Query gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] Match_columns 354 No_of_seqs 156 out of 1618 Neff 7.0 Searched_HMMs 23785 Date Tue May 31 17:24:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780690.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2jlj_A YSCU, YOP proteins tran 100.0 0 0 410.5 12.1 135 219-353 1-135 (144) 2 3bzs_A ESCU; auto cleavage pro 100.0 0 0 403.7 10.2 134 220-353 3-136 (137) 3 2jli_A YSCU, YOP proteins tran 100.0 5.4E-43 0 359.2 11.1 122 228-349 1-122 (123) 4 3c01_E Surface presentation of 99.9 4.1E-26 1.7E-30 225.5 11.0 82 272-353 1-82 (98) 5 3bzy_B ESCU; auto cleavage pro 99.9 5.5E-26 2.3E-30 224.5 10.1 82 272-353 1-82 (83) 6 2vt1_B Surface presentation of 99.9 4.3E-26 1.8E-30 225.3 9.3 82 272-353 1-82 (93) 7 3bzy_A ESCU; auto cleavage pro 99.7 9.5E-17 4E-21 151.4 6.6 52 220-271 3-54 (54) 8 3c01_A Surface presentation of 99.6 7.6E-16 3.2E-20 144.2 6.6 48 224-271 1-48 (48) 9 2vt1_A Surface presentation of 99.6 6E-17 2.5E-21 153.0 -1.5 51 221-271 2-52 (52) 10 1wo8_A Methylglyoxal synthase; 77.1 1.8 7.6E-05 22.5 3.4 68 233-332 54-124 (126) 11 2yvq_A Carbamoyl-phosphate syn 76.4 3.1 0.00013 20.6 4.4 48 263-328 95-142 (143) 12 1b93_A Protein (methylglyoxal 74.9 2.8 0.00012 21.0 3.8 35 295-329 97-131 (152) 13 2oar_A Large-conductance mecha 72.2 2.8 0.00012 20.9 3.4 22 147-168 94-115 (174) 14 1m62_A BAG-family molecular ch 66.1 4 0.00017 19.7 3.1 33 224-256 46-78 (87) 15 1uk5_A BAG-family molecular ch 65.9 4.1 0.00017 19.7 3.1 33 224-256 65-97 (111) 16 1ugo_A BCL2-associated athanog 64.9 4.4 0.00018 19.4 3.1 31 226-256 55-85 (99) 17 1m7k_A Silencer of death domai 61.9 5.3 0.00022 18.7 3.1 33 224-256 59-91 (99) 18 1vmd_A MGS, methylglyoxal synt 61.0 7 0.0003 17.8 3.6 66 234-329 82-147 (178) 19 3a8y_C BAG family molecular ch 58.6 8.4 0.00035 17.2 3.8 33 224-256 69-101 (142) 20 3g0t_A Putative aminotransfera 51.4 11 0.00045 16.4 4.1 24 131-154 190-213 (437) 21 3dci_A Arylesterase; SGNH_hydr 46.9 12 0.00052 15.9 3.5 98 246-351 129-227 (232) 22 3frk_A QDTB; aminotransferase, 46.7 7.8 0.00033 17.5 1.9 45 302-346 294-361 (373) 23 2c81_A Glutamine-2-deoxy-scyll 45.8 8.4 0.00035 17.2 1.9 84 221-311 247-335 (418) 24 2gv9_A DNA polymerase; polymer 45.7 13 0.00054 15.7 3.7 30 271-300 1006-1042(1193) 25 3dr4_A Putative perosamine syn 42.1 11 0.00047 16.2 2.1 59 289-347 309-387 (391) 26 3bb8_A CDP-4-keto-6-deoxy-D-gl 41.5 9.7 0.00041 16.7 1.7 35 318-352 398-435 (437) 27 1ydw_A AX110P-like protein; st 40.2 9.5 0.0004 16.8 1.5 18 13-30 38-55 (362) 28 3nyt_A Aminotransferase WBPE; 37.6 14 0.0006 15.4 2.0 47 302-348 293-359 (367) 29 2po3_A 4-dehydrase; external a 36.5 14 0.0006 15.4 1.9 48 302-349 314-382 (424) 30 2oga_A Transaminase; PLP-depen 36.4 12 0.00049 16.1 1.4 52 301-352 321-395 (399) 31 1f6g_A Voltage-gated potassium 36.3 17 0.00073 14.7 11.2 58 196-253 97-155 (160) 32 2dpl_A GMP synthetase, GMP syn 36.2 18 0.00074 14.7 5.9 106 238-346 95-213 (308) 33 1mdo_A ARNB aminotransferase; 34.7 12 0.00049 16.1 1.2 123 221-352 241-385 (393) 34 3b8x_A WBDK, pyridoxamine 5-ph 34.2 13 0.00054 15.7 1.4 48 299-346 317-389 (390) 35 1r9d_A Glycerol dehydratase; r 33.4 16 0.00069 14.9 1.8 22 209-231 288-309 (787) 36 1ko7_A HPR kinase/phosphatase; 33.3 17 0.00072 14.8 1.9 34 289-323 83-116 (314) 37 2f3o_A PFLD, PFL2, pyruvate fo 32.5 14 0.00057 15.6 1.3 44 295-347 347-390 (776) 38 1wkc_A HB8 TT1367 protein; str 31.9 20 0.00085 14.2 2.3 12 224-235 1-12 (184) 39 1h05_A 3-dehydroquinate dehydr 31.7 2.3 9.9E-05 21.6 -2.7 19 263-281 67-88 (146) 40 3if2_A Aminotransferase; YP_26 31.4 21 0.00086 14.1 4.8 25 131-155 214-238 (444) 41 3lyu_A Putative hydrogenase; t 31.3 21 0.00087 14.1 3.0 28 291-318 111-138 (142) 42 2x3l_A ORN/Lys/Arg decarboxyla 30.8 21 0.00089 14.0 4.0 22 291-312 296-317 (446) 43 1xfi_A Unknown protein; struct 30.6 19 0.00079 14.4 1.7 62 264-334 282-359 (367) 44 1o69_A Aminotransferase; struc 30.4 17 0.00071 14.8 1.5 54 297-350 311-384 (394) 45 3bgw_A DNAB-like replicative h 29.7 22 0.00092 13.9 2.2 30 296-325 335-364 (444) 46 3n8k_A 3-dehydroquinate dehydr 28.8 3.7 0.00015 20.0 -2.2 29 263-291 93-124 (172) 47 1yj7_A ESCJ; mixed alpha/beta, 28.3 23 0.00097 13.7 2.3 44 246-289 88-138 (171) 48 2o6l_A UDP-glucuronosyltransfe 27.5 24 0.001 13.6 1.9 31 221-251 136-166 (170) 49 3k8x_A Acetyl-COA carboxylase; 27.5 24 0.001 13.6 4.9 21 295-315 453-473 (758) 50 3lwz_A 3-dehydroquinate dehydr 27.4 7.2 0.0003 17.7 -0.9 46 261-330 70-121 (153) 51 2fnu_A Aminotransferase; prote 27.0 23 0.00098 13.7 1.7 116 221-351 228-370 (375) 52 2q6t_A DNAB replication FORK h 26.7 24 0.001 13.5 2.4 53 264-326 310-368 (444) 53 2gd7_A Hexim1 protein, HMBA-in 26.6 18 0.00077 14.5 1.1 19 219-237 25-43 (107) 54 2o14_A Hypothetical protein YX 26.1 25 0.0011 13.4 9.5 80 264-350 269-359 (375) 55 2r6a_A DNAB helicase, replicat 25.0 26 0.0011 13.3 2.5 162 123-323 186-366 (454) 56 1gqo_A Dehydroquinase, dhqase; 24.7 6.7 0.00028 18.0 -1.4 45 261-329 63-113 (143) 57 1d2t_A Acid phosphatase; all a 24.6 27 0.0011 13.2 3.9 33 203-235 199-231 (231) 58 2uyg_A 3-dehydroquinate dehydr 24.6 6.1 0.00025 18.3 -1.7 47 263-333 65-117 (149) 59 1gtz_A 3-dehydroquinate dehydr 24.5 4.7 0.0002 19.2 -2.2 18 263-280 71-91 (156) 60 1knx_A Probable HPR(Ser) kinas 24.4 24 0.001 13.6 1.4 29 290-319 87-115 (312) 61 1j32_A Aspartate aminotransfer 24.1 27 0.0011 13.2 4.2 25 131-155 171-195 (388) 62 3bh0_A DNAB-like replicative h 23.8 27 0.0011 13.1 2.2 156 134-325 63-235 (315) 63 2c4w_A 3-dehydroquinate dehydr 23.8 6.2 0.00026 18.2 -1.7 18 263-280 77-97 (176) 64 2ksn_A Ubiquitin domain-contai 23.0 20 0.00084 14.2 0.7 64 218-284 27-100 (137) 65 2r18_A Capsid assembly protein 22.7 29 0.0012 13.0 3.3 29 319-348 87-115 (139) 66 2ioj_A Hypothetical protein AF 22.4 29 0.0012 12.9 2.0 39 288-326 75-117 (139) 67 3f4l_A Putative oxidoreductase 22.4 21 0.0009 14.0 0.8 13 115-127 90-102 (345) 68 1d8j_A General transcription f 21.8 30 0.0012 12.8 4.6 51 206-259 14-64 (81) 69 3glc_A Aldolase LSRF; TIM barr 21.7 30 0.0013 12.8 3.6 93 234-346 182-277 (295) 70 1b9h_A AHBA synthase, protein 21.6 23 0.00095 13.8 0.8 82 221-315 234-320 (388) 71 3dm5_A SRP54, signal recogniti 21.5 30 0.0013 12.8 2.3 32 121-153 276-310 (443) 72 3kip_A 3-dehydroquinase, type 21.4 30 0.0013 12.8 3.2 43 264-330 83-131 (167) 73 2csu_A 457AA long hypothetical 20.9 31 0.0013 12.7 3.2 39 286-324 402-441 (457) 74 2ez2_A Beta-tyrosinase, tyrosi 20.7 31 0.0013 12.7 2.4 48 304-353 368-431 (456) 75 1cr0_A DNA primase/helicase; R 20.6 31 0.0013 12.7 2.2 53 263-322 146-198 (296) 76 2l16_A SEC-independent protein 20.6 31 0.0013 12.7 2.3 35 216-250 34-68 (78) 77 2knc_A Integrin alpha-IIB; tra 20.4 20 0.00084 14.2 0.3 27 197-223 17-43 (54) 78 1j5p_A Aspartate dehydrogenase 20.3 16 0.00068 14.9 -0.2 15 301-315 102-116 (253) 79 1uqr_A 3-dehydroquinate dehydr 20.3 4 0.00017 19.7 -3.3 69 261-353 64-147 (154) 80 3m2t_A Probable dehydrogenase; 20.2 22 0.00092 13.9 0.5 22 13-34 38-60 (359) No 1 >2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein transport, type III secretion system, plasmid; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A Probab=100.00 E-value=0 Score=410.50 Aligned_cols=135 Identities=29% Similarity=0.455 Sum_probs=133.3 Q ss_pred HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCH Q ss_conf 98406998999999754489989999999999999998898607768699873553078889768888888899807658 Q gi|254780690|r 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 (354) Q Consensus 219 ~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~ 298 (354) +|+||||||||||||||+||||+||++||++|||+++++++.+|++|||||||||||||||+||+++++||+|||||.|. T Consensus 1 ik~lkMsk~EvK~E~K~~EGdP~iK~~rr~~~~e~~~~~~~~~v~~a~vvi~NPth~AVAL~Yd~~~~~aP~VvAkG~g~ 80 (144) T 2jlj_A 1 IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIGILYKRGETPLPLVTFKYTDA 80 (144) T ss_dssp -------------------CCHHHHHHHHHHHHHHCCCCHHHHHHTCSEEEEETTTEEEEEECCTTTCSSCEEEEEEETH T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCEEECCCCCH T ss_conf 94144888999999884539989999999999999985777405741389957871678988788999878820416829 Q ss_pred HHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999739978868899999997288989489899999999999997302 Q gi|254780690|r 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354) Q Consensus 299 ~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354) +|.