HHsearch alignment for GI: 254780689 and conserved domain: PRK05686
>PRK05686 fliG flagellar motor switch protein G; Validated.
Probab=100.00 E-value=0 Score=625.17 Aligned_cols=323 Identities=28% Similarity=0.480 Sum_probs=309.3
Q ss_pred CHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHH
Q ss_conf 9223686879999999838146899985199999999999986138999899999999999998510456-653488999
Q gi|254780689|r 18 SPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGL-TENSKNIES 96 (345)
Q Consensus 18 ~p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~~-~g~~~~~~~ 96 (345)
T Consensus 6 ~~~~Lsg~~KAAilLl~LGee~Aa~vlk~L~~~Ei~~i~~~m~~l~~i~~~~~~~Vl~EF~~~~~~~~~~~~g~~~~~~~ 85 (337)
T PRK05686 6 DLDKLSGPEKAAILLLALGEEAAAKVLKHLTPDEVQKLSAAMANLRNVSPEQVEAVLEEFEDEFEAGAYILMGGIDYARR 85 (337)
T ss_pred HHHHCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 89875849899999999591779999863999999999999975699899999999999999998247767773899999
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 97611497999999754411344567567897419989999998403864788999957888999999837989999999
Q gi|254780689|r 97 ILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIM 176 (345)
Q Consensus 97 lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~ 176 (345)
T Consensus 86 ~L~~alg~~~a~~il~~--i~~~~~~~~~~~L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~eVi 163 (337)
T PRK05686 86 LLEKALGEEKANSILER--ILESLQTSGFDFLRKMDPQQLANFIRNEHPQTIALILSYLDPDQAAEILSLLPEELRADVM 163 (337)
T ss_pred HHHHHCCHHHHHHHHHH--HCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 99983598999999986--2156658768998659999999998724858999999809999999999869999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 998404899989999999999997223---44212363789999950177577999999999865999999997415789
Q gi|254780689|r 177 KRTVNLPKISPYIQKTIEKCIVEMLPQ---SNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFD 253 (345)
Q Consensus 177 ~Ria~l~~v~~ev~~~ie~~L~~~l~~---~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~Fe 253 (345)
T Consensus 164 ~RiA~l~~v~p~~v~~ie~~L~~~~~~~~~~~~~~~~G~~~vA~ILN~~~~~~~~~il~~L~~~dp~la~~Ir~~mF~Fe 243 (337)
T PRK05686 164 MRIATLEGVQPEALKELEEVLEKKLSSMANADRTKMGGVKTVAEILNNLDRQTEKTIMESLEEEDPELAEKIKDLMFVFE 243 (337)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHEEHH
T ss_conf 99867789999999999999999974355422344553999999987476468999999998758999999998812299
Q ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98509978999998309888999985388989999999610089999999998500589998999999999999999999
Q gi|254780689|r 254 DLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLL 333 (345)
Q Consensus 254 Dl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~ 333 (345)
T Consensus 244 di~~l~~~~l~~ll~~v~~~~l~~ALKga~~~~~~~il~nmS~R~a~~l~eel~~~-gpv~~~dve~Aq~~Iv~~~r~L~ 322 (337)
T PRK05686 244 DLVDLDDRAIQRLLREVDNDDLALALKGADEELREKFLSNMSKRAAEMLREDLEAL-GPVRLSDVEEAQKKIVQIARRLA 322 (337)
T ss_pred HHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 77477999999999848999999987789899999999862899999999999863-99878999999999999999999
Q ss_pred HCCCEECCCC
Q ss_conf 8697951888
Q gi|254780689|r 334 KTNKIELSNP 343 (345)
Q Consensus 334 ~~G~I~l~~~ 343 (345)
T Consensus 323 ~~G~I~l~~~ 332 (337)
T PRK05686 323 EAGEIVLGGG 332 (337)
T ss_pred HCCCEEECCC
T ss_conf 8898885898