Query         gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 345
No_of_seqs    124 out of 735
Neff          6.8 
Searched_HMMs 13730
Date          Wed Jun  1 07:32:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780689.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1lkvx_ a.118.14.1 (X:) FliG { 100.0 1.8E-39 1.3E-43  277.7  21.0  209  132-341     1-212 (213)
  2 d1qc7a_ a.118.14.1 (A:) FliG {  99.9 7.5E-26 5.4E-30  187.6  11.3   95  249-344     1-95  (101)
  3 d1lkvx_ a.118.14.1 (X:) FliG {  98.8   9E-07 6.5E-11   61.5  17.5  179    9-194     4-193 (213)
  4 d2ouxa1 a.118.26.1 (A:6-135) M  97.8 0.00042   3E-08   43.8  12.7  117  124-249     9-126 (130)
  5 d2yvxa1 a.118.26.1 (A:7-131) M  97.2 0.00019 1.4E-08   46.0   4.2  101  128-247     7-107 (125)
  6 d2ouxa1 a.118.26.1 (A:6-135) M  96.7    0.02 1.4E-06   32.8  11.2   80   95-177    45-124 (130)
  7 d2yvxa1 a.118.26.1 (A:7-131) M  96.2  0.0031 2.3E-07   38.0   4.7   53  124-176    15-67  (125)
  8 d2bgwa1 a.60.2.5 (A:160-229) D  56.5     2.8  0.0002   18.5   2.1   40   36-77     22-65  (70)
  9 d1kfta_ a.60.2.3 (A:) Excinucl  50.2     6.1 0.00044   16.3   3.0   42   35-78     10-55  (56)
 10 d1x2ia1 a.60.2.5 (A:2-69) ATP-  42.8     5.9 0.00043   16.4   2.0   18   60-77     13-30  (68)
 11 d1cuka2 a.60.2.1 (A:65-142) DN  36.8      10 0.00074   14.8   6.7   50   34-83     16-70  (78)
 12 d1ev7a_ c.52.1.9 (A:) Restrict  35.2     2.5 0.00018   18.8  -0.9   60  280-342   166-242 (302)
 13 d2peoa1 a.280.1.1 (A:1-115) Ru  31.0      13 0.00091   14.2   4.4   28  220-247    16-43  (115)
 14 d1ixra1 a.60.2.1 (A:63-135) DN  27.1      15  0.0011   13.8   5.2   43   35-77     18-65  (73)
 15 d1szaa_ a.118.9.4 (A:) PCF11 p  26.3      15  0.0011   13.7   5.3   37  162-199    92-137 (144)
 16 d1hhsa_ e.8.1.6 (A:) dsRNA pha  23.6      17  0.0012   13.4   1.7   54  241-295   598-662 (664)
 17 d1bvsa2 a.60.2.1 (A:64-134) DN  23.3      17  0.0012   13.3   5.7   42   35-76     17-63  (71)
 18 d2i9ca1 a.118.1.25 (A:3-123) H  22.1      18  0.0013   13.2   5.3   92   69-187     8-102 (121)

No 1  
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=1.8e-39  Score=277.69  Aligned_cols=209  Identities=25%  Similarity=0.478  Sum_probs=200.6

Q ss_pred             CHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC---CCCC
Q ss_conf             9899999984038647889999578889999998379899999999984048999899999999999972234---4212
Q gi|254780689|r  132 DPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLPQS---NSNT  208 (345)
Q Consensus       132 ~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~~~---~~~~  208 (345)
                      ||++|++||++||||++|+||+||+|++||+||..||++.|.+|+.+|+.++.++++.+..++..+...+.+.   ....
T Consensus         1 dp~~la~~l~~e~p~~~A~iL~~L~~d~aa~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1lkvx_           1 DPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSK   80 (213)
T ss_dssp             CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHC
T ss_conf             98999999980699999999972998899999996999999999996050023365999998888874415522010001


