQPGTLLSSAVSSDGLVTLKAGSRPIARGTLL---D 277 Query: 132 DDTHFGVRV 140 D+ VR+ Sbjct: 278 IDSRLAVRI 286 >gi|300871253|ref|YP_003786126.1| flagellar motor switch protein FliM [Brachyspira pilosicoli 95/1000] gi|300688954|gb|ADK31625.1| flagellar motor switch protein, FliM [Brachyspira pilosicoli 95/1000] Length = 343 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL-DKRVGESV 112 + + NI V+ LGS + +S+++NL KGDV+ + ++ + V Sbjct: 255 EKLQNIYVETSAELGSMQLPLSDILNLQKGDVVKFTETKITDPV 298 >gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC 43644] Length = 712 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 19 SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPIS-SDSNNILEKSTDNFDLIMNIPV 77 + N + P ++ + +++N++ + + I + + F+LI + V Sbjct: 113 PQALPNAAAENTPPLPEEVADPKMSAKELENLTPYTNIPNPRPITGQIAELFELIQDPSV 172 Query: 78 KMQIILGSCC-MQISN 92 ++ +++G +Q+ Sbjct: 173 ELSVVVGRGKVIQLRE 188 >gi|94968664|ref|YP_590712.1| flagellar motor switch protein FliM [Candidatus Koribacter versatilis Ellin345] gi|94550714|gb|ABF40638.1| flagellar motor switch protein FliM [Candidatus Koribacter versatilis Ellin345] Length = 329 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 25/48 (52%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 ++ P + + L +++ L+ L GD++ L + ++++++ + Sbjct: 250 LLGCPFPVSLGLVDASVRVRELLQLRAGDILPLKRSAESAIELSVGGR 297 >gi|91200230|emb|CAJ73274.1| similar to flagellar motor switch [Candidatus Kuenenia stuttgartiensis] Length = 318 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 ++ + I+ + N E+ + +P+ + ILG+ + + L+NL GDVI+L Sbjct: 221 ATLEAVMGKITEATLNREEEIVIIKQTLNQVPLLVNTILGTTQLSFNELINLRVGDVISL 280 Query: 105 DKRVGESVDITI 116 D ++ + + + I Sbjct: 281 DNKITDHLSLEI 292 >gi|160896094|ref|YP_001561676.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1] gi|160361678|gb|ABX33291.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1] Length = 334 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 V + L + L+ + GD I LD+ E + Sbjct: 257 EVTLVAELARADATVEQLLAMRPGDFIELDR---EPL 290 >gi|17549082|ref|NP_522422.1| Hrp conserved protein HRCQ [Ralstonia solanacearum GMI1000] gi|6066702|emb|CAB58248.1| HrpQ protein [Ralstonia solanacearum] gi|17431333|emb|CAD18012.1| hrp conserved protein hrcq [Ralstonia solanacearum GMI1000] gi|1097281|prf||2113360G hrpQ gene Length = 354 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 22/120 (18%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 PL D + + P + + P+ + +PV + L Sbjct: 249 PLTDDDDAYPHDFAAPRTPAGSSAGQGVPLEQ----------------LEVPVHL--ELA 290 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFGVRVIEI 143 M ++ L L V+TL ++ + SV + + Q + G++ + E G+++ I Sbjct: 291 VMGMPLAELAALQPQHVLTLPVKIRDVSVRLVCHGQTLGHGQLVAVGE---QLGLQIASI 347 >gi|333008532|gb|EGK28001.1| surface presentation of antigens family protein [Shigella flexneri K-218] Length = 102 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 +I VK+ IL M I+ L + ++ + + V+I +N + GE+ +E+ Sbjct: 32 DINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELVSIEDG- 90 Query: 134 THFGVRVIE 142 +G+ + Sbjct: 91 --YGIEISS 97 >gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] Length = 334 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 V + L + L+ + GD I LD+ E + Sbjct: 257 EVTLVAELARADATVEQLLAMRPGDFIELDR---EPL 290 >gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] Length = 349 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + ST + IM++PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVI 102 ++ L + + +L+ L GD+I Sbjct: 260 RVDLLEQDISLRDLMELQPGDII 282 >gi|254469380|ref|ZP_05082785.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062] gi|211961215|gb|EEA96410.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062] Length = 350 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 56/131 (42%), Gaps = 10/131 (7%) Query: 17 GRSMHIDNPLQDTNVSSPTNN--SEMLIQKNDVDNISEPISSD-SNNILEKSTDNFDLIM 73 G+ + +D PL ++ E + N + ++E ++++ + + + D + Sbjct: 216 GQRITVDGPLSRHHLVLVEQGWGCERIESVNGMSELAEQVNAEQTAEAGAEEIGSID-LS 274 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV---GESVDITINNQKIAKGEITIME 130 + V ++ + + I+ L + + G ++ +D V + ++IAKG + ++ Sbjct: 275 QMSVPVRFEVDEREISIAELESWAAGTLVNIDVPALNEETPVYVRAAGKRIAKGHLVQID 334 Query: 131 EDDTHFGVRVI 141 E +R+ Sbjct: 335 E---RVALRIS 342 >gi|330826724|ref|YP_004390027.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans K601] gi|329312096|gb|AEB86511.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans K601] Length = 334 Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 15/70 (21%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE---- 131 V + L + L+ + GD I LD+ E + A E + E Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EP-------RIRASIEGVPVFECQYG 306 Query: 132 -DDTHFGVRV 140 + + +R+ Sbjct: 307 THNAKYAIRI 316 >gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] Length = 334 Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 V + L + L+ + GD I LD+ E + Sbjct: 257 EVTLVAELARADATVEQLLAMRPGDFIELDR---EPL 290 >gi|319764508|ref|YP_004128445.1| flagellar motor switch protein flim [Alicycliphilus denitrificans BC] gi|317119069|gb|ADV01558.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans BC] Length = 334 Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 15/70 (21%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE---- 131 V + L + L+ + GD I LD+ E + A E + E Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELDR---EP-------RIRASIEGVPVFECQYG 306 Query: 132 -DDTHFGVRV 140 + + +R+ Sbjct: 307 THNAKYAIRI 316 >gi|160939629|ref|ZP_02086977.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC BAA-613] gi|158437420|gb|EDP15184.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC BAA-613] Length = 296 Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 12/113 (10%) Query: 7 KISYIKDNLEGR-SMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS 65 ++ + + L R +M + P + S + + +K D D ++LE Sbjct: 172 ELEVVIEKLRARINMVMPAPNVEELTSKFGYSFAVSHKKQDEDKQKSKRHYIEQHLLES- 230 Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 V+++ IL + +++ L+ GDVI L+K+V +V + + + Sbjct: 231 ----------EVELRAILHEFTLDAQDILQLAPGDVIPLNKKVDSAVSLYVED 273 >gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277] gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277] Length = 368 Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LI V + ILG + ++ +NL +GD++ LD+ + +TI+ +++ E+ Sbjct: 254 LIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEV---G 310 Query: 131 EDDTHFGVRVIEILNA 146 +R+ E++ + Sbjct: 311 LHRFRKSIRIEELIRS 326 >gi|268678938|ref|YP_003303369.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum DSM 6946] gi|268616969|gb|ACZ11334.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum DSM 6946] Length = 353 Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 LI V + I+G + + L+ L KGD++ LD+ + + I+ +++ EI Sbjct: 252 LISRAEVFNEAIIGQAELSVGELLELKKGDIVRLDRAADDKAIVMIDKKELFLAEI 307 >gi|46410122|gb|AAS93912.1| RPP13-like protein [Arabidopsis arenosa] Length = 605 Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 20/41 (48%) Query: 95 NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 +L + + L+K E +++ +N+ K + ++++ Sbjct: 233 SLGETSEVELEKMAEEELEVYLNDILQGKKYLVVVDDIWEK 273 >gi|221633527|ref|YP_002522752.1| excinuclease ABC subunit B [Thermomicrobium roseum DSM 5159] gi|221157243|gb|ACM06370.1| excinuclease ABC, B subunit [Thermomicrobium roseum DSM 5159] Length = 668 Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 91 SNLVNLSKGDVITLDKRVGESVDI--------TINNQKIAKGEITIMEEDDTHFGVRV 140 +++ L +G V+ DK + VD+ + A+G++ + F VR+ Sbjct: 155 KSILALRRGQVVRRDKILRHLVDLQYDRNDMTLVRGTFRARGDLIEVFPAYEEFAVRI 212 >gi|224370777|ref|YP_002604941.1| FliM [Desulfobacterium autotrophicum HRM2] gi|223693494|gb|ACN16777.1| FliM [Desulfobacterium autotrophicum HRM2] Length = 326 Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 ++I+ V +++ LG+ + L+ L GDVI LD + + ++ +G Sbjct: 252 EIILESTVNLRVQLGTTEISGERLIYLQPGDVIQLDNDAKDMLTGYVDGLPKVRG 306 >gi|91223552|ref|ZP_01258817.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01] gi|269965696|ref|ZP_06179809.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91191638|gb|EAS77902.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01] gi|269829764|gb|EEZ84000.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 348 Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S+ + IM+ PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L+ L GD+I ++ E + + + + M + V+ Sbjct: 260 RVNLLEKDISLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYR---VKMGRSEDKLAVQ 314 Query: 140 VIE 142 + E Sbjct: 315 ISE 317 >gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] Length = 322 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDLLDVDVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + +++ +++++ GDVI ++ Sbjct: 259 LSATVARRQLRLRDILHMQPGDVIPVE 285 >gi|219566951|dbj|BAH04982.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] Length = 354 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 34/126 (26%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 PL D + + P + + P+ + +PV + L Sbjct: 249 PLTDDDDAYPHDFAAPRTPAGSSAGQGVPLEQ----------------LEVPVHL--ELA 290 Query: 85 SCCMQISNLVNLSKGDVITLDKRVGESV---DITIN----NQKIAKGEITIMEEDDTHFG 137 M ++ L L V+TL V D+T+ Q + G++ + E G Sbjct: 291 VMGMPLAELAALQPQHVLTL------PVKIRDVTVRLVCHGQTLGHGQLVAVGE---QLG 341 Query: 138 VRVIEI 143 +++ I Sbjct: 342 LQIASI 347 >gi|149203625|ref|ZP_01880594.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035] gi|149142742|gb|EDM30784.