RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780689|ref|YP_003065102.1| flagellar motor switch protein
G [Candidatus Liberibacter asiaticus str. psy62]
         (345 letters)



>gnl|CDD|180201 PRK05686, fliG, flagellar motor switch protein G; Validated.
          Length = 339

 Score =  304 bits (780), Expect = 3e-83
 Identities = 95/334 (28%), Positives = 175/334 (52%), Gaps = 7/334 (2%)

Query: 11  KNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEEL 70
                +     LT  +KA  +LLA+ ++ + K+L+H T  E++++ A+   L  +SPE++
Sbjct: 1   DAEKAKADLDELTGPEKAAILLLALGEEAAAKVLKHLTEEEVQKLSAAMANLRNVSPEQV 60

Query: 71  EDIIDEFESQFIAGIGLTENSKN-IESILEEGLEQNELEKLLNKSDISQENNNSIWDHLK 129
           E +++EFE +F AG  +     +   S+LE+ L + + + +L +   S     S +D L+
Sbjct: 61  EAVLEEFEDEFEAGAYILMGGIDYARSLLEKALGEEKADSILERILESLGT--SGFDFLR 118

Query: 130 ETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYI 189
           + DP  +A+F+  EHPQT A +LS + P   A +L   P ++ AD+M R   L  +SP  
Sbjct: 119 KMDPQQLANFIRNEHPQTIALILSYLKPDQAAEILSLLPEELRADVMMRIATLEGVSPEA 178

Query: 190 QKTIEKCIVEML---PQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVR 246
            K +E+ + + L     ++     G + VA ++N L++     +L SL+E   E  +K++
Sbjct: 179 LKEVEEVLEKKLSSMANADRTKMGGVKTVAEILNNLDRQTEKTILESLEEEDPELAEKIK 238

Query: 247 PKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENI 306
             +F+F+DL+ L    +  +   +  +VL  AL G S E +   L  +S R  +++ E++
Sbjct: 239 DLMFVFEDLVDLDDRSIQRLLREVDNDVLALALKGASEELREKFLSNMSKRAAEMLREDL 298

Query: 307 VLNDSSIAPREVAMARRSIVQEAISLLKTNKIEL 340
                 +   +V  A++ IVQ A  L +  +I L
Sbjct: 299 E-ALGPVRLSDVEEAQKKIVQIARRLAEAGEIVL 331


>gnl|CDD|161765 TIGR00207, fliG, flagellar motor switch protein FliG.  The fliG
           protein along with fliM and fliN interact to form the
           switch complex of the bacterial flagellar motor located
           at the base of the basal body. This complex interacts
           with chemotaxis proteins (eg CHEY). In addition the
           complex interacts with other components of the motor
           that determine the direction of flagellar rotation. The
           model contains putative members of the fliG family at
           scores of less than 100 from Agrobacterium radiobacter
           and Sinorhizobium meliloti as well as fliG-like genes
           from treponema pallidum and Borrelia burgdorferi. That
           is why the suggested cutoff is set at 20 but was set at
           100 to construct the family.
          Length = 338

 Score =  121 bits (304), Expect = 4e-28
 Identities = 81/320 (25%), Positives = 166/320 (51%), Gaps = 5/320 (1%)

Query: 22  LTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQF 81
           LT K KA  +L+++ +  S ++ +H +  E++ + A    + +I  ++ +D+++EFE   
Sbjct: 9   LTGKQKAAILLISIGEDRSAEVFKHLSQEEIETLSAEIANVTQIDNQQKDDVLEEFEQIA 68

Query: 82  IAGIGLTENSKN-IESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFL 140
            A   +     +    +LE+ L + +   +LN    S +      + L++ +P  IADF+
Sbjct: 69  EAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSLQTAPGF-EFLRKAEPQQIADFI 127

