HHsearch alignment for GI: 254780690 and conserved domain: PRK13109

>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed.
Probab=97.26  E-value=0.031  Score=38.13  Aligned_cols=294  Identities=12%  Similarity=0.102  Sum_probs=145.4

Q ss_pred             CCCCCCCCCCCHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             67877686658787999-----9985787513359999999999999999999999999999999972000121049798
Q gi|254780690|r    5 DAPDNKTEAPSSKKIED-----ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH   79 (354)
Q Consensus         5 d~~~eKTE~PT~kRL~d-----ARekGqV~kS~el~~~~~ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   79 (354)
T Consensus         9 eKTE~PT~kRL~~ARekGqVakS~E---l--~~~~~ll~~l~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~   82 (358)
T PRK13109          9 SKTEEPTERKVRDAIEKGDIPVSRE---A--SIFASMLGLLIILAFFARGQVAQLTRDLAPLLDDPRGFTLET-GADAIL   82 (358)
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHH
T ss_conf             9899998578999996799965786---9--999999999999999999999999999999982740024221-565999


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             -9999999999999999999999998877687---853210137121377--9101693430332012667999999999
Q gi|254780690|r   80 -IVFLLTHLSLSASRLVIPGLLLFMMFGIGSY---LIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSINNLVNFMKSFV  153 (354)
Q Consensus        80 -~~~~~~~~~~~~~~~~~p~~~~~~l~~i~~~---l~q~G~~fs~k~l~p--k~~rlNPi~GlKriFS~k~lvel~Ksll  153 (354)
T Consensus        83 ~~~~~~~~~~~~l~P~~~~~~v~~i~~~~~Q~G~~fs~k~l~Pk~~kLNPi~GlKriF---S~~~Lvel--~KsllK~~~  157 (358)
T PRK13109         83 LLSRVGLAAGRFLLPILLVLAVAGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIF---GTQGQVEF--AKSLFKFLS  157 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHCCHHHHHHHHC---CHHHHHHH--HHHHHHHHH
T ss_conf             9999999999999999999999999999860140305412688767659735056542---58789999--999999999


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHH
Q ss_conf             9999999999999832156897840897999999999999999999999999999766799999998-406998999999
Q gi|254780690|r  154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS-KLKMSKQEIKDE  232 (354)
Q Consensus       154 Kv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~~~qr~~~~k-~lkMskqEvK~E  232 (354)
T Consensus       158 l~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~Qr~~~~k~lkMskqEvK~E~K~~  236 (358)
T PRK13109        158 VSVVVLLLLRSERAK-AVNAMFVDPSALPELILTVAMRLVSAVSIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQA  236 (358)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             999999999988999-9998744899999999999999999999999999999999999999986489999999998866


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHH-------------------CCCCCEEEE-CCCCEEEEEEECCCCCCCCEEE
Q ss_conf             75448998999999999999999889860-------------------776869987-3553078889768888888899
Q gi|254780690|r  233 IKQSYGNPIIKNRQKSIARSRIRHKMMEA-------------------TSRATIIIT-NPTHYALALRYIQTENDAPVLV  292 (354)
Q Consensus       233 ~K~~EGdP~iK~~~r~~~re~~~~~~~~~-------------------V~~A~vvit-NPTH~AVAL~Y~~~~~~aP~vv  292 (354)
T Consensus       237 EGdP~iK~r~R~~~re~a~~~m~~~V~~AdvVitNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~~~~VPive  316 (358)
T PRK13109        237 EGDPSVKARLRSLAQDRARNRMLAAVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAERNGIPVIE  316 (358)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEC
T ss_conf             39999999999999999987787258988389988871567766668999999888845869999999999987997870


Q ss_pred             EECCCHHHHHHHHHHH-HCCCC
Q ss_conf             8076589999999999-73997
Q gi|254780690|r  293 AKGQNLIAKKMRKIAY-EHNIP  313 (354)
Q Consensus       293 aKG~~~~A~~Ir~~A~-~~~Vp  313 (354)
T Consensus       317 ~~---pLARaLy~~~~vg~~IP  335 (358)
T PRK13109        317 DK---PLARSLYDAVQVDQVIP  335 (358)
T ss_pred             CH---HHHHHHHHCCCCCCCCC
T ss_conf             78---99999997077899689