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035] Length = 334 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 47 VDNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + + + S N ++ N + ++ N PV + ++ + + +++ L GD++ Sbjct: 200 IASPARASSGKIANTKIEAPANLEQVVNNAPVMLDAVMARLRLPLRDILALKPGDLLPFQ 259 Query: 106 KRVGESVDITINNQKIA-KGEITIMEEDDTHFGVRVIEILN 145 + + + Q + +G I E G+R + +++ Sbjct: 260 R------ETLNDTQLVGTRGHIVATAELGQMNGLRALRLIS 294 >gi|255028845|ref|ZP_05300796.1| flagellar motor switch protein [Listeria monocytogenes LO28] Length = 85 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 EP + + S D NI V + + LG M + ++ LS GDV+ ++K Sbjct: 13 EPKETPQEGREKGSIRQVD---NIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEK 64 >gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619] gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619] Length = 322 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVSVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + +++ +++++ GDVI ++ Sbjct: 259 LSATVARRQLKLRDVLHMQPGDVIPVE 285 >gi|225851080|ref|YP_002731314.1| hypothetical protein PERMA_1547 [Persephonella marina EX-H1] gi|225645615|gb|ACO03801.1| hypothetical protein PERMA_1547 [Persephonella marina EX-H1] Length = 106 Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133 NIP+ + I L S + +S++ + + I + ++ + V++ +N + I KG ++ +D Sbjct: 38 NIPLPVVIRLMSRDIPVSDIDRIGETTEILVSEKEEKDVELLVNGEIIGKG---VVFKDS 94 Query: 134 THFGVRVIEI 143 +++ ++ Sbjct: 95 GSLKLKITDL 104 >gi|254228441|ref|ZP_04921867.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|262393595|ref|YP_003285449.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|151939029|gb|EDN57861.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|262337189|gb|ACY50984.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] Length = 348 Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S+ + IM+ PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L+ L GD+I ++ E + + + + M + V+ Sbjct: 260 RVNLLEKDISLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYR---VKMGRSEDKLAVQ 314 Query: 140 VIE 142 + E Sbjct: 315 ISE 317 >gi|94984419|ref|YP_603783.1| hypothetical protein Dgeo_0311 [Deinococcus geothermalis DSM 11300] gi|94554700|gb|ABF44614.1| hypothetical protein Dgeo_0311 [Deinococcus geothermalis DSM 11300] Length = 1063 Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 13/90 (14%) Query: 34 PTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNL 93 P SE+L + DV +++ D + E +T+N P +++ L ++I + Sbjct: 133 PGERSEVLQGRIDVADLAAATPLDLAAVAEMATEN-------PGTIKLPLAGSVIRIRDR 185 Query: 94 VNLSKGDVITLDKRVGESVDITINNQKIAK 123 + + ++ +GE+ D+T+N + + Sbjct: 186 IT------VEVEAPLGETADLTVNGVPVGR 209 >gi|83646773|ref|YP_435208.1| flagellar motor switch protein FliM-like protein [Hahella chejuensis KCTC 2396] gi|83634816|gb|ABC30783.1| flagellar motor switch protein FliM-like protein [Hahella chejuensis KCTC 2396] Length = 252 Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 K+ + L S + I+ + +L GDVI LD ++ E + Sbjct: 187 KLSVRLNSVELTINEVTSLQAGDVIKLDHKLTEPALVF 224 >gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] Length = 322 Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 M + +++ +++++ GDVI ++ Sbjct: 259 MTATVARRQLKLRDILHMQPGDVIPVE 285 >gi|238796112|ref|ZP_04639623.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC 43969] gi|238720057|gb|EEQ11862.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC 43969] Length = 303 Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 +D E + + E FD + + VK+ +LG + + L ++ G V L Sbjct: 193 DDTPEAEETLPRLDEVLPENVPRPFD-VAGVTVKLTFVLGHSDIPLQELAHIQPGAVYEL 251 Query: 105 DKRVGESVDITIN 117 V I N Sbjct: 252 GADKDREVKIYAN 264 >gi|149179192|ref|ZP_01857759.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797] gi|148841965|gb|EDL56361.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797] Length = 349 Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQ-------IILGSCCMQISNLV 94 I N ++ +S ++SD+ + +K + + +N+ + + L + + ++ Sbjct: 224 IPFNTIEPLSNKLTSDTWSAYKKKSPDLRQQLNLEASVSKSKIAMRVELDNSKLTAGEVL 283 Query: 95 NLSKGDVITLDKRVGESVDITINNQKI 121 NL+ GDVI +K +S+ + + + Sbjct: 284 NLAVGDVIMCNKGSAQSLTVELEGSPV 310 >gi|167034915|ref|YP_001670146.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1] gi|166861403|gb|ABY99810.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1] Length = 322 Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 M + +++ +++++ GDVI ++ Sbjct: 259 MTATVARRQLKLRDILHMQPGDVIPVE 285 >gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida] gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1] Length = 322 Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 M + +++ +++++ GDVI ++ Sbjct: 259 MTATVARRQLKLRDILHMQPGDVIPVE 285 >gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92] gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92] Length = 366 Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 LI V + ILG + +S ++L +GD++ LD+ + + I+ +++ E+ Sbjct: 255 LIGRAEVLYEAILGKAIVSVSEFLDLKEGDIVRLDRSADDKAIVCIDKKEVFLAEV 310 >gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY] gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY] Length = 334 Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 15/72 (20%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE---- 131 V + L + L+ + GD I L++ E + A E + E Sbjct: 257 EVTLVAELARADATVEQLLAMKPGDFIELER---EP-------RIRASIEGVPVFECQYG 306 Query: 132 -DDTHFGVRVIE 142 ++ + +R+ E Sbjct: 307 THNSKYAIRIEE 318 >gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 456 Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 53/141 (37%), Gaps = 7/141 (4%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFD 70 ++DN++ + + + S L + + +S + + N ++ + Sbjct: 184 LRDNMQHLEERVRERTSELQAAREMAESANLAKSEFLATMSHELRTPLNAVIGFTDVLLS 243 Query: 71 LIMNIPVKMQII-LGSCCMQISNLVNLSKG----DVITLDKRVGESVDITINNQKIAKGE 125 I +Q LG +L++L I D+ E D+ I +++A G Sbjct: 244 RIYGEVTDIQAEFLGYVLQSSRHLLSLINDILDLSKIEADRMELEPSDVDI--RQLASGS 301 Query: 126 ITIMEEDDTHFGVRVIEILNA 146 + +++E +R+ E + Sbjct: 302 LVMVKERAQQHRIRLTEEVAP 322 >gi|260222423|emb|CBA31972.1| Flagellar motor switch protein fliM [Curvibacter putative symbiont of Hydra magnipapillata] Length = 334 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 17/146 (11%) Query: 7 KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE 63 ++ Y + ++ + +I P + T+ + I + + EPI + + Sbjct: 176 ELEYQRSEMQPQFANIATPSEIVISTSFQLEIGDITGAIHFSFPYSTLEPIRDVLYSSTQ 235 Query: 64 KSTDNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + D I V + L + L+ + KGD I LD+ + Sbjct: 236 GDSIEVDRRWVNVLTREIQAAEVTIVAELARADATVEQLLGMKKGDFIELDRAPR--IQA 293 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRV 140 T++ I + + ++ + +R+ Sbjct: 294 TVDGVPIFECQ---YGTHNSKYAIRI 316 >gi|148554378|ref|YP_001261960.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1] gi|148499568|gb|ABQ67822.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1] Length = 331 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMN-IPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D I+ + ++ + ++ + + ++ +L M ++ L+ L GDVI ++ Sbjct: 234 DQIAARTQAGADGDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDVIPVN- 292 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 + ++V + + N++ A+G + E D + + Sbjct: 293 -LSQTVPLLVGNRRFAEG---TIGEQDGRAALMI 322 >gi|32474773|ref|NP_867767.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1] gi|32445313|emb|CAD75314.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1] Length = 428 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++ + K D+ D PV + + L ++ S+L++L+ GD+IT ++ ++++ Sbjct: 281 TNPTPQSRRKIADSIDA---APVDVVVTLARSKIRTSDLLDLNVGDIITTEQAASSALEL 337 Query: 115 TI 116 ++ Sbjct: 338 SV 339 >gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] Length = 334 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIMEEDDT 134 V + L + L+ + GD I LD+ E + +I I + + ++ Sbjct: 257 EVTLVAELAQADATVEQLLAMKPGDFIELDR---EPRIRASIGGVPIFECQ---YGTHNS 310 Query: 135 HFGVRVIE 142 + +R+ E Sbjct: 311 KYAIRIEE 318 >gi|225568550|ref|ZP_03777575.1| hypothetical protein CLOHYLEM_04627 [Clostridium hylemonae DSM 15053] gi|225162778|gb|EEG75397.1| hypothetical protein CLOHYLEM_04627 [Clostridium hylemonae DSM 15053] Length = 736 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Query: 90 ISNLVNLSKGDVITLDK---RVGESVDITINNQKIAKGEITIMEEDDTHF 136 + ++++ V+ L K + GES DI +N KI +GE +++ F Sbjct: 462 LKDIIDAHCFSVVMLTKIFRQAGES-DIVVNAHKINRGEEVVLDNKSRDF 510 >gi|327540553|gb|EGF27130.1| flagellar motor switch protein fliM [Rhodopirellula baltica WH47] Length = 428 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 55 SSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 ++ + K D+ D PV + + L ++ S+L++L+ GD+IT ++ ++++ Sbjct: 281 TNPTPQSRRKIADSIDA---APVDVVVTLARSKIRTSDLLDLNVGDIITTEQAASSALEL 337 Query: 115 TI 116 ++ Sbjct: 338 SV 339 >gi|190574232|ref|YP_001972077.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia K279a] gi|190012154|emb|CAQ45777.1| putative flagellar motor switch protein FliM [Stenotrophomonas maltophilia K279a] Length = 334 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + I SD N+ E +NI V + +L S M + +L L GD++ ++ Sbjct: 228 LDAGIQSDRNDRDESWGKTLREQLNIAEVTLSSVLASKRMTLRDLTQLKVGDILPIELSP 287 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 V + N + GE I + V++ Sbjct: 288 QVPV--CVENIPVFTGEFGIANGMN---AVKIT 315 >gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] Length = 339 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 3/87 (3%) Query: 56 SDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDIT 115 D N + + + I + ++ +G + + ++ NL GDVI L V + Sbjct: 244 GDEANSQDNKQEIMNSIKASDLLVRAQVGESMITLDDVYNLHVGDVINLGTPKDSDVQLY 303 Query: 116 INNQKIAKGEITIMEEDDTHFGVRVIE 142 + Q +G++ + + VR+ + Sbjct: 304 VEGQPWFRGQLGV---HKRNVAVRIED 327 >gi|1066861|gb|AAB81317.1| Complete gene sequence under accession number M24465 [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 32 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 3/26 (11%) Query: 121 IAKGEITIMEEDDTHFGVRVIEILNA 146 IA+GE+ ++ + +GVR+ +I+ Sbjct: 1 IAQGEVVVVAD---KYGVRITDIITP 23 >gi|94986980|ref|YP_594913.1| putative translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] gi|94731229|emb|CAJ54592.1| putative translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] Length = 360 Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 E + N + + V + +G +S L + +G TL+ + V ++ ++ I Sbjct: 276 SESTIRNKSIEHPLEVPISFEIGKYNTTLSELEHFIEGHTFTLELDIHSPVILSFEDKTI 335 Query: 122 AKGEITIMEEDDTHFGVRVIE 142 G ++ + G+R++E Sbjct: 336 GTG---VLMNFNGVIGIRILE 353 >gi|254523832|ref|ZP_05135887.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14] gi|219721423|gb|EED39948.