Query gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 345
No_of_seqs 124 out of 735
Neff 6.8
Searched_HMMs 33803
Date Wed Jun 1 14:40:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780689.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1qc7_A Protein (FLIG); flagel 99.9 9.9E-26 2.9E-30 189.4 11.3 96 249-345 1-96 (101)
2 >1lkv_X Flagellar motor switch 99.9 4.9E-22 1.4E-26 165.0 11.2 90 255-345 1-90 (95)
3 >1lkv_X Flagellar motor switch 99.7 2.9E-18 8.6E-23 140.0 4.4 63 122-184 2-64 (65)
4 >2zy9_A Mg2+ transporter MGTE; 99.3 4.6E-13 1.3E-17 105.7 2.9 150 98-256 8-157 (158)
5 >1lkv_X Flagellar motor switch 99.2 2.7E-11 7.9E-16 94.0 4.7 45 210-254 1-45 (45)
6 >2zy9_A Mg2+ transporter MGTE; 97.1 0.0072 2.1E-07 38.2 9.4 101 123-233 43-149 (158)
7 >2oux_A Magnesium transporter; 95.0 0.26 7.8E-06 27.9 9.0 71 104-178 2-73 (82)
8 >2yvy_A MGTE, Mg2+ transporter 94.6 0.087 2.6E-06 31.1 5.6 69 126-197 7-75 (82)
9 >2oux_A Magnesium transporter; 93.5 0.07 2.1E-06 31.7 3.4 52 126-177 7-60 (82)
10 >1qc7_A Protein (FLIG); flagel 93.5 0.55 1.6E-05 25.8 9.0 73 125-197 4-76 (101)
11 >1lkv_X Flagellar motor switch 92.9 0.11 3.2E-06 30.4 3.6 45 123-167 15-59 (65)
12 >1ixr_A Holliday junction DNA 75.4 5.4 0.00016 19.3 5.7 80 34-113 79-169 (191)
13 >1cuk_A RUVA protein; DNA repa 61.8 10 0.0003 17.4 7.1 52 34-85 15-71 (79)
14 >2gtq_A Aminopeptidase N; alan 53.8 14 0.00041 16.5 6.3 46 152-197 18-72 (73)
15 >3ebh_A PFA-M1, M1 family amin 53.8 14 0.00041 16.5 4.8 46 153-198 21-75 (76)
16 >3kxr_A Magnesium transporter, 52.6 14 0.00041 16.5 3.2 46 259-304 2-47 (52)
17 >2ztd_A Holliday junction ATP- 50.0 16 0.00046 16.2 5.9 48 34-81 16-68 (75)
18 >1dgf_A Catalase; heme, NADPH, 47.9 17 0.0005 15.9 5.1 33 215-247 111-143 (149)
19 >1ev7_A Type IIE restriction e 45.7 3.4 1E-04 20.6 -0.9 62 279-343 4-82 (147)
20 >3c1y_A DNA integrity scanning 45.5 18 0.00054 15.7 3.0 21 58-78 45-65 (74)
21 >3c4r_A Uncharacterized protei 40.9 22 0.00064 15.3 4.7 44 125-174 50-93 (151)
22 >2af7_A Gamma-carboxymuconolac 38.4 24 0.0007 15.0 2.5 37 216-254 8-44 (46)
23 >1m7s_A Catalase; beta barrel, 37.9 24 0.00071 14.9 5.3 42 39-80 100-142 (170)
24 >1gwe_A Catalase; oxidoreducta 36.7 25 0.00074 14.8 5.1 41 39-79 91-133 (165)
25 >1kg2_A A/G-specific adenine g 34.9 27 0.00079 14.6 3.8 56 240-295 27-82 (86)
26 >1t07_A Hypothetical UPF0269 p 34.8 27 0.00079 14.6 2.4 50 258-307 24-73 (94)
27 >1bh9_B TAFII28; histone fold, 29.1 33 0.00098 14.0 6.3 64 262-338 8-71 (72)
28 >3ej6_A Catalase-3; heme, hydr 26.1 37 0.0011 13.7 6.1 20 142-161 279-298 (453)
29 >1kft_A UVRC, excinuclease ABC 24.4 40 0.0012 13.5 2.9 42 35-76 32-75 (78)
30 >3bpz_A Potassium/sodium hyper 23.3 42 0.0012 13.3 3.1 33 161-193 6-46 (62)
31 >2a1j_A DNA repair endonucleas 22.5 38 0.0011 13.6 1.3 18 60-77 7-24 (63)
32 >3iko_C Nucleoporin NUP84; NPC 22.4 32 0.00095 14.1 0.9 34 136-169 64-97 (107)
33 >3c5y_A Ribose/galactose isome 21.8 45 0.0013 13.1 5.0 84 187-270 140-229 (231)
34 >2isa_A Catalase; peroxidase, 21.6 45 0.0013 13.1 5.0 36 213-248 389-424 (434)
35 >2i0z_A NAD(FAD)-utilizing deh 21.6 45 0.0013 13.1 3.8 50 89-141 17-66 (67)
36 >1eij_A Hypothetical protein M 21.4 46 0.0014 13.1 3.6 51 177-227 23-73 (80)
37 >2d0s_A Cytochrome C, cytochro 20.3 48 0.0014 12.9 2.0 18 124-141 59-76 (79)
38 >1qwl_A KATA catalase; beta ba 20.3 48 0.0014 12.9 5.1 41 39-79 93-135 (170)
No 1
>>1qc7_A Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima} (A:)
Probab=99.93 E-value=9.9e-26 Score=189.38 Aligned_cols=96 Identities=20% Similarity=0.383 Sum_probs=93.5
Q ss_pred CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 15789985099789999983098889999853889899999996100899999999985005899989999999999999
Q gi|254780689|r 249 VFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQE 328 (345)
Q Consensus 249 mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~ 328 (345)
||+|+||.++++++++.+|++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++.
