RPSBLAST alignment of GI: 254780689 and protein with PDBid: 1lkv

>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1 Length = 232
 Score = 97.1 bits (241), Expect = 6e-21
 Identities = 54/220 (24%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 125 WDHLKETDPGVIADFLSKEHPQTTAYVLSMMPPSIGASVLLRFPNKIHADIMKRTVNLPK 184
           +  +++TDP  + +FL  EHPQT A VLS + P + A +L   P ++  +++KR   L +
Sbjct: 5   FSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLER 64

Query: 185 ISPYIQKTIEKCIVEM---LPQSNSNTSTGPEKVANLINELEKPQVDKLLTSLQEVSKEA 241
            SP + K IE+ + +          +   G +  A ++N L++    K++  L + + E 
Sbjct: 65  TSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPEL 124

Query: 242 FDKVRPKVFLFDDLITLSSHDLSIVFNNISLEVLGKALHGTSIETQNAILHCLSNRQRKI 301
            D++R ++F+F+D++ L    + +V   +    L  AL G S E +  I   +S R   +
Sbjct: 125 ADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAAL 184

Query: 302 IEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELS 341
           +++ +      +  ++V  A++ I+     L +  +I ++
Sbjct: 185 LKDELEY-MGPVRLKDVEEAQQKIINIIRRLEEAGEIVIA 223