HHsearch results for GI: 254780690 and protein with PDBid: 2vt1_B
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=99.93 E-value=4.3e-26 Score=225.33 Aligned_cols=82 Identities=28% Similarity=0.312 Sum_probs=81.1
Q ss_pred CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 55307888976888888889980765899999999997399788688999999972889894898999999999999973
Q gi|254780690|r 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 (354)
Q Consensus 272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~ 351 (354)
||||||||+||+++++||+|+|||+|.+|++||++|+++||||++|++|||+||.++++|++||+++|++||+||+|||+
T Consensus 1 PTH~AVAL~Y~~~~~~aP~VvAkG~g~~A~~I~~~A~~~gIPiv~~~~LAr~L~~~~~~g~~IP~ely~aVA~IL~~v~~ 80 (93)
T 2vt1_B 1 PTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 80 (93)
T ss_dssp CCSEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCSSEECCTTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 96699999857899989999985185999999999998599888499999999974889881789999999999999999
Q ss_pred HC
Q ss_conf 02
Q gi|254780690|r 352 KK 353 (354)
Q Consensus 352 lk 353 (354)
++
T Consensus 81 l~ 82 (93)
T 2vt1_B 81 VE 82 (93)
T ss_dssp C-
T ss_pred HH
T ss_conf 87