HHsearch alignment for GI: 254780690 and conserved domain: TIGR00789
>TIGR00789 flhB_rel FlhB domain protein; InterPro: IPR004683 This group describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set..
Probab=99.75 E-value=3.8e-18 Score=164.15 Aligned_cols=80 Identities=33% Similarity=0.550 Sum_probs=76.6
Q ss_pred CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 55307888976888888889980765899999999997399788688999999972889894898999999999999973
Q gi|254780690|r 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 (354)
Q Consensus 272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~ 351 (354)
T Consensus 1 ~~~KAVAL~Y~~~~d~AP~V~AsG~GevA~~II~~AK~~gipi~ed~~L~~~L~~-l~l~~~IPee~Y~~Va~iFaFly~ 79 (84)
T TIGR00789 1 KIKKAVALKYDKGKDKAPKVVASGVGEVAEKIIELAKKHGIPIKEDEDLVDVLLK-LDLDDEIPEELYEVVAEIFAFLYK 79 (84)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9742001365567886885774167657889999997638997658289998744-054576885788999999999998
Q ss_pred H
Q ss_conf 0
Q gi|254780690|r 352 K 352 (354)
Q Consensus 352 l 352 (354)
T Consensus 80 ~ 80 (84)
T TIGR00789 80 L 80 (84)
T ss_pred H
T ss_conf 6