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14] Length = 334 Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 10/95 (10%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDV--ITLDK 106 + I SD N+ E +NI V + +L S M + +L L GDV I L+ Sbjct: 228 LDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLTRLKVGDVLPIELNP 287 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + V + + N + GE I + V++ Sbjct: 288 Q----VPLCVENIPVFTGEFGIANGMN---AVKIT 315 >gi|153215435|ref|ZP_01950019.1| conserved domain protein [Vibrio cholerae 1587] gi|153827945|ref|ZP_01980612.1| conserved domain protein [Vibrio cholerae 623-39] gi|124114729|gb|EAY33549.1| conserved domain protein [Vibrio cholerae 1587] gi|148876526|gb|EDL74661.1| conserved domain protein [Vibrio cholerae 623-39] Length = 71 Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 + + + +++ C M + L++L KG+++ ++ V +V + N+ IA G + +++ Sbjct: 1 MKIAIDVVIAHCSMTLDELLHLQKGNMVKVEDFVQSAVMLKSGNELIATGTLIKIDD--- 57 Query: 135 HFGVRVIEI 143 F V + + Sbjct: 58 QFAVSIDNV 66 >gi|238897369|ref|YP_002923046.1| type III secretion system protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465124|gb|ACQ66898.1| type III secretion system protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 320 Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 6/109 (5%) Query: 33 SPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISN 92 S T +++ + ++ + S D E+ + + + +G + I + Sbjct: 210 SDTESNDFSYKAPSDEDAPDASSPDVIPEFEEEPKKIS-LNEFTQTLVMEIGRINIPIQD 268 Query: 93 LVNLSKGDVITL-DKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 L L G + GE V I +N +KI G + D VR+ Sbjct: 269 LNQLFVGKTLNCKTSFYGE-VMIRLNGRKIGSGNLL---NCDGELIVRI 313 >gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas stutzeri DSM 4166] Length = 279 Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 12/106 (11%) Query: 46 DVDNISEPISSDSNNILEKSTDN-FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITL 104 D + + E S + + + N D I ++PV++ ++ + M ++ ++ L D++ L Sbjct: 182 DTELVDELTSRLAGPPVPRLPGNPIDHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML 241 Query: 105 DKRVGESVD---ITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 +D + IN QK+ +G + E+D + +E +N Q Sbjct: 242 -----RPLDRYEVRINQQKLFRG---TIFEEDGALFLTSLESVNPQ 279 >gi|254506968|ref|ZP_05119107.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16] gi|219550253|gb|EED27239.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16] Length = 349 Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + ST + IM++PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVI 102 ++ L + + +L+ L GD+I Sbjct: 260 RVNLLEQDISLRDLMELRPGDII 282 >gi|104782811|ref|YP_609309.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48] gi|95111798|emb|CAK16522.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48] Length = 322 Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDVLDVAVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 M + +++ +++++ GDVI ++ Sbjct: 259 MSATVARRQLKLRDILHMQPGDVIPVE 285 >gi|111225322|ref|YP_716116.1| ATP-dependent DNA helicase [Frankia alni ACN14a] gi|111152854|emb|CAJ64601.1| ATP-dependent DNA helicase [Frankia alni ACN14a] Length = 1291 Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Query: 25 PLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILG 84 P V+S E++ + V + S+ ++S +++ + ++ ++PV +G Sbjct: 387 PATAGEVTSLVPLPEVVGEILGVGSKSKAVASQVTSLVSRLGPELGILGDVPVSAIAEVG 446 Query: 85 SCCMQISNLVNLSKGDVITLDKRVG 109 S + + + L +G+VI ++ G Sbjct: 447 SAEL-VEAISRLRRGEVI---RQAG 467 >gi|306820127|ref|ZP_07453775.1| flagellar motor switch protein FliM [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551905|gb|EFM39848.1| flagellar motor switch protein FliM [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 332 Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 63 EKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 EK N + + ++ I+G + + + + + GDVI L+K+V E +++ + + Sbjct: 244 EKGKKNLESNVKKAKLEAVAIIGDTFITVEDFIFMQVGDVIKLNKKVDEELELKVAGK 301 >gi|114706761|ref|ZP_01439661.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506] gi|114537709|gb|EAU40833.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506] Length = 321 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 6/99 (6%) Query: 48 DNISEPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 + + P S E NF+ + ++ +L + ++ + + G + LD Sbjct: 218 EPLPLPQPSPDETWSEAMVRNFEKSG---LHLEAVLARKQVPLAEVAHFRVGQTLALDVM 274 Query: 108 VGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 V E + + + I K ++ + R E ++ Sbjct: 275 VSELITLECEGKPIFKSQV---GFSRGSYVARFEEAVDP 310 >gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] Length = 349 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + ST + IM++PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVI 102 ++ L + + +L+ L GD+I Sbjct: 260 RVNLLEQDISLRDLMELQPGDII 282 >gi|327441044|dbj|BAK17409.1| flagellar motor switch protein [Solibacillus silvestris StLB046] Length = 331 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 54 ISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 + +++ I + + + + + + LGS + I + + ++ GDVI L +++ + Sbjct: 236 MQTNTKEISPEQSKMLESRVKQAKLPIIAELGSSDITIEDFLTMAVGDVIPLKQKIENPL 295 Query: 113 DITI 116 + + Sbjct: 296 TLKV 299 >gi|260776477|ref|ZP_05885372.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC BAA-450] gi|260607700|gb|EEX33965.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC BAA-450] Length = 351 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + ST + IM++PV Sbjct: 206 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 261 Query: 80 QIILGSCCMQISNLVNLSKGDVI 102 ++ L + + +L+ L GD+I Sbjct: 262 RVNLLEQDISLRDLMELQPGDII 284 >gi|229591843|ref|YP_002873962.1| flagellar motor switch protein FliM [Pseudomonas fluorescens SBW25] gi|229363709|emb|CAY51095.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25] Length = 322 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPVREMLDAG-----FQSDLDDQDERWVKALREDLLDVDVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + +++ +++++ GD+I ++ Sbjct: 259 LSATVARRQLRLRDILHMQPGDIIPVE 285 >gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] Length = 334 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 19/30 (63%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLD 105 V++ LG+ + + ++VNL GDVI LD Sbjct: 257 EVEIVADLGTAEVSLRDIVNLKVGDVIPLD 286 >gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] Length = 326 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 11/124 (8%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D I SD +++ E+ D + V+ Sbjct: 207 IELDGGGGDLHVTMPYSMIEPMRELLDAG-----IQSDRSDVDERWIRALRDEVKAAEVE 261 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + +L + + +++ L GD+I +D + E V + + +G+ + + + + Sbjct: 262 LSSMLTETTLSLEDVMRLKPGDIIPID--LPEQVLLRAEGIPVLRGKFGVSDGYN---AI 316 Query: 139 RVIE 142 +V E Sbjct: 317 KVTE 320 >gi|91776323|ref|YP_546079.1| flagellar motor switch protein FliM [Methylobacillus flagellatus KT] gi|91710310|gb|ABE50238.1| flagellar motor switch protein FliM [Methylobacillus flagellatus KT] Length = 335 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 21/154 (13%) Query: 7 KISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVD-----NISEPISSDSNNI 61 + YI+ + + +I P + V S T N E+ ++ ++ EPI + Sbjct: 175 EFEYIRSEMNTQFANIATP--NEVVVSTTFNIELGSASGEIHFCFPYSMIEPIRDLLTSP 232 Query: 62 LEKSTDNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 L+ D I + V + L M + +++N+ GDVI L + E + Sbjct: 233 LQGEALGVDKRWVRLMTQQIQSAEVMLIADLAKAEMTLGDILNMKVGDVIPL--SISEEI 290 Query: 113 DITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 + ++N + + + + + +RV ++L + Sbjct: 291 EAKVDNVPVMQCK---YGVFNGQYALRVEKLLRS 321 >gi|70729040|ref|YP_258774.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5] gi|68343339|gb|AAY90945.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5] Length = 322 Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWSKALREDVLDVAVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + +++ +++++ GDVI ++ Sbjct: 259 LSATVARRQLRLRDILHMQPGDVIPVE 285 >gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] Length = 331 Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V + L + L+ + GD I L+++ ++ TI+ + + + + + Sbjct: 258 VTLVAELARANTTVEELLAMKVGDFIELERQPR--IEATISGVPVFECQ---YGTHNAKY 312 Query: 137 GVRV 140 +R+ Sbjct: 313 AIRI 316 >gi|114764585|ref|ZP_01443789.1| hypothetical protein 1100011001360_R2601_26946 [Pelagibaca bermudensis HTCC2601] gi|114542961|gb|EAU45981.1| hypothetical protein R2601_26946 [Roseovarius sp. HTCC2601] Length = 175 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 11/110 (10%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS---TDNFDLIM 73 ++ P + N P + D + P + ++L T N Sbjct: 4 KSKINEPGPKAEDNAPKPAAEA-PRAPSGDFKPSTPPKAKPPASVLSSDLHITGNLKTTG 62 Query: 74 NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAK 123 +I V+ + G ++L+ + + I + D+ IN + + + Sbjct: 63 DIQVEGTVE-GDIR---AHLLTIGESATIKGEVVAD---DVVINGRIVGR 105 >gi|51246520|ref|YP_066404.1| flagellar motor switch protein (FliM) [Desulfotalea psychrophila LSv54] gi|50877557|emb|CAG37397.1| related to flagellar motor switch protein (FliM) [Desulfotalea psychrophila LSv54] Length = 323 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 78 KMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFG 137 + G + + +++ L GD++ +D + + + + N G I + Sbjct: 260 DITAQPGRLELSVGDILGLQVGDILEVDYDPSKPLKVLVENSPKFYG---IPGTHNGKKA 316 Query: 138 VRVIE 142 + + E Sbjct: 317 ISLTE 321 >gi|85711955|ref|ZP_01043009.1| hypothetical protein OS145_12679 [Idiomarina baltica OS145] gi|85694141|gb|EAQ32085.1| hypothetical protein OS145_12679 [Idiomarina baltica OS145] Length = 314 Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 9/80 (11%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG----ESVDITINNQKIAKGEI 126 ++ ++ V I G+ + + L+ + V K ++ ++N I GE Sbjct: 37 MLGDVEVT-AISDGTTELPVHQLLQMDADKVRE--KLAEFYRQSPLETSVNAYLINDGES 93 Query: 127 TIMEED--DTHFGVRVIEIL 144 I+ + + FG + ++ Sbjct: 94 LILIDTGAGSMFGASLGNLV 113 >gi|300693807|ref|YP_003749780.1| type III secretion system apparatus protein hrcq [Ralstonia solanacearum PSI07] gi|299075844|emb|CBJ35153.1| type III secretion system apparatus protein HrcQ [Ralstonia solanacearum PSI07] Length = 355 Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITINNQKIAKGEITIME 130 + + V + + L M +S L L V+TL K +V + + Q + G++ + Sbjct: 279 LEQLEVPVHLELAVMGMPLSELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338 Query: 131 EDDTHFGVRVIEI 143 E G+++ I Sbjct: 339 E---QLGLQIASI 348 >gi|27365287|ref|NP_760815.