Q ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHH
Q ss_conf             36378999995017757799999999986599999999741578998509978999998309888999985388989999
Q gi|254780689|r  209 STGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQN  288 (345)
Q Consensus       209 ~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e  288 (345)
                      .+|.+.+++|||++++..++.++.++...||+++..++++||.|+||.++....++.+++++..+.++.|++|++.+.+.
T Consensus        81 ~~~~~~v~~il~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~~~~~l~~i~~~~~~~a~~~~~~e~~~  160 (213)
T d1lkvx_          81 VGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKE  160 (213)
T ss_dssp             CCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHEEEEEECCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHEEEHHCCCHHHHH
T ss_conf             30899999999750122100020000221733313476401562018997203076778773100012100038999999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf             99961008999999999850058999899999999999999999986979518
Q gi|254780689|r  289 AILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELS  341 (345)
Q Consensus       289 ~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~~r~L~~~G~I~l~  341 (345)
                      +||+|||.|++.++.+++..+ |+|+.+||++||++|++.+|+|+++|+|+|.
T Consensus       161 ~~l~~~~~~~~~vv~~e~~~~-G~I~~~Die~A~~~i~~~~~~l~~~G~i~l~  212 (213)
T d1lkvx_         161 KIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINIIRRLEEAGEIVIA  212 (213)
T ss_dssp             HHHTTSCHHHHHHHHHHHHSC-CCCCHHHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf             999969998989998753415-9974999999999999999999868977740


No 2  
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=99.93  E-value=7.5e-26  Score=187.60  Aligned_cols=95  Identities=20%  Similarity=0.391  Sum_probs=92.5

Q ss_pred             CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             15789985099789999983098889999853889899999996100899999999985005899989999999999999
Q gi|254780689|r  249 VFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQE  328 (345)
Q Consensus       249 mF~FeDl~~l~~~~l~~ll~evd~~~l~~ALkga~~e~~e~il~nmS~Ra~~~l~eel~~~~g~v~~~dve~Aq~~I~~~  328 (345)
                      |||||||.++++++++.++++|+.++|++||||++++++++||+|||+|+++++++||+.+ |||+.+||++||+.|++.
T Consensus         1 MFtFddl~~l~~~~l~~llr~i~~~~l~~ALkga~~~~~~~il~nms~R~~~~l~ee~~~~-g~v~~~dve~Aq~~Iv~~   79 (101)
T d1qc7a_           1 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYM-GPVRLKDVEEAQQKIINI   79 (101)
T ss_dssp             CCCGGGGGGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf             9563676558988999999978988999998679999999999863799999999999863-998899999999999999


Q ss_pred             HHHHHHCCCEECCCCC
Q ss_conf             9999986979518888
Q gi|254780689|r  329 AISLLKTNKIELSNPI  344 (345)
Q Consensus       329 ~r~L~~~G~I~l~~~~  344 (345)
                      +|+|+++|+|+|..+.
T Consensus        80 ~r~l~~~G~I~L~~~~   95 (101)
T d1qc7a_          80 IRRLEEAGEIVIARGG   95 (101)
T ss_dssp             HHHHHHTTCCCBCTTC
T ss_pred             HHHHHHCCCEEECCCC
T ss_conf             9999988998842699


No 3  
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=98.77  E-value=9e-07  Score=61.47  Aligned_cols=179  Identities=12%  Similarity=0.167  Sum_probs=140.5

Q ss_pred             HHHHHHHCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----
Q ss_conf             6854440379223686879999999838146899985199999999999986138999899999999999998510----
Q gi|254780689|r    9 SFKNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAG----   84 (345)
Q Consensus         9 ~~~~~~~~~~p~~Ltg~eKAAilLl~LGee~Aa~ilk~l~~~Ei~~i~~~m~~l~~i~~~~~~~vl~EF~~~~~~~----   84 (345)
                      ++-+..+...|.      -+|++|..|+++.|+.||..|+++....|...|..+..++++.+..+.+.....+...    
T Consensus         4 ~la~~l~~e~p~------~~A~iL~~L~~d~aa~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   77 (213)
T d1lkvx_           4 QLVNFLQSEHPQ------TIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRT   77 (213)
T ss_dssp             HHHHHHHTSCHH------HHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHH------HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             999999806999------99999972998899999996999999999996050023365999998888874415522010