+|+++|++|||||+|||+|||+||.++++|++||+++|++||+||+|||+++ T Consensus 81 ~A~~I~~~A~e~gIPi~e~~~LAr~Ly~~~~vg~~IP~ely~aVA~ILa~v~~l~ 135 (144) T 2jlj_A 81 QVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 135 (144) T ss_dssp HHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999859978848999999997488999369999999999999999987 No 2 >3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cyclization, membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A Probab=100.00 E-value=0 Score=403.71 Aligned_cols=134 Identities=31% Similarity=0.476 Sum_probs=131.2 Q ss_pred HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHH Q ss_conf 84069989999997544899899999999999999988986077686998735530788897688888888998076589 Q gi|254780690|r 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 (354) Q Consensus 220 k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~ 299 (354) +.+|||||||||||||+||||+||++||++|||+++++++++|++|||||||||||||||+||+++++||+|||||.|.+ T Consensus 3 h~~~Msk~EvK~E~K~~EGdP~iK~~rr~~~~e~~~~~~~~~v~~A~vvi~NPth~AVAL~Yd~~~~~aP~VvAKG~g~~ 82 (137) T 3bzs_A 3 HMASMSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKLGETPLPLVIETGKDAK 82 (137) T ss_dssp -------------------------------------CHHHHHHHCSEEEEETTTEEEEEECCTTTCSSCEEEEEEETHH T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHH T ss_conf 55657989999998835399899999999999999846762235241787388616899898889999999999508499 Q ss_pred HHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 999999999739978868899999997288989489899999999999997302 Q gi|254780690|r 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 (354) Q Consensus 300 A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk 353 (354) |++|+++|++|||||+||++|||+||+++++|++||+++|++||+||+|||+|. T Consensus 83 A~~I~~~A~e~gVPi~e~~~LAr~Ly~~~~~g~~IP~ely~aVAeILa~v~~Ld 136 (137) T 3bzs_A 83 ALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLD 136 (137) T ss_dssp HHHHHHHHHHHTCCEEECHHHHHHHHHHSCTTCBCCGGGHHHHHHHHHHHC--- T ss_pred HHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 999999999849958878999999997588989379999999999999998425 No 3 >2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis} Probab=100.00 E-value=5.4e-43 Score=359.22 Aligned_cols=122 Identities=30% Similarity=0.483 Sum_probs=121.2 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHH Q ss_conf 99999754489989999999999999998898607768699873553078889768888888899807658999999999 Q gi|254780690|r 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 (354) Q Consensus 228 EvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A 307 (354) ||||||||+||||+||++||++|||+++++|+.+|++|||||||||||||||+||+++++||+|+|||.|.+|++|+++| T Consensus 1 EvK~E~Ke~EGdP~iK~~rr~~~~e~~~~~~~~~v~~A~vvi~NPth~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A 80 (123) T 2jli_A 1 EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA 80 (123) T ss_dssp --------------------CHHHHHHHHHHHHHHHTCSEEEECCCSEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHH T ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCHHEEEEEECCCCCCCCEEEEECCCHHHHHHHHHH T ss_conf 90256553659989999999999999864123057745189848723058878578999999997636819999999999 Q ss_pred HHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 973997886889999999728898948989999999999999 Q gi|254780690|r 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 (354) Q Consensus 308 ~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v 349 (354) ++|||||++||+|||+||.++++|++||+++|++||+||+|| T Consensus 81 ~~~gIPi~~d~~LAr~Ly~~~~~g~~IP~ely~aVA~IL~~v 122 (123) T 2jli_A 81 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWL 122 (123) T ss_dssp HHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHHHHC-- T ss_pred HHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 985998897899999999748898906999999999999841 No 4 >3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1 Probab=99.93 E-value=4.1e-26 Score=225.55 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=80.9 Q ss_pred CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 55307888976888888889980765899999999997399788688999999972889894898999999999999973 Q gi|254780690|r 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 (354) Q Consensus 272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~ 351 (354) ||||||||+||+++++||+|+|||.|.+|++||++|+++||||++|++|||+||+++++|++||+++|++||+||+|+|+ T Consensus 1 PTH~AVAL~Y~~~~~~aP~VvAkG~g~~A~~I~~~A~~~gIPi~~~~~LAr~L~~~~~ig~~IP~ely~aVA~IL~~v~~ 80 (98) T 3c01_E 1 PTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWLEE 80 (98) T ss_dssp CCCEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTCBCCHHHHHHHHHHHHHHHH T ss_pred CCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 96699998846899989998775172999999999999599887099999999973889994899999999999999999 Q ss_pred HC Q ss_conf 02 Q gi|254780690|r 352 KK 353 (354) Q Consensus 352 lk 353 (354) ++ T Consensus 81 l~ 82 (98) T 3c01_E 81 VE 82 (98) T ss_dssp HH T ss_pred HH T ss_conf 87 No 5 >3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B Probab=99.93 E-value=5.5e-26 Score=224.52 Aligned_cols=82 Identities=34% Similarity=0.463 Sum_probs=80.8 Q ss_pred CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 55307888976888888889980765899999999997399788688999999972889894898999999999999973 Q gi|254780690|r 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 (354) Q Consensus 272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~ 351 (354) ||||||||+||+++++||+|+|||.|++|++||++|+++||||+||++|||+||+++++|++||+++|++||+||+|+|+ T Consensus 1 PTH~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A~~~gVPi~~d~~LAr~L~~~~~~g~~IP~ely~aVA~il~~v~~ 80 (83) T 3bzy_B 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKGQYITEDFFEPVAQLIRIAID 80 (83) T ss_dssp CCCEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCTTCBCCGGGHHHHHHHHHHHCC T ss_pred CCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 97799999866899989999997187899999999998499788299999999866879892799999999999999986 Q ss_pred HC Q ss_conf 02 Q gi|254780690|r 352 KK 353 (354) Q Consensus 352 lk 353 (354) +. T Consensus 81 ld 82 (83) T 3bzy_B 81 LD 82 (83) T ss_dssp CC T ss_pred CC T ss_conf 15 No 6 >2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1 Probab=99.93 E-value=4.3e-26 Score=225.33 Aligned_cols=82 Identities=28% Similarity=0.312 Sum_probs=81.1 Q ss_pred CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 55307888976888888889980765899999999997399788688999999972889894898999999999999973 Q gi|254780690|r 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 (354) Q Consensus 272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~ 351 (354) ||||||||+||+++++||+|+|||+|.+|++||++|+++||||++|++|||+||.++++|++||+++|++||+||+|||+ T Consensus 1 PTH~AVAL~Y~~~~~~aP~VvAkG~g~~A~~I~~~A~~~gIPiv~~~~LAr~L~~~~~~g~~IP~ely~aVA~IL~~v~~ 80 (93) T 2vt1_B 1 PTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 80 (93) T ss_dssp CCSEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCSSEECCTTTHHHHHHHHHHHHH T ss_pred CCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 96699999857899989999985185999999999998599888499999999974889881789999999999999999 Q ss_pred HC Q ss_conf 02 Q gi|254780690|r 352 KK 353 (354) Q Consensus 352 lk 353 (354) ++ T Consensus 81 l~ 82 (93) T 2vt1_B 81 VE 82 (93) T ss_dssp C- T ss_pred HH T ss_conf 87 No 7 >3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A Probab=99.66 E-value=9.5e-17 Score=151.39 Aligned_cols=52 Identities=29% Similarity=0.445 Sum_probs=50.4 Q ss_pred HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC Q ss_conf 8406998999999754489989999999999999998898607768699873 Q gi|254780690|r 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 (354) Q Consensus 220 k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN 271 (354) +.+|||||||||||||+||||+||++||++|||+++++|+.