T Consensus 1 mF~F~dl~~l~~~~l~~ll~~i~~~~la~ALkga~~~~~~~il~nms~R~~~~l~~el~~~-g~V~~~dve~Aq~~Iv~~ 79 (101)
T 1qc7_A 1 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINI 79 (101)
T ss_dssp CCCGGGGGGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf 9563566548988999999968998999998689999999999866899999999999863-998899999999999999
Q ss_pred HHHHHHCCCEECCCCCC
Q ss_conf 99999869795188889
Q gi|254780689|r 329 AISLLKTNKIELSNPIK 345 (345)
Q Consensus 329 ~r~L~~~G~I~l~~~~~ 345 (345)
+|+|+++|+|+|....+
T Consensus 80 ~r~L~~~G~I~l~~~~e 96 (101)
T 1qc7_A 80 IRRLEEAGEIVIARGGG 96 (101)
T ss_dssp HHHHHHTTCCCBCTTCC
T ss_pred HHHHHHCCCEEECCCCC
T ss_conf 99999889988526997
No 2
>>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:138-232)
Probab=99.88 E-value=4.9e-22 Score=164.97 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=86.5
Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85099789999983098889999853889899999996100899999999985005899989999999999999999998
Q gi|254780689|r 255 LITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLK 334 (345)
Q Consensus 255 l~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~ 334 (345)
|.++++++++.+|++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++.+|+|++
T Consensus 1 l~~l~~~~l~~il~~v~~~~la~ALkga~~~~~~~il~nmS~R~~~~l~ee~~~~-g~v~~~dve~Aq~~Iv~~~r~L~~ 79 (95)
T 1lkv_X 1 ILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEE 79 (95)
T ss_dssp GGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7860442176777750654420236999999999999969999999999875625-997099999999999999999986
Q ss_pred CCCEECCCCCC
Q ss_conf 69795188889
Q gi|254780689|r 335 TNKIELSNPIK 345 (345)
Q Consensus 335 ~G~I~l~~~~~ 345 (345)
+|+|+|..+.+
T Consensus 80 ~G~I~l~~~~e 90 (95)
T 1lkv_X 80 AGEIVIARGGG 90 (95)
T ss_dssp TTSSCCCC---
T ss_pred CCCEEECCCCC
T ss_conf 89988457997
No 3
>>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:1-65)
Probab=99.72 E-value=2.9e-18 Score=139.99 Aligned_cols=63 Identities=33% Similarity=0.632 Sum_probs=60.7
Q ss_pred CCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 756789741998999999840386478899995788899999983798999999999840489
Q gi|254780689|r 122 NSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPK 184 (345)
Q Consensus 122 ~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~ 184 (345)
.++|++|+|++|+.|++||++|||||||+|||||+|++||+||..||++.|.+|++|||++++
T Consensus 2 ~~~~~~L~~~~~~~l~~~l~~EhPQ~iAliLs~L~p~~AA~VL~~lp~~~r~dv~~Ria~l~~ 64 (65)
T 1lkv_X 2 VKPFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLER 64 (65)
T ss_dssp ----------CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf 974899873999999999982899999999971998999999997999999999998531234
No 4
>>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:1-158)
Probab=99.33 E-value=4.6e-13 Score=105.66 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=122.0
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 76114979999997544113445675678974199899999984038647889999578889999998379899999999
Q gi|254780689|r 98 LEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMK 177 (345)
Q Consensus 98 L~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~ 177 (345)
..++++..++..+... .........|+.|.+.++..+..+|.++||+++|.+|++|+++.++.|+..||++.+.+|
T Consensus 8 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~l~~~l~~~~p~diA~~L~~l~~~~~~~il~~l~~~~~~~v-- 83 (158)
T 2zy9_A 8 HHHSSGLGVLPGGPLH--MEEKLAVSLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEV-- 83 (158)
T ss_dssp ----------------------------------------CCTTTSCHHHHHHGGGGSCHHHHHHHHHHSCHHHHHHH--
T ss_pred CCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH--
T ss_conf 3457764668899740--249999999999987899999999883999999999981999999999995997568899--
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 9840489998999999999999722344212363789999950177577999999999865999999997415789985
Q gi|254780689|r 178 RTVNLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLI 256 (345)
Q Consensus 178 Ria~l~~v~~ev~~~ie~~L~~~l~~~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~ 256 (345)
+..++++....+-..|..... ..-....+...+|+|+|.++...++.+...|...+|+.+.+|+..||.|+|..
