HHsearch alignment of GI: 254780689 and MMDB domain: 1lkv_X_1-65
>1lkv_X (X:1-65) Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima}
Probab=99.72 E-value=2.9e-18 Score=139.99 Aligned_cols=63 Identities=33% Similarity=0.632 Sum_probs=60.7
Q ss_pred CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 756789741998999999840386478899995788899999983798999999999840489
Q gi|254780689|r 122 NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPK 184 (345)
Q Consensus 122 ~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~ 184 (345)
.++|++|+|++|+.|++||++|||||||+|||||+|++||+||..||++.|.+|++|||++++
T Consensus 2 ~~~~~~L~~~~~~~l~~~l~~EhPQ~iAliLs~L~p~~AA~VL~~lp~~~r~dv~~Ria~l~~ 64 (65)
T 1lkv_X 2 VKPFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLER 64 (65)
T ss_dssp ----------CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf 974899873999999999982899999999971998999999997999999999998531234