+||+||||||| T Consensus 3 h~~~MskqEvKdE~Ke~EGdP~vK~~rR~~~~e~~~~~~~~~V~~AdvVitN 54 (54) T 3bzy_A 3 HMASMSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKN 54 (54) T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 4465799999999986529999999999999999997998507889987309 No 8 >3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1 Probab=99.61 E-value=7.6e-16 Score=144.23 Aligned_cols=48 Identities=25% Similarity=0.525 Sum_probs=47.7 Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC Q ss_conf 998999999754489989999999999999998898607768699873 Q gi|254780690|r 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 (354) Q Consensus 224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN 271 (354) ||||||||||||+||||+||++||++|||+++++|+.+||+||||||| T Consensus 1 Msk~EvK~E~Ke~EGdP~vK~~rr~~~~el~~~~~~~~V~~AdvVvtN 48 (48) T 3c01_A 1 MDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVAN 48 (48) T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC T ss_conf 988999999986419999999999999999996898407889976209 No 9 >2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1 Probab=99.58 E-value=6e-17 Score=152.96 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=50.4 Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC Q ss_conf 406998999999754489989999999999999998898607768699873 Q gi|254780690|r 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 (354) Q Consensus 221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN 271 (354) +||||||||||||||+||||+||++||++|||+++++++++||+||||||| T Consensus 2 dLkMskqEvK~E~K~~EGdP~vK~~rr~~~~el~~~~~~~~V~~AdvVitN 52 (52) T 2vt1_A 2 DMMMDKQEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMN 52 (52) T ss_dssp ------------------------------CCCSCHHHHHHHHTCSEEEEC T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 887788999999886529999999999999999996898508889987209 No 10 >1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} SCOP: c.24.1.2 Probab=77.10 E-value=1.8 Score=22.49 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=46.5 Q ss_pred HHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE--ECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 754489-9899999999999999988986077686998--7355307888976888888889980765899999999997 Q gi|254780690|r 233 IKQSYG-NPIIKNRQKSIARSRIRHKMMEATSRATIII--TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 (354) Q Consensus 233 ~K~~EG-dP~iK~~~r~~~re~~~~~~~~~V~~A~vvi--tNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~ 309 (354) +|-.|| ||+|-..+++- +=|.|| .||++ .++...-...||+.|-+ T Consensus 54 ~k~~~gg~p~i~d~I~~g--------------~I~lVIn~~~~~~------------------~~~~~~D~~~IRR~a~~ 101 (126) T 1wo8_A 54 LSGPLGGDLQIGARVAEG--------------KVLAVVFLQDPLT------------------AKPHEPDVQALMRVCNV 101 (126) T ss_dssp CCTTTTHHHHHHHHHHTT--------------CEEEEEEECCTTS------------------CCTTHHHHHHHHHHHHH T ss_pred EECCCCCCCCHHHHHHCC--------------CCCEEEEECCCCC------------------CCCCCHHHHHHHHHHHH T ss_conf 745889998999999859--------------9778998069888------------------86450008999999997 Q ss_pred CCCCEEECHHHHHHHHHHCCCCC Q ss_conf 39978868899999997288989 Q gi|254780690|r 310 HNIPIFEEPSLARSLFKQVPINS 332 (354) Q Consensus 310 ~~Vpive~~~LAR~Ly~~~~ig~ 332 (354) |+||.+-|...|+++-...+-|. T Consensus 102 ~~IP~~T~~~~A~a~v~al~~g~ 124 (126) T 1wo8_A 102 HGVPLATNLVAAEALIAWIRKGT 124 (126) T ss_dssp TTCCEECSHHHHHHHHHHHHHTC T ss_pred CCCCEEECHHHHHHHHHHHHHCC T ss_conf 39988978999999999998269 No 11 >2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} Probab=76.42 E-value=3.1 Score=20.58 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=35.1 Q ss_pred CCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHC Q ss_conf 768699873553078889768888888899807658999999999973997886889999999728 Q gi|254780690|r 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 (354) Q Consensus 263 ~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~ 328 (354) .+-|.||.=|++- ...-.-...||+.|-+++||++-|...|+++-... T Consensus 95 g~i~lVINtp~~~------------------~~~~~dg~~IRR~Av~~~Ip~~T~i~~A~~~v~al 142 (143) T 2yvq_A 95 GSIDLVINLPNNN------------------TKFVHDNYVIRRTAVDSGIPLLTNFQVTKLFAEAV 142 (143) T ss_dssp TSCCEEEECCCCC------------------GGGHHHHHHHHHHHHHTTCCEECSHHHHHHHHHTC T ss_pred CCEEEEEECCCCC------------------CCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHH T ss_conf 9759999867899------------------76566579999999975999886899999999985 No 12 >1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A Probab=74.86 E-value=2.8 Score=21.00 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=29.6 Q ss_pred CCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCC Q ss_conf 76589999999999739978868899999997288 Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 (354) Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ 329 (354) +...-...||+.|-+|+||.+-|...|+++-.... T Consensus 97 ~~~~D~~~IRR~av~~~IP~~T~~~tA~a~i~ai~ 131 (152) T 1b93_A 97 PHDPDVKALLRLATVWNIPVATNVATADFIIQSPH 131 (152) T ss_dssp TTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTSGG T ss_pred CCCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHH T ss_conf 45320899999999819736756999999999798 No 13 >2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1 Probab=72.18 E-value=2.8 Score=20.91 Aligned_cols=22 Identities=5% Similarity=0.170 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999983 Q gi|254780690|r 147 NFMKSFVKIILVGTIITISLTE 168 (354) Q Consensus 147 el~KsllKv~li~~v~~~~i~~ 168 (354) .|+.+++-++++++++|+++.. T Consensus 94 ~Fl~aiInFlIiA~vvyFlivk 115 (174) T 2oar_A 94 VLLSAAINFFLIAFAVYFLVVL 115 (174) T ss_dssp HHHHHHHHHHHHHHHHHHHTHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999 No 14 >1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1 Probab=66.14 E-value=4 Score=19.74 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=23.8 Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998999999754489989999999999999998 Q gi|254780690|r 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354) Q Consensus 224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354) ++++=+|=.-=+++|||.||.+||+.-+++..- T Consensus 46 L~~~llkLD~Ie~~G~~~vR~~Rk~~v~~vq~~ 78 (87) T 1m62_A 46 LTKELLELDSVETGGQDSVRQARKEAVCKIQAI 78 (87) T ss_dssp HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999868956699899999999999999999 No 15 >1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1 Probab=65.87 E-value=4.1 Score=19.67 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=24.0 Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998999999754489989999999999999998 Q gi|254780690|r 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354) Q Consensus 224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354) ++++=+|=.-=|++|||.||.+||+.-+++..- T Consensus 65 L~~~LlkLD~Id~~G~~~vR~~RK~~v~~vQ~~ 97 (111) T 1uk5_A 65 LTKELLALDSVDPEGRADVRQARRDGVRKVQTI 97 (111) T ss_dssp HHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999867846689799999999999999999 No 16 >1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1 Probab=64.93 E-value=4.4 Score=19.44 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=22.4 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 8999999754489989999999999999998 Q gi|254780690|r 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354) Q Consensus 226 kqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354) ++=+|=.-=+++|||.+|.+||+.-+++..- T Consensus 55 ~~llkLD~I~~~G~~~vR~~RK~~v~~vQ~~ 85 (99) T 1ugo_A 55 KQLFEIDSVDTEGKGDIQQARKRAAQETERL 85 (99) T ss_dssp HHHHHHHHSCCSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999857826689799999999999999999 No 17 >1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1 Probab=61.95 E-value=5.3 Score=18.75 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=24.3 Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998999999754489989999999999999998 Q gi|254780690|r 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354) Q Consensus 224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354) .+++=+|=.-=+++|||.||.+||+.-+++..- T Consensus 59 L~~~LlkLD~Ie~~G~~~vR~~RK~~v~~vq~~ 91 (99) T 1m7k_A 59 LTKELLELDSVETGGQDSVRQARKEAVCKIQAI 91 (99) T ss_dssp HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999968956699799999999999999999 No 18 >1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2 Probab=61.01 E-value=7 Score=17.80 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=44.2 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCC Q ss_conf 54489989999999999999998898607768699873553078889768888888899807658999999999973997 Q gi|254780690|r 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 (354) Q Consensus 234 K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vp 313 (354) +..