Q ss_pred             CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHC-------CCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCH
Q ss_conf             45665348899997611497999999754411-------34456756789741998999999840386478899995788
Q gi|254780689|r   85 IGLTENSKNIESILEEGLEQNELEKLLNKSDI-------SQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPP  157 (345)
Q Consensus        85 ~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~-------~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~  157 (345)
                      ..-.++...+..+|... +.+.-..++..+..       .....--.|..|..+.+..+..+++.-++++++.++...+.
T Consensus        78 ~~~~~~~~~v~~il~~~-~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~~~~~l~~i~~~~~~~a~~~~~~  156 (213)
T d1lkvx_          78 FSKVGGIDTAAEIMNNL-DRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASD  156 (213)
T ss_dssp             HSSCCCHHHHHHHHHTS-CHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCH
T ss_pred             HHCCHHHHHHHHHHHHC-CCCCCHHHEEEEEECCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHEEEHHCCCH
T ss_conf             00130899999999750-12210002000022173331347640156201899720307677877310001210003899


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             8999999837989999999998404899989999999
Q gi|254780689|r  158 SIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIE  194 (345)
Q Consensus       158 ~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie  194 (345)
                      +.++.++..+|...+.-|-..+..++.++.+-+.+..
T Consensus       157 e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~  193 (213)
T d1lkvx_         157 ELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQ  193 (213)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             9999999969998989998753415997499999999


No 4  
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=97.80  E-value=0.00042  Score=43.84  Aligned_cols=117  Identities=15%  Similarity=0.150  Sum_probs=66.5

Q ss_pred             HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHC
Q ss_conf             678974199899999984038647889999578889999998379899999999984048999899999999999-9722
Q gi|254780689|r  124 IWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIV-EMLP  202 (345)
Q Consensus       124 ~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~-~~l~  202 (345)
                      ..+.|..-+.+.+..++..=||.-+|-+|..|+++....++..+|++..++|+..+-.-..+..+++..+...-. .-+.
T Consensus         9 l~~~l~~~~~~~l~~~l~~lhpaDiA~~l~~l~~~~r~~l~~~l~~~~~a~vl~~l~~~~~~~~~il~~l~~~~~a~il~   88 (130)
T d2ouxa1           9 LLETLKNQQMNEFRELFLALHIYEQGQFYQSLDEKDRQHLYNYLSPKELADMFDVIEEDNENMKDYLAEMRPSYAADMLA   88 (130)
T ss_dssp             HHHHHHTTCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHTTSCTTSSSTTHHHHHSCHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999848799999999859999999999972476899999985208789999981110999999986699999999998


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             34421236378999995017757799999999986599999999741
Q gi|254780689|r  203 QSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKV  249 (345)
Q Consensus       203 ~~~~~~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~~m  249 (345)
                      ..      ...-+|+|++.++.+..+.+|..+..   +-...|++.|
T Consensus        89 ~m------~~DDaadll~~L~~~~~~~iL~~l~~---~~r~~i~~lL  126 (130)
T d2ouxa1          89 EM------YTDNAVDLLNMLDKSQKAKYLSLLSS---EEAGEIKELL  126 (130)
T ss_dssp             TS------CHHHHHHHHHHSCHHHHHHHHHTSCH---HHHHHHHHHT
T ss_pred             HC------CHHHHHHHHHHCCHHHHHHHHHCCCH---HHHHHHHHHC
T ss_conf             76------86879999997999999999985999---9999999984


No 5  
>d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=97.16  E-value=0.00019  Score=46.03  Aligned_cols=101  Identities=20%  Similarity=0.328  Sum_probs=61.1