Query: 141 SKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVEM 200
            +EHPQT A +LS + P+  A +L  FP ++ A++ +R   + + SP +   +E+ +   
Sbjct: 128 QQEHPQTIALILSHLDPAQAADILSLFPEEVQAEVARRIATMGRTSPEVVAEVERVLEGK 187

Query: 201 LPQSNSNTST--GPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITL 258
           L   NS+ +   G   VA +IN +++     ++TSL+E   E  ++++ ++F+F+D++ L
Sbjct: 188 LDSLNSDYTKMGGVRAVAEIINLMDRKTEKTIITSLEEFDPELAEEIKKEMFVFEDIVDL 247

Query: 259 SSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREV 318
               +  V   +  E L  AL G     +   L+ +S R  +I++E++      +  ++V
Sbjct: 248 DDRSIQRVLREVDSEDLLLALKGAEQPLREKFLNNMSQRAAEILKEDME-FLGPVRLKDV 306

Query: 319 AMARRSIVQEAISLLKTNKI 338
             A++ IV     L +T +I
Sbjct: 307 EEAQKKIVSIVRKLEETGEI 326


>gnl|CDD|180874 PRK07194, fliG, flagellar motor switch protein G; Reviewed.
          Length = 334

 Score = 97.4 bits (243), Expect = 4e-21
 Identities = 70/320 (21%), Positives = 143/320 (44%), Gaps = 10/320 (3%)

Query: 26  DKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGI 85
           ++A  +LL+M ++ +  +++  +  E++ +      L  I  ++   ++  F   +    
Sbjct: 11  EQAAILLLSMGEEAAAMVMQQLSREEVQRLSQKMARLSGIKVDQARQVLQRFFDDYREQS 70

Query: 86  GLTENSKN-IESILEEGLEQNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEH 144
           G+   S++ ++  L + L  +  + L+N   I  +        L+  DP  +A  ++ EH
Sbjct: 71  GINGASRSYLQRTLNKALGGDIAKSLIN--SIYGDEIRHRMQRLQWVDPQQLARLIANEH 128

Query: 145 PQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPKISPYI----QKTIEKCIVEM 200
            Q  A  L+ +PP   A+VL   P     DI+ R   L  +   +     + IE+C + +
Sbjct: 129 LQMQAVFLAFLPPESAAAVLKYLPEDRQDDILYRIAQLDDVDRDVVDELDELIERC-LAV 187

Query: 201 LPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEAFDKVRPKVFLFDDLITLSS 260
           L + +     G ++ A++IN     +  +L+  L+E  +E  +++   ++ F  L   S 
Sbjct: 188 LSEQSHTKVIGVKQAADIINRFPGDR-QQLMEMLKEHDEEVVNEIEDNMYDFFILSRQSE 246

Query: 261 HDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAM 320
             L  + + + +E+   AL GT    + AIL  +  RQ + +E  I      +    V  
Sbjct: 247 ETLQRLMDEVPMELWAVALKGTEPALRQAILRVMPKRQAQALEAQIERL-GPVPLSRVEQ 305

Query: 321 ARRSIVQEAISLLKTNKIEL 340
           AR+ I+     L +  +IEL
Sbjct: 306 ARKEIMALVRELAEAGEIEL 325


>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700).  This
           family contains many hypothetical bacterial proteins and
           two putative membrane proteins.
          Length = 181

 Score = 31.4 bits (72), Expect = 0.35
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 52  LKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEE 100
           L E+ +S K LPE   EE +DI+ ++E  F  G    E  K+ E I++E
Sbjct: 7   LNELESSLKKLPE---EERKDILYDYEEHFYEGE---EEGKSEEEIIKE 49


>gnl|CDD|163200 TIGR03285, methan_mark_14, putative methanogenesis marker protein
           14.  Members of this protein family, to date, are found
           in a completed prokaryotic genome if and only if the
           species is one of the archaeal methanogens. The exact
           function is unknown, but likely is linked to
           methanogenesis or a process closely connected to it.
          Length = 445

 Score = 31.3 bits (71), Expect = 0.37
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 11/103 (10%)

