RPSBLAST alignment of GI: 254780689 and protein with PDBid: 1lkv
>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1 Length = 232
Score = 97.1 bits (241), Expect = 6e-21
Identities = 54/220 (24%), Positives = 111/220 (50%), Gaps = 4/220 (1%)
Query: 125 WDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPK 184
+ +++TDP + +FL EHPQT A VLS + P + A +L P ++ +++KR L +
Sbjct: 5 FSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLER 64
Query: 185 ISPYIQKTIEKCIVEM---LPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEA 241
SP + K IE+ + + + G + A ++N L++ K++ L + + E
Sbjct: 65 TSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPEL 124
Query: 242 FDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKI 301
D++R ++F+F+D++ L + +V + L AL G S E + I +S R +
Sbjct: 125 ADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAAL 184
Query: 302 IEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELS 341
+++ + + ++V A++ I+ L + +I ++
Sbjct: 185 LKDELEY-MGPVRLKDVEEAQQKIINIIRRLEEAGEIVIA 223