HHSEARCH alignment of GI: 254780689 and SCOP domain: d1lkvx_

Alignment
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=1.8e-39  Score=277.69  Aligned_cols=209  Identities=25%  Similarity=0.478  Sum_probs=200.6

Q ss_pred             CHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC---CCCC
Q ss_conf             9899999984038647889999578889999998379899999999984048999899999999999972234---4212
Q gi|254780689|r  132 DPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLPQS---NSNT  208 (345)
Q Consensus       132 ~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~~~---~~~~  208 (345)
                      ||++|++||++||||++|+||+||+|++||+||..||++.|.+|+.+|+.++.++++.+..++..+...+.+.   ....
T Consensus         1 dp~~la~~l~~e~p~~~A~iL~~L~~d~aa~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1lkvx_           1 DPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSK   80 (213)
T ss_dssp             CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHC
T ss_conf             98999999980699999999972998899999996999999999996050023365999998888874415522010001


Q ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHH
Q ss_conf             36378999995017757799999999986599999999741578998509978999998309888999985388989999
Q gi|254780689|r  209 STGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQN  288 (345)
Q Consensus       209 ~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e  288 (345)
                      .+|.+.+++|||++++..++.++.++...||+++..++++||.|+||.++....++.+++++..+.++.|++|++.+.+.
T Consensus        81 ~~~~~~v~~il~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~~~~~l~~i~~~~~~~a~~~~~~e~~~  160 (213)
T d1lkvx_          81 VGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKE  160 (213)
T ss_dssp             CCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHEEEEEECCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHEEEHHCCCHHHHH
T ss_conf             30899999999750122100020000221733313476401562018997203076778773100012100038999999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf             99961008999999999850058999899999999999999999986979518
Q gi|254780689|r  289 AILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELS  341 (345)
Q Consensus       289 ~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~G~I~l~  341 (345)
                      +||+|||.|++.++.+++..+ |+|+.+||++||++|++.+|+|+++|+|+|.
T Consensus       161 ~~l~~~~~~~~~vv~~e~~~~-G~I~~~Die~A~~~i~~~~~~l~~~G~i~l~  212 (213)
T d1lkvx_         161 KIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEEAGEIVIA  212 (213)
T ss_dssp             HHHTTSCHHHHHHHHHHHHSC-CCCCHHHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf             999969998989998753415-9974999999999999999999868977740


SCOP domain information

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]