Query: 229 KLLTSLQEVSKEAFDK-VRPKVFL-FDDLITL-------SSHDLSIVFNNISLEVLGKAL 279
             LT L E+ +E ++    P +F   DD++ L        +  L ++    +L + G+A 
Sbjct: 314 SDLTKLTEIGREIYESEGIPTLFAVLDDVMALIAKRLIEQASKLGLIQEKTTLGITGRA- 372

Query: 280 HGTSIETQNAILHCLSNRQRKIIEENIVLNDSSIAPREVAMAR 322
            G +      IL  L N      EEN+V  D  +A     MAR
Sbjct: 373 -GITGYKPELILEYLKNSFLWDKEENVVFVDDGLALGAAVMAR 414


>gnl|CDD|162183 TIGR01063, gyrA, DNA gyrase, A subunit.  This model describes the
           common type II DNA topoisomerase (DNA gyrase). Two
           apparently independently arising families, one in the
           Proteobacteria and one in Gram-positive lineages, are
           both designated toposisomerase IV.
          Length = 800

 Score = 30.7 bits (70), Expect = 0.56
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 12/67 (17%)

Query: 50  AELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNELEK 109
           A+L++I+AS + + EI  EELE+I ++F                   I+ +  E  ++E 
Sbjct: 444 ADLEDILASEERVLEIIREELEEIKEQF------------GDPRRTEIVYDESEDIDIED 491

Query: 110 LLNKSDI 116
           L+ + ++
Sbjct: 492 LIARENV 498


>gnl|CDD|181753 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
          Length = 502

 Score = 30.0 bits (69), Expect = 0.85
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 42  KLLRHFT--HAELKEIVASAKLLPEISPEELEDIIDEFESQFIA 83
           +LL +    HA+L E +   K L +    +L+  I+EF+  F A
Sbjct: 459 ELLAYLRSNHADLLEEIRETKDLSDEIEAKLKAAIEEFKKTFAA 502


>gnl|CDD|180128 PRK05560, PRK05560, DNA gyrase subunit A; Validated.
          Length = 805

 Score = 29.6 bits (68), Expect = 1.2
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 50  AELKEIVASAKLLPEISPEELEDIIDEF 77
           A+LK+I+AS + L EI  EEL +I ++F
Sbjct: 447 ADLKDILASPERLLEIIKEELLEIKEKF 474


>gnl|CDD|181200 PRK08025, PRK08025, lipid A biosynthesis palmitoleoyl
          acyltransferase; Reviewed.
          Length = 305

 Score = 29.3 bits (66), Expect = 1.5
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 13/55 (23%)

Query: 41 GKLLRHFTHAELKEIVASAK-----LLPEISPEELEDIIDE-FESQFIAGIGLTE 89
          G++ R F    LK   + A+       P++S EE E +I E F S    G+ L E
Sbjct: 45 GRMSRPF----LKRRESIARKNLELCFPQMSAEEREKMIAENFRS---LGMALLE 92


>gnl|CDD|178078 PLN02459, PLN02459, probable adenylate kinase.
          Length = 261

 Score = 29.0 bits (65), Expect = 1.6
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 50  AELKEIVASAKLLPE-----ISPEELEDIIDEFESQFI 82
           A+LKEIV   KL+P+     +  + LE   +E ES FI
Sbjct: 76  AQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFI 113


>gnl|CDD|150206 pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family.  Cas
           are a group of proteins associated with clustered
           regularly interspaced short palindromic repeats - CRISPS
           - of DNA found in nearly half of bacterial and archaeal
           genomes. The family describes Cas proteins of about 400
           residues that include the motif [VIL]-D-x-[ST]-H-[GS].
           The CRISPR and associated proteins are thought to be
           involved in the evolution of host resistance. The exact
           molecular function of this family is currently unknown.
          Length = 387

 Score = 28.5 bits (64), Expect = 2.2
 Identities = 14/69 (20%), Positives = 30/69 (43%)