+|||+|=..++. .+=|.||-=|. +... +....-...||+.|-+++|| T Consensus 82 ~~~gg~p~I~d~I~~--------------geI~lVINt~d---------~~~~-------~~~~~D~~~IRR~av~~~IP 131 (178) T 1vmd_A 82 GPLGGDQQIGAMIAE--------------GKIDVLIFFWD---------PLEP-------QAHDVDVKALIRIATVYNIP 131 (178) T ss_dssp GGGTHHHHHHHHHHT--------------TSCCEEEEECC---------SSSC-------CTTSCCHHHHHHHHHHTTCC T ss_pred CCCCCCCCHHHHHHC--------------CCCCEEEECCC---------CCCC-------CCCHHHHHHHHHHHHHHCCC T ss_conf 378888529999986--------------98218998169---------9777-------76602699999999984972 Q ss_pred EEECHHHHHHHHHHCC Q ss_conf 8868899999997288 Q gi|254780690|r 314 IFEEPSLARSLFKQVP 329 (354) Q Consensus 314 ive~~~LAR~Ly~~~~ 329 (354) ++-|..-|+++-.... T Consensus 132 ~~Ttl~tA~a~i~ai~ 147 (178) T 1vmd_A 132 VAITRSTADFLISSPL 147 (178) T ss_dssp EESSHHHHHHHHHSGG T ss_pred EEECHHHHHHHHHHHH T ss_conf 3546999999999897 No 19 >3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens} Probab=58.55 E-value=8.4 Score=17.20 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=25.7 Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998999999754489989999999999999998 Q gi|254780690|r 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354) Q Consensus 224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354) ++++=+|=.-=+++|||.+|.+||+.-+++.+- T Consensus 69 L~k~LLkLD~Ie~~G~~~vR~~RK~~Vk~VQ~~ 101 (142) T 3a8y_C 69 LTKQLLALDAVDPQGEEKCKAARKQAVRLAQNI 101 (142) T ss_dssp HHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999848847789699999999999999999 No 20 >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis W83} Probab=51.39 E-value=11 Score=16.36 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=12.6 Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 934303320126679999999999 Q gi|254780690|r 131 SLREGIKRIYSINNLVNFMKSFVK 154 (354) Q Consensus 131 NPi~GlKriFS~k~lvel~KsllK 154 (354) ||-+=-.+.+|...+-+++.-.-+ T Consensus 190 ~P~NPTG~~~s~e~~~~i~~~a~~ 213 (437) T 3g0t_A 190 NPNNPTWQCMTDEELRIIGELATK 213 (437) T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 998998775312689999887525 No 21 >3dci_A Arylesterase; SGNH_hydrolase subfamily, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.00A {Agrobacterium tumefaciens str} Probab=46.87 E-value=12 Score=15.86 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=51.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHH Q ss_conf 99999999998898607768699873553078889768888888899807658999999999973997886889999999 Q gi|254780690|r 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 (354) Q Consensus 246 ~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly 325 (354) .+++...+.........+.+.+++..|+.+. ..+.....-.-...-....+..+++.|++.++|.+.--. .. T Consensus 129 ~~~l~~~~~~~~~~~~~~~~~ill~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~----~~ 200 (232) T 3dci_A 129 MRRLAQIVETFIYKPREAVPKLLIVAPPPCV----AGPGGEPAGGRDIEQSMRLAPLYRKLAAELGHHFFDAGS----VA 200 (232) T ss_dssp HHHHHHHHHHCCCSSTTCCCEEEEEECCCCC----CCTTSSCGGGCCHHHHTTHHHHHHHHHHHHTCEEEEGGG----TC T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCHH----CC T ss_conf 9999999998300220142110351278756----664322000158999999999999999870986974500----04 Q ss_pred HHCCCCC-CCCHHHHHHHHHHHHHHHH Q ss_conf 7288989-4898999999999999973 Q gi|254780690|r 326 KQVPINS-AIPPVFYKAVAQLIYKIYH 351 (354) Q Consensus 326 ~~~~ig~-~Ip~~~y~aVA~il~~v~~ 351 (354) .....|. --.++=|+.+|+.++-..+ T Consensus 201 ~~~~~DgvHpn~~G~~~iA~~i~~~I~ 227 (232) T 3dci_A 201 SASPVDGVHLDASATAAIGRALAAPVR 227 (232) T ss_dssp CCCTTTSSSCCHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 489976769699999999999999999 No 22 >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Probab=46.69 E-value=7.8 Score=17.47 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=24.7 Q ss_pred HHHHHHHHCCCCEEEC--------------------HHHHHHHHHHC---CCCCCCCHHHHHHHHHHH Q ss_conf 9999999739978868--------------------89999999728---898948989999999999 Q gi|254780690|r 302 KMRKIAYEHNIPIFEE--------------------PSLARSLFKQV---PINSAIPPVFYKAVAQLI 346 (354) Q Consensus 302 ~Ir~~A~~~~Vpive~--------------------~~LAR~Ly~~~---~ig~~Ip~~~y~aVA~il 346 (354) ++.+.-+++||++-.. =|-|..+++++ ++...+..+--+-|+++| T Consensus 294 ~l~~~L~~~gI~~~~~y~~plh~~~~~~~~~~~~~~~pnae~l~~~~l~LP~~~~Lt~~di~~I~~~i 361 (373) T 3frk_A 294 ELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKI 361 (373) T ss_dssp HHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHH T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHH T ss_conf 99999997799747427974001988885699889998999998397978899998999999999999 No 23 >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* Probab=45.77 E-value=8.4 Score=17.21 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=37.6 Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE-----EECCCCEEEEEEECCCCCCCCEEEEEC Q ss_conf 406998999999754489989999999999999998898607768699-----873553078889768888888899807 Q gi|254780690|r 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII-----ITNPTHYALALRYIQTENDAPVLVAKG 295 (354) Q Consensus 221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vv-----itNPTH~AVAL~Y~~~~~~aP~vvaKG 295 (354) +.|||-=.--==.-|.+.=++...+||++.+.... .+++.+.-.++ .+++.++.-.+++++.+..-. - T Consensus 247 n~rm~~~~Aaigl~qL~~l~~~~~~R~~~~~~y~~--~L~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~ 319 (418) T 2c81_A 247 NYCLSEFQSAILLDQLQELDDKNAIREKNAMFLND--ALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGL-----N 319 (418) T ss_dssp BCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTC-----C T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHCCCC-----C T ss_conf 45542889999999998788999999999999999--8348999603677887775102799999812540678-----9 Q ss_pred CCHHHHHHHHHHHHCC Q ss_conf 6589999999999739 Q gi|254780690|r 296 QNLIAKKMRKIAYEHN 311 (354) Q Consensus 296 ~~~~A~~Ir~~A~~~~ 311 (354) +|.+....++.....+ T Consensus 320 Rd~l~~~L~~~~~~~~ 335 (418) T 2c81_A 320 ADQFCEILREKLNMGT 335 (418) T ss_dssp HHHHHHHHHHHHTCCT T ss_pred HHHHHHHHHHCCCCCE T ss_conf 9999999984779980 No 24 >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B* Probab=45.74 E-value=13 Score=15.73 Aligned_cols=30 Identities=7% Similarity=0.253 Sum_probs=18.1 Q ss_pred CCCCEEEEEEECCC-------CCCCCEEEEECCCHHH Q ss_conf 35530788897688-------8888889980765899 Q gi|254780690|r 271 NPTHYALALRYIQT-------ENDAPVLVAKGQNLIA 300 (354) Q Consensus 271 NPTH~AVAL~Y~~~-------~~~aP~vvaKG~~~~A 300 (354) |+.|.+||.|-... .+..|.|+++|.+... T Consensus 1006 ~~phv~vA~rl~~r~~~~p~~GdrI~YViv~~~~~~~ 1042 (1193) T 2gv9_A 1006 RLAHLTVYYKLMARRAQVPSIKDRIPYVIVAQTREVE 1042 (1193) T ss_dssp -------------------CCTTTSCBEEBCC----- T ss_pred CCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC T ss_conf 8169999999985389999998999899997987766 No 25 >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* Probab=42.12 E-value=11 Score=16.22 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=32.0 Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEE-----------------CHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHH Q ss_conf 8899807658999999999973997886-----------------889999999728---8989489899999999999 Q gi|254780690|r 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFE-----------------EPSLARSLFKQV---PINSAIPPVFYKAVAQLIY 347 (354) Q Consensus 289 P~vvaKG~~~~A~~Ir~~A~~~~Vpive-----------------~~~LAR~Ly~~~---~ig~~Ip~~~y~aVA~il~ 347 (354) |+.+.+....-..++.+.-+++||++-. +-|-|..++.+. ++...+..+--+-|++.|. T Consensus 309 ~i~~~~~~~~~rd~l~~~L~~~gI~~~~~~~plh~~~~y~~~~~~~~p~a~~l~~~~l~LP~~~~lt~~di~~Ii~~ik 387 (391) T 3dr4_A 309 TVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALD 387 (391) T ss_dssp EEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHCHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHH T ss_conf 9997655603299999999977998676276544298877468899979999982979936999999999999999999 No 26 >3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A Probab=41.46 E-value=9.7 Score=16.71 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=27.7 Q ss_pred HHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 8999999972---8898948989999999999999730 Q gi|254780690|r 318 PSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYHK 352 (354) Q Consensus 318 ~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~l 352 (354) =|-|..