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6] gi|37680658|ref|NP_935267.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016] gi|320155671|ref|YP_004188050.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O] gi|27361434|gb|AAO10342.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6] gi|37199407|dbj|BAC95238.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016] gi|319930983|gb|ADV85847.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O] Length = 347 Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 9/123 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S+ + IM+ PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L+ L GDVI ++ +V + + + M + + V+ Sbjct: 260 RVNLLEKDISLRDLMELRPGDVIPIE-MPKHAV-MFVEELPTYR---VKMGQSNEKLAVQ 314 Query: 140 VIE 142 + E Sbjct: 315 ISE 317 >gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium HP15] Length = 332 Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 6/96 (6%) Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D + + SD +++ E+ + + I + V + + + + ++ + GD+I ++ Sbjct: 225 DVLDAGVQSDIDDVDERWVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVE- 283 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 + E + +T N I K + D +R+ E Sbjct: 284 -IPEHLTVTANGIPIYKA---TLGTRDGKLALRIHE 315 >gi|260767962|ref|ZP_05876896.1| putative flagellar motor switch protein [Vibrio furnissii CIP 102972] gi|260615992|gb|EEX41177.1| putative flagellar motor switch protein [Vibrio furnissii CIP 102972] Length = 256 Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 22/39 (56%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 PV++ ++L M +S+++ L+ D++ +D V I Sbjct: 189 PVRLNVLLSKKTMPLSDVLRLTPNDILPIDLLSTVPVSI 227 >gi|149914719|ref|ZP_01903249.1| hypothetical protein RAZWK3B_14039 [Roseobacter sp. AzwK-3b] gi|149811512|gb|EDM71347.1| hypothetical protein RAZWK3B_14039 [Roseobacter sp. AzwK-3b] Length = 183 Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 18/120 (15%) Query: 9 SYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKS--- 65 + K + + ++P Q S+P +++ ++ S P + ++L Sbjct: 1 MFSKSKINDPAPKAEDPRQ---TSTPDRSADTSYSGSEFKA-SAPKAKPPASVLSADLHI 56 Query: 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV--DITINNQKIAK 123 T N +I V+ + G ++L+ + +G I GE V D+ IN + + + Sbjct: 57 TGNLKTTGDIQVEGTVE-GDIR---AHLLTVGEGATIK-----GEIVADDVVINGRIVGR 107 >gi|157164910|ref|YP_001467212.1| flagellar motor switch protein FliM [Campylobacter concisus 13826] gi|112799933|gb|EAT97277.1| flagellar motor switch protein FliM [Campylobacter concisus 13826] Length = 367 Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEI 126 LI V + ILG + ++ +NL +GD++ LD+ + + I+ +++ E+ Sbjct: 255 LIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRGADDKAIVCIDKKEVFLAEV 310 >gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] Length = 315 Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 1/75 (1%) Query: 48 DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 +++P + + + + I + V + +L + + ++ G VI L Sbjct: 204 AQLAQPFLGGRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGM 263 Query: 107 RVGESVDITINNQKI 121 V V +N Q + Sbjct: 264 TVDTPVVGMVNAQPM 278 >gi|110680043|ref|YP_683050.1| hypothetical protein RD1_2838 [Roseobacter denitrificans OCh 114] gi|109456159|gb|ABG32364.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 382 Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 48 DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + E SS+S S + +M + ++ +L + +S + L G +++ Sbjct: 191 KAVPERQSSESETADPGSPATLEKSVMAVTAELSAVLCRVRVSLSEMSRLRPGHTLSIPA 250 Query: 107 RVGESVDIT-INNQKIAKG 124 ESV++ I ++A+G Sbjct: 251 NAFESVELLSIEGARVARG 269 >gi|116624443|ref|YP_826599.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus Ellin6076] gi|116227605|gb|ABJ86314.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus Ellin6076] Length = 293 Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 23/41 (56%) Query: 87 CMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127 + + +L++L +G+++T D V +++ +N G++ Sbjct: 217 TLSVGDLLSLREGNLLTFDFPVERPIELVVNGACKFTGQVV 257 >gi|57241942|ref|ZP_00369882.1| flagellar motor switch protein FliM [Campylobacter upsaliensis RM3195] gi|315638332|ref|ZP_07893512.1| flagellar motor switch protein FliM [Campylobacter upsaliensis JV21] gi|57017134|gb|EAL53915.1| flagellar motor switch protein FliM [Campylobacter upsaliensis RM3195] gi|315481599|gb|EFU72223.1| flagellar motor switch protein FliM [Campylobacter upsaliensis JV21] Length = 360 Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQ 119 LI V + ILG + ++ + L +GD++ LD+ + ++I+ + Sbjct: 254 LIGRAEVVYEAILGKTLINVNEFLELKQGDILRLDREADDKAVVSIDKK 302 >gi|225871935|ref|YP_002753389.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196] gi|225793506|gb|ACO33596.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196] Length = 116 Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 10/114 (8%) Query: 35 TNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNI-------PVKMQIILGSCC 87 TN + L + + P DS E T + L I P++++I L Sbjct: 3 TNTTTALEETTSSTALLAPAQGDSPLEAEAETASLSLRRTIEERVTQAPLRLEIRLPIRG 62 Query: 88 MQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 +++ +++ L KG + E + Q++ E ++++ VRV Sbjct: 63 LRVKDVLALRKGAIFETQWPADEDIPGDCGGQQLVWAEFEVIDK---KLAVRVT 113 >gi|332524239|ref|ZP_08400465.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus JA2] gi|332107574|gb|EGJ08798.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus JA2] Length = 334 Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 12/111 (10%) Query: 7 KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE 63 ++ Y + ++ + +I P + T + ++ + + EPI + ++ Sbjct: 176 ELEYQRSEMQPQFANIATPSEIVVSTAFTLEIGDTSGAVHFCIPYSTLEPIRDVLYSTIQ 235 Query: 64 KSTDNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD 105 + D I V + LG + L++ GD I LD Sbjct: 236 GDSAEPDRRWVNLLKHQIQAAEVDLVAELGHAPATVEQLLSFKPGDFIELD 286 >gi|330880582|gb|EGH14731.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] Length = 242 Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 124 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWINALKEDVLDVNVP 178 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + + + + +++++ GDVI ++ + ES+ + N Sbjct: 179 LTTTIAQRQLPLRDILHMRPGDVIPVE--LSESLVMRANG 216 >gi|21242691|ref|NP_642273.1| flagellar motor switch protein FliM [Xanthomonas axonopodis pv. citri str. 306] gi|294664066|ref|ZP_06729468.1| flagellar motor switch protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21108164|gb|AAM36809.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|292606169|gb|EFF49418.1| flagellar motor switch protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 337 Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V + +L S M + L L GD++ +D + + + + GE + ++ Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312 Query: 136 FGVRVIEI 143 V++ + Sbjct: 313 -AVKITAV 319 >gi|325928696|ref|ZP_08189868.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118] gi|325540928|gb|EGD12498.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118] Length = 337 Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V + +L S M + L L GD++ +D + + + + GE + ++ Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312 Query: 136 FGVRVIEI 143 V++ + Sbjct: 313 -AVKITAV 319 >gi|153834156|ref|ZP_01986823.1| flagellar motor switch protein FliM [Vibrio harveyi HY01] gi|156975423|ref|YP_001446330.1| flagellar motor switch protein FliM [Vibrio harveyi ATCC BAA-1116] gi|148869526|gb|EDL68524.1| flagellar motor switch protein FliM [Vibrio harveyi HY01] gi|156527017|gb|ABU72103.1| hypothetical protein VIBHAR_03154 [Vibrio harveyi ATCC BAA-1116] Length = 348 Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S+ + IM+ PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 ++ L + + +L+ L GDVI ++ Sbjct: 260 RVNLLEKDISLRDLMELQPGDVIPIE 285 >gi|194365650|ref|YP_002028260.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia R551-3] gi|194348454|gb|ACF51577.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia R551-3] Length = 334 Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 50 ISEPISSDSNNILEKSTDNFDLIMNI-PVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + I SD N+ E +NI V + +L S M + +L L GD++ ++ Sbjct: 228 LDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLTQLKVGDILPIELSP 287 Query: 109 GESVDITINNQKIAKGEITIMEEDDTHFGVRVI 141 + + N + GE I + V++ Sbjct: 288 QVPL--CVENIPVFTGEFGIANGMN---AVKIT 315 >gi|300697462|ref|YP_003748123.1| type III secretion system apparatus protein HrcQ [Ralstonia solanacearum CFBP2957] gi|299074186|emb|CBJ53731.1| type III secretion system apparatus protein HrcQ [Ralstonia solanacearum CFBP2957] Length = 355 Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLD-KRVGESVDITINNQKIAKGEITIME 130 + + V + + L M ++ L L V+TL K +V + + Q + G++ + Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338 Query: 131 EDDTHFGVRVIEI 143 E G+++ I Sbjct: 339 E---QLGLQIASI 348 >gi|78047547|ref|YP_363722.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035977|emb|CAJ23668.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 337 Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V + +L S M + L L GD++ +D + + + + GE + ++ Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312 Query: 136 FGVRVIEI 143 V++ + Sbjct: 313 -AVKITAV 319 >gi|171322881|ref|ZP_02911586.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171091755|gb|EDT37285.