HHsearch alignment of GI: 254780690 and MMDB domain: 2jli_A_
>2jli_A (A:) YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=100.00 E-value=3.4e-41 Score=346.17 Aligned_cols=123 Identities=29% Similarity=0.472 Sum_probs=121.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 99999754489989999999999999998898607768699873553078889768888888899807658999999999
Q gi|254780690|r 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 (354)
Q Consensus 228 EvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A 307 (354)
||||||||+||||+||++|||+|||+++++++.+|++||+||+||||+||||+||++.++||+|+|||.|++|++|+++|
T Consensus 1 EvK~E~Ke~EGdP~iK~~rr~~~~e~~~~~~~~~v~~a~~vi~npth~AVaL~Y~~~~~~aP~VvakG~g~~A~~I~~~A 80 (123)
T 2jli_A 1 EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA 80 (123)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTCSEEEECCCSEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHH
T ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCHHEEEEEECCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 90256553659989999999999999864123057745189848723058878578999999997636819999999999
Q ss_pred HHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9739978868899999997288989489899999999999997
Q gi|254780690|r 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 (354)
Q Consensus 308 ~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~ 350 (354)
+++||||++|++|||+||+++++|++||+++|++||+||+||-
T Consensus 81 ~~~gIPiv~d~~LAr~L~~~~~~g~~IP~ely~aVA~il~~v~ 123 (123)
T 2jli_A 81 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 123 (123)
T ss_dssp HHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHHHHC---
T ss_pred HHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9859988978999999997488989069999999999998419