Q ss_pred             HHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             74199899999984038647889999578889999998379899999999984048999899999999999972234421
Q gi|254780689|r  128 LKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEMLPQSNSN  207 (345)
Q Consensus       128 L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~ev~~~ie~~L~~~l~~~~~~  207 (345)
                      |..-+...+..+|..=||.-||-+|..|+++....++..+|.+...+|..      .++++....+-+.+          
T Consensus         7 l~~~~~~~l~~~l~~~hpaDiA~~l~~L~~~~r~~l~~~l~~~~~aev~~------~L~~~~~~~il~~l----------   70 (125)
T d2yvxa1           7 LQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVLS------HLSPEEQAEYLKTL----------   70 (125)
T ss_dssp             TSSCCSHHHHTTTTTSCHHHHHHTTTTSCTTHHHHHTTTSCHHHHHHHHH------TSCHHHHHHTTSSS----------
T ss_pred             HHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH------HCCHHHHHHHHHHC----------
T ss_conf             78789999999988399999999998299999999982299888899999------67999999999707----------


Q ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2363789999950177577999999999865999999997
Q gi|254780689|r  208 TSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRP  247 (345)
Q Consensus       208 ~~~G~~~vA~Iln~l~~~~~~~iL~~L~~~d~~la~~Ir~  247 (345)
                         +.+.++++++.|+.+....+|+.|....+..+.+|-+
T Consensus        71 ---~~~~~~~~l~~m~~DD~adll~~L~~e~~~~~~~iL~  107 (125)
T d2yvxa1          71 ---PPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKD  107 (125)
T ss_dssp             ---CHHHHHHHTTSSCHHHHHHHHHHHHTTCHHHHHHHGG
T ss_pred             ---CHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             ---8999999998789457999999788877999999998


No 6  
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=96.68  E-value=0.02  Score=32.79  Aligned_cols=80  Identities=23%  Similarity=0.296  Sum_probs=45.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
Q ss_conf             99976114979999997544113445675678974199899999984038647889999578889999998379899999
Q gi|254780689|r   95 ESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHAD  174 (345)
Q Consensus        95 ~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~e  174 (345)
                      +..+-..++++.+..++..++  .+ ...-.+.+..++++.++.++..=+|--+|-+|..|+++.+.+||..++++.|.+
T Consensus        45 r~~l~~~l~~~~~a~vl~~l~--~~-~~~~~~il~~l~~~~~a~il~~m~~DDaadll~~L~~~~~~~iL~~l~~~~r~~  121 (130)
T d2ouxa1          45 RQHLYNYLSPKELADMFDVIE--ED-NENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGE  121 (130)
T ss_dssp             HHHHHHHSCHHHHHHHHTTSC--TT-SSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHC--CH-HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH
T ss_conf             999999852087899999811--10-999999986699999999998768687999999799999999998599999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780689|r  175 IMK  177 (345)
Q Consensus       175 v~~  177 (345)
                      |-.
T Consensus       122 i~~  124 (130)
T d2ouxa1         122 IKE  124 (130)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 7  
>d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=96.19  E-value=0.0031  Score=38.05  Aligned_cols=53  Identities=19%  Similarity=0.319  Sum_probs=32.3

Q ss_pred             HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             67897419989999998403864788999957888999999837989999999
Q gi|254780689|r  124 IWDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIM  176 (345)
Q Consensus       124 ~~~~L~~~~~~~La~~L~~EhPQtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~  176 (345)
                      .-+.|..+.|..+|.+|..=+|+-...++..++++.++.|+..|+++.|..++
T Consensus        15 l~~~l~~~hpaDiA~~l~~L~~~~r~~l~~~l~~~~~aev~~~L~~~~~~~il   67 (125)
T d2yvxa1          15 LREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYL   67 (125)
T ss_dssp             HHTTTTTSCHHHHHHTTTTSCTTHHHHHTTTSCHHHHHHHHHTSCHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH
T ss_conf             99998839999999999829999999998229988889999967999999999


No 8  
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=56.47  E-value=2.8  Score=18.54  Aligned_cols=40  Identities=18%  Similarity=0.328  Sum_probs=15.6

