HHsearch alignment for GI: 254780690 and conserved domain: PRK05702
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=97.50 E-value=0.017 Score=40.22 Aligned_cols=259 Identities=15% Similarity=0.174 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 999999999999999999999999999999972000121049798999999999999999999999999887768785--
Q gi|254780690|r 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-- 112 (354)
Q Consensus 35 ~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~l~-- 112 (354)
T Consensus 38 ~l~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~Q~G~~f 116 (352)
T PRK05702 38 VLLAGLVGLWFFGGSLARRL-AGMLRALFSFDREIAFDPNDMLSLFGLLILELLLALLPILLLLVLAALLAPILQGGWLF 116 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999-99999998354412478689999999999999999999999999999999998527451
Q ss_pred -HHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHH
Q ss_conf -3210137121377--9101693430332012667999999999999999999999983215689784089799999999
Q gi|254780690|r 113 -QRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 (354)
Q Consensus 113 -q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~ 189 (354)
T Consensus 117 s~k~l~pk~~rlNPi~GlKriF---S~k~LvEl--~KsllKv~~i~~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 190 (352)
T PRK05702 117 SGKALKPKFSKLNPLKGLKRMF---SAQGLVEL--LKSLLKVLLVGGVAYFVLWSNL-DELLSLAALPLEAALGHALDLV 190 (352)
T ss_pred CCCCCCCCHHHCCHHHCHHHHC---CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHH
T ss_conf 6424788846549724523120---88899999--9999999999999999999999-9999885389999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH---C--C
Q ss_conf 9999999999999999999766799999998-40699899999975448998999999999999999889860---7--7
Q gi|254780690|r 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---T--S 263 (354)
Q Consensus 190 ~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~---V--~ 263 (354)
T Consensus 191 ~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~~~R~~~re~a~~~m~~~V~~A~vVItNP 270 (352)
T PRK05702 191 LKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEYKQSEGDPEVKGRIRQLQREMARRRMMAAVPKADVVITNP 270 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 99999999999999999999999999988389999999999865299999999999999999867873388797899999
Q ss_pred --------------CCCEEEEC-CCCEEEEEEECCCCCCCCEEEEECCCHHHHHH
Q ss_conf --------------68699873-55307888976888888889980765899999
Q gi|254780690|r 264 --------------RATIIITN-PTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 (354)
Q Consensus 264 --------------~A~vvitN-PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~I 303 (354)
T Consensus 271 TH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPive~~---pLARaL 322 (352)
T PRK05702 271 THYAVALKYDRGKMAAPVVVAKGVDEVALRIREIAREHNVPIVENP---PLARAL 322 (352)
T ss_pred CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECH---HHHHHH
T ss_conf 8628998878899999988774586999999999998699887478---999999