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 70 Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGE-SVDITINNQKIAKGEITIMEEDDTHFG 137 M + + + + I+ L L G V+ L + V + Q I G + + H G Sbjct: 1 MHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVG---AHLG 57 Query: 138 VRV 140 VR+ Sbjct: 58 VRI 60 >gi|222823278|ref|YP_002574851.1| flagellar motor switch protein FliM [Campylobacter lari RM2100] gi|222538499|gb|ACM63600.1| flagellar motor switch protein FliM [Campylobacter lari RM2100] Length = 363 Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 38/78 (48%), Gaps = 7/78 (8%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIME 130 LI V + +LG + ++ ++L +GD++ LD+ + + I+ + E+ + + Sbjct: 255 LIGRAEVIYEAMLGKTFINVNEFLDLKQGDILKLDRSADDKAIVAIDKK-----EVFLAQ 309 Query: 131 EDDTHF--GVRVIEILNA 146 F ++++E++ Sbjct: 310 VGLHRFRKSIKILELIKT 327 >gi|269961627|ref|ZP_06175989.1| flagellar motor switch protein [Vibrio harveyi 1DA3] gi|269833668|gb|EEZ87765.1| flagellar motor switch protein [Vibrio harveyi 1DA3] Length = 348 Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S+ + IM+ PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 ++ L + + +L+ L GDVI ++ Sbjct: 260 RVNLLEKDISLRDLMELQPGDVIPIE 285 >gi|85710186|ref|ZP_01041251.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1] gi|85688896|gb|EAQ28900.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1] Length = 343 Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +P+ ++ ++G + + L L GD I L + I A+G++ D+ Sbjct: 239 MPLTLEAVVGEIDLTLGRLEQLRPGDKIPLTISRDLPL--RIGETVFARGKV---GRLDS 293 Query: 135 HFGVRVI 141 + +RV Sbjct: 294 NLALRVT 300 >gi|301764120|ref|XP_002917494.1| PREDICTED: LOW QUALITY PROTEIN: stromal membrane-associated protein 1-like [Ailuropoda melanoleuca] Length = 403 Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISE-PISSDSNNILEKSTDNFDLI 72 E D ++ +SP +E I + +D +E P+++ S + D+ D I Sbjct: 158 TTEKLQKTEDQQMELKKSTSPKKAAEPTIDLSGLDGPAEAPVTNGSTTTGQAPNDDLD-I 216 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVI 102 +P+ + L + +++ LSK ++ Sbjct: 217 FGVPLDLFTELATKSKEVAK-KQLSKDSIL 245 >gi|50557178|ref|XP_505997.1| YALI0F28589p [Yarrowia lipolytica] gi|49651867|emb|CAG78809.1| YALI0F28589p [Yarrowia lipolytica] Length = 454 Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 10/121 (8%) Query: 2 IKKVSKISYIKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNI 61 IK +++ K+ + + L D + + E K + P+S+ + Sbjct: 113 IKGSYELATGKEMVSRDPKVLKAELADALLKWKAVDFETEAAKRRL-----PVSAVRSYS 167 Query: 62 LEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 N DL+ + PV + S + ++ + LS V+ L++ + + + + Sbjct: 168 EWDEDKNVDLL-DFPVTITKTGDSSVIPLNGPLALSGEKVLELNRVIAAP----VCGKVL 222 Query: 122 A 122 A Sbjct: 223 A 223 >gi|319790436|ref|YP_004152069.1| flagellar motor switch protein FliM [Thermovibrio ammonificans HB-1] gi|317114938|gb|ADU97428.1| flagellar motor switch protein FliM [Thermovibrio ammonificans HB-1] Length = 347 Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats. Identities = 6/47 (12%), Positives = 23/47 (48%) Query: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITI 116 + ++ +++ + L + +++ +GD + LD G+ + + + Sbjct: 241 EKLLKTNLRVWLELTRKKFSVKEVLSWKEGDKLQLDVSKGDLLKLYV 287 >gi|153854475|ref|ZP_01995753.1| hypothetical protein DORLON_01748 [Dorea longicatena DSM 13814] gi|149753001|gb|EDM62932.1| hypothetical protein DORLON_01748 [Dorea longicatena DSM 13814] Length = 738 Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 16/133 (12%) Query: 13 DNLEGRSMHIDNPLQDT------NVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66 + NP +T N +P ++I +++ + P+ N + T Sbjct: 385 QTIHRLLEVSGNPDDETIGGFQRNAENPLEADVVII--DEMSMVDLPLMYALLNAIVPGT 442 Query: 67 DNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK---RVGESVDITINNQKIAK 123 L+ ++ + GS + ++++ V+ L K + GES DI +N KI + Sbjct: 443 RVI-LVGDVNQLPSVGPGSV---LKDIISSECFSVVKLTKIFRQAGES-DIIVNAHKINR 497 Query: 124 GEITIMEEDDTHF 136 GE +++ F Sbjct: 498 GEPVVLDNKSMDF 510 >gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 2250] gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. B076] gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori str. 301020] gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 322 Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWINALKEDVLDVNVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + + + + +++++ GDVI ++ + ES+ + N Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE--LSESLVMRANG 296 >gi|119503672|ref|ZP_01625755.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] gi|119460734|gb|EAW41826.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] Length = 323 Score = 34.8 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES--VDITINNQKIAKGEITIMEED 132 I V++ ++ + NL+ G VI +D E + + + IA+G+ Sbjct: 256 IDVELCGVVSLLETSLRNLLAFKVGTVIPID----EPQTAQLMVEGRGIARGK---YGAH 308 Query: 133 DTHFGVRVIEILNAQ 147 D+ V++ + ++ Sbjct: 309 DSSRAVQITDFSRSK 323 >gi|315179666|gb|ADT86580.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 272 Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 21/39 (53%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 PV++ ++L M +S ++ L+ D++ +D V I Sbjct: 205 PVRLNVLLSKKTMPLSEVLRLTPNDILPIDLLSTVPVSI 243 >gi|126741268|ref|ZP_01756947.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6] gi|126717673|gb|EBA14396.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6] Length = 458 Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Query: 50 ISEPISSDSNNILEKSTDNFDLIM-NIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRV 108 + EP + + + M N+ ++ +L + ++ L NL GDVI L++ Sbjct: 201 LPEPTPEELGLAGAAAGPSLGSSMGNLRAELSAVLCKMRLPLNELSNLKPGDVIPLEQAF 260 Query: 109 GESVD-ITINNQKIAKGEITIMEEDDTHFGVRVIE 142 D I+I Q IA+G++ + + VR+ E Sbjct: 261 LYETDLISIGGQSIAQGKL---GQMNGSRAVRLNE 292 >gi|187920207|ref|YP_001889238.1| shikimate 5-dehydrogenase [Burkholderia phytofirmans PsJN] gi|187718645|gb|ACD19868.1| shikimate 5-dehydrogenase [Burkholderia phytofirmans PsJN] Length = 277 Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 6/112 (5%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 G+ M++ P + + SE + + + + + I ++ D L+ +I Sbjct: 59 GKGMNVTAPFKLKAFAMADERSE----RAQLAGAANALKFEDGRIAAENFDGVGLVRDIE 114 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V + + + + + +G ++ V++ I N+ +AK E + Sbjct: 115 VNLDLPMAGKRVLVLGAGGAMRGALLPF--LAARPVELVIANRDVAKAEALV 164 >gi|88704280|ref|ZP_01101994.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71] gi|88701331|gb|EAQ98436.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71] Length = 327 Score = 34.4 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKG 124 I +++ +L + + +++L+ L G VI L E V + ++N +A+G Sbjct: 255 IELEVAGVLATQSIALADLLELEAGAVIPL--APAEQVSLKVDNVTLAEG 302 >gi|30248480|ref|NP_840550.1| flagellar motor switch protein FliM [Nitrosomonas europaea ATCC 19718] gi|30138366|emb|CAD84375.1| Flagellar motor switch protein FliM [Nitrosomonas europaea ATCC 19718] Length = 330 Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 18/30 (60%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLD 105 +++ LG + + ++N+ +GDVI LD Sbjct: 261 EIEIIANLGQTQVTLHQILNMQEGDVIALD 290 >gi|171057710|ref|YP_001790059.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6] gi|170775155|gb|ACB33294.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6] Length = 334 Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 57/153 (37%), Gaps = 17/153 (11%) Query: 7 KISYIKDNLEGRSMHIDNPLQDTNVSS-------PTNNSEMLIQKNDVDNISEPISSDSN 59 ++ Y + ++ + +I P + +S T I ++ I + + S + Sbjct: 176 ELEYQRSEMQPQFANIAAPGEIVVTTSFTLEIGDATGTIHFCIPYATLEPIRDVLYSSTQ 235 Query: 60 NILEKSTDNFDLIMN-----IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + + +M V++ L + L+ L GD I LD +S+++ Sbjct: 236 GDSAEPDRRWVKLMTHQIQAAQVQLVAELAHAPATVEQLLALKAGDFIELDLI--KSIEV 293 Query: 115 TINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 ++ + + + + + ++V +L Q Sbjct: 294 KVDGVPVMEAQ---YGTSNGKYALKVDRMLTNQ 323 >gi|322435511|ref|YP_004217723.1| Glutamate synthase (ferredoxin) [Acidobacterium sp. MP5ACTX9] gi|321163238|gb|ADW68943.1| Glutamate synthase (ferredoxin) [Acidobacterium sp. MP5ACTX9] Length = 1516 Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 14/113 (12%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM---NIP 76 +D P D + +P I + ++ I++ + + L+ P Sbjct: 1254 QPVDGPPLDESWVAPAL---AAIAEGKAYSVEAQIANCDRAVGARLAGEIALLRAQAETP 1310 Query: 77 VKMQIIL-GSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITI 128 V + + L G+ + +G V+ LD + + V + ++ GE+ I Sbjct: 1311 VDVSLKLHGTAGQSFGAFL--VEGMVLELDGQANDFV-----GKGLSGGEVVI 1356 >gi|323456061|gb|EGB11928.1| hypothetical protein AURANDRAFT_20268 [Aureococcus anophagefferens] Length = 1143 Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 8/78 (10%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQI------ILGSCCMQISNLVNLSKGDVITLDKR 107 I++ S N + + D + + PV + + L S + + +++ L+ GDV+ D R Sbjct: 229 IAAASENAANGALEALDALSS-PVSVAVRDGEEVELDSTQLVVGDVILLATGDVVPADCR 287 Query: 108 VGESVDITINNQKIAKGE 125 V + D+ +N + GE Sbjct: 288 VVRAADLKVNEMLL-TGE 304 >gi|47222360|emb|CAG05109.1| unnamed protein product [Tetraodon nigroviridis] Length = 1228 Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 3/87 (3%) Query: 14 NLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIM 73 ++ +++ D P ++ VS P ++ +EP+ D LE+ DL+ Sbjct: 258 DVTEETLYGDFPDENAAVSGPAAPAQSADPACPPG--TEPLEEDERQALEEYEKMQDLLK 315 Query: 74 NIPVKMQI-ILGSCCMQISNLVNLSKG 99 I + + + +G + + +KG Sbjct: 316 TIGLDLGVAEIGRMAARTKERLQGNKG 342 >gi|5679187|gb|AAD46901.1|AF160974_4 HrcQ homolog [Xanthomonas campestris pv. glycines] gi|30524903|gb|AAP34348.1|AF499777_16 HrcQ [Xanthomonas axonopodis pv. glycines] Length = 304 Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117 + + + + + + +Q+ + + +S L L G ++ L V ++ + + + Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 Q I G + + E H GV+++ + + Sbjct: 274 GQTIGIGRLVTVGE---HLGVQILSMSES 299 >gi|283781536|ref|YP_003372291.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068] gi|283439989|gb|ADB18431.