Q ss_pred             CCHHHHHHHHHCCHHHHHHHH----HHHHHCCCCCHHHHHHHHHHH
Q ss_conf             814689998519999999999----998613899989999999999
Q gi|254780689|r   36 EKQVSGKLLRHFTHAELKEIV----ASAKLLPEISPEELEDIIDEF   77 (345)
Q Consensus        36 Gee~Aa~ilk~l~~~Ei~~i~----~~m~~l~~i~~~~~~~vl~EF   77 (345)
                      |+..|..+++||+.  ++.+.    .++..++.|++...+.+.+-|
T Consensus        22 G~~~a~~L~~~F~s--~~~l~~As~eeL~~v~GIG~~~A~~I~~~~   65 (70)
T d2bgwa1          22 GRRTAERILERFGS--LERFFTASKAEISKVEGIGEKRAEEIKKIL   65 (70)
T ss_dssp             CHHHHHHHHHHHSS--HHHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCC--HHHHHHCCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             79999999998298--899988699999757998999999999998


No 9  
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=50.21  E-value=6.1  Score=16.29  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=27.1

Q ss_pred             HCCHHHHHHHHHCCHHHHHHHHH----HHHHCCCCCHHHHHHHHHHHH
Q ss_conf             38146899985199999999999----986138999899999999999
Q gi|254780689|r   35 MEKQVSGKLLRHFTHAELKEIVA----SAKLLPEISPEELEDIIDEFE   78 (345)
Q Consensus        35 LGee~Aa~ilk~l~~~Ei~~i~~----~m~~l~~i~~~~~~~vl~EF~   78 (345)
                      +|+..|..+++||..  ++.|..    +...++.|.+...+.|.+-|+
T Consensus        10 VG~~~a~~L~~~F~s--~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~   55 (56)
T d1kfta_          10 VGPKRRQMLLKYMGG--LQGLRNASVEEIAKVPGISQGLAEKIFWSLK   55 (56)
T ss_dssp             CSSSHHHHHHHHHSC--HHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             009999999999399--9999986499998169979999999999876


No 10 
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=42.77  E-value=5.9  Score=16.40  Aligned_cols=18  Identities=22%  Similarity=0.444  Sum_probs=8.8

Q ss_pred             HHCCCCCHHHHHHHHHHH
Q ss_conf             613899989999999999
Q gi|254780689|r   60 KLLPEISPEELEDIIDEF   77 (345)
Q Consensus        60 ~~l~~i~~~~~~~vl~EF   77 (345)
                      ..++.|.+.....+++.|
T Consensus        13 ~~I~gIG~~~a~~L~~~f   30 (68)
T d1x2ia1          13 EGLPHVSATLARRLLKHF   30 (68)
T ss_dssp             TTSTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHC
T ss_conf             189996899999999974


No 11 
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=36.85  E-value=10  Score=14.84  Aligned_cols=50  Identities=18%  Similarity=0.303  Sum_probs=38.4

Q ss_pred             HHCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             83814689998519999999999-----998613899989999999999999851
Q gi|254780689|r   34 AMEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDEFESQFIA   83 (345)
Q Consensus        34 ~LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~EF~~~~~~   83 (345)
                      .+|+..|-.+|..|+++++.+..     ....+++.|.+...+.++-|....+..
T Consensus        16 GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eLk~K~~~   70 (78)
T d1cuka2          16 GVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKG   70 (78)
T ss_dssp             SCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8019999999984899999999980688871229997899999999999999985


No 12 
>d1ev7a_ c.52.1.9 (A:) Restriction endonuclease NaeI {Nocardia aerocolonigenes [TaxId: 68170]}
Probab=35.18  E-value=2.5  Score=18.84  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHCC--------HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHHHH-------HHHHCCCEECCC
Q ss_conf             3889899999996100--------899999999985005899989999--99999999999-------999869795188
Q gi|254780689|r  280 HGTSIETQNAILHCLS--------NRQRKIIEENIVLNDSSIAPREVA--MARRSIVQEAI-------SLLKTNKIELSN  342 (345)
Q Consensus       280 kga~~e~~e~il~nmS--------~Ra~~~l~eel~~~~g~v~~~dve--~Aq~~I~~~~r-------~L~~~G~I~l~~  342 (345)
                      ...++..+++||+.=|        +|.++.++.=   ..-||....|+  +.|++.+..+|       -|+.+|-|.|+.
T Consensus       166 l~lp~~~r~~Ifa~~s~~gn~~G~~R~aeLFR~~---qg~pI~r~vi~tVa~Q~D~mrRVR~~ggaR~~L~~EGIliL~g  242 (302)
T d1ev7a_         166 LHIPGDVRDQIFSAKSSRGNQHGQARVNELFRRV---HGRLIGRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIILGH  242 (302)
T ss_dssp             GSSCHHHHHHHHCCCC----CHHHHHHHHHHHHC---CSSEECHHHHHHHHCSSCTGGGTSSSSSSSSSSGGGTEEEECS
T ss_pred             HCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEECC
T ss_conf             5199889999856765344530479999999998---3871768999999851567777633784566524165799737


