HHsearch alignment for GI: 254780690 and conserved domain: PRK12721
>PRK12721 secretion system apparatus protein SsaU; Reviewed.
Probab=97.02 E-value=0.051 Score=36.45 Aligned_cols=185 Identities=12% Similarity=0.097 Sum_probs=104.3
Q ss_pred HHHHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHH
Q ss_conf 853210137121377--910169343033201266799999999999999999999998321568978408979999999
Q gi|254780690|r 111 LIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 (354)
Q Consensus 111 l~q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~KsllKv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~ 188 (354)
T Consensus 109 fs~k~l~pk~~rlNPi~GlKriFS~k~lvEl-----~KsllKv~lv~~i~~~~l~~~~-~~~~~l~~~~~~~~l~~~~~~ 182 (349)
T PRK12721 109 LATKAIGFKGEKINPVSNAKQIFSLHSVFEL-----CKSLLKVIVLSLIFAFLLYYYA-PTFRALPYCGSACALPVVSTL 182 (349)
T ss_pred ECHHHCCCCHHHCCHHHHHHHHCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHH
T ss_conf 0714148766545874535543377679999-----9999999999999999999999-999987547999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-H-----
Q ss_conf 99999999999999999999766799999998-4069989999997544899899999999999999988986-0-----
Q gi|254780690|r 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME-A----- 261 (354)
Q Consensus 189 ~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~-~----- 261 (354)
T Consensus 183 ~~~l~~~~~~~llviai~D~~~Qr~~~~k~LkMSKqEVKdE~K~~EGdP~iK~r~R~~~re~a~~~m~~~V~~AdvVitN 262 (349)
T PRK12721 183 IKWLWGGVIAFYLVFGILDYAFQRYKIMKQLKMSKDDVKQEHKDSEGDPEIKQKRRELQSEIQSGSLAQNVKKSTAVVRN 262 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 99999999999999999999999999998738999999999886639999999999999999985787268999889988
Q ss_pred -------------CCCCCEEEEC-CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHH
Q ss_conf -------------7768699873-553078889768888888899807658999999
Q gi|254780690|r 262 -------------TSRATIIITN-PTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 (354)
Q Consensus 262 -------------V~~A~vvitN-PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir 304 (354)
T Consensus 263 PTH~AVAL~Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~vPiven~---~LAR~Ly 316 (349)
T PRK12721 263 PTHIAVCLGYHPGETPLPRVLEKGSDAQALYIVNLAERNGIPVVENI---PLARALF 316 (349)
T ss_pred CCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCH---HHHHHHH
T ss_conf 65276400026889999988885385999999999998799786287---9999999