++.+ .++......+.-+-|++.+..+|++ T Consensus 398 ~pna~~i~~~~l~LP~~~~Lt~~di~~Ii~~ik~f~~~ 435 (437) T 3bb8_A 398 LTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFGL 435 (437) T ss_dssp CHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTTT T ss_pred CHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 98999998294986489999999999999999999671 No 27 >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Probab=40.19 E-value=9.5 Score=16.78 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=9.7 Q ss_pred CCCHHHHHHHHHHCCCCC Q ss_conf 658787999998578751 Q gi|254780690|r 13 APSSKKIEDALNEGNAPI 30 (354) Q Consensus 13 ~PT~kRL~dARekGqV~k 30 (354) .+++.|.++..++=.++. T Consensus 38 d~~~~~~~~~a~~~~~~~ 55 (362) T 1ydw_A 38 SRSLEKAKAFATANNYPE 55 (362) T ss_dssp CSSHHHHHHHHHHTTCCT T ss_pred CCCHHHHHHHHHHHCCCC T ss_conf 799999999999849985 No 28 >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* Probab=37.60 E-value=14 Score=15.40 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=28.3 Q ss_pred HHHHHHHHCCCCEEE-----------------CHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHH Q ss_conf 999999973997886-----------------889999999728---89894898999999999999 Q gi|254780690|r 302 KMRKIAYEHNIPIFE-----------------EPSLARSLFKQV---PINSAIPPVFYKAVAQLIYK 348 (354) Q Consensus 302 ~Ir~~A~~~~Vpive-----------------~~~LAR~Ly~~~---~ig~~Ip~~~y~aVA~il~~ 348 (354) .+.+.-+++||++-. +=|-|+.+++++ ++...+..+-.+-|+++|.- T Consensus 293 ~l~~~L~~~gI~~~~~y~~pl~~~~~~~~~~~~~pna~~i~~~~l~LP~~~~lt~~ei~~I~~~l~~ 359 (367) T 3nyt_A 293 SVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367) T ss_dssp HHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC T ss_pred HHHHHHHHCCCCEEEECCCCHHHCHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHC T ss_conf 9999999879986740697334495640778999899999849797778899899999999999946 No 29 >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Probab=36.47 E-value=14 Score=15.37 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=29.2 Q ss_pred HHHHHHHHCCCCEEE------------------CHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHH Q ss_conf 999999973997886------------------88999999972---8898948989999999999999 Q gi|254780690|r 302 KMRKIAYEHNIPIFE------------------EPSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKI 349 (354) Q Consensus 302 ~Ir~~A~~~~Vpive------------------~~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v 349 (354) ++.+.-+++||++-. +=|-|..++++ .++...+..+--+-|++++.-+ T Consensus 314 ~l~~~L~~~GI~~~~~y~p~lh~~~~~~~~~~~~~P~ae~l~~~~l~LP~~~~Lt~~di~~I~~~IK~~ 382 (424) T 2po3_A 314 LVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLC 382 (424) T ss_dssp HHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 999999987998750069740009776289989998999998497989899998999999999999999 No 30 >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Probab=36.39 E-value=12 Score=16.10 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=32.8 Q ss_pred HHHHHHHHHCCCCEEEC--H------------------HHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999739978868--8------------------999999972---8898948989999999999999730 Q gi|254780690|r 301 KKMRKIAYEHNIPIFEE--P------------------SLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYHK 352 (354) Q Consensus 301 ~~Ir~~A~~~~Vpive~--~------------------~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~l 352 (354) .++.+.-+++||++-.. . |-|..++.+ .++...+..+--+-|++.|...+++ T Consensus 321 d~l~~~L~~~GI~t~~~y~~plh~~p~~~~~~~~~~~~pnae~i~~~~l~LP~~~~Lt~~di~~Ii~~Ik~f~~k 395 (399) T 2oga_A 321 DELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAER 395 (399) T ss_dssp HHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHCCCCEEEECCCCHHHCHHHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999997799876536860443988773599889998999998497978689998999999999999999998 No 31 >1f6g_A Voltage-gated potassium channel; integral membrane protein, cytoplasmic domains, proton transport, membrane protein; NMR {Streptomyces lividans} SCOP: f.14.1.1 Probab=36.33 E-value=17 Score=14.68 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=19.8 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 999999999999976679-9999998406998999999754489989999999999999 Q gi|254780690|r 196 LIMILLFIATLTVLDIGW-SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 (354) Q Consensus 196 ~~~~~~~~~via~iD~~~-qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~ 253 (354) +..++++..+++.+.-.+ ++..-.++..+-..+...+....+.+-.++.+.++++++. T Consensus 97 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~k~l 155 (160) T 1f6g_A 97 VAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERML 155 (160) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999999999 No 32 >2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A Probab=36.17 E-value=18 Score=14.67 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=62.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCE------EEEEEECCCCCCCC-----EEEEECCCHHHHHHHHH Q ss_conf 99899999999999999988986077686998735530------78889768888888-----89980765899999999 Q gi|254780690|r 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY------ALALRYIQTENDAP-----VLVAKGQNLIAKKMRKI 306 (354) Q Consensus 238 GdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~------AVAL~Y~~~~~~aP-----~vvaKG~~~~A~~Ir~~ 306 (354) -||+-|..+....+-......... -.++++.+. |++ ...+++..+....| .++.=-.|.-=..+|++ T Consensus 95 ~~pe~k~~~~~~~~~~~l~~~A~~-~g~~~l~~G-t~~~D~~E~~~gikt~~~~Ggl~~~~~~~~iePL~~L~K~EVR~l 172 (308) T 2dpl_A 95 TDPEEKRKIIGRVFIEVFEEVAKK-IGAEYLIQG-TIAPDWIESQGKIKSHHNVGGLPEKLNLKLIEPLRDLYKDEVREL 172 (308) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HTCSEEECC-CCCC---------------------CCCEEECTTTTCCHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-CCCCEECCC-CCCCCHHHHCCCEEEEECCCCCCHHHCCCHHHHHHHHCHHHHHHH T ss_conf 995897627608999999999998-399585134-020425541353267615788626535441237887456999999 Q ss_pred HHHCCCC--EEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 9973997--886889999999728898948989999999999 Q gi|254780690|r 307 AYEHNIP--IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 (354) Q Consensus 307 A~~~~Vp--ive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il 346 (354) |++.|+| ++..+|-|----+ ..++.+|.+|--+.|-+.= T Consensus 173 a~~LGlP~~i~~K~P~pgpgl~-i~~~~~it~e~l~~v~~a~ 213 (308) T 2dpl_A 173 AKFLGLPEKIYNRMPFPGPGLA-VRVIGEVTPEKIRIVREAN 213 (308) T ss_dssp HHHTTCCHHHHTCCCCCTTGGG-GGBSSSCCHHHHHHHHHHH T ss_pred HHHHCCCHHHHCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH T ss_conf 9980999899288999850124-5458633388887479999 No 33 >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Probab=34.71 E-value=12 Score=16.09 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=57.5 Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECC-CHH Q ss_conf 4069989999997544899899999999999999988986077686998735530788897688888888998076-589 Q gi|254780690|r 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ-NLI 299 (354) Q Consensus 221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~-~~~ 299 (354) +.|||--.-.=-.-|.+.-+++..+||+........ ..+.+. ..+..|.+-. ...-..-|..+-+.. +.- T Consensus 241 N~rmsel~Aaig~~qL~~l~~~~~~r~~~~~~~~~~--l~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 311 (393) T 1mdo_A 241 KYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQA--MADLPF--QPLSLPSWEH-----IHAWHLFIIRVDEARCGIT 311 (393) T ss_dssp BCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--HHTSSC--EECCCCSSCE-----ECCCSCEEEECCHHHHSSC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCC--CCCCCCCCCC-----CCCEEEEEEECCHHHCCCC T ss_conf 656405778775100110379999999999999998--348998--6567631124-----3200332222243224134 Q ss_pred HHHHHHHHHHCCCCEE-------ECH-----------HHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9999999997399788-------688-----------999999972---8898948989999999999999730 Q gi|254780690|r 300 AKKMRKIAYEHNIPIF-------EEP-----------SLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYHK 352 (354) Q Consensus 300 A~~Ir~~A~~~~Vpiv-------e~~-----------~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~l 352 (354) -.++.+.-+++||++- ..| |-|..++++ .++...+..+-.+-|+++|..