HHsearch alignment for GI: 254780690 and conserved domain: PRK06298

>PRK06298 type III secretion system protein; Validated.
Probab=100.00  E-value=0  Score=862.53  Aligned_cols=344  Identities=23%  Similarity=0.316  Sum_probs=325.2

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             77686658787999998578751335999999999999999999999999999999997200012104979899999999
Q gi|254780690|r    8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL   87 (354)
Q Consensus         8 ~eKTE~PT~kRL~dARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T Consensus         2 gEKTE~PT~kKL~dARekGqV~kS~El~~a~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~   79 (360)
T PRK06298          2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFKQAPTN--HDPGVTLYYLKNC   79 (360)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
T ss_conf             98899998578999996699985675999999999999999999999999999999999735554--5547899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999998877687853210137121377910169343033201266799999999999999999999998
Q gi|254780690|r   88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT  167 (354)
Q Consensus        88 ~~~~~~~~~p~~~~~~l~~i~~~l~q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~  167 (354)
T Consensus        80 ~~~~~~~~lP~~~~~~~~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~GlKriFS~k~LvEl~KsllKv~~~~~v~~~~l~  159 (360)
T PRK06298         80 LMLILTASLPLLGAVAFVGVIIGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVLK  159 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999986455336101578742136878788860487899999999999999999999999


Q ss_pred             HCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             32156897840897999999999999999999999999999766799999998406998999999754489989999999
Q gi|254780690|r  168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK  247 (354)
Q Consensus       168 ~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r  247 (354)
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~via~~D~~~qr~~~~k~LkMSkqEvKdE~Ke~EGdP~vK~r~R  239 (360)
T PRK06298        160 NRVPLIIETAGVPPIVTAQIFKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR  239 (360)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999998825899999999999999999999999999999999999999998707999999989886639999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHH
Q ss_conf             99999999889860776869987355307888976888888889980765899999999997399788688999999972
Q gi|254780690|r  248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ  327 (354)
Q Consensus       248 ~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~  327 (354)
T Consensus       240 ~~~re~a~~~m~~~V~~A~vVitNPTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~VPiven~pLARaLy~~  319 (360)
T PRK06298        240 QIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGIPIMRNVPLAHQLLDE  319 (360)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf             99999997178726999988998886178886666899999988885485999999999998799887176999999982


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             88989489899999999999997302
Q gi|254780690|r  328 VPINSAIPPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       328 ~~ig~~Ip~~~y~aVA~il~~v~~lk  353 (354)
T Consensus       320 ~~vg~~IP~~ly~aVA~iL~~v~~l~  345 (360)
T PRK06298        320 GKELKFIPESTYEAIGEILLYITSLN  345 (360)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             67888489999999999999999974