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068] Length = 362 Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 V++ + L + +++ L GD+IT DK + ++I + Sbjct: 272 KVELVVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQG 314 >gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] Length = 331 Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 45 NDVDNISEPISSDSNNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLVNLSKGDVIT 103 + + + ISSDS + ++ V + +L M I +++ L KGDVI Sbjct: 234 EPIRELLDAISSDSGEVDGGWQAALRGEVLRAEVSINSLLVEKNMTIRDVMRLKKGDVIP 293 Query: 104 LDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 +D ++V + + +G++ D ++ +++I+ + + Sbjct: 294 IDMP--DTVILKAEGIPVFEGKV---GISDGNYAIQIIDKVKS 331 >gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] Length = 349 Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D ++ P + E + + D S+ + +D + ST + IM++PV Sbjct: 204 VEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETD----VRWSTALREEIMDVPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVR 139 ++ L + + +L+ L GDVI + K +V + + + + M V+ Sbjct: 260 RVNLLEMDIALRDLMELQVGDVIPI-KMPEHAV-MFVEDLPTYR---VKMGRSGEKLAVQ 314 Query: 140 VIEILN 145 V E + Sbjct: 315 VSEKIK 320 >gi|323493118|ref|ZP_08098249.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG 20546] gi|323312589|gb|EGA65722.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG 20546] Length = 272 Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI----TINNQKIAK-GEITIME 130 PVK+ ++L M +S+L++L D++ ++ V I N K G++ ++ Sbjct: 205 PVKLNVLLSQKRMPLSDLLSLQANDILPIELLSTVPVSIGDQHLFNGSVAEKEGQLVLII 264 Query: 131 EDD 133 D Sbjct: 265 NHD 267 >gi|207739217|ref|YP_002257610.1| hrp protein hrcq [Ralstonia solanacearum IPO1609] gi|206592590|emb|CAQ59496.1| hrp conserved protein hrcq [Ralstonia solanacearum IPO1609] Length = 362 Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 16/79 (20%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV---DITIN----NQKIAKG 124 + + V + + L M ++ L L V+TL V D+T+ Q + G Sbjct: 286 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTL------PVKIRDVTVRLVCHGQTLGHG 339 Query: 125 EITIMEEDDTHFGVRVIEI 143 ++ + E G+++ I Sbjct: 340 QLVAVGE---QLGLQIASI 355 >gi|83747859|ref|ZP_00944892.1| HrcQ [Ralstonia solanacearum UW551] gi|83725506|gb|EAP72651.1| HrcQ [Ralstonia solanacearum UW551] Length = 355 Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 16/79 (20%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV---DITIN----NQKIAKG 124 + + V + + L M ++ L L V+TL V D+T+ Q + G Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTL------PVKIRDVTVRLVCHGQTLGHG 332 Query: 125 EITIMEEDDTHFGVRVIEI 143 ++ + E G+++ I Sbjct: 333 QLVAVGE---QLGLQIASI 348 >gi|57168742|ref|ZP_00367873.1| flagellar motor switch protein FliM [Campylobacter coli RM2228] gi|305432516|ref|ZP_07401678.1| flagellar motor switch protein FliM [Campylobacter coli JV20] gi|57019789|gb|EAL56472.1| flagellar motor switch protein FliM [Campylobacter coli RM2228] gi|304444555|gb|EFM37206.1| flagellar motor switch protein FliM [Campylobacter coli JV20] Length = 358 Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 LI V + ILG + + + L +GD++ LD+ + Sbjct: 253 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 292 >gi|153951200|ref|YP_001397325.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. doylei 269.97] gi|152938646|gb|ABS43387.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. doylei 269.97] Length = 359 Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 LI V + ILG + + + L +GD++ LD+ + Sbjct: 254 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 293 >gi|87119476|ref|ZP_01075373.1| flagellar motor switch protein FliM [Marinomonas sp. MED121] gi|86164952|gb|EAQ66220.1| flagellar motor switch protein FliM [Marinomonas sp. MED121] Length = 322 Score = 34.1 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHF 136 V++ + + + +++ GD+I +D + E + + N KG++ + E + Sbjct: 256 VELSAAVAHVDVPLQDVLKFKAGDIIPVD--IPEFITVRANGLPTIKGKLGVSNE---KY 310 Query: 137 GVRVIE 142 V+V+E Sbjct: 311 SVQVVE 316 >gi|330902572|gb|EGH33587.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. japonica str. M301072PT] Length = 244 Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 154 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 208 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + + + +++++ GDVI ++ Sbjct: 209 LTTTIAQRQLPLRDILHMRPGDVIPVE 235 >gi|294665991|ref|ZP_06731254.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604239|gb|EFF47627.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 304 Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117 + + + + + + +Q+ + + +S L L G ++ L V ++ + + + Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273 Query: 118 NQKIAKGEITIMEEDDTHFGVRV 140 Q I G + + E H GV++ Sbjct: 274 GQTIGIGRLVTVGE---HLGVQI 293 >gi|283955445|ref|ZP_06372943.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] gi|283793072|gb|EFC31843.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] Length = 359 Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 LI V + ILG + + + L +GD++ LD+ + Sbjct: 254 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 293 >gi|57237070|ref|YP_178082.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221] gi|86149575|ref|ZP_01067805.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151492|ref|ZP_01069707.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 260.94] gi|86154028|ref|ZP_01072229.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597737|ref|ZP_01100970.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 84-25] gi|121613064|ref|YP_999786.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 81-176] gi|148926866|ref|ZP_01810544.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414374|ref|YP_001481630.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 81116] gi|167004761|ref|ZP_02270519.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356443|ref|ZP_03223207.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561745|ref|YP_002343524.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955504|ref|ZP_06372999.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 1336] gi|315123665|ref|YP_004065669.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57165874|gb|AAW34653.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221] gi|85839843|gb|EAQ57102.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841839|gb|EAQ59086.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 260.94] gi|85842442|gb|EAQ59656.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni HB93-13] gi|87248986|gb|EAQ71948.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 81-176] gi|88190041|gb|EAQ94017.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 84-25] gi|112359451|emb|CAL34234.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844443|gb|EDK21551.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385338|gb|ABV51653.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|205345630|gb|EDZ32269.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792965|gb|EFC31739.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 1336] gi|284925356|gb|ADC27708.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni IA3902] gi|307747020|gb|ADN90290.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni M1] gi|315017387|gb|ADT65480.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057501|gb|ADT71830.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni S3] gi|315927743|gb|EFV07070.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929164|gb|EFV08389.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 305] gi|315931622|gb|EFV10587.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 327] Length = 359 Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 71 LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGE 110 LI V + ILG + + + L +GD++ LD+ + Sbjct: 254 LIGRAEVVYEAILGKTLINVHEFLELKQGDILRLDREADD 293 >gi|28899016|ref|NP_798621.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD 2210633] gi|153837001|ref|ZP_01989668.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|260365238|ref|ZP_05777795.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030] gi|260878788|ref|ZP_05891143.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AN-5034] gi|260897383|ref|ZP_05905879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus Peru-466] gi|260899942|ref|ZP_05908337.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ4037] gi|4322004|gb|AAD15907.1| polar flagellar switch protein FliM [Vibrio parahaemolyticus] gi|28807235|dbj|BAC60505.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD 2210633] gi|149749774|gb|EDM60519.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|308088268|gb|EFO37963.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus Peru-466] gi|308094184|gb|EFO43879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AN-5034] gi|308107409|gb|EFO44949.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ4037] gi|308115479|gb|EFO53019.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030] gi|328474447|gb|EGF45252.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 10329] Length = 348 Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +V P + E + + D S+ + +D + S+ + IM+ PV Sbjct: 204 IEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETD----VRWSSALREEIMDCPVNF 259 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 ++ L + + +L+ L GD+I ++ Sbjct: 260 RVNLLEKDISLRDLMELQPGDIIPIE 285 >gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] Length = 332 Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 6/96 (6%) Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D + + SD +++ E+ + + I + V + + + + ++ + GDVI ++ Sbjct: 225 DVLDAGVQSDIDDVDERWVNALQEDIKEVNVPINTTVCRRRISLRDIARMKAGDVIPVE- 283 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 + E + +T N I K + D +R+ + Sbjct: 284 -IPEHLTVTANGIPIYKA---TLGTRDGKLALRIHD 315 >gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 337 Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V + +L S M + L L GDV+ ++ + + + + GE + ++ Sbjct: 257 EVTLSSVLASKRMTLRQLTGLKVGDVLPIELPAQVPL--CVEDIPLFTGEFGVSNGNN-- 312 Query: 136 FGVRVIEI 143 V++ + Sbjct: 313 -AVKITAV 319 >gi|21241176|ref|NP_640758.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106483|gb|AAM35294.