Query: 47  FTHAELKEIVASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIESILEEGLEQNE 106
              A    I        EIS EELE +++ F  + +    +      I+++ E   ++ +
Sbjct: 297 ELRALFINIYKLFLEKSEISLEELEKLLELFFEREVISKIIKNELSKIKNLAENIKDRTK 356

Query: 107 LEKLLNKSD 115
           L + ++ S+
Sbjct: 357 LSEYIDNSE 365


>gnl|CDD|183415 PRK12297, obgE, GTPase CgtA; Reviewed.
          Length = 424

 Score = 28.5 bits (65), Expect = 2.7
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 19/98 (19%)

Query: 48  THAELKEIV-ASAKLLPEISPEELEDIIDEFESQFIAGIGLTENSKNIE-SILEEG---L 102
           T   L E++ A A+LL E     LE+   E E          E  K+   +  E+G   +
Sbjct: 311 TGQGLDELLYAVAELLEETPEFPLEEEEVEEEVY----YKFEEEEKDFTITRDEDGVFVV 366

Query: 103 EQNELEKLLNKSDISQENN----------NSIWDHLKE 130
              ++E+L   ++ +++ +            + D L+E
Sbjct: 367 SGEKIERLFKMTNFNRDESLRRFARQLRKMGVDDALRE 404


>gnl|CDD|179068 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta';
           Provisional.
          Length = 1156

 Score = 28.5 bits (65), Expect = 2.8
 Identities = 6/22 (27%), Positives = 15/22 (68%)

Query: 65  ISPEELEDIIDEFESQFIAGIG 86
           ++ EE  + ++E+  +F+A +G
Sbjct: 150 LTEEEYREALEEYGDEFVAKMG 171


>gnl|CDD|152877 pfam12443, AKNA, AT-hook-containing transcription factor.  This
           domain family is found in eukaryotes, and is
           approximately 110 amino acids in length. This family
           contains a transcription factor which regulates the
           expression of the costimulatory molecules on
           lymphocytes.
          Length = 106

 Score = 28.3 bits (63), Expect = 2.8
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 194 EKCIVEMLPQSNSNTSTGPEKVANLINELE------KPQVDKLLTSLQEVSKE 240
            K   E+ P      S G   +   I ELE        Q+++L   + +  KE
Sbjct: 22  LKACRELHPTPQLAGSKGSPYIFQKIRELEAEIYKLGEQLEELKEHVDQTQKE 74


>gnl|CDD|181589 PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA
           acyltransferase; Validated.
          Length = 314

 Score = 27.9 bits (63), Expect = 4.5
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 62  LPEISPEELEDIIDE-FES--QFIAGIG--LTENSKNIES--------ILEEGLEQNE 106
            PE S  E E IIDE F +  Q +  +      + K+++         ILEE     E
Sbjct: 74  FPEKSEAEREAIIDEMFATAPQAMLMMAELALRSPKHLQRRVEWHGLEILEEARANGE 131


>gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p;
           Reviewed.
          Length = 300

 Score = 27.5 bits (62), Expect = 5.0
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 53  KEIVASAKLLPEISPEELEDIIDEFE 78
           KE V    L  ++  E++  +  EF 
Sbjct: 84  KEYVCVMHLHGDVPEEDIRKVFKEFT 109


>gnl|CDD|180000 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
          Length = 652

 Score = 27.3 bits (62), Expect = 5.4
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 185 ISPYIQKTIEKCIVEMLPQSNSNTSTGPEKVANLINELEK 224
           I+P   KTI+K I ++L           +++  LI ELEK
Sbjct: 584 ITP---KTIKKKIRDILDSVYKKDKLSKKELEKLIKELEK 620


>gnl|CDD|149898 pfam08974, DUF1877, Domain of unknown function (DUF1877).  This
           domain is found in a set of hypothetical bacterial
           proteins.
          Length = 165

