HHsearch alignment for GI: 254780690 and conserved domain: PRK08156
>PRK08156 surface presentation of antigens protein SpaS; Validated.
Probab=95.13 E-value=0.39 Score=29.49 Aligned_cols=225 Identities=13% Similarity=0.138 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999887768---7853210137121377--91016934303320126679999999999999999999999
Q gi|254780690|r 92 SRLVIPGLLLFMMFGIGS---YLIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 (354)
Q Consensus 92 ~~~~~p~~~~~~l~~i~~---~l~q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i 166 (354)
T Consensus 82 ~P~~~~~~l~~i~a~l~Q~G~~fs~k~l~Pk~~kLNPi~GlKRiFS~k~LvEl-----~KsllK~~~l~~-~~~~~~~~~ 155 (367)
T PRK08156 82 IPFLLLCLLAGALPSLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEF-----VKALLYLIVFAL-TAYVFWKKY 155 (367)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEECCHHCCCCHHHCCHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHH
T ss_conf 99999999999999997217641602036536437864410011357689999-----999999999999-999999988
Q ss_pred HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 832156897840897999999999999999999999999999766799999998-4069989999997544899899999
Q gi|254780690|r 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPIIKNR 245 (354)
Q Consensus 167 ~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqEvK~E~K~~EGdP~iK~~ 245 (354)
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~iD~~~Qr~~~~k~LrMSkqEVKdE~Ke~EGdP~vK~r~R~~ 235 (367)
T PRK08156 156 KKEIFSQLNGNIVGLIVIWRELLVALVLTFLACALIVLILDAIAEYFLYMKDMKMDKQEVKREYKEQEGNPEIKSKRREA 235 (367)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999985079999999999999999999999999999999999999999974899899999988663999999999999
Q ss_pred HHHHHHHHHHHHHHH-H------------------CCCCCEEEE-CCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 999999999988986-0------------------776869987-35530788897688888888998076589999999
Q gi|254780690|r 246 QKSIARSRIRHKMME-A------------------TSRATIIIT-NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 (354)
Q Consensus 246 ~r~~~re~~~~~~~~-~------------------V~~A~vvit-NPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~ 305 (354)
T Consensus 236 ~re~a~~~m~~~Vp~AdVVItNPTH~AVALkY~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPive~~---pLARaLy~ 312 (367)
T PRK08156 236 HQEILSEQVKSDIENSRLIVANPTHIAIGIYFNPDLAPIPFISVRETNQRALAVRAYAEKVGVPVVRDI---KLARSLYK 312 (367)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCHHHEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCH---HHHHHHHH
T ss_conf 999998679734899998998856220465546888999988874685999999999998699886276---99999997
Q ss_pred HHHHC-CCCEEECHHHHHHHH
Q ss_conf 99973-997886889999999
Q gi|254780690|r 306 IAYEH-NIPIFEEPSLARSLF 325 (354)
Q Consensus 306 ~A~~~-~Vpive~~~LAR~Ly 325 (354)
T Consensus 313 ~~~~~~~Ip~~ly~aVA~vl~ 333 (367)
T PRK08156 313 THRRYSFVSLEDIDEVLRLLI 333 (367)
T ss_pred HCCCCCCCCHHHHHHHHHHHH
T ss_conf 267888689999999999999