HHsearch alignment for GI: 254780690 and conserved domain: PRK05702

>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=100.00  E-value=0  Score=889.68  Aligned_cols=351  Identities=36%  Similarity=0.557  Sum_probs=339.5

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             99876787768665878799999857875133599999999999999999999999999999999720001210497989
Q gi|254780690|r    1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI   80 (354)
Q Consensus         1 MAe~d~~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   80 (354)
T Consensus         1 Mae~~-~~eKTE~PT~kKL~dARekGqV~kS~el~~a~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~   78 (352)
T PRK05702          1 MAEDS-DQEKTEEPTPKKLEKAREKGQVPRSRELNTAAVLLAGLVGLWFFGGSLARRLAGMLRALFSFDREIAF-DPNDM   78 (352)
T ss_pred             CCCCC-CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHH
T ss_conf             99889-99989999857899999768987668699999999999999999999999999999999835441247-86899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999887768785321013712137791016934303320126679999999999999999
Q gi|254780690|r   81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT  160 (354)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~  160 (354)
T Consensus        79 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~Q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~LvEl~KsllKv~~i~~  158 (352)
T PRK05702         79 LSLFGLLILELLLALLPILLLLVLAALLAPILQGGWLFSGKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGG  158 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHCHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999998527451642478884654972452312088899999999999999999


Q ss_pred             HHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
Q ss_conf             99999983215689784089799999999999999999999999999976679999999840699899999975448998
Q gi|254780690|r  161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP  240 (354)
Q Consensus       161 v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP  240 (354)
T Consensus       159 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP  238 (352)
T PRK05702        159 VAYFVLWSNLDELLSLAALPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEYKQSEGDP  238 (352)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
T ss_conf             99999999999999885389999999999999999999999999999999999999999883899999999998652999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHH
Q ss_conf             99999999999999988986077686998735530788897688888888998076589999999999739978868899
Q gi|254780690|r  241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL  320 (354)
Q Consensus       241 ~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~L  320 (354)
T Consensus       239 ~iK~~~R~~~re~a~~~m~~~V~~A~vVItNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPive~~pL  318 (352)
T PRK05702        239 EVKGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALRIREIAREHNVPIVENPPL  318 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHH
T ss_conf             99999999999999867873388797899999862899887889999998877458699999999999869988747899


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             999997288989489899999999999997302
Q gi|254780690|r  321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       321 AR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk  353 (354)
T Consensus       319 ARaLy~~~~vg~~IP~~ly~aVA~il~~v~~lk  351 (352)
T PRK05702        319 ARALYATVEVGQEIPEELYKAVAEVLAYVYQLK  351 (352)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             999997378999589999999999999999852