 Score = 27.3 bits (61), Expect = 6.2
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 19  PVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEI--SPEELEDIIDE 76
           P  L   ++   I  A+E      L   F   E KE    A++ P+I  S EE ++I +E
Sbjct: 84  PARLITAEEVKEIAEALESLDFDDLRARFDAEEFKE----AEIYPDIWDSEEEKDEIFEE 139

Query: 77  FESQF 81
               F
Sbjct: 140 LLEYF 144


>gnl|CDD|184842 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 233

 Score = 27.1 bits (60), Expect = 6.4
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 36  EKQVSGKLLRHFTHAELKEIVASAKLLPEISPEELEDIIDEF 77
           E ++S  LL   ++AEL     +  L P+ +P++LE+II +F
Sbjct: 184 EMRLSNFLLWQSSYAEL---FFTPILWPDFTPKDLENIISDF 222


>gnl|CDD|177801 PLN00220, PLN00220, tubulin beta chain; Provisional.
          Length = 447

 Score = 27.1 bits (60), Expect = 6.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 160 GASVLLRFPNKIHADIMKRTVNL 182
           G +  LRFP ++++D+ K  VNL
Sbjct: 235 GVTCCLRFPGQLNSDLRKLAVNL 257


>gnl|CDD|180055 PRK05398, PRK05398, formyl-coenzyme A transferase; Provisional.
          Length = 416

 Score = 27.2 bits (61), Expect = 6.9
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 15/58 (25%)

Query: 87  LTENSKNIESILEEGLEQNELEKLLNKSDISQEN--------NNSIWDHLKETDPGVI 136
           +T ++K       EG E   LEKL+ ++D+  EN            W+ ++E +P +I
Sbjct: 70  ITLDTKT-----PEGKEV--LEKLIREADVLVENFGPGALDRMGFTWERIQEINPRLI 120


>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
          Length = 407

 Score = 26.9 bits (60), Expect = 7.1
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 165 LRFPNKIHADIMKRTVNLPKISPYIQKTIEKCIVE 199
               N+     MK     P +  +I++ ++K I E
Sbjct: 1   QTIDNETQYINMKEKHKNPPLPDFIEERLDKYIEE 35


>gnl|CDD|164878 PHA01971, PHA01971, hypothetical protein.
          Length = 123

 Score = 26.8 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 53 KEIVASAKLLPEISPEELEDII 74
          KEI A     P I+P+ +E II
Sbjct: 8  KEIQAKGLTAPRITPQHIESII 29


>gnl|CDD|128479 smart00182, CULLIN, Cullin. 
          Length = 142

 Score = 26.9 bits (60), Expect = 8.2
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 89  ENSKNIESIL--EEGLE-QNELEKLLNKSDISQENNNSIWDHLKETDPGVIADFLSKEHP 145
           +  +N+ + L  E G E  ++LE++     +S++ N S  D L+      I D       
Sbjct: 29  DAEENMITKLKQECGYEFTSKLERMFRDISLSKDLNQSFKDMLENNSNKPIIDL------ 82

Query: 146 QTTAYVLS 153
                VL+
Sbjct: 83  --NVRVLT 88


>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
          Length = 623

 Score = 26.7 bits (59), Expect = 8.3
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 83  AGIGLTENSKNIESILEEGLEQNELEKLLNKSDIS-----QENNN-SIWDHLKETDPGVI 136
             I    N+ N      E L Q+ L     + D+S       N N S+W H  E D  + 
Sbjct: 238 NVIKKASNAPNF---YPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSIT 294

Query: 137 A 137
           A
Sbjct: 295 A 295


>gnl|CDD|181710 PRK09225, PRK09225, threonine synthase; Validated.
          Length = 462

 Score = 26.7 bits (60), Expect = 9.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 44 LRHFTHAELKEIVASAKLLPEISPEELEDIIDEFESQF 81
          L   ++AEL   + SA +  +I  ++L+ II    + F
Sbjct: 46 LLGLSYAELAFEILSAFVGDDIPEDDLKAIIARAYTTF 83


