HHsearch alignment of GI: 254780689 and MMDB domain: 1lkv_X_138-232

>1lkv_X (X:138-232) Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima}
Probab=99.88  E-value=4.9e-22  Score=164.97  Aligned_cols=90  Identities=18%  Similarity=0.317  Sum_probs=86.5

Q ss_pred             HHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85099789999983098889999853889899999996100899999999985005899989999999999999999998
Q gi|254780689|r  255 LITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLK  334 (345)
Q Consensus       255 l~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~  334 (345)
                      |.++++++++.+|++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++.+|+|++
T Consensus         1 l~~l~~~~l~~il~~v~~~~la~ALkga~~~~~~~il~nmS~R~~~~l~ee~~~~-g~v~~~dve~Aq~~Iv~~~r~L~~   79 (95)
T 1lkv_X            1 ILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEE   79 (95)
T ss_dssp             GGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             7860442176777750654420236999999999999969999999999875625-997099999999999999999986


Q ss_pred             CCCEECCCCCC
Q ss_conf             69795188889
Q gi|254780689|r  335 TNKIELSNPIK  345 (345)
Q Consensus       335 ~G~I~l~~~~~  345 (345)
                      +|+|+|..+.+
T Consensus        80 ~G~I~l~~~~e   90 (95)
T 1lkv_X           80 AGEIVIARGGG   90 (95)
T ss_dssp             TTSSCCCC---
T ss_pred             CCCEEECCCCC
T ss_conf             89988457997