HHsearch results for GI: 254780689 and protein with PDBid: 1lkv_X
>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1
Probab=100.00 E-value=1.7e-44 Score=312.54 Aligned_cols=221 Identities=24% Similarity=0.456 Sum_probs=211.6
Q ss_pred CHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 56789741998999999840386478899995788899999983798999999999840489998999999999999722
Q gi|254780689|r 123 SIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLP 202 (345)
Q Consensus 123 ~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~ 202 (345)
.||++|+|++|++|+.||++||||++|+||+||+|+.||+||..||++.|.+|+.||+.++.++++++..+++.+...+.
T Consensus 3 ~pfd~L~~l~p~~l~~~L~~e~pq~iA~IL~~L~~d~aA~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~a~~l~ 82 (232)
T 1lkv_X 3 KPFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKIS 82 (232)
T ss_dssp ---------CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 74899861999999999981899999999972998999999997999999999998541234689999988999999872
Q ss_pred CCC---CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 344---21236378999995017757799999999986599999999741578998509978999998309888999985
Q gi|254780689|r 203 QSN---SNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKAL 279 (345)
Q Consensus 203 ~~~---~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~AL 279 (345)
... ....+|++.++++||++++..+..++.+++..||+++..|+++||+|+||.+++...++++++++..++++.|+
T Consensus 83 ~~~~~~~~~~~gv~~a~~~l~~~~~~~~~~~~~~l~~~d~~~~~~i~~~l~~f~~l~~l~~~~~~~~l~~i~~~~l~~al 162 (232)
T 1lkv_X 83 GFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALAL 162 (232)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 56532222257899999999853311145666767504778777899873007887650221054554423654410126
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCC
Q ss_conf 38898999999961008999999999850058999899999999999999999986979518888
Q gi|254780689|r 280 HGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELSNPI 344 (345)
Q Consensus 280 kga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~G~I~l~~~~ 344 (345)
+|++.+.+.+||+|||.|++.++.+++..+ |+++.+||++||++|++.+|+++++|.|.|....
T Consensus 163 ~~~~~e~~~~~l~~~~~r~~~vv~~e~~~~-G~it~~DV~~a~~~Iv~~i~~~~~~g~i~l~~~~ 226 (232)
T 1lkv_X 163 KGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEEAGEIVIARGG 226 (232)
T ss_dssp TTCCHHHHHHHHTTSCHHHHHHHHHHHHSC-CCCCHHHHHHHHHHHHHHHHHHHHTTSSCCCC--
T ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 999999999999968798999999887636-9971999999999999999999878998845799