T Consensus 84 ----l~~l~~~~~~~i~~~l~~~~~-~~~l~~l~~dd~a~il~~l~~~~~~~~~~~L~~l~~~~~~~i~~ll~y~ed~a 157 (158)
T 2zy9_A 84 ----LSHLSPEEQAEYLKTLPPWRL-REILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEA 157 (158)
T ss_dssp ----TTSSCHHHHHHHHHHSCHHHH-HHHHHHSCHHHHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBS
T ss_pred ----HHCCCHHHHHHHHHHCCHHHH-HHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
T ss_conf ----984999999999985999999-99998399568999987263545799999862598778999999873360179
No 5
>>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:93-137)
Probab=99.16 E-value=2.7e-11 Score=93.98 Aligned_cols=45 Identities=27% Similarity=0.587 Sum_probs=44.3
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 637899999501775779999999998659999999974157899
Q gi|254780689|r 210 TGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDD 254 (345)
Q Consensus 210 ~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeD 254 (345)
||++.+|+|||++++..++.||+.|++.||+||++||++||+|||
T Consensus 1 GGv~~~AeIlN~~d~~~e~~il~~i~~~d~eLae~Ir~~MFvFeD 45 (45)
T 1lkv_X 1 GGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFED 45 (45)
T ss_dssp CCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGG
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 889999999985451157788887740377877768761267556
No 6
>>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:1-158)
Probab=97.05 E-value=0.0072 Score=38.23 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=62.4
Q ss_pred CHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHH------CCCCCHHHHHHHHHH
Q ss_conf 56789741998999999840386478899995788899999983798999999999840------489998999999999
Q gi|254780689|r 123 SIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVN------LPKISPYIQKTIEKC 196 (345)
Q Consensus 123 ~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~------l~~v~~ev~~~ie~~ 196 (345)
..-+.|..+.|..++.+|..=+|+..+.|+..|+++.+++||..++++.+..++..+.. +...+++-...|-+.
T Consensus 43 ~l~~~l~~~~p~diA~~L~~l~~~~~~~il~~l~~~~~~~vl~~l~~~~~~~i~~~l~~~~~~~~l~~l~~dd~a~il~~ 122 (158)
T 2zy9_A 43 ALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQA 122 (158)
T ss_dssp ---CCTTTSCHHHHHHGGGGSCHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999883999999999981999999999995997568899984999999999985999999999983995689999872
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9997223442123637899999501775779999999
Q gi|254780689|r 197 IVEMLPQSNSNTSTGPEKVANLINELEKPQVDKLLTS 233 (345)
Q Consensus 197 L~~~l~~~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~ 233 (345)
|... -.+.+..+|+.++......|-.-
T Consensus 123 l~~~----------~~~~~~~~L~~l~~~~~~~i~~l 149 (158)
T 2zy9_A 123 VRKE----------DPAYFQRLKDLLDPRTRAEVEAL 149 (158)
T ss_dssp HHHS----------CHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CCHH----------HHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 6354----------57999998625987789999998
No 7
>>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:59-140)
Probab=95.02 E-value=0.26 Score=27.91 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCHH-HHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 7999999754411344567567-89741998999999840386478899995788899999983798999999999
Q gi|254780689|r 104 QNELEKLLNKSDISQENNNSIW-DHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKR 178 (345)
Q Consensus 104 ~d~a~~ll~~~~~~~~~~~~~~-~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~R 178 (345)
++.+..++..++ .....| +.++.++.+.++.++..=+|--+|=+|.+|+++...+||..|+++.|.+|-.-
T Consensus 2 pe~~aeil~~L~----~~~q~~~~ii~~l~~~~~~~il~~l~~Dd~adll~~lp~~~~~~il~~l~~~~r~~i~~l 73 (82)
T 2oux_A 2 PKELADXFDVIE----EDNENXKDYLAEXRPSYAADXLAEXYTDNAVDLLNXLDKSQKAKYLSLLSSEEAGEIKEL 73 (82)
T ss_dssp HHHHHHHHTTSC----TTSSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888789998733----437999999996899999999986570466677886208888899873014578999997
No 8
>>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:56-137)
Probab=94.58 E-value=0.087 Score=31.08 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=40.2
Q ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 897419989999998403864788999957888999999837989999999998404899989999999999
Q gi|254780689|r 126 DHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCI 197 (345)
Q Consensus 126 ~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L 197 (345)
+.|..+++..-..+++.=.+.-++-+|++|+++-++.+|..||++.+..+-.-+.. ++++--..|...|
T Consensus 7 ev~~el~~~~q~~li~~l~~~~~~~il~~m~~DD~~dll~~Lp~~~~~~~~~iL~~---l~~e~r~~i~~Ll 75 (82)
T 2yvy_A 7 EVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDL---LDPRTRAEVEALA 75 (82)
T ss_dssp HHHHTSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_conf 99997009999999985017899999875161268999986412446799999714---8867899999874
No 9
>>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:59-140)
Probab=93.50 E-value=0.07 Score=31.69 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=30.0
Q ss_pred HHHHCCCHHH-H-HHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8974199899-9-99984038647889999578889999998379899999999
Q gi|254780689|r 126 DHLKETDPGV-I-ADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMK 177 (345)
Q Consensus 126 ~~L~~~~~~~-L-a~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~ 177 (345)
+.|..++++. + ..+++.=++..++-++++|+++.++.+|..||++.+..|+.
