HHsearch alignment of GI: 254780689 and MMDB domain: 1lkv_X_1-65

>1lkv_X (X:1-65) Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima}
Probab=99.72  E-value=2.9e-18  Score=139.99  Aligned_cols=63  Identities=33%  Similarity=0.632  Sum_probs=60.7

Q ss_pred             CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf             756789741998999999840386478899995788899999983798999999999840489
Q gi|254780689|r  122 NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPK  184 (345)
Q Consensus       122 ~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~  184 (345)
                      .++|++|+|++|+.|++||++|||||||+|||||+|++||+||..||++.|.+|++|||++++
T Consensus         2 ~~~~~~L~~~~~~~l~~~l~~EhPQ~iAliLs~L~p~~AA~VL~~lp~~~r~dv~~Ria~l~~   64 (65)
T 1lkv_X            2 VKPFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLER   64 (65)
T ss_dssp             ----------CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf             974899873999999999982899999999971998999999997999999999998531234