No 13 
>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]}
Probab=30.97  E-value=13  Score=14.23  Aligned_cols=28  Identities=14%  Similarity=0.058  Sum_probs=13.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0177577999999999865999999997
Q gi|254780689|r  220 NELEKPQVDKLLTSLQEVSKEAFDKVRP  247 (345)
Q Consensus       220 n~l~~~~~~~iL~~L~~~d~~la~~Ir~  247 (345)
                      |.+.-.....++.+|.+.||..+..+.+
T Consensus        16 ~yfTy~AvrvVl~Ql~e~np~~~~wL~~   43 (115)
T d2peoa1          16 SYLTYQALRTVLAQLGETNPPLALWLHN   43 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9999999999999996259188999999


No 14 
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=27.15  E-value=15  Score=13.80  Aligned_cols=43  Identities=16%  Similarity=0.084  Sum_probs=17.2

Q ss_pred             HCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHHH
Q ss_conf             3814689998519999999999-----998613899989999999999
Q gi|254780689|r   35 MEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDEF   77 (345)
Q Consensus        35 LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~EF   77 (345)
                      +|+..|-.+|..++.+|+.+..     ...++++.|.+...+.++-|.
T Consensus        18 IGpk~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eL   65 (73)
T d1ixra1          18 VGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALEL   65 (73)
T ss_dssp             CCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             079999999987368899999980689986529997799999999999


No 15 
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.27  E-value=15  Score=13.70  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=21.3

Q ss_pred             HHHHHCCHHHHHHHHHHHHHC-C--------CCCHHHHHHHHHHHHH
Q ss_conf             999837989999999998404-8--------9998999999999999
Q gi|254780689|r  162 SVLLRFPNKIHADIMKRTVNL-P--------KISPYIQKTIEKCIVE  199 (345)
Q Consensus       162 ~VL~~Lp~e~r~ev~~Ria~l-~--------~v~~ev~~~ie~~L~~  199 (345)
                      .+....|++.|..+. |+..+ .        -.++++++.|+..|..
T Consensus        92 ~~y~~~~~~~r~kl~-rll~iW~~r~~~~~~vFp~~~l~~ie~~L~~  137 (144)
T d1szaa_          92 RTYLLVDNTTRTKLI-NMFKLWLNPNDTGLPLFEGSALEKIEQFLIK  137 (144)
T ss_dssp             HHHTTSCHHHHHHHH-HHHHHHSSGGGCSSCSSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHH-HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             999829999999999-9999985668888688999999999999987


No 16 
>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase {Bacteriophage PHI-6 [TaxId: 10879]}
Probab=23.59  E-value=17  Score=13.40  Aligned_cols=54  Identities=20%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             HHHHHHHHCCCHHHHHCCCHHHHHHHH-----------HCCCHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf             999999741578998509978999998-----------3098889999853889899999996100
Q gi|254780689|r  241 AFDKVRPKVFLFDDLITLSSHDLSIVF-----------NNISLEVLGKALHGTSIETQNAILHCLS  295 (345)
Q Consensus       241 la~~Ir~~mF~FeDl~~l~~~~l~~ll-----------~evd~~~l~~ALkga~~e~~e~il~nmS  295 (345)
                      +...| .+|-.|+++..|.+-++..|.           .+|+.+++-+++.|.+.++.|.||.+.-
T Consensus       598 l~~~~-~~~~~~~~~~~l~~~d~~vL~DP~km~~kwt~~eI~~~V~e~v~~~l~~~~~e~~~~sv~  662 (664)
T d1hhsa_         598 LSRYV-ASMARQAGLAELTPIDLEVLADPNKLQYKWTEADVSANIHEVLMHGVSVEKTERFLRSVM  662 (664)
T ss_dssp             HHTTC-TTSCTTCCSTTCCHHHHHHHHCGGGGGTTCCGGGSCHHHHHHHEEEECHHHHHHHHHHHS
T ss_pred             HHHHH-HCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             99987-503333332336712255624831532117766518789999984355999999988415