T Consensus 7 eil~~L~~~~q~~~~ii~~l~~~~~~~il~~l~~Dd~adll~~lp~~~~~~il~ 60 (82)
T 2oux_A 7 DXFDVIEEDNENXKDYLAEXRPSYAADXLAEXYTDNAVDLLNXLDKSQKAKYLS 60 (82)
T ss_dssp HHHTTSCTTSSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999873343799999999689999999998657046667788620888889987
No 10
>>1qc7_A Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima} (A:)
Probab=93.47 E-value=0.55 Score=25.80 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=64.8
Q ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 7897419989999998403864788999957888999999837989999999998404899989999999999
Q gi|254780689|r 125 WDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCI 197 (345)
Q Consensus 125 ~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L 197 (345)
|+-|..+++..+..++++=++.++|+-|..-+++....+|..+|...+..+.-.|..+++++..-++.--+.+
T Consensus 4 F~dl~~l~~~~l~~ll~~i~~~~la~ALkga~~~~~~~il~nms~R~~~~l~~el~~~g~V~~~dve~Aq~~I 76 (101)
T 1qc7_A 4 FEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKI 76 (101)
T ss_dssp GGGGGGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 3566548988999999968998999998689999999999866899999999999863998899999999999
No 11
>>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:1-65)
Probab=92.90 E-value=0.11 Score=30.45 Aligned_cols=45 Identities=29% Similarity=0.442 Sum_probs=28.9
Q ss_pred CHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 567897419989999998403864788999957888999999837
Q gi|254780689|r 123 SIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRF 167 (345)
Q Consensus 123 ~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~L 167 (345)
....+|..=.|+.+|-+|..=.|...|-||++|+++..++|+.++
T Consensus 15 ~l~~~l~~EhPQ~iAliLs~L~p~~AA~VL~~lp~~~r~dv~~Ri 59 (65)
T 1lkv_X 15 QLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRI 59 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999828999999999719989999999979999999999985
No 12
>>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} (A:)
Probab=75.35 E-value=5.4 Score=19.25 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----CCCCHHH-HHHHHHHCC
Q ss_conf 83814689998519999999999-----998613899989999999999999851045-----6653488-999976114
Q gi|254780689|r 34 AMEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDEFESQFIAGIG-----LTENSKN-IESILEEGL 102 (345)
Q Consensus 34 ~LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~EF~~~~~~~~~-----~~g~~~~-~~~lL~~al 102 (345)
.+||..|-.+|.+|+.+|+.... ...++++.|.+...+.++.|+.+.+..-.. .....+. ...+..=.+
T Consensus 79 GIGpk~Al~iL~~~~~~el~~aI~~~d~~~L~~ipGIG~KtA~rIi~eLk~k~~~~~~~~~~~~~~~~~e~~~aL~~LGy 158 (191)
T 1ixr_A 79 GVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKVPPHLLAGEKVESEAAEEAVMALAALGF 158 (191)
T ss_dssp CCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC-----------------------
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 84778899998559999999999828999851388845688999999998642521001123355568999999998699
Q ss_pred CHHHHHHHHHH
Q ss_conf 97999999754
Q gi|254780689|r 103 EQNELEKLLNK 113 (345)
Q Consensus 103 ~~d~a~~ll~~ 113 (345)
....+...+..
T Consensus 159 ~~~ea~~ai~~ 169 (191)
T 1ixr_A 159 KEAQARAVVLD 169 (191)
T ss_dssp -----------
T ss_pred CHHHHHHHHHH
T ss_conf 99999999999
No 13
>>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} (A:66-144)
Probab=61.84 E-value=10 Score=17.42 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=44.1
Q ss_pred HHCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 83814689998519999999999-----99861389998999999999999985104
Q gi|254780689|r 34 AMEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDEFESQFIAGI 85 (345)
Q Consensus 34 ~LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~EF~~~~~~~~ 85 (345)
.+|+..|-.||.+|+++|+.+.. ...++++.|.+...+.++-|..+.+..-.
T Consensus 15 GIGpk~Al~iLs~~~~~el~~aI~~~D~~~L~~ipGIG~KtAerii~eLk~K~~~~~ 71 (79)
T 1cuk_A 15 GVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLH 71 (79)
T ss_dssp SCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 848999999975799999999999289999841999889999999999998887531
No 14
>>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidases, MCSG, PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis MC58} (A:795-867)
Probab=53.79 E-value=14 Score=16.55 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=31.5
Q ss_pred HHHCCHHHHHHHHHHC------CHH---HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9957888999999837------989---999999998404899989999999999
Q gi|254780689|r 152 LSMMPPSIGASVLLRF------PNK---IHADIMKRTVNLPKISPYIQKTIEKCI 197 (345)
Q Consensus 152 Ls~L~~~~Aa~VL~~L------p~e---~r~ev~~Ria~l~~v~~ev~~~ie~~L 197 (345)
|-.++|..||+.+.-| ++. +..+.+.||+..+.+|+++.+.+.+.|
T Consensus 18 lD~~NPqvAARl~~~f~~w~~~~~~r~~~m~~~L~~i~~~~~LS~dv~Eiv~k~L 72 (73)
T 2gtq_A 18 IDRFNPQVAARLVQAFNLCNKLEPHRKNLVKQALQRIRAQEGLSKDVGEIVGKIL 72 (73)
T ss_dssp HHTTCHHHHHHHGGGGTTGGGBCHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 7375889999999998889864799999999999999708788966999999853
No 15
>>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, cytoplasm, metal-binding, metalloprotease, protease, zinc, hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* (A:814-889)
Probab=53.78 E-value=14 Score=16.55 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=30.2
Q ss_pred HHCCHHHHHHHHHH------CCHHH---HHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 95788899999983------79899---999999984048999899999999999
Q gi|254780689|r 153 SMMPPSIGASVLLR------FPNKI---HADIMKRTVNLPKISPYIQKTIEKCIV 198 (345)
Q Consensus 153 s~L~~~~Aa~VL~~------Lp~e~---r~ev~~Ria~l~~v~~ev~~~ie~~L~ 198 (345)
-..+|..||+.+.- |+++. ....+.||+..+.+|+++.+.|.+.|.
