HHsearch alignment for GI: 254780690 and conserved domain: COG4792
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=675.25 Aligned_cols=343 Identities=27% Similarity=0.376 Sum_probs=318.5
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 87768665878799999857875133599999999999999999999999999999999720001210497989999999
Q gi|254780690|r 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86 (354)
Q Consensus 7 ~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T Consensus 2 s~EKTeqpTpKKLrDarkkGQV~kS~Eivs~v~~~al~~yf~l~g~~~~~~~~~ll~~~~~~~n~PF~---~Al~~il~~ 78 (349)
T COG4792 2 SSEKTEQPTPKKLRDARKKGQVVKSKEIVSAVQLLALVAYFMLFGDSYFEHLVELLLFTIELLNLPFS---YALRQILGA 78 (349)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHH
T ss_conf 75446799815578788658864289999999999999999985289999999999428998368499---999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999887768785321013712137791016934303320126679999999999999999999999
Q gi|254780690|r 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 (354)
Q Consensus 87 ~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i 166 (354)
T Consensus 79 ll~~~l~~v~pl~~~~~v~tv~s~v~q~Gfl~a~eai~p~~~kINP~~~~K~ifS~rS~vEl~KS~lKV~vLslif~f~l 158 (349)
T COG4792 79 LLEELLYLVLPLLLVVIVATVLSGVLQVGFLFALEAIKPKAEKINPVQNAKRIFSLRSVVELLKSLLKVVVLSLIFWFML 158 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999886610257503568862206853417889739999999999999999999999999
Q ss_pred HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 83215689784089799999999999999999999999999976679999999840699899999975448998999999
Q gi|254780690|r 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 (354)
Q Consensus 167 ~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~ 246 (354)
T Consensus 159 ~~~~~t~~~lp~CG~~C~~~Vv~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKskR 238 (349)
T COG4792 159 HGYANTFLYLPGCGLYCALPVVSFLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKR 238 (349)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHH
T ss_conf 98899986046565006899999999999999999999999999999999999996167789989875036990366789
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf 99999999988986077686998735530788897688888888998076589999999999739978868899999997
Q gi|254780690|r 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 (354)
Q Consensus 247 r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354)
T Consensus 239 Rq~~~Eiqsgsl~~nVkrStviv~nPThiaI~l~Y~~gETplPlVi~k~~daqA~~i~~iAe~~~ipVveni~LAraL~~ 318 (349)
T COG4792 239 RQLHSEIQSGSLANNVKRSTVIVKNPTHIAICLRYKRGETPLPLVIEKGTDAQALQIVKIAEEEGIPVVENIPLARALYR 318 (349)
T ss_pred HHHHHHHHCCCHHHCCCEEEEEEECCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEECCHHHHHHHH
T ss_conf 99998873477432661104897268658999765268898877887267088999999999809970105398999986
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 28898948989999999999999730
Q gi|254780690|r 327 QVPINSAIPPVFYKAVAQLIYKIYHK 352 (354)
Q Consensus 327 ~~~ig~~Ip~~~y~aVA~il~~v~~l 352 (354)
T Consensus 319 d~~~g~~IP~~~fEpvA~lLr~a~~~ 344 (349)
T COG4792 319 DVHVGQYIPEDFFEPVAALLRMAEDL 344 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 01048868389889999999999852