HHsearch results for GI: 254780689 and protein with PDBid: 1lkv_X
>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1
Probab=98.50 E-value=1.3e-05 Score=55.46 Aligned_cols=166 Identities=12% Similarity=0.148 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHH
Q ss_conf 8799999998381468999851999999999999861389998999999999999985104----566534889999761
Q gi|254780689|r 25 KDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGI----GLTENSKNIESILEE 100 (345)
Q Consensus 25 ~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~~----~~~g~~~~~~~lL~~ 100 (345)
+|-+|++|.-|.++.|+.||..|+++....|...|+.++.++++.+..+-+.....+.... .-.+|...+.++|.+
T Consensus 25 pq~iA~IL~~L~~d~aA~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~a~~l~~~~~~~~~~~~gv~~a~~~l~~ 104 (232)
T 1lkv_X 25 PQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNN 104 (232)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999729989999999979999999999985412346899999889999998725653222225789999999985
Q ss_pred CCCHHHHHHHHHHHHCCCC-------CCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Q ss_conf 1497999999754411344-------567567897419989999998403864788999957888999999837989999
Q gi|254780689|r 101 GLEQNELEKLLNKSDISQE-------NNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHA 173 (345)
Q Consensus 101 al~~d~a~~ll~~~~~~~~-------~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ 173 (345)
.-+. ....++..+....+ ..--.|..|..+....+..++++-++++++.++...+.+..+.++..+|...+.
T Consensus 105 ~~~~-~~~~~~~~l~~~d~~~~~~i~~~l~~f~~l~~l~~~~~~~~l~~i~~~~l~~al~~~~~e~~~~~l~~~~~r~~~ 183 (232)
T 1lkv_X 105 LDRT-TEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAA 183 (232)
T ss_dssp SCHH-HHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHH
T ss_pred CCCC-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHH
T ss_conf 3311-145666767504778777899873007887650221054554423654410126999999999999968798999
Q ss_pred HHHHHHHHCCCCCHHHHH
Q ss_conf 999998404899989999
Q gi|254780689|r 174 DIMKRTVNLPKISPYIQK 191 (345)
Q Consensus 174 ev~~Ria~l~~v~~ev~~ 191 (345)
-|-..+..++.+..+-+.
T Consensus 184 vv~~e~~~~G~it~~DV~ 201 (232)
T 1lkv_X 184 LLKDELEYMGPVRLKDVE 201 (232)
T ss_dssp HHHHHHHSCCCCCHHHHH
T ss_pred HHHHHHHHCCCCCHHHHH
T ss_conf 999887636997199999