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306] Length = 304 Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117 + + + + + + +Q+ + + +S L L G ++ L V ++ + + + Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNA 146 Q I G + + E H GV+++ + + Sbjct: 274 GQTIGIGRLVTVGE---HLGVQILSMSES 299 >gi|331232871|ref|XP_003329097.1| hypothetical protein PGTG_10837 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309308087|gb|EFP84678.1| hypothetical protein PGTG_10837 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 893 Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 12 KDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDL 71 + + S + PLQ + ++SP + Q D +S PIS S + + Sbjct: 165 EPSRHSFSSELPAPLQLSPINSPQAQEDRQDQTRTFDPVSSPISRKSQSQGVIELGS-SP 223 Query: 72 IMNIPVKMQIILGSCCMQISN 92 +++IP M ISN Sbjct: 224 LVDIPSSFT----KARMPISN 240 >gi|66768580|ref|YP_243342.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. 8004] gi|66573912|gb|AAY49322.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 337 Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V + +L S M + L L GD++ +D + + + GE + ++ Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312 Query: 136 FGVRVIEI 143 V++ + Sbjct: 313 -AVKITAV 319 >gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae 642] Length = 322 Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINN 118 + + + + +++++ GDVI ++ + +S+ + N Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE--LSDSLVLRANG 296 >gi|294625839|ref|ZP_06704455.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599867|gb|EFF43988.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 304 Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITIN 117 + + + + + + +Q+ + + +S L L G ++ L V ++ + + + Sbjct: 214 DTFEPEVAQSASNVAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVY 273 Query: 118 NQKIAKGEITIMEEDDTHFGVRV 140 Q I G + + E H GV++ Sbjct: 274 GQTIGIGRLVTVGE---HLGVQI 293 >gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] Length = 342 Score = 34.1 bits (77), Expect = 7.1, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 57/130 (43%), Gaps = 12/130 (9%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D+ D +V+ P + E + + D SD ++ E+ + I+++ V Sbjct: 223 IELDSGGGDLHVTMPYSMIEPIREMLDAG-----FQSDVSDQDERWVKALREDILDVNVP 277 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 + + +++ +++N+ GDVI ++ E + + N K + + + Sbjct: 278 LGATVVRRQLKLRDILNMQPGDVIPVEMP--EDMIMRANGMPAFK---VKLGAHKGNLAL 332 Query: 139 RVIE-ILNAQ 147 +V+E ++ + Sbjct: 333 QVLEPVVRPR 342 >gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105] gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105] Length = 348 Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDV--ITLDKRVGESVD 113 V + L S + +++++ L GDV I +DK + VD Sbjct: 256 EVDLVASLASTQLTVADIMELRIGDVIPIEIDKVIEARVD 295 >gi|315498450|ref|YP_004087254.1| flagellar motor switch protein flim [Asticcacaulis excentricus CB 48] gi|315416462|gb|ADU13103.1| flagellar motor switch protein FliM [Asticcacaulis excentricus CB 48] Length = 387 Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI------TINNQKIAKG 124 ++++ +L M +S ++NL G+ I L+ +++ N + KG Sbjct: 309 MEVRAVLDEQQMPLSEVLNLKVGETIVLNATADSPIELRCGTIPLTNGKMGRKG 362 >gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. maculicola str. ES4326] Length = 252 Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 134 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 188 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + + + +++++ GDVI ++ Sbjct: 189 LTTTIAQRQLPLRDILHMRPGDVIPVE 215 >gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] Length = 322 Score = 34.1 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + + + +++++ GDVI ++ Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285 >gi|253998475|ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4] gi|313200550|ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688] gi|253985154|gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4] gi|312439866|gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688] Length = 334 Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 V++ L MQ+ +++N+ GDVI L+ + E+++ ++N + Sbjct: 256 EVELVANLAKARMQLGDVLNMKVGDVIPLN--ISETIEAHVDNVPV 299 >gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae FF5] gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aceris str. M302273PT] Length = 322 Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + + + +++++ GDVI ++ Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285 >gi|147679239|ref|YP_001213454.1| putative aminopeptidase 1 [Pelotomaculum thermopropionicum SI] gi|146275336|dbj|BAF61085.1| aspartyl aminopeptidase [Pelotomaculum thermopropionicum SI] Length = 470 Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 9/82 (10%) Query: 75 IPVKMQIILGSCCMQISNLV-NLSKGDV--ITLDKRVGESVDITINNQKIAKGEI----- 126 +PV + G IS+L+ +L+K + D GE ++I +A GE+ Sbjct: 163 VPVVIGERPGEPVFTISDLLPHLAKDQMEKKMADAVSGEGLNILAGGMPVAGGEVKERFK 222 Query: 127 -TIMEEDDTHFGVRVIEILNAQ 147 ++++ + +G+ ++++A+ Sbjct: 223 LAVLDQLNRLYGITEEDLISAE 244 >gi|163731544|ref|ZP_02138991.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149] gi|161394998|gb|EDQ19320.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149] Length = 382 Score = 33.7 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 48 DNISEPISSDSNNILEKSTDNFD-LIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 + E +S+ + S + +M + ++ +L + +S + L GD +++ Sbjct: 191 KAVPERHNSEGESAAPGSPATLEHSVMAVTAELSAVLCRVRVSLSEMSRLRPGDTLSIPS 250 Query: 107 RVGESVDIT-INNQKIAKG 124 +SV++ I +IA+G Sbjct: 251 NAFDSVEVLSIEGARIARG 269 >gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato Max13] gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato K40] gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 322 Score = 33.7 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + + + +++++ GDVI ++ Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285 >gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 322 Score = 33.7 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 204 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 258 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + + + +++++ GDVI ++ Sbjct: 259 LTTTIAQRQLPLRDILHMRPGDVIPVE 285 >gi|260779321|ref|ZP_05888213.1| putative flagellar motor switch protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605485|gb|EEX31780.1| putative flagellar motor switch protein [Vibrio coralliilyticus ATCC BAA-450] Length = 271 Score = 33.7 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 PVK+ ++L M +S L++L DV+ ++ V I Sbjct: 205 PVKLNVLLSKKTMPLSELISLQPNDVLPIELLSSAPVSI 243 >gi|296445666|ref|ZP_06887621.1| anti-FecI sigma factor, FecR [Methylosinus trichosporium OB3b] gi|296256911|gb|EFH03983.1| anti-FecI sigma factor, FecR [Methylosinus trichosporium OB3b] Length = 233 Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 89 QISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 + +L +G +I +D+ +GE VDI +G + I + RV + +A+ Sbjct: 151 PVDDLTAWRRGRLIFVDRPLGEVVDILARYH---RGYVVIAGDALRRL--RVTGVFDAK 204 >gi|298346003|ref|YP_003718690.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 43063] gi|304390239|ref|ZP_07372193.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654591|ref|ZP_07907497.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 51333] gi|315657504|ref|ZP_07910386.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236064|gb|ADI67196.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 43063] gi|304326721|gb|EFL93965.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491055|gb|EFU80674.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 51333] gi|315491976|gb|EFU81585.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 306 Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 2/106 (1%) Query: 17 GRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIP 76 ++ L D ++ P + I + DV + + + D + ++P Sbjct: 179 PITLTAGEHLDDCSIMMPVSMITDAIHQGDVHDTRTEQQKAEAAAVRQHL--VDTLEDVP 236 Query: 77 VKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIA 122 + + + + L L+ GD + L +D+ + + +A Sbjct: 237 IGVAVRFTPRNVNPRELDGLAIGDTLPLIHPTSRPLDLVVGDLILA 282 >gi|121608105|ref|YP_995912.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae EF01-2] gi|121552745|gb|ABM56894.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae EF01-2] Length = 334 Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 14/32 (43%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKR 107 V + L + L+ L GD I L+++ Sbjct: 257 EVVLVAELARADATVEQLLALKPGDFIELERQ 288 >gi|159024056|gb|ABW87284.1| HrcQ [Xanthomonas fuscans subsp. fuscans] Length = 304 Score = 33.7 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 72 IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGES-VDITINNQKIAKGEITIME 130 + + + +Q+ + + +S L L G ++ L V ++ + + + Q I G + + Sbjct: 227 VAELELPVQLEVDQLALSLSTLSGLQPGQILELSVPVDQADIRLVVYGQTIGIGRLVTVG 286 Query: 131 EDDTHFGVRV 140 E H GV++ Sbjct: 287 E---HLGVQI 293 >gi|288917908|ref|ZP_06412268.1| UvrD/REP helicase [Frankia sp. EUN1f] gi|288350697|gb|EFC84914.1| UvrD/REP helicase [Frankia sp. EUN1f] Length = 1157 Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 5/97 (5%) Query: 13 DNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLI 72 D L R+ P +V+S E++ + V S+ ++S ++ + ++ Sbjct: 311 DTLADRTEST-RPETAGDVTSLVALPEIVGEILGVGPKSKAVASQVTTLVSRLGPELGIL 369 Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVG 109 ++P+ +GS + + + L +G+VI ++ G Sbjct: 370 SDVPLDAIAEVGSPTL-VEGIGRLRRGEVI---RQAG 402 >gi|58582231|ref|YP_201247.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624124|ref|YP_451496.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576791|ref|YP_001913720.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576983|ref|YP_001913912.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426825|gb|AAW75862.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368064|dbj|BAE69222.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521243|gb|ACD59188.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521435|gb|ACD59380.