RPSBLAST alignment for GI: 254780689 and conserved domain: TIGR00207

>gnl|CDD|161765 TIGR00207, fliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. Length = 338
 Score =  121 bits (304), Expect = 4e-28
 Identities = 81/320 (25%), Positives = 166/320 (51%), Gaps = 5/320 (1%)

Query: 22  LTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQF 81
           LT K KA  +L+++ +  S ++ +H +  E++ + A    + +I  ++ +D+++EFE   
Sbjct: 9   LTGKQKAAILLISIGEDRSAEVFKHLSQEEIETLSAEIANVTQIDNQQKDDVLEEFEQIA 68

Query: 82  IAGIGLTENSKN-IESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFL 140
            A   +     +    +LE+ L + +   +LN    S +      + L++ +P  IADF+
Sbjct: 69  EAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSLQTAPGF-EFLRKAEPQQIADFI 127

Query: 141 SKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEM 200
            +EHPQT A +LS + P+  A +L  FP ++ A++ +R   + + SP +   +E+ +   
Sbjct: 128 QQEHPQTIALILSHLDPAQAADILSLFPEEVQAEVARRIATMGRTSPEVVAEVERVLEGK 187

Query: 201 LPQSNSNTST--GPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITL 258
           L   NS+ +   G   VA +IN +++     ++TSL+E   E  ++++ ++F+F+D++ L
Sbjct: 188 LDSLNSDYTKMGGVRAVAEIINLMDRKTEKTIITSLEEFDPELAEEIKKEMFVFEDIVDL 247

Query: 259 SSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREV 318
               +  V   +  E L  AL G     +   L+ +S R  +I++E++      +  ++V
Sbjct: 248 DDRSIQRVLREVDSEDLLLALKGAEQPLREKFLNNMSQRAAEILKEDME-FLGPVRLKDV 306

Query: 319 AMARRSIVQEAISLLKTNKI 338
             A++ IV     L +T +I
Sbjct: 307 EEAQKKIVSIVRKLEETGEI 326