HHsearch results for GI: 254780689 and protein with PDBid: 1lkv_X

>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1
Probab=98.50  E-value=1.3e-05  Score=55.46  Aligned_cols=166  Identities=12%  Similarity=0.148  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHH
Q ss_conf             8799999998381468999851999999999999861389998999999999999985104----566534889999761
Q gi|254780689|r   25 KDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGI----GLTENSKNIESILEE  100 (345)
Q Consensus        25 ~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~----~~~g~~~~~~~lL~~  100 (345)
                      +|-+|++|.-|.++.|+.||..|+++....|...|+.++.++++.+..+-+.....+....    .-.+|...+.++|.+
T Consensus        25 pq~iA~IL~~L~~d~aA~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~a~~l~~~~~~~~~~~~gv~~a~~~l~~  104 (232)
T 1lkv_X           25 PQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNN  104 (232)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999729989999999979999999999985412346899999889999998725653222225789999999985


Q ss_pred             CCCHHHHHHHHHHHHCCCC-------CCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Q ss_conf             1497999999754411344-------567567897419989999998403864788999957888999999837989999
Q gi|254780689|r  101 GLEQNELEKLLNKSDISQE-------NNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHA  173 (345)
Q Consensus       101 al~~d~a~~ll~~~~~~~~-------~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~  173 (345)
                      .-+. ....++..+....+       ..--.|..|..+....+..++++-++++++.++...+.+..+.++..+|...+.
T Consensus       105 ~~~~-~~~~~~~~l~~~d~~~~~~i~~~l~~f~~l~~l~~~~~~~~l~~i~~~~l~~al~~~~~e~~~~~l~~~~~r~~~  183 (232)
T 1lkv_X          105 LDRT-TEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAA  183 (232)
T ss_dssp             SCHH-HHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHH
T ss_pred             CCCC-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHH
T ss_conf             3311-145666767504778777899873007887650221054554423654410126999999999999968798999


Q ss_pred             HHHHHHHHCCCCCHHHHH
Q ss_conf             999998404899989999
Q gi|254780689|r  174 DIMKRTVNLPKISPYIQK  191 (345)
Q Consensus       174 ev~~Ria~l~~v~~ev~~  191 (345)
                      -|-..+..++.+..+-+.
T Consensus       184 vv~~e~~~~G~it~~DV~  201 (232)
T 1lkv_X          184 LLKDELEYMGPVRLKDVE  201 (232)
T ss_dssp             HHHHHHHSCCCCCHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHH
T ss_conf             999887636997199999