HHsearch alignment for GI: 254780689 and conserved domain: PRK05686
>PRK05686 fliG flagellar motor switch protein G; Validated.
Probab=99.11 E-value=5.8e-08 Score=72.33 Aligned_cols=181 Identities=12% Similarity=0.195 Sum_probs=141.4
Q ss_pred HHCCCHHHCC------HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH----
Q ss_conf 4037922368------687999999983814689998519999999999998613899989999999999999851----
Q gi|254780689|r 14 YKEISPVSLT------QKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIA---- 83 (345)
Q Consensus 14 ~~~~~p~~Lt------g~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~---- 83 (345)
T Consensus 115 L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~eVi~RiA~l~~v~p~~v~~ie~~L~~~~~~~~~~ 194 (337)
T PRK05686 115 LRKMDPQQLANFIRNEHPQTIALILSYLDPDQAAEILSLLPEELRADVMMRIATLEGVQPEALKELEEVLEKKLSSMANA 194 (337)
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 86599999999987248589999998099999999998699999999999986778999999999999999997435542
Q ss_pred CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-------CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 04566534889999761149799999975441134456-------75678974199899999984038647889999578
Q gi|254780689|r 84 GIGLTENSKNIESILEEGLEQNELEKLLNKSDISQENN-------NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMP 156 (345)
Q Consensus 84 ~~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~-------~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~ 156 (345)
T Consensus 195 ~~~~~~G~~~vA~ILN~~-~~~~~~~il~~L~~~dp~la~~Ir~~mF~Fedi~~l~~~~l~~ll~~v~~~~l~~ALKga~ 273 (337)
T PRK05686 195 DRTKMGGVKTVAEILNNL-DRQTEKTIMESLEEEDPELAEKIKDLMFVFEDLVDLDDRAIQRLLREVDNDDLALALKGAD 273 (337)
T ss_pred CCCCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCHHHHHHHHHHHEEHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 234455399999998747-6468999999998758999999998812299774779999999998489999999877898
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 889999998379899999999984048999899999999
Q gi|254780689|r 157 PSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEK 195 (345)
Q Consensus 157 ~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~ 195 (345)
T Consensus 274 ~~~~~~il~nmS~R~a~~l~eel~~~gpv~~~dve~Aq~ 312 (337)
T PRK05686 274 EELREKFLSNMSKRAAEMLREDLEALGPVRLSDVEEAQK 312 (337)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999998628999999999998639987899999999