HHsearch alignment for GI: 254780690 and conserved domain: PRK12773
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=96.93 E-value=0.061 Score=35.87 Aligned_cols=285 Identities=14% Similarity=0.165 Sum_probs=148.8
Q ss_pred CCCCC-CCCCCCCCCHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 98767-87768665878799999-85787513359999999999999999999999999999999972000121049798
Q gi|254780690|r 2 SENDA-PDNKTEAPSSKKIEDAL-NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79 (354)
Q Consensus 2 Ae~d~-~~eKTE~PT~kRL~dAR-ekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
T Consensus 298 AEDEGRTEpATpRRrRKAREEGqVpKS~EL~s-AvVLLagvi~L~~mG~~~~~r~~~ll~~yl~~~~~~~~-~~~~~~~~ 375 (649)
T PRK12773 298 AEDEGRTEPGSERRRREEREKGNVPKSPELPA-AVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTD-MSSESVTE 375 (649)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHH
T ss_conf 45678889998256898885579887610468-99999999999999999999999999999874366632-22678999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHCCCHHHCCCCCCCCCHHH-HHHHCCCHHHHHHHHHHHHH
Q ss_conf 99-99999999999999999999998877687--8532-10137121377910169343-03320126679999999999
Q gi|254780690|r 80 IV-FLLTHLSLSASRLVIPGLLLFMMFGIGSY--LIQR-IPVLNLNHVKPSFKRVSLRE-GIKRIYSINNLVNFMKSFVK 154 (354)
Q Consensus 80 ~~-~~~~~~~~~~~~~~~p~~~~~~l~~i~~~--l~q~-G~~fs~k~l~pk~~rlNPi~-GlKriFS~k~lvel~KsllK 154 (354)
T Consensus 376 ll~~~~~~~l~ll~PL~lv~~VaAllaNi~QVGFLFT~KpL~PKf~RINPGFKriFsSr~sLfeL~-----KSL~KvvII 450 (649)
T PRK12773 376 LLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRPNFKKVLPTRQTLFNLG-----KSLAKVGLI 450 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHCCCCHHHCCCCHHHHHHHH-----HHHHHHHHH
T ss_conf 999999999999999999999999998888413463367778744423975222045478999999-----999999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHH
Q ss_conf 999999999999832156897840897999999999999999999999999999766799999998406-9989999997
Q gi|254780690|r 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK-MSKQEIKDEI 233 (354)
Q Consensus 155 v~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k~lk-MskqEvK~E~ 233 (354)
T Consensus 451 g~V~Ys~Ir~~l~~-il~l~dm~l~~~i~lv~~la~ki~l~~givLl~IAIiDy~yQR~e~~k~LKMSKQEVKdE~Ke~E 529 (649)
T PRK12773 451 AWVSYIIISKDFFP-ILLSGEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESD 529 (649)
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 99999999988887-76431588678999999999999999999999999999999999999966898899998864267
Q ss_pred HHCCCCHHHHHHHHHHHHH--HHHHHHHHHC------------------CCCCEEEECC-CCEEEEEEECCCCCCCCEEE
Q ss_conf 5448998999999999999--9998898607------------------7686998735-53078889768888888899
Q gi|254780690|r 234 KQSYGNPIIKNRQKSIARS--RIRHKMMEAT------------------SRATIIITNP-THYALALRYIQTENDAPVLV 292 (354)
Q Consensus 234 K~~EGdP~iK~~~r~~~re--~~~~~~~~~V------------------~~A~vvitNP-TH~AVAL~Y~~~~~~aP~vv 292 (354)
T Consensus 530 GDP~IKariRq~qREma~~RrMm~~VPkADVVITNPTH~AVALkYd~~~m~AP~VVAKG~d~~A~rIreiArE~~VPIvE 609 (649)
T PRK12773 530 GDRSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVE 609 (649)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEC
T ss_conf 99789999999999999988899619999989828771568988558888899898638847999999999985997761
Q ss_pred EE
Q ss_conf 80
Q gi|254780690|r 293 AK 294 (354)
Q Consensus 293 aK 294 (354)
T Consensus 610 N~ 611 (649)
T PRK12773 610 DR 611 (649)
T ss_pred CH
T ss_conf 87