HHsearch alignment of GI: 254780690 and MMDB domain: 2vt1_B_1-68

>2vt1_B (B:1-68) Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.0A {Shigella flexneri}

Probab=99.82  E-value=3.1e-20  Score=180.23  Aligned_cols=67  Identities=30%  Similarity=0.340  Sum_probs=65.9

Q ss_pred             CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             5530788897688888888998076589999999999739978868899999997288989489899
Q gi|254780690|r  272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF  338 (354)
Q Consensus       272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~  338 (354)
                      ||||||||+||+++++||+|+|||.|.+|++||++|+++||||++|++|||+||+++++|++||+|.
T Consensus         1 Pth~AVaL~Yd~~~~~aP~V~AkG~g~~A~~I~~~A~~~gVPi~~~~~LAr~L~~~~~~g~~IP~e~   67 (68)
T 2vt1_B            1 PTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEH   67 (68)
T ss_dssp             CCSEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCSSEECCTTT
T ss_pred             CCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHH
T ss_conf             9679999886789998999999748788999999999869909989999999998055899589999