HHsearch alignment for GI: 254780689 and conserved domain: PRK05686

>PRK05686 fliG flagellar motor switch protein G; Validated.
Probab=99.11  E-value=5.8e-08  Score=72.33  Aligned_cols=181  Identities=12%  Similarity=0.195  Sum_probs=141.4

Q ss_pred             HHCCCHHHCC------HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH----
Q ss_conf             4037922368------687999999983814689998519999999999998613899989999999999999851----
Q gi|254780689|r   14 YKEISPVSLT------QKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIA----   83 (345)
Q Consensus        14 ~~~~~p~~Lt------g~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~----   83 (345)
T Consensus       115 L~~~dp~~La~~L~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~~~eVi~RiA~l~~v~p~~v~~ie~~L~~~~~~~~~~  194 (337)
T PRK05686        115 LRKMDPQQLANFIRNEHPQTIALILSYLDPDQAAEILSLLPEELRADVMMRIATLEGVQPEALKELEEVLEKKLSSMANA  194 (337)
T ss_pred             HHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             86599999999987248589999998099999999998699999999999986778999999999999999997435542


Q ss_pred             CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-------CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             04566534889999761149799999975441134456-------75678974199899999984038647889999578
Q gi|254780689|r   84 GIGLTENSKNIESILEEGLEQNELEKLLNKSDISQENN-------NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMP  156 (345)
Q Consensus        84 ~~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~-------~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~  156 (345)
T Consensus       195 ~~~~~~G~~~vA~ILN~~-~~~~~~~il~~L~~~dp~la~~Ir~~mF~Fedi~~l~~~~l~~ll~~v~~~~l~~ALKga~  273 (337)
T PRK05686        195 DRTKMGGVKTVAEILNNL-DRQTEKTIMESLEEEDPELAEKIKDLMFVFEDLVDLDDRAIQRLLREVDNDDLALALKGAD  273 (337)
T ss_pred             CCCCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCHHHHHHHHHHHEEHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf             234455399999998747-6468999999998758999999998812299774779999999998489999999877898


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             889999998379899999999984048999899999999
Q gi|254780689|r  157 PSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEK  195 (345)
Q Consensus       157 ~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~  195 (345)
T Consensus       274 ~~~~~~il~nmS~R~a~~l~eel~~~gpv~~~dve~Aq~  312 (337)
T PRK05686        274 EELREKFLSNMSKRAAEMLREDLEALGPVRLSDVEEAQK  312 (337)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             999999998628999999999998639987899999999