No 17 
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=23.29  E-value=17  Score=13.33  Aligned_cols=42  Identities=24%  Similarity=0.267  Sum_probs=17.7

Q ss_pred             HCCHHHHHHHHHCCHHHHHHHH-----HHHHHCCCCCHHHHHHHHHH
Q ss_conf             3814689998519999999999-----99861389998999999999
Q gi|254780689|r   35 MEKQVSGKLLRHFTHAELKEIV-----ASAKLLPEISPEELEDIIDE   76 (345)
Q Consensus        35 LGee~Aa~ilk~l~~~Ei~~i~-----~~m~~l~~i~~~~~~~vl~E   76 (345)
                      +|+..|-.+|..++++++.+..     ....+++.|.+...+.++-|
T Consensus        17 IGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~e   63 (71)
T d1bvsa2          17 VGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRGAERIVLE   63 (71)
T ss_dssp             CCHHHHHHHHHHSCHHHHHHHTTTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf             17999999998499999999998179888431999779999999999


No 18 
>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=22.07  E-value=18  Score=13.18  Aligned_cols=92  Identities=14%  Similarity=0.141  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCH---HHHHHHHHCCCH
Q ss_conf             99999999999985104566534889999761149799999975441134456756789741998---999999840386
Q gi|254780689|r   69 ELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDP---GVIADFLSKEHP  145 (345)
Q Consensus        69 ~~~~vl~EF~~~~~~~~~~~g~~~~~~~lL~~al~~d~a~~ll~~~~~~~~~~~~~~~~L~~~~~---~~La~~L~~EhP  145 (345)
                      .++.++..|......+....           ......+++.+..+..       ..++.|...++   +.|..+|.+++|
T Consensus         8 ~~~~Lv~~F~~~~i~q~~A~-----------~~~d~~~~NR~~~kl~-------~~~~eLk~~~g~~R~aLl~Ll~h~n~   69 (121)
T d2i9ca1           8 TTQDLVALFAKVTVEQDDAL-----------LGNQISRFNRLFGVMA-------EIADELKARDGDQRTALLSLFEYPNM   69 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-----------HTTCHHHHHHHHHHHH-------HHHHHHHHSTTCGGGGGGGGGGSSCH
T ss_pred             CHHHHHHHHHHHHHHHHHHH-----------HHCCHHHHHHHHHHHH-------HHHHHHHHCCCCHHHHHHHHHHCCCH
T ss_conf             59999999999999999999-----------8153789999999999-------99999985586278999999879889


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             478899995788899999983798999999999840489998
Q gi|254780689|r  146 QTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISP  187 (345)
Q Consensus       146 QtiAlILs~L~~~~Aa~VL~~Lp~e~r~ev~~Ria~l~~v~~  187 (345)
                      |+--         .||.-+..+.++....|+.+|+..+..+-
T Consensus        70 ~VRl---------~AA~~tL~~~p~~A~~vL~~ia~~~~~~~  102 (121)
T d2i9ca1          70 QVRL---------QAAKLTLAVAPVKAREQLEAIVSSKWFPQ  102 (121)
T ss_dssp             HHHH---------HHHHTTTTTCHHHHHHHHHHHHHHTCTTH
T ss_pred             HHHH---------HHHHHHHHCCHHHHHHHHHHHHHCCCCCC
T ss_conf             9999---------99999984186999999999985776776


Done!