T Consensus 21 D~~NPqvAARl~~~f~~w~r~~~~r~~~m~~~L~ri~~~~~LS~dv~Eiv~k~L~ 75 (76)
T 3ebh_A 21 DKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPQISNNLKEYLLRLTN 75 (76)
T ss_dssp HTTCHHHHHHTTGGGGGGGGBCHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
T ss_conf 4858899999999998888429989999999999997076888149999999847
No 16
>>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1} (A:1-52)
Probab=52.61 E-value=14 Score=16.50 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=39.2
Q ss_pred CHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9789999983098889999853889899999996100899999999
Q gi|254780689|r 259 SSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEE 304 (345)
Q Consensus 259 ~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~e 304 (345)
++..+..+|..+++++|+--=-..++.+.++-|+.|.+|.++-.+.
T Consensus 2 p~~E~d~lF~~i~aEDLiE~sdsLP~~l~DrAL~qM~~rQR~~f~~ 47 (52)
T 3kxr_A 2 PDNEVDLLFAQLSPEDLIEWSDYLPESFTDRALAQXGERQRQRFEL 47 (52)
T ss_dssp -----CCSGGGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 8899999998389788999998699999999998199999999999
No 17
>>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A (A:80-154)
Probab=50.04 E-value=16 Score=16.16 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 83814689998519999999999-----9986138999899999999999998
Q gi|254780689|r 34 AMEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDEFESQF 81 (345)
Q Consensus 34 ~LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~EF~~~~ 81 (345)
.+|+..|-.+|.+|+++|+.... ...++++.|.+...+.++-|..+.+
T Consensus 16 GIGpk~Al~iLs~~~~~el~~aI~~~D~~~L~~ipGIG~KtA~rii~ELk~k~ 68 (75)
T 2ztd_A 16 GVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV 68 (75)
T ss_dssp TCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 22366662322157767777888536889985088835688999999984111
No 18
>>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM NDP; 1.50A {Homo sapiens} (A:152-202,A:400-497)
Probab=47.86 E-value=17 Score=15.95 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=12.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999950177577999999999865999999997
Q gi|254780689|r 215 VANLINELEKPQVDKLLTSLQEVSKEAFDKVRP 247 (345)
Q Consensus 215 vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~ 247 (345)
+|.=|...+....+..+..+.+.|++++.+|.+
T Consensus 111 ia~~L~~v~~~I~~r~i~~f~~vD~dlg~rVa~ 143 (149)
T 1dgf_A 111 IAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQA 143 (149)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 999860899999999999999869999999999
No 19
>>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria aerocolonigenes} (A:171-317)
Probab=45.74 E-value=3.4 Score=20.59 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=45.4
Q ss_pred HCCCCHHHHHHHHHHCC--------HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHHHHH-------HHHCCCEECC
Q ss_conf 53889899999996100--------899999999985005899989999--999999999999-------9986979518
Q gi|254780689|r 279 LHGTSIETQNAILHCLS--------NRQRKIIEENIVLNDSSIAPREVA--MARRSIVQEAIS-------LLKTNKIELS 341 (345)
Q Consensus 279 Lkga~~e~~e~il~nmS--------~Ra~~~l~eel~~~~g~v~~~dve--~Aq~~I~~~~r~-------L~~~G~I~l~ 341 (345)
|.+.+++.+++||+.=| +|.++.+++= ..-||....|+ +.|++.+..+|. |..+|-+.|+
T Consensus 4 ll~l~~~~r~~Ifs~~s~~g~~~G~~R~~eLFR~~---qg~~I~R~vV~tVA~Q~D~mrRVR~~gGaR~~L~~EGIiiLg 80 (147)
T 1ev7_A 4 LLHIPGDVRDQIFSAKSSRGNQHGQARVNELFRRV---HGRLIGRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIILG 80 (147)
T ss_dssp GGSSCHHHHHHHHCCCC----CHHHHHHHHHHHHC---CSSEECHHHHHHHHCSSCTGGGTSSSSSSSSSSGGGTEEEEC
T ss_pred HHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---HCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCEEEEC
T ss_conf 42499889988854665445531679999999998---585466999999982210766653377446552516479974
Q ss_pred CC
Q ss_conf 88
Q gi|254780689|r 342 NP 343 (345)
Q Consensus 342 ~~ 343 (345)
.-
T Consensus 81 ~~ 82 (147)
T 1ev7_A 81 HQ 82 (147)
T ss_dssp SC
T ss_pred CC
T ss_conf 77
No 20
>>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* (A:304-377)
Probab=45.55 E-value=18 Score=15.72 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=8.4
Q ss_pred HHHHCCCCCHHHHHHHHHHHH
Q ss_conf 986138999899999999999
Q gi|254780689|r 58 SAKLLPEISPEELEDIIDEFE 78 (345)
Q Consensus 58 ~m~~l~~i~~~~~~~vl~EF~ 78 (345)
.+..++.|.+...+.+.+-|.