+... T Consensus 312 Rd~l~~~L~~~GI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~l~~v~~~ 385 (393) T 1mdo_A 312 RDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQ 385 (393) T ss_dssp HHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHCCCCEEEECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 99999999987998443685122289989528878998999998497987489999999999999999999966 No 34 >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Probab=34.22 E-value=13 Score=15.73 Aligned_cols=48 Identities=15% Similarity=-0.010 Sum_probs=24.4 Q ss_pred HHHHHHHHHHHCCCCE---E-----E--------------CHHHHHHHHHH---CCCCCCCCHHHHHHHHHHH Q ss_conf 9999999999739978---8-----6--------------88999999972---8898948989999999999 Q gi|254780690|r 299 IAKKMRKIAYEHNIPI---F-----E--------------EPSLARSLFKQ---VPINSAIPPVFYKAVAQLI 346 (354) Q Consensus 299 ~A~~Ir~~A~~~~Vpi---v-----e--------------~~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il 346 (354) .-.++.+.-+++||.. . . +=|-|..++.+ .++...+..+--+-|++++ T Consensus 317 ~Rd~l~~~L~~~gI~tr~~~~~~~~~~~~~~~~~~~~~~~~~pnae~i~~~~l~LP~~~~lt~~ei~~I~~~i 389 (390) T 3b8x_A 317 IRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390) T ss_dssp CHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHCCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHC T ss_conf 3999999999779974642764211377888721877679998999998398988589978999999999861 No 35 >1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A Probab=33.42 E-value=16 Score=14.90 Aligned_cols=22 Identities=5% Similarity=-0.004 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 76679999999840699899999 Q gi|254780690|r 209 LDIGWSYHQWYSKLKMSKQEIKD 231 (354) Q Consensus 209 iD~~~qr~~~~k~lkMskqEvK~ 231 (354) +|..+.-| |.++.++|++|.++ T Consensus 288 lDq~L~Py-ye~Dg~it~eeA~E 309 (787) T 1r9d_A 288 FDQYMYPY-YENDKNITDKFAQE 309 (787) T ss_dssp HHHHHHHH-HHHCSSCCHHHHHH T ss_pred HHHHHHHH-HHHCCCCCHHHHHH T ss_conf 89999999-98458989999999 No 36 >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 Probab=33.28 E-value=17 Score=14.76 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=22.9 Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHH Q ss_conf 88998076589999999999739978868899999 Q gi|254780690|r 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323 (354) Q Consensus 289 P~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~ 323 (354) =+|+++|.. ....+.+.|++++||++..+--.-. T Consensus 83 ~iIvt~~~~-~~~~l~~~a~~~~ipll~t~~~t~~ 116 (314) T 1ko7_A 83 AIIVTRDLE-PPEELIEAAKEHETPLITSKIATTQ 116 (314) T ss_dssp CEEECTTCC-CCHHHHHHHHHTTCCEEECCSCHHH T ss_pred EEEEECCCC-CCHHHHHHHHHHCCEEEECCCCHHH T ss_conf 899989999-9999999999839749983884899 No 37 >2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl radical, hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus} Probab=32.46 E-value=14 Score=15.56 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=25.0 Q ss_pred CCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 76589999999999739978868899999997288989489899999999999 Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 (354) Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~ 347 (354) +.+++...|-+.+++.+.| .|-| ++.+.+-.|++++..+++.+. T Consensus 347 a~N~ls~liLea~~~l~~~---~P~l------tvR~~~~~p~~fl~~a~e~i~ 390 (776) T 2f3o_A 347 ATNELTYLMLEVTDRLRLR---QPNV------HVRINKGSPESFLKRLAEAIS 390 (776) T ss_dssp CCCHHHHHHHHHHHHHCCS---CSEE------EEEECTTSCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCC---CCCE------EEEECCCCCHHHHHHHHHHHH T ss_conf 6677889999999856999---9947------999889999999999999960 No 38 >1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus HB8} SCOP: c.124.1.6 Probab=31.94 E-value=20 Score=14.17 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.6 Q ss_pred CCHHHHHHHHHH Q ss_conf 998999999754 Q gi|254780690|r 224 MSKQEIKDEIKQ 235 (354) Q Consensus 224 MskqEvK~E~K~ 235 (354) |||+|++++.++ T Consensus 1 m~K~~lRk~~~~ 12 (184) T 1wkc_A 1 MTKAELRRRARA 12 (184) T ss_dssp CCHHHHHHHHHH T ss_pred CCHHHHHHHHHH T ss_conf 988999999999 No 39 >1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A Probab=31.69 E-value=2.3 Score=21.58 Aligned_cols=19 Identities=42% Similarity=0.480 Sum_probs=15.0 Q ss_pred CCCCEEEECC---CCEEEEEEE Q ss_conf 7686998735---530788897 Q gi|254780690|r 263 SRATIIITNP---THYALALRY 281 (354) Q Consensus 263 ~~A~vvitNP---TH~AVAL~Y 281 (354) .++|-+|.|| ||+++||+= T Consensus 67 ~~~~giIiNpga~Th~S~al~D 88 (146) T 1h05_A 67 DAAEPVILNAGGLTHTSVALRD 88 (146) T ss_dssp HHTCCEEEECGGGGGTCHHHHH T ss_pred CCCCEEEECCCHHEEEHHHHHH T ss_conf 4686179635112120251899 No 40 >3if2_A Aminotransferase; YP_265399.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Probab=31.44 E-value=21 Score=14.11 Aligned_cols=25 Identities=0% Similarity=0.011 Sum_probs=15.2 Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 9343033201266799999999999 Q gi|254780690|r 131 SLREGIKRIYSINNLVNFMKSFVKI 155 (354) Q Consensus 131 NPi~GlKriFS~k~lvel~KsllKv 155 (354) ||-+=-.+.+|...+-++++-.-|- T Consensus 214 ~P~NPTG~~~s~~~l~~l~~~a~~~ 238 (444) T 3if2_A 214 RPTNPTGNVLTDEEMAHLAEIAKRY 238 (444) T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 9949847558999999999988743 No 41 >3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} Probab=31.35 E-value=21 Score=14.10 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.4 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEECH Q ss_conf 9980765899999999997399788688 Q gi|254780690|r 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 (354) Q Consensus 291 vvaKG~~~~A~~Ir~~A~~~~Vpive~~ 318 (354) |.+=|-..+-..+.+.+++.|||++|.. T Consensus 111 iy~CGP~~M~~~v~~~l~~~GvP~~~~~ 138 (142) T 3lyu_A 111 VFMVGPVGDQKQVFEVVKEYGVPMLEHH 138 (142) T ss_dssp EEEESCHHHHHHHHHHHHHHTCCBC--- T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEECC T ss_conf 9996999999999999998198988012 No 42 >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Probab=30.77 E-value=21 Score=14.03 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=11.6 Q ss_pred EEEECCCHHHHHHHHHHHHCCC Q ss_conf 9980765899999999997399 Q gi|254780690|r 291 LVAKGQNLIAKKMRKIAYEHNI 312 (354) Q Consensus 291 vvaKG~~~~A~~Ir~~A~~~~V 312 (354) ++..+.+.-+..+.+.-++++| T Consensus 296 i~i~~~g~~g~~~~~~L~~~gI 317 (446) T 2x3l_A 296 LLIKYEGFTGHDIQNWFMNAHI 317 (446) T ss_dssp EEEECTTSCHHHHHHHHHHTTE T ss_pred EEECCCCCCHHHHHHHHHHCCE T ss_conf 9965778748999999987896 No 43 >1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A Probab=30.62 E-value=19 Score=14.41 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=38.2 Q ss_pred CCCEEEECCCCEEEEEEECCC-------CCCCCEEEEECCCHHHHHHHHHHHH----CC-----CCEEECHHHHHHHHHH Q ss_conf 686998735530788897688-------8888889980765899999999997----39-----9788688999999972 Q gi|254780690|r 264 RATIIITNPTHYALALRYIQT-------ENDAPVLVAKGQNLIAKKMRKIAYE----HN-----IPIFEEPSLARSLFKQ 327 (354) Q Consensus 264 ~A~vvitNPTH~AVAL~Y~~~-------~~~aP~vvaKG~~~~A~~Ir~~A~~----~~-----Vpive~~~LAR~Ly~~ 327 (354) ....||+|.+-. .++-+++- -..|..|++||+| |.+-.+ .+ .-+|-|+++|+.| . T Consensus 282 ~~~~Vv~sG~~~-pgl~L~r~s~e~~~~~~~ADLIIaKGMG------ra~~tN~~a~~~cd~l~L~~vKc~~vA~~l--G 352 (367) T 1xfi_A 282 SKLLIANSGNDL-PVIDLSRVSQELAYLSSDADLVIVEGMG------RGIETNLYAQFKCDSLKIGMVKHLEVAEFL--G 352 (367) T ss_dssp TTEEEEECCCCS-SSCCTTSBCHHHHHHHTTCSEEEEESHH------HHTTBSTTCCCSSEEEEEEECCCHHHHHHH--T T ss_pred CCCEEECCCCCC-CCCCHHHCCHHHHHHHHCCCEEEECCCC------CHHHCCCHHHCCCCEEHHHHHCCHHHHHHH--C T ss_conf 560893799998-8869476899999998449999984874------014212112317882223442689999994--9 Q ss_pred CCCCCCC Q ss_conf 8898948 Q gi|254780690|r 328 VPINSAI 334 (354) Q Consensus 328 ~~ig~~I 334 (354) +++|+-| T Consensus 353 ~~~~d~V 359 (367) T 1xfi_A 353 GRLYDCV 359 (367) T ss_dssp CCTTCEE T ss_pred CCCCCEE T ss_conf 9611379 No 44 >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* Probab=30.44 E-value=17 Score=14.78 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=36.8 Q ss_pred CHHHHHHHHHHHHCCCCEE-----------------ECHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 5899999999997399788-----------------688999999972---88989489899999999999997 Q gi|254780690|r 297 NLIAKKMRKIAYEHNIPIF-----------------EEPSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIY 350 (354) Q Consensus 297 ~~~A~~Ir~~A~~~~Vpiv-----------------e~~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~ 350 (354) ..--.++.+.-+++||++- .+.|-|..