HHsearch alignment of GI: 254780689 and MMDB domain: 1lkv_X_138-232
>1lkv_X (X:138-232) Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima}
Probab=99.88 E-value=4.9e-22 Score=164.97 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=86.5
Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85099789999983098889999853889899999996100899999999985005899989999999999999999998
Q gi|254780689|r 255 LITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLK 334 (345)
Q Consensus 255 l~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~ 334 (345)
|.++++++++.+|++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++.+|+|++
T Consensus 1 l~~l~~~~l~~il~~v~~~~la~ALkga~~~~~~~il~nmS~R~~~~l~ee~~~~-g~v~~~dve~Aq~~Iv~~~r~L~~ 79 (95)
T 1lkv_X 1 ILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEE 79 (95)
T ss_dssp GGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7860442176777750654420236999999999999969999999999875625-997099999999999999999986
Q ss_pred CCCEECCCCCC
Q ss_conf 69795188889
Q gi|254780689|r 335 TNKIELSNPIK 345 (345)
Q Consensus 335 ~G~I~l~~~~~ 345 (345)
+|+|+|..+.+
T Consensus 80 ~G~I~l~~~~e 90 (95)
T 1lkv_X 80 AGEIVIARGGG 90 (95)
T ss_dssp TTSSCCCC---
T ss_pred CCCEEECCCCC
T ss_conf 89988457997