T Consensus 45 ~L~~v~GiG~~~A~~i~~~~~ 65 (74)
T 3c1y_A 45 DLKKVEGIGEKRARAISESIS 65 (74)
T ss_dssp HHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHH
T ss_conf 885447846999999999999
No 21
>>3c4r_A Uncharacterized protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.30A {Escherichia coli O6} (A:)
Probab=40.95 E-value=22 Score=15.26 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=29.7
Q ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
Q ss_conf 78974199899999984038647889999578889999998379899999
Q gi|254780689|r 125 WDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHAD 174 (345)
Q Consensus 125 ~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~e 174 (345)
|+.+ +.+-+.|..+|+++.|.....+-.-+|+ |+..||.+++.-
T Consensus 50 ~~al-~~NrQkiFRWl~~dT~~~~~k~~~L~PA-----IlaALP~E~r~r 93 (151)
T 3c4r_A 50 PEAL-ARNTQKIFRWVEKDTPDAVEKIQALLPA-----IEKSXPPLLVAR 93 (151)
T ss_dssp TTHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHH-----HHHHSCHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHHCCHHHHHH
T ss_conf 7888-8879988888617879999999998899-----999778999988
No 22
>>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG, TT747, structural genomics, PSI, protein structure initiative; 2.81A {Methanothermobacterthermautotrophicus} (A:1-46)
Probab=38.44 E-value=24 Score=15.00 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=30.6
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 999501775779999999998659999999974157899
Q gi|254780689|r 216 ANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDD 254 (345)
Q Consensus 216 A~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeD 254 (345)
-+.|+.+++...+.++++|....|+++.-|-+ |.|-|
T Consensus 8 l~~L~~idg~~g~~Vi~sL~diaPDl~r~ivE--F~fGD 44 (46)
T 2af7_A 8 XEILNRXNRKSYTAIRDELEDVAPDLARFVAE--FAYGD 44 (46)
T ss_dssp HHHHHHHCHHHHHHHHTSHHHHCHHHHHHHHH--TCCCC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHH--HHHHC
T ss_conf 99999981475689998788529899999999--87101
No 23
>>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET: HEM; 1.80A {Pseudomonas syringae} (A:132-193,A:377-484)
Probab=37.89 E-value=24 Score=14.95 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=27.0
Q ss_pred HHHHHHHHCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHH
Q ss_conf 6899985199999999999986-13899989999999999999
Q gi|254780689|r 39 VSGKLLRHFTHAELKEIVASAK-LLPEISPEELEDIIDEFESQ 80 (345)
Q Consensus 39 ~Aa~ilk~l~~~Ei~~i~~~m~-~l~~i~~~~~~~vl~EF~~~ 80 (345)
.|..+++-|++.|-++|...++ .|..++.++.+.++.-|+..
T Consensus 100 Qpg~lyr~l~~~ek~rLi~Nia~~L~~v~~~I~~r~i~~f~kv 142 (170)
T 1m7s_A 100 QAGDLYRSYSAKEKTDLVQKFGESLADTLTESKNIMLSYLYKE 142 (170)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 2569988499999999999999986189899999999999971
No 24
>>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus} (A:141-191,A:390-503)
Probab=36.71 E-value=25 Score=14.83 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=20.0
Q ss_pred HHHHHHHH-CCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHH
Q ss_conf 68999851-99999999999986-1389998999999999999
Q gi|254780689|r 39 VSGKLLRH-FTHAELKEIVASAK-LLPEISPEELEDIIDEFES 79 (345)
Q Consensus 39 ~Aa~ilk~-l~~~Ei~~i~~~m~-~l~~i~~~~~~~vl~EF~~ 79 (345)
.|..++.. |++.|-++|...++ .|..++++..+.++.-|+.
T Consensus 91 Qar~lyr~l~s~~ek~~Li~Nia~~L~~v~~~I~~r~i~~f~~ 133 (165)
T 1gwe_A 91 QAGTLVREVFSDQERDDFVETVAGALKGVRQDVQARAFEYWKN 133 (165)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 2489987619999999999999999877999999999999986
No 25
>>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} (A:24-109)
Probab=34.93 E-value=27 Score=14.65 Aligned_cols=56 Identities=9% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 99999997415789985099789999983098889999853889899999996100
Q gi|254780689|r 240 EAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLS 295 (345)
Q Consensus 240 ~la~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS 295 (345)
....++.+...+++++...+...+..+++.+.-..=+-.++.+...+.+++=+.+|
T Consensus 27 ~~~~~L~~~~~t~~~l~~a~~~~l~~~i~~~G~~~Ka~~i~~~a~~i~~~~~g~vP 82 (86)
T 1kg2_A 27 PYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFP 82 (86)
T ss_dssp HHHHHHHHHCSSHHHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999879999998608999999988468999999999999999886079997
No 26
>>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} (A:)
Probab=34.76 E-value=27 Score=14.63 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99789999983098889999853889899999996100899999999985