++++ .++...+..+--+-|++++..+. T Consensus 311 ~~~~~~l~~~L~~~gI~~~~~~~~lh~~~~~~~~~~~~~pnae~l~~~~i~LP~~~~lt~~di~~I~~~i~~~l 384 (394) T 1o69_A 311 HPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSI 384 (394) T ss_dssp CHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCEEEECCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHH T ss_conf 10299999999977998786086423196550688789989999983979897999889999999999999999 No 45 >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Probab=29.69 E-value=22 Score=13.90 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=23.8 Q ss_pred CCHHHHHHHHHHHHCCCCEEECHHHHHHHH Q ss_conf 658999999999973997886889999999 Q gi|254780690|r 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 (354) Q Consensus 296 ~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly 325 (354) .+.++.++|..|++++|||+----|-|... T Consensus 335 ~~~i~~~Lk~lA~e~~v~vi~lsQlnR~~~ 364 (444) T 3bgw_A 335 ISQISRDLKKMARELDVVVIALSQLSRQVE 364 (444) T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECCGGGG T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCC T ss_conf 999999999999980996899633685311 No 46 >3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A* Probab=28.77 E-value=3.7 Score=20.04 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=18.7 Q ss_pred CCCCEEEECC---CCEEEEEEECCCCCCCCEE Q ss_conf 7686998735---5307888976888888889 Q gi|254780690|r 263 SRATIIITNP---THYALALRYIQTENDAPVL 291 (354) Q Consensus 263 ~~A~vvitNP---TH~AVAL~Y~~~~~~aP~v 291 (354) .++|-+|-|| ||+++||+=--.....|.| T Consensus 93 ~~~dgIIINPga~ThtS~Al~DAl~~~~~P~I 124 (172) T 3n8k_A 93 DAAEPVILNAGGLTHTSVALRDACAELSAPLI 124 (172) T ss_dssp HHTCCEEEECGGGGGTCHHHHHHHTTCCSCEE T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCCEE T ss_conf 26763796350342344999999983599889 No 47 >1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli} Probab=28.27 E-value=23 Score=13.72 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=32.1 Q ss_pred HHHHHHHHHHH-HHHHHCCCCCEEEEC------CCCEEEEEEECCCCCCCC Q ss_conf 99999999998-898607768699873------553078889768888888 Q gi|254780690|r 246 QKSIARSRIRH-KMMEATSRATIIITN------PTHYALALRYIQTENDAP 289 (354) Q Consensus 246 ~r~~~re~~~~-~~~~~V~~A~vvitN------PTH~AVAL~Y~~~~~~aP 289 (354) +|.++.|+++- +.+.+|..|.|-++= |++=+|-|++.++....+ T Consensus 88 ~~ale~eL~~tI~~i~gV~~ArV~l~~P~~~~~~~tASV~l~~~~~~~l~~ 138 (171) T 1yj7_A 88 NYLKEQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVNLAP 138 (171) T ss_dssp HHHHHHHHHHHHTTSTTEEEEEEEEEC-------CEEEEEEEECTTCCCGG T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCHH T ss_conf 999999999999816570157999957988889851799997189987699 No 48 >2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Probab=27.46 E-value=24 Score=13.62 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.9 Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 4069989999997544899899999999999 Q gi|254780690|r 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251 (354) Q Consensus 221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~r 251 (354) .-++|.+++.+..++.-+||.+|.+-+++++ T Consensus 136 ~~~~t~~~l~~ai~~ll~d~~y~~~a~~l~~ 166 (170) T 2o6l_A 136 FNTMSSTDLLNALKRVINDPSYKENVMKLSR 166 (170) T ss_dssp TTTCCHHHHHHHHHHHHHCHHHHHHHHHHC- T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 0578999999999999789999999999999 No 49 >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Probab=27.45 E-value=24 Score=13.62 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=10.7 Q ss_pred CCCHHHHHHHHHHHHCCCCEE Q ss_conf 765899999999997399788 Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIF 315 (354) Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpiv 315 (354) +....|+.|++.+...++|+| T Consensus 453 sa~K~ArfI~~lcd~~~LPLv 473 (758) T 3k8x_A 453 SAFKTAQAINDFNNGEQLPMM 473 (758) T ss_dssp HHHHHHHHHHHHHHTSCCCEE T ss_pred HHHHHHHHHHHHHHHCCCCEE T ss_conf 899999999999861288669 No 50 >3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis} Probab=27.39 E-value=7.2 Score=17.72 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=29.1 Q ss_pred HCCCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCC Q ss_conf 077686998735---53078889768888888899807658999999999973997886---88999999972889 Q gi|254780690|r 261 ATSRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPI 330 (354) Q Consensus 261 ~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~i 330 (354) +-.++|-+|-|| ||+++|| ++--+..++|++| +.+-+|.=|++.-+ T Consensus 70 ~~~~~dgiIiNPga~ThtS~al------------------------~DAl~~~~~p~iEVHlSNi~~RE~fR~~S~ 121 (153) T 3lwz_A 70 ARGNTDFILINPAAFTHTSVAL------------------------RDALLGVQIPFIEIHLSNVHAREPFRHHSY 121 (153) T ss_dssp HTTTCSEEEEECGGGGGTCHHH------------------------HHHHHHHTCCEEEEESSCGGGSCGGGGCCS T ss_pred HHCCCCEEEECCCCCEEEHHHH------------------------HHHHHHCCCCEEEEEECCCCCCCCCCCCCC T ss_conf 7465766997476403203779------------------------999984599989999548412466454553 No 51 >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* Probab=26.96 E-value=23 Score=13.69 Aligned_cols=116 Identities=9% Similarity=0.104 Sum_probs=54.9 Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE------CCCCEEEEEEECCCCCCCCEEEEE Q ss_conf 40699899999975448998999999999999999889860776869987------355307888976888888889980 Q gi|254780690|r 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT------NPTHYALALRYIQTENDAPVLVAK 294 (354) Q Consensus 221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvit------NPTH~AVAL~Y~~~~~~aP~vvaK 294 (354) +.|||--.---=..|.+-=++...+||+......+ .+.+.+. +... ++.|+.-.+..+ + T Consensus 228 n~r~~ei~Aaigl~qL~~l~~~~~~R~~~~~~y~~--~L~~~~~--i~~~~~~~~~~~~~~~~~i~~~-----------~ 292 (375) T 2fnu_A 228 NFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDR--IFKDNPY--FTPLHPLLKDKSSNHLYPILMH-----------Q 292 (375) T ss_dssp BCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHTTCSS--EEESGGGCSSCCCCSCEEEEEC-----------G T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCC--CCCCCCCCCCCCCCEEEEEEEE-----------C T ss_conf 00242477899999997647999999999999998--7402887--1346654333444415899993-----------2 Q ss_pred CCCHHHHHHHHHHHHCCCCEE-------EC-----------HHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 765899999999997399788-------68-----------8999999972---889894898999999999999973 Q gi|254780690|r 295 GQNLIAKKMRKIAYEHNIPIF-------EE-----------PSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYH 351 (354) Q Consensus 295 G~~~~A~~Ir~~A~~~~Vpiv-------e~-----------~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~ 351 (354) -....-..+.+.-+++||+.- .. -|-|..++.+ .+++..+..+--+-|++.+..+++ T Consensus 293 ~~~~~r~~l~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~p~ae~l~~~~l~LP~~~~lt~~di~~I~~~i~k~~~ 370 (375) T 2fnu_A 293 KFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE 370 (375) T ss_dssp GGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 310578999999998799852346661118988841766899899999849598978999899999999999999999 No 52 >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Probab=26.70 E-value=24 Score=13.52 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=34.1 Q ss_pred CCCEEEECCCCEEEEEEECCCCCCCCEEEEEC------CCHHHHHHHHHHHHCCCCEEECHHHHHHHHH Q ss_conf 68699873553078889768888888899807------6589999999999739978868899999997 Q gi|254780690|r 264 RATIIITNPTHYALALRYIQTENDAPVLVAKG------QNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 (354) Q Consensus 264 ~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG------~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~ 326 (354) +.++||.-+-|. +.++.--.++ .+.+..++|.+|++++|||+----|-|.-.. T Consensus 310 ~~~~vviDyl~~----------~~~~~~~~~~~~~~~~i~~i~~~Lk~lA~~~~i~vi~~sqlnr~~~~ 368 (444) T 2q6t_A 310 QVGLIIIDYLQL----------MSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA 368 (444) T ss_dssp CCCEEEEECGGG----------CBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS T ss_pred CCCEEEEEEHHH----------HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC T ss_conf 678599962454----------21455677642099999999999999999739879998514821022 No 53 >2gd7_A Hexim1 protein, HMBA-inducible; transcription regulation, transcription elongation, positive transcription elongation factor-B; NMR {Homo sapiens} Probab=26.57 E-value=18 Score=14.51 Aligned_cols=19 Identities=37% Similarity=0.204 Sum_probs=14.5 Q ss_pred HHHHCCCHHHHHHHHHHCC Q ss_conf 9840699899999975448 Q gi|254780690|r 219 YSKLKMSKQEIKDEIKQSY 237 (354) Q Consensus 219 ~k~lkMskqEvK~E~K~~E 237 (354) .