HHsearch alignment for GI: 254780690 and conserved domain: PRK09108
>PRK09108 type III secretion system protein HrcU; Validated.
Probab=97.04 E-value=0.049 Score=36.60 Aligned_cols=287 Identities=13% Similarity=0.123 Sum_probs=153.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 998767877686658787999-----998578751335999999999999999999999999999999997200-01210
Q gi|254780690|r 1 MSENDAPDNKTEAPSSKKIED-----ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA-TQRKL 74 (354)
Q Consensus 1 MAe~d~~~eKTE~PT~kRL~d-----ARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 74 (354)
T Consensus 1 MSdE-KTE~PT~kRl~dARekGqV~kS~E---l~~~~--~L~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~ 73 (354)
T PRK09108 1 MSDE-KTEEPTEKKLKDARRDGEVAKSPD---LTAAA--VLLAALLVLTAAGSYLTDHL-RALVRTALDFVSGERSLQAL 73 (354)
T ss_pred CCCC-CCCCCCHHHHHHHHHCCCCCCHHH---HHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCHHHH
T ss_conf 9988-899998578999997699974786---99999--99999999999999999999-99999998622454678999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 497989999999999999999999999998877687---853210137121377--910169343033201266799999
Q gi|254780690|r 75 EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY---LIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFM 149 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~---l~q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~ 149 (354)
T Consensus 74 --~~~~~~~~~~~~~~~lp~~~~~~~~~i~~~~~Q~G~~fs~k~l~pk~~rlNPi~GlKriFS~k~LvEl-----~Ksll 146 (354)
T PRK09108 74 --LAALHHIGAQALLLMLPFVAAALVAGILGQAPQTGLNISLKPVMPKFDSLNPAAGLKKIFSLRSLIEL-----VKMIV 146 (354)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHCCCHHHHHHCCCCHHHHHHH-----HHHHH
T ss_conf --99999999999999999999999999999984036540514136760205865544244468889999-----99999
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHH
Q ss_conf 99999999999999999832156897840897999999999999999999999999999766799999998-40699899
Q gi|254780690|r 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQE 228 (354)
Q Consensus 150 KsllKv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqE 228 (354)
T Consensus 147 Kv~~l~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~via~~D~~~qr~~~~k~LkMSkqEvK~E 225 (354)
T PRK09108 147 KAVVIACVLWKTI-TSLFPLIVGAAYESPPQLAQILWTVLMKLLAVAALVFLVVGAADWKIQRWLFIRDNRMSKDEVKRE 225 (354)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999999999-999999999850699999999999999999999999999999999999999999738998999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHH---C----------------CCCCEEEEC-CCCEEEEEEECCCCCC
Q ss_conf 999975448998999999999999-999889860---7----------------768699873-5530788897688888
Q gi|254780690|r 229 IKDEIKQSYGNPIIKNRQKSIARS-RIRHKMMEA---T----------------SRATIIITN-PTHYALALRYIQTEND 287 (354)
Q Consensus 229 vK~E~K~~EGdP~iK~~~r~~~re-~~~~~~~~~---V----------------~~A~vvitN-PTH~AVAL~Y~~~~~~ 287 (354)
T Consensus 226 ~K~~EGdP~vK~r~R~~~re~a~~~~~~~~V~~A~vVitNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~ 305 (354)
T PRK09108 226 HKESEGDPHLKGERKRLARELATFAPPRQRVAKANVVVVNPTHYAVALRYAPDEHPLPRVVAKGVDDGALALRRHAHALG 305 (354)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEHHHCCCHHHHHHHHHHHHCC
T ss_conf 88664998999999999999997443653578784899876604678675788898898112168399999999999869
Q ss_pred CCEEEEECCCHHHHHHHH
Q ss_conf 888998076589999999
Q gi|254780690|r 288 APVLVAKGQNLIAKKMRK 305 (354)
Q Consensus 288 aP~vvaKG~~~~A~~Ir~ 305 (354)
T Consensus 306 VPiven~---pLAR~Ly~ 320 (354)
T PRK09108 306 IPIVANP---PVARALYR 320 (354)
T ss_pred CCEEECH---HHHHHHHC
T ss_conf 9787188---99999970