Q gi|254780689|r 258 LSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIV 307 (345)
Q Consensus 258 l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~ 307 (345)
.|..-=++|+.+|..+.|..=++-..-=+-++=|+-|..+++..|+++|+
T Consensus 24 yPG~lGkrI~~~VSk~AW~~W~~~QTmLINE~rLnl~dp~~R~~L~~qMe 73 (94)
T 1t07_A 24 YPGAKGEDIYNNVSRKAWDEWQKHQTXLINERRLNXXNAEDRKFLQQEXD 73 (94)
T ss_dssp SSSHHHHHHHHHCBHHHHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99588899999988999999998627651113578798789999999999
No 27
>>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} (B:18-89)
Probab=29.10 E-value=33 Score=14.02 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=44.4
Q ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 99999830988899998538898999999961008999999999850058999899999999999999999986979
Q gi|254780689|r 262 DLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKI 338 (345)
Q Consensus 262 ~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~G~I 338 (345)
-++.++..--.+.+++|+.| +...|.+-+=+.|.++.++- . ..||+.+..+.+|- |+|..+|+|
T Consensus 8 l~~~i~gqsv~~nv~i~v~G----iaKvFvGEiVE~A~~V~~~~-~-e~gPl~P~HirEA~-------rrl~~~g~v 71 (72)
T 1bh9_B 8 LIQSITGTSVSQNVVIAMSG----ISKVFVGEVVEEALDVCEKW-G-EMPPLQPKHMREAV-------RRLKSKGQI 71 (72)
T ss_dssp HHHHHHSSCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHT-T-CCSSCCHHHHHHHH-------HHHHHTTCC
T ss_pred HHHHHCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-C-CCCCCCCHHHHHHH-------HHHHHCCCC
T ss_conf 99998099879139999999----99999999999999999965-3-78999938999999-------999984899
No 28
>>3ej6_A Catalase-3; heme, hydrogen peroxide, iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} (A:68-520)
Probab=26.09 E-value=37 Score=13.67 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHCCHHHHH
Q ss_conf 03864788999957888999
Q gi|254780689|r 142 KEHPQTTAYVLSMMPPSIGA 161 (345)
Q Consensus 142 ~EhPQtiAlILs~L~~~~Aa 161 (345)
.+||-..+...+|-++...-
T Consensus 279 s~d~~L~~R~~aY~~s~~~R 298 (453)
T 3ej6_A 279 TEDPLLQGRLYSYLDTQLNR 298 (453)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 99806653436678888763
No 29
>>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=24.42 E-value=40 Score=13.47 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=15.2
Q ss_pred HCCHHHHHHHHHCCH-HHHHHH-HHHHHHCCCCCHHHHHHHHHH
Q ss_conf 381468999851999-999999-999861389998999999999
Q gi|254780689|r 35 MEKQVSGKLLRHFTH-AELKEI-VASAKLLPEISPEELEDIIDE 76 (345)
Q Consensus 35 LGee~Aa~ilk~l~~-~Ei~~i-~~~m~~l~~i~~~~~~~vl~E 76 (345)
+|+..|..+++||+. +++..- ..++..+..|.+...+.|.+-
T Consensus 32 IG~~~a~~L~~~Fgs~~~i~~As~eeL~~v~gIG~~~A~~I~~~ 75 (78)
T 1kft_A 32 VGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp CSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf 47999999999909989998578999973899899999999999
No 30
>>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 2q0a_A* 3etq_A* (A:46-94,A:169-181)
Probab=23.28 E-value=42 Score=13.33 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=20.6
Q ss_pred HHHHHHCCHHHHHHHHHHHH--H------CCCCCHHHHHHH
Q ss_conf 99998379899999999984--0------489998999999
Q gi|254780689|r 161 ASVLLRFPNKIHADIMKRTV--N------LPKISPYIQKTI 193 (345)
Q Consensus 161 a~VL~~Lp~e~r~ev~~Ria--~------l~~v~~ev~~~i 193 (345)
..||..||+.+|.+|...+- . +...++..+.+|
T Consensus 6 ~~IL~~LP~~LR~eIa~~l~~~ll~kVplF~~~d~~fL~~i 46 (62)
T 3bpz_A 6 DSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAM 46 (62)
T ss_dssp HHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 77998789302589999999999722338877049999999
No 31
>>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} (A:)
Probab=22.50 E-value=38 Score=13.63 Aligned_cols=18 Identities=6% Similarity=0.324 Sum_probs=9.3
Q ss_pred HHCCCCCHHHHHHHHHHH
Q ss_conf 613899989999999999
Q gi|254780689|r 60 KLLPEISPEELEDIIDEF 77 (345)
Q Consensus 60 ~~l~~i~~~~~~~vl~EF 77 (345)
..++.|.+...+.++..|
T Consensus 7 ~~IpgVG~~~a~~Ll~~f 24 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHV 24 (63)
T ss_dssp HTSTTCCHHHHHHHHHHC
T ss_pred HCCCCCCHHHHHHHHHHH
T ss_conf 519998999999999980
No 32
>>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} (C:354-460)
Probab=22.44 E-value=32 Score=14.12 Aligned_cols=34 Identities=6% Similarity=-0.131 Sum_probs=27.7
Q ss_pred HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCH
Q ss_conf 9999840386478899995788899999983798
Q gi|254780689|r 136 IADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPN 169 (345)
Q Consensus 136 La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~ 169 (345)
+..+....+++-||+-.|+|+++.+-++.+.+=.