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] Length = 337 Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V + +L S M + L L GD++ +D + + + GE + ++ Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312 Query: 136 FGVRVIEI 143 V++ + Sbjct: 313 -AVKITAV 319 >gi|167949200|ref|ZP_02536274.1| hypothetical protein Epers_22951 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 113 Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 20/88 (22%) Query: 35 TNNSEMLIQKNDVDNISE-PISSDSNNILEKSTDNFDLIMNIPVKMQI----------IL 83 +E L +++ + + P + + + + T + D I+++PV + + Sbjct: 16 DEWAEALEEQSGSEGGANLPAVNGAEDEDDAETVSLDAILDVPVIISTGDRPHQDQHPQV 75 Query: 84 GSCCMQISNLVNLSKGDVITLDKRVGES 111 S + + V+ LD+ GE Sbjct: 76 CSSSI---------RDSVVELDRLAGEP 94 >gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis TAC125] gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing [Pseudoalteromonas haloplanktis TAC125] Length = 363 Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +++ P + E + + D S+ +D L S D IM++ V++ Sbjct: 205 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTD----LRWSKALRDEIMDVEVEL 260 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 L + + ++ L GD+I ++ Sbjct: 261 STQLLEVDLTLKQIMELKAGDIIPVE 286 >gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzicola BLS256] Length = 337 Score = 33.7 bits (76), Expect = 8.8, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V + +L S M + L L GD++ +D + + + GE + ++ Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312 Query: 136 FGVRVIEI 143 V++ + Sbjct: 313 -AVKITAV 319 >gi|21231367|ref|NP_637284.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991610|ref|YP_001903620.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. B100] gi|21113030|gb|AAM41208.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167733370|emb|CAP51571.1| Flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris] Length = 337 Score = 33.7 bits (76), Expect = 8.8, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V + +L S M + L L GD++ +D + + + GE + ++ Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312 Query: 136 FGVRVIEI 143 V++ + Sbjct: 313 -AVKITAV 319 >gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] Length = 337 Score = 33.7 bits (76), Expect = 8.8, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTH 135 V + +L S M + L L GD++ +D + + + GE + ++ Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVPL--CVEEIPLFTGEFGVSNGNN-- 312 Query: 136 FGVRVIEI 143 V++ + Sbjct: 313 -AVKITAV 319 >gi|332360787|gb|EGJ38593.1| hypothetical protein HMPREF9380_1192 [Streptococcus sanguinis SK49] Length = 642 Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%) Query: 11 IKDNLEGRSMHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTD 67 K L S P Q ++PT ++ + ++P + S+ E +T Sbjct: 200 GKWVLVKDSADTTTPAQPEQPTTPTEPAQPEVPAPTPAEPAQPTPAPSDRPAEPTTP 256 >gi|124265765|ref|YP_001019769.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] gi|124258540|gb|ABM93534.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] Length = 333 Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 25/157 (15%) Query: 7 KISYIKDNLEGRSMHIDNPLQ---DTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILE 63 ++ Y + ++ + I P + T+ + ++ I EPI + ++ Sbjct: 176 ELEYQRSEMQPQFATIAAPSEIVVTTSFTVEIGDTSGTIHFCIPYATLEPIRDTLYSTVQ 235 Query: 64 KSTDNFD------LIMNI---PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDI 114 + D L I V + L + L+ L GD I LD +D Sbjct: 236 GDANEPDRRWVKLLTQQIQAAEVDLVAELAQAPATVEQLLALKPGDFIELD------LDQ 289 Query: 115 TINNQKIAKGEITIME----EDDTHFGVRVIEILNAQ 147 ++ + + + + + + +++ ++L Q Sbjct: 290 VVHAKVDG---VPVFDCHYGTSNGKYAIKIDQLLTNQ 323 >gi|320354329|ref|YP_004195668.1| surface presentation of antigens (SPOA) protein [Desulfobulbus propionicus DSM 2032] gi|320122831|gb|ADW18377.1| surface presentation of antigens (SPOA) protein [Desulfobulbus propionicus DSM 2032] Length = 345 Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 21/49 (42%) Query: 73 MNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI 121 + + ++ G M I ++ L GD+I L + + + +Q + Sbjct: 266 LEMESQVIARSGLITMTIRRILGLQPGDIIDLQYDPDRPLTVLVEDQPL 314 >gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1] gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] Length = 322 Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 17/150 (11%) Query: 10 YIKDNLEGRSMHIDNPLQDTNVSS---PTNNSEMLIQKNDVDNISEPISSDSNNILEKST 66 YI + +I P + VS+ + + ++ EP+ + + Sbjct: 178 YINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDL 237 Query: 67 DNFDL---------IMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITIN 117 D+ D ++++ V + + +++ +++++ GDVI ++ E + + N Sbjct: 238 DDQDERWVNALRQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEMP--EDMIMRAN 295 Query: 118 NQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 K M + ++VIE + + Sbjct: 296 GVPAFK---VKMGSHKGNLALQVIEPIERR 322 >gi|330940699|gb|EGH43710.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi str. 1704B] Length = 222 Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 104 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 158 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + + + +++++ GDVI ++ Sbjct: 159 LTTTIAQRQLPLRDILHMRPGDVIPVE 185 >gi|325109075|ref|YP_004270143.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM 5305] gi|324969343|gb|ADY60121.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM 5305] Length = 368 Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 7/86 (8%) Query: 42 IQKNDVDNISEPISSDS------NNILEKSTDNFDL-IMNIPVKMQIILGSCCMQISNLV 94 I N ++ ++ +SSD+ I + ++ I V + L + S L+ Sbjct: 225 IPFNTIEPLTGKLSSDTWSAYTKQQISPQQKAQLEVGIGAAKVNLVAALAETHLTASELM 284 Query: 95 NLSKGDVITLDKRVGESVDITINNQK 120 NL GDVI ++ V + + I + + Sbjct: 285 NLDVGDVILTERDVKKGLTIFVEGKP 310 >gi|330899437|gb|EGH30856.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. japonica str. M301072PT] Length = 216 Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNF-DLIMNIPVK 78 + +D D +V+ P + E + + D SD ++ E+ + + ++++ V Sbjct: 98 IELDGGGGDLHVTMPYSMIEPIREMLDAG-----FQSDLDDQDERWVNALKEDVLDVNVP 152 Query: 79 MQIILGSCCMQISNLVNLSKGDVITLD 105 + + + + +++++ GDVI ++ Sbjct: 153 LTTTIAQRQLPLRDILHMRPGDVIPVE 179 >gi|187918152|ref|YP_001883715.1| flagellar motor switch protein FliM [Borrelia hermsii DAH] gi|119861000|gb|AAX16795.1| flagellar motor switch protein FliM [Borrelia hermsii DAH] Length = 352 Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 9/60 (15%) Query: 54 ISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVD 113 +S++ ++L + +N D+++ +G +++ +++L KGDVI L+ +D Sbjct: 253 TTSENLDVLREKLENTDMLL------VAEIGEVKLKVREILSLEKGDVINLE---DSPID 303 >gi|88813208|ref|ZP_01128448.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] gi|88789530|gb|EAR20657.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] Length = 336 Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 48 DNISEPISSDSNNILEKSTDNF-DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDK 106 D +S + SD N++ ++ + + + + PV++ L + + L+ L GD+I ++ Sbjct: 229 DVLSAGVQSDRNDVDQRWVRSLREEMKSAPVRLSCRLTEARVSLHELMRLQPGDIIPIEM 288 Query: 107 RVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIE 142 E+V + + +G + + V++ E Sbjct: 289 P--ETVVLRAAEVPVLRGRL---GCSGGNVAVKITE 319 >gi|330814983|ref|YP_004358688.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3] gi|327367376|gb|AEA58732.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3] Length = 332 Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Query: 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKI---AKGEITIMEED 132 V++ L ++NL GDV+ LD +G++V ++ + G Sbjct: 257 EVELTADLAEVPTTFERILNLRVGDVLPLD--IGDAVTAKVDGVPVMECGYG------IF 308 Query: 133 DTHFGVRVIEILNA 146 + + +RV ++ A Sbjct: 309 NGQYALRVNRMIGA 322 >gi|94500287|ref|ZP_01306820.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65] gi|94427586|gb|EAT12563.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65] Length = 331 Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 75 IPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDT 134 +PV ++ + + + GDVI +D E + N I +G++ + D Sbjct: 255 VPVHGTVV--DREISLREVAAFQPGDVIPVDMP--EDFILQANGTPIFRGQLGV---RDD 307 Query: 135 HFGVRVIEILNAQ 147 + V++ E + + Sbjct: 308 NLAVKIKEPIKRK 320 >gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] Length = 375 Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 42 IQKNDVDNISEPISSDSNNILEKSTDNF-------DLIMNIPVKMQIILGSCCMQISNLV 94 I N ++ +S +SSD+ + +K + D + VKM + L + +L Sbjct: 231 IPFNTIEPLSGKLSSDTWSAYQKKGLDPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLA 290 Query: 95 NLSKGDVITLDKRVGESVDITINN 118 +L+ GDVI + + +++ + Sbjct: 291 HLAVGDVIMTEHPKEDGLEVVVEG 314 >gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] Length = 363 Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 20 MHIDNPLQDTNVSSPTNNSEMLIQKNDVDNISEPISSDSNNILEKSTDNFDLIMNIPVKM 79 + +D D +++ P + E + + D S+ +D L S D IM++ V M Sbjct: 205 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTD----LRWSKALRDEIMDVEVDM 260 Query: 80 QIILGSCCMQISNLVNLSKGDVITLD 105 L + + ++ L GD+I ++ Sbjct: 261 STQLLEVDLTLKQIMELKAGDIIPVE 286 >gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] Length = 395 Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 79 MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138 M LG + I +L +L GDVI L+K +V + + Q G++ + ++ + + Sbjct: 280 MTGQLGVVKLDIEDLYHLKVGDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKK---NIAI 336 Query: 139 RVIE 142 R+ + Sbjct: 337 RIED 340 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.314 0.154 0.419 Lambda K H 0.267 0.0471 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,695,985,257 Number of Sequences: 14124377 Number of extensions: 128163221 Number of successful extensions: 302143 Number of sequences better than 10.0: 2295 Number of HSP's better than 10.0 without gapping: 3225 Number of HSP's successfully gapped in prelim test: 521 Number of HSP's that attempted gapping in prelim test: 297247 Number of HSP's gapped (non-prelim): 4331 length of query: 147 length of database: 4,842,793,630 effective HSP length: 110 effective length of query: 37 effective length of database: 3,289,112,160 effective search space: 121697149920 effective search space used: 121697149920 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 76 (33.7 bits)