HHsearch alignment for GI: 254780690 and conserved domain: PRK13109
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=97.26 E-value=0.031 Score=38.13 Aligned_cols=294 Identities=12% Similarity=0.102 Sum_probs=145.4
Q ss_pred CCCCCCCCCCCHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 67877686658787999-----9985787513359999999999999999999999999999999972000121049798
Q gi|254780690|r 5 DAPDNKTEAPSSKKIED-----ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79 (354)
Q Consensus 5 d~~~eKTE~PT~kRL~d-----ARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (354)
T Consensus 9 eKTE~PT~kRL~~ARekGqVakS~E---l--~~~~~ll~~l~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~ 82 (358)
T PRK13109 9 SKTEEPTERKVRDAIEKGDIPVSRE---A--SIFASMLGLLIILAFFARGQVAQLTRDLAPLLDDPRGFTLET-GADAIL 82 (358)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHH
T ss_conf 9899998578999996799965786---9--999999999999999999999999999999982740024221-565999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf -9999999999999999999999998877687---853210137121377--9101693430332012667999999999
Q gi|254780690|r 80 -IVFLLTHLSLSASRLVIPGLLLFMMFGIGSY---LIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFMKSFV 153 (354)
Q Consensus 80 -~~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~---l~q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~Ksll 153 (354)
T Consensus 83 ~~~~~~~~~~~~l~P~~~~~~v~~i~~~~~Q~G~~fs~k~l~Pk~~kLNPi~GlKriF---S~~~Lvel--~KsllK~~~ 157 (358)
T PRK13109 83 LLSRVGLAAGRFLLPILLVLAVAGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIF---GTQGQVEF--AKSLFKFLS 157 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHCCHHHHHHHHC---CHHHHHHH--HHHHHHHHH
T ss_conf 9999999999999999999999999999860140305412688767659735056542---58789999--999999999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHH
Q ss_conf 9999999999999832156897840897999999999999999999999999999766799999998-406998999999
Q gi|254780690|r 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDE 232 (354)
Q Consensus 154 Kv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqEvK~E 232 (354)
T Consensus 158 l~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~Qr~~~~k~lkMskqEvK~E~K~~ 236 (358)
T PRK13109 158 VSVVVLLLLRSERAK-AVNAMFVDPSALPELILTVAMRLVSAVSIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQA 236 (358)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 999999999988999-9998744899999999999999999999999999999999999999986489999999998866
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHH-------------------CCCCCEEEE-CCCCEEEEEEECCCCCCCCEEE
Q ss_conf 75448998999999999999999889860-------------------776869987-3553078889768888888899
Q gi|254780690|r 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEA-------------------TSRATIIIT-NPTHYALALRYIQTENDAPVLV 292 (354)
Q Consensus 233 ~K~~EGdP~iK~~~r~~~re~~~~~~~~~-------------------V~~A~vvit-NPTH~AVAL~Y~~~~~~aP~vv 292 (354)
T Consensus 237 EGdP~iK~r~R~~~re~a~~~m~~~V~~AdvVitNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPive 316 (358)
T PRK13109 237 EGDPSVKARLRSLAQDRARNRMLAAVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAERNGIPVIE 316 (358)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEC
T ss_conf 39999999999999999987787258988389988871567766668999999888845869999999999987997870
Q ss_pred EECCCHHHHHHHHHHH-HCCCC
Q ss_conf 8076589999999999-73997
Q gi|254780690|r 293 AKGQNLIAKKMRKIAY-EHNIP 313 (354)
Q Consensus 293 aKG~~~~A~~Ir~~A~-~~~Vp 313 (354)
T Consensus 317 ~~---pLARaLy~~~~vg~~IP 335 (358)
T PRK13109 317 DK---PLARSLYDAVQVDQVIP 335 (358)
T ss_pred CH---HHHHHHHHCCCCCCCCC
T ss_conf 78---99999997077899689