T Consensus 64 I~~L~~~~~~eLIp~Y~S~L~~~~~~e~ys~fL~ 97 (107)
T 3iko_C 64 ISLLKLQGLYENIPIYATFLNESDCLEACSFILS 97 (107)
T ss_dssp HHHHHHTTCGGGHHHHHTTCGGGGGC--------
T ss_pred HHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999878991309998802988679999999987
No 33
>>3c5y_A Ribose/galactose isomerase; YP_001165900.1, putative ribose 5-phosphate isomerase, structural genomics; HET: MSE; 1.81A {Novosphingobium aromaticivorans DSM12444} (A:)
Probab=21.85 E-value=45 Score=13.15 Aligned_cols=84 Identities=8% Similarity=0.103 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCC-CCCH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HCCCH
Q ss_conf 899999999999972234421-2363----78999995017757799999999986599999999741578998-50997
Q gi|254780689|r 187 PYIQKTIEKCIVEMLPQSNSN-TSTG----PEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDL-ITLSS 260 (345)
Q Consensus 187 ~ev~~~ie~~L~~~l~~~~~~-~~~G----~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl-~~l~~ 260 (345)
..+...++..|...+...+.. ..+- -+.-+.+|+.++.-.....++-|..-||++...+-..-.-|+-+ -+-++
T Consensus 140 ~~a~~iv~~fl~t~F~ggrh~~rv~~i~~~e~~n~~~l~~i~~~~~~~~~~~l~~iD~~l~~~~~~~~~f~~~~~~~~~~ 219 (231)
T 3c5y_A 140 WAAELNLQDVYRKLFDGERGLGYPRERAEIXRKNRGILRELKDASCRDXLTVLKTVDQDLLRAAIAGEKFAELFYPNCKD 219 (231)
T ss_dssp TTHHHHHHHHHHHHHSSCCCCCSSGGGHHHHHHHHHHHHHHHHHHBCCHHHHHHHSCHHHHHHHTCCTTHHHHHTTTCCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 99999999998194776478872576771898879999999999724398999870999999886430689999980881
Q ss_pred HHHHHHHHCC
Q ss_conf 8999998309
Q gi|254780689|r 261 HDLSIVFNNI 270 (345)
Q Consensus 261 ~~l~~ll~ev 270 (345)
..+...++++
T Consensus 220 ~e~~~~v~~~ 229 (231)
T 3c5y_A 220 DAIANYLRSL 229 (231)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
T ss_conf 8999999985
No 34
>>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, 3D-structure, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida LFI1238} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A* (A:50-483)
Probab=21.58 E-value=45 Score=13.11 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=15.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999501775779999999998659999999974
Q gi|254780689|r 213 EKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPK 248 (345)
Q Consensus 213 ~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~ 248 (345)
+.++.-|..++.+..+..+..+...|++++++|++.
T Consensus 389 ~Nia~~L~~v~~~I~~r~i~~f~~vD~dlg~~Va~~ 424 (434)
T 2isa_A 389 DNTARNLNGVPKEIQLRHVTHCYKADPAYGEGIGKL 424 (434)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 999998778899999999999997599999999998
No 35
>>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} (A:302-368)
Probab=21.57 E-value=45 Score=13.11 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHH
Q ss_conf 53488999976114979999997544113445675678974199899999984
Q gi|254780689|r 89 ENSKNIESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLS 141 (345)
Q Consensus 89 g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~ 141 (345)
.+.+.+.+.|.+.+|.--...+++.+.+. ...+|..|.+-+-..|+.+|+
T Consensus 17 ~~~k~i~n~l~~~lP~rL~~~ll~~~gI~---~~~~~~~ls~~~~~~L~~~lK 66 (67)
T 2i0z_A 17 DPKKGIKNVLKGYVPERYFLFLLEKNEID---GSEQAGQVSHEKIRALVKDFK 66 (67)
T ss_dssp STTSBHHHHTTTSSCHHHHHHHHHHTTCC---TTSBGGGSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHCCHHHHHHHHHHHH
T ss_conf 01001222221000245689998750332---011231078999999999875
No 36
>>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=21.43 E-value=46 Score=13.09 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=27.3
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf 998404899989999999999997223442123637899999501775779
Q gi|254780689|r 177 KRTVNLPKISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEKPQV 227 (345)
Q Consensus 177 ~Ria~l~~v~~ev~~~ie~~L~~~l~~~~~~~~~G~~~vA~Iln~l~~~~~ 227 (345)
.|+.++.-|-|+-.+.||+.|......+.-...-.-..+.+||+.+.....
T Consensus 23 eRL~rI~lvKPekA~~VE~~liqlAq~G~l~~kise~~L~~lL~~i~~~~~ 73 (80)
T 1eij_A 23 SRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGKKR 73 (80)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHHSCCC-
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999721403878999999999999985999888399999999998742667
No 37
>>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus} (A:)
Probab=20.32 E-value=48 Score=12.94 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=8.6
Q ss_pred HHHHHHCCCHHHHHHHHH
Q ss_conf 678974199899999984
Q gi|254780689|r 124 IWDHLKETDPGVIADFLS 141 (345)
Q Consensus 124 ~~~~L~~~~~~~La~~L~ 141 (345)
+|..|..-+-..|+.||+
T Consensus 59 ~~~~Ls~~ei~~i~~yi~ 76 (79)
T 2d0s_A 59 PHPQVAEADIEKIVRWVL 76 (79)
T ss_dssp CCTTSCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 135599999999999998
No 38
>>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex, oxidoreductase; HET: HEM; 1.60A {Helicobacter pylori} (A:137-187,A:387-505)
Probab=20.31 E-value=48 Score=12.94 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=22.1
Q ss_pred HHHHHHHHCCHHHHHHHHHHHH-HCCCC-CHHHHHHHHHHHHH
Q ss_conf 6899985199999999999986-13899-98999999999999
Q gi|254780689|r 39 VSGKLLRHFTHAELKEIVASAK-LLPEI-SPEELEDIIDEFES 79 (345)
Q Consensus 39 ~Aa~ilk~l~~~Ei~~i~~~m~-~l~~i-~~~~~~~vl~EF~~ 79 (345)
.|...+.-|++.|-++|...++ .|..+ ++++.+.++.-|+.
T Consensus 93 Qa~~lyr~l~~~ek~~Li~Nia~~L~~v~~~~I~~r~i~~f~~ 135 (170)
T 1qwl_A 93 QPGDYYRSLPADEKERLHDTIGESLAHVTHKEIVDKQLEHFKK 135 (170)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 6469987199999999999999987089958999999999998
Done!