HHsearch alignment for GI: 254780689 and conserved domain: COG1536

>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion].

Probab=98.77  E-value=7.8e-06  Score=58.28  Aligned_cols=44  Identities=34%  Similarity=0.459  Sum_probs=24.4

Q ss_pred             HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf             67897419989999998403864788999957888999999837
Q gi|254780689|r  124 IWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRF  167 (345)
Q Consensus       124 ~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~L  167 (345)
T Consensus       125 l~~~i~~EhPQtia~iLs~L~~~~aa~vL~~l~~e~r~~v~~Ri  168 (339)
T COG1536         125 LADLIKNEHPQTIALILSYLPPDQAAEILSTLPEELRADVVKRI  168 (339)
T ss_pred             HHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99998712518899999815877789999859998999999998