>gnl|CDD|178561 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
            magnesium ion binding  / thiamin pyrophosphate binding.
          Length = 1655

 Score = 26.7 bits (59), Expect = 9.1
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 19/76 (25%)

Query: 289  AILHCLSNRQR----KII-----EENIV----------LNDSSIAPREVAMARRSIVQEA 329
            AIL+ ++ R       I+     +EN            L DS+ +P EVA   R +V+E 
Sbjct: 1046 AILNAIAVRHGSSLLNILDPYQKDENGSEQSHSVQICALLDSNGSPLEVAYVARKLVEEG 1105

Query: 330  ISLLKTNKIELSNPIK 345
             S +K       +PI+
Sbjct: 1106 FSAIKLKVGRRVSPIQ 1121


>gnl|CDD|150721 pfam10079, DUF2317, Uncharacterized protein conserved in bacteria
           (DUF2317).  Members of this family of hypothetical
           bacterial proteins have no known function.
          Length = 541

 Score = 26.8 bits (60), Expect = 9.2
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 11/67 (16%)

Query: 47  FTHAELKEIVASAKLLPE-------ISPEELEDIIDEFESQFIAGIGLTENSKNIESILE 99
           F   +LK++        E       +  E L ++++EF ++     G TE ++ +  +LE
Sbjct: 147 FGGGKLKKLKWETPRRKEASGAVGRLDTEGLREVLEEFFAEL----GETEYTEELLELLE 202

Query: 100 EGLEQNE 106
           E   ++E
Sbjct: 203 EAYLESE 209


>gnl|CDD|181974 PRK09590, celB, cellobiose phosphotransferase system IIB component;
           Reviewed.
          Length = 104

 Score = 26.7 bits (59), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 195 KCIVEMLPQSNSNTSTGPEKVANLINE 221
           K +V++ PQ+      G EK+A LI E
Sbjct: 76  KPVVQIPPQAYIPIPMGIEKMAKLILE 102


>gnl|CDD|162687 TIGR02076, pyrH_arch, uridylate kinase, putative.  This family
           consists of the archaeal and spirochete proteins most
           closely related to bacterial uridylate kinases
           (TIGR02075), an enzyme involved in pyrimidine
           biosynthesis. Members are likely, but not known, to be
           functionally equivalent to their bacterial counterparts.
           However, substantial sequence differences suggest that
           regulatory mechanisms may be different; the bacterial
           form is allosterically regulated by GTP.
          Length = 221

 Score = 26.5 bits (59), Expect = 9.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 57  ASAKLLPEISPEELEDII 74
             AK   +++PEEL +I+
Sbjct: 151 PDAKKFDKLTPEELVEIV 168


>gnl|CDD|162031 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family.  This
           family, related to bacterial glutathione synthetases,
           contains at least two different alpha-L-glutamate
           ligases. One is RimK, as in E. coli, which adds
           additional Glu residues to the native Glu-Glu C-terminus
           of ribosomal protein S6, but not to Lys-Glu mutants.
           Most species with a member of this subfamily lack an S6
           homolog ending in Glu-Glu, however. Members in
           Methanococcus jannaschii act instead as a
           tetrahydromethanopterin:alpha-l-glutamate ligase
           (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
           (MJ1001).
          Length = 277

 Score = 26.5 bits (59), Expect = 10.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 201 LPQSNSNTSTGPEKVANLINELEKPQVDKLL 231
           LPQ  +  +  PE+   LI E+  P V K +
Sbjct: 101 LPQPRTGLAGSPEEALKLIEEIGFPVVLKPV 131


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.312    0.130    0.346 

Gapped
Lambda     K      H
   0.267   0.0829    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,379,217
Number of extensions: 345817
Number of successful extensions: 927
Number of sequences better than 10.0: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 65
Length of query: 345
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 251
Effective length of database: 3,963,321
Effective search space: 994793571
Effective search space used: 994793571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (25.9 bits)