HHsearch alignment for GI: 254780690 and conserved domain: PRK05702
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=100.00 E-value=0 Score=889.68 Aligned_cols=351 Identities=36% Similarity=0.557 Sum_probs=339.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99876787768665878799999857875133599999999999999999999999999999999720001210497989
Q gi|254780690|r 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80 (354)
Q Consensus 1 MAe~d~~~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
T Consensus 1 Mae~~-~~eKTE~PT~kKL~dARekGqV~kS~el~~a~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 78 (352)
T PRK05702 1 MAEDS-DQEKTEEPTPKKLEKAREKGQVPRSRELNTAAVLLAGLVGLWFFGGSLARRLAGMLRALFSFDREIAF-DPNDM 78 (352)
T ss_pred CCCCC-CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHH
T ss_conf 99889-99989999857899999768987668699999999999999999999999999999999835441247-86899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999887768785321013712137791016934303320126679999999999999999
Q gi|254780690|r 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~ 160 (354)
T Consensus 79 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~Q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~LvEl~KsllKv~~i~~ 158 (352)
T PRK05702 79 LSLFGLLILELLLALLPILLLLVLAALLAPILQGGWLFSGKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGG 158 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHCHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999998527451642478884654972452312088899999999999999999
Q ss_pred HHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
Q ss_conf 99999983215689784089799999999999999999999999999976679999999840699899999975448998
Q gi|254780690|r 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 (354)
Q Consensus 161 v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP 240 (354)
T Consensus 159 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP 238 (352)
T PRK05702 159 VAYFVLWSNLDELLSLAALPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEYKQSEGDP 238 (352)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
T ss_conf 99999999999999885389999999999999999999999999999999999999999883899999999998652999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHH
Q ss_conf 99999999999999988986077686998735530788897688888888998076589999999999739978868899
Q gi|254780690|r 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 (354)
Q Consensus 241 ~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~L 320 (354)
T Consensus 239 ~iK~~~R~~~re~a~~~m~~~V~~A~vVItNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPive~~pL 318 (352)
T PRK05702 239 EVKGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALRIREIAREHNVPIVENPPL 318 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHH
T ss_conf 99999999999999867873388797899999862899887889999998877458699999999999869988747899
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999997288989489899999999999997302
Q gi|254780690|r 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354)
Q Consensus 321 AR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354)
T Consensus 319 ARaLy~~~~vg~~IP~~ly~aVA~il~~v~~lk 351 (352)
T PRK05702 319 ARALYATVEVGQEIPEELYKAVAEVLAYVYQLK 351 (352)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999997378999589999999999999999852