HHsearch alignment for GI: 254780690 and conserved domain: PRK12721

>PRK12721 secretion system apparatus protein SsaU; Reviewed.
Probab=97.02  E-value=0.051  Score=36.45  Aligned_cols=185  Identities=12%  Similarity=0.097  Sum_probs=104.3

Q ss_pred             HHHHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHH
Q ss_conf             853210137121377--910169343033201266799999999999999999999998321568978408979999999
Q gi|254780690|r  111 LIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA  188 (354)
Q Consensus       111 l~q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~  188 (354)
T Consensus       109 fs~k~l~pk~~rlNPi~GlKriFS~k~lvEl-----~KsllKv~lv~~i~~~~l~~~~-~~~~~l~~~~~~~~l~~~~~~  182 (349)
T PRK12721        109 LATKAIGFKGEKINPVSNAKQIFSLHSVFEL-----CKSLLKVIVLSLIFAFLLYYYA-PTFRALPYCGSACALPVVSTL  182 (349)
T ss_pred             ECHHHCCCCHHHCCHHHHHHHHCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHH
T ss_conf             0714148766545874535543377679999-----9999999999999999999999-999987547999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-H-----
Q ss_conf             99999999999999999999766799999998-4069989999997544899899999999999999988986-0-----
Q gi|254780690|r  189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME-A-----  261 (354)
Q Consensus       189 ~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~-~-----  261 (354)
T Consensus       183 ~~~l~~~~~~~llviai~D~~~Qr~~~~k~LkMSKqEVKdE~K~~EGdP~iK~r~R~~~re~a~~~m~~~V~~AdvVitN  262 (349)
T PRK12721        183 IKWLWGGVIAFYLVFGILDYAFQRYKIMKQLKMSKDDVKQEHKDSEGDPEIKQKRRELQSEIQSGSLAQNVKKSTAVVRN  262 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             99999999999999999999999999998738999999999886639999999999999999985787268999889988


Q ss_pred             -------------CCCCCEEEEC-CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHH
Q ss_conf             -------------7768699873-553078889768888888899807658999999
Q gi|254780690|r  262 -------------TSRATIIITN-PTHYALALRYIQTENDAPVLVAKGQNLIAKKMR  304 (354)
Q Consensus       262 -------------V~~A~vvitN-PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir  304 (354)
T Consensus       263 PTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~vPiven~---~LAR~Ly  316 (349)
T PRK12721        263 PTHIAVCLGYHPGETPLPRVLEKGSDAQALYIVNLAERNGIPVVENI---PLARALF  316 (349)
T ss_pred             CCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCH---HHHHHHH
T ss_conf             65276400026889999988885385999999999998799786287---9999999