+=.-|||+|.-+||=+-| T Consensus 25 ErL~~mSK~ELIqEYL~LE 43 (107) T 2gd7_A 25 ESLQNMSKQELIKEYLELE 43 (107) T ss_dssp HHHHHSCHHHHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHHHHH T ss_conf 9997446899999999999 No 54 >2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8 Probab=26.09 E-value=25 Score=13.44 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=49.7 Q ss_pred CCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHC----------CCCC- Q ss_conf 68699873553078889768888888899807658999999999973997886889999999728----------8989- Q gi|254780690|r 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV----------PINS- 332 (354) Q Consensus 264 ~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~----------~ig~- 332 (354) .+++|+..|+...- .++.+ +. ...-.+.....+|++|++++||+|.--..-+.+|... .-|. T Consensus 269 ga~vvlvtp~~~~~--~~~~~----~~-~~~~~~~y~~~~~~vA~~~~v~~IDl~~~~~~~~~~lg~~~~~~~~~~~D~~ 341 (375) T 2o14_A 269 GADVILSTPQGRAT--DFTSE----GI-HSSVNRWYRASILALAEEEKTYLIDLNVLSSAYFTSIGPERTLGLYMDGDTL 341 (375) T ss_dssp TCEEEEECCCCCTT--CBCTT----SC-BCCTTSTTHHHHHHHHHHTTCEEECHHHHHHHHHHHHCHHHHHTTBCTTCSS T ss_pred CCEEEEEECCCCCC--CCCCC----CC-CHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCHHHCCCCCCC T ss_conf 99599993776676--66665----55-3367999999999999981987983789999999970810111100799998 Q ss_pred CCCHHHHHHHHHHHHHHH Q ss_conf 489899999999999997 Q gi|254780690|r 333 AIPPVFYKAVAQLIYKIY 350 (354) Q Consensus 333 ~Ip~~~y~aVA~il~~v~ 350 (354) --.+.=|+.+|+.++.-. T Consensus 342 Hpn~~G~~~iA~~v~~~L 359 (375) T 2o14_A 342 HPNRAGADALARLAVQEL 359 (375) T ss_dssp SBBHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 979999999999999998 No 55 >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Probab=25.01 E-value=26 Score=13.30 Aligned_cols=162 Identities=11% Similarity=0.160 Sum_probs=73.2 Q ss_pred CCCCCCCCCHH-HHHHH--CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 37791016934-30332--0126679999999999999999999-99983215689784089799999999999999999 Q gi|254780690|r 123 VKPSFKRVSLR-EGIKR--IYSINNLVNFMKSFVKIILVGTIIT-ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 (354) Q Consensus 123 l~pk~~rlNPi-~GlKr--iFS~k~lvel~KsllKv~li~~v~~-~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~ 198 (354) +...|+.||=+ .|+.+ +.-.-+--..+||.+-. -+++ .......+.+.....++......-+.... T Consensus 186 i~tg~~~ld~~~~G~~~g~l~vi~a~pg~GKT~~~~----~~a~~~~~~~g~~Vl~~SlEm~~~~~~~R~~a~~------ 255 (454) T 2r6a_A 186 IPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFAL----NIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAE------ 255 (454) T ss_dssp BCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHH----HHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHH------ T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHH----HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH------ T ss_conf 777927899884588888779999567765329999----8997576625980799807899999999999987------ Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH------H------CCCCH---HHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999976679999999840699899999975------4------48998---99999999999999988986077 Q gi|254780690|r 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK------Q------SYGNP---IIKNRQKSIARSRIRHKMMEATS 263 (354) Q Consensus 199 ~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K------~------~EGdP---~iK~~~r~~~re~~~~~~~~~V~ 263 (354) .+..+.+ .++-+++.+|.+.-.+ + ..+++ +++++.|.. .+ -. T Consensus 256 ----------~~v~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~i~~~~r~~----~~------~~ 312 (454) T 2r6a_A 256 ----------GNINAQN---LRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRL----KQ------ES 312 (454) T ss_dssp ----------HTCCHHH---HHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHH----HT------TT T ss_pred ----------HCCCHHH---HCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH----HH------HC T ss_conf ----------3356776---3469998789999999999876366067336676468999999999----98------54 Q ss_pred CCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHH Q ss_conf 686998735530788897688888888998076589999999999739978868899999 Q gi|254780690|r 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323 (354) Q Consensus 264 ~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~ 323 (354) +.++||..+-+...+ ++...... ....+.++.++|.+|++++|||+----|-|. T Consensus 313 g~~~vviDyl~~~~~----~~~~~~~~--~~~i~~i~~~Lk~lA~~~~v~vi~~sqlnr~ 366 (454) T 2r6a_A 313 GLGMIVIDYLQLIQG----SGRSKENR--QQEVSEISRSLKALARELEVPVIALSQLSRS 366 (454) T ss_dssp CCCEEEEECGGGSCC----SCC----C--HHHHHHHHHHHHHHHHHHTCCEEEEECCCTT T ss_pred CCCEEEEEEHHHCCC----CCCCCCCH--HHHHHHHHHHHHHHHHHHCCEEEEEECCCHH T ss_conf 996899974442046----78888669--9999999999999999979859998156811 No 56 >1gqo_A Dehydroquinase, dhqase; dehydratase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1 Probab=24.70 E-value=6.7 Score=17.97 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=28.3 Q ss_pred HCCCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCC Q ss_conf 077686998735---53078889768888888899807658999999999973997886---8899999997288 Q gi|254780690|r 261 ATSRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVP 329 (354) Q Consensus 261 ~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~ 329 (354) +-.++|-+|-|| ||+++||+ +--...++|++| +.+-||.-|++.- T Consensus 63 ~~~~~dgiIiNpga~thtS~al~------------------------Dal~~~~~p~iEVHlSNi~~RE~fR~~S 113 (143) T 1gqo_A 63 AEEQYSGIVLNPGALSHYSYAIR------------------------DAVSSISLPVVEVHLSNLYAREEFRHQS 113 (143) T ss_dssp HTTTCSEEEEECGGGGGTCHHHH------------------------HHHHTSCSCEEEEESSCGGGSCGGGGCC T ss_pred HCCCCEEEEECCCHHHEEEEEHH------------------------HHHHHCCCCEEEEEECCCCCCCCCCCCC T ss_conf 35576058856601501001199------------------------9998459998999956710046755555 No 57 >1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A Probab=24.56 E-value=27 Score=13.24 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 999999766799999998406998999999754 Q gi|254780690|r 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 (354) Q Consensus 203 ~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~ 235 (354) ++..++.......-.|.+++..-|+|+++..|. T Consensus 199 ~lG~ai~a~l~~~~~f~~~l~~ak~e~~~~~~~ 231 (231) T 1d2t_A 199 VVGSAVVATLHTNPAFQQQLQKAKAEFAQHQKK 231 (231) T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTC- T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999965999999999999999999709 No 58 >2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus} Probab=24.56 E-value=6.1 Score=18.31 Aligned_cols=47 Identities=28% Similarity=0.443 Sum_probs=31.4 Q ss_pred CCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCCCCC Q ss_conf 7686998735---53078889768888888899807658999999999973997886---88999999972889894 Q gi|254780690|r 263 SRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPINSA 333 (354) Q Consensus 263 ~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~ig~~ 333 (354) .+.|-+|-|| ||+++||+ +-=...++|+|| +.+-||.-|+..-+-.+ T Consensus 65 ~~~dgiIiNPga~ThtS~al~------------------------DAl~~~~~P~iEVHlSNi~~RE~fR~~S~is~ 117 (149) T 2uyg_A 65 EGFLAIVLNPGALTHYSYALL------------------------DAIRAQPLPVVEVHLTNLHAREEFRRHSVTAP 117 (149) T ss_dssp TTCSEEEEECGGGGGTCHHHH------------------------HHHHTSCSCEEEEESSCGGGSCGGGGCCSSGG T ss_pred CCCEEEEECCCHHHHHHHHHH------------------------HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC T ss_conf 562179975522320101499------------------------99983599989998058644565566565576 No 59 >1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A* Probab=24.50 E-value=4.7 Score=19.18 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=14.2 Q ss_pred CCCCEEEECC---CCEEEEEE Q ss_conf 7686998735---53078889 Q gi|254780690|r 263 SRATIIITNP---THYALALR 280 (354) Q Consensus 263 ~~A~vvitNP---TH~AVAL~ 280 (354) .++|-+|-|| ||+++||+ T Consensus 71 ~~~~giIiNpga~THtS~al~ 91 (156) T 1gtz_A 71 LNHCGIVINPAAYSHTSVAIL 91 (156) T ss_dssp HHCSEEEEECTTHHHHCHHHH T ss_pred CCCCEEEECCHHHHHHHHHHH T ss_conf 257359974503422458899 No 60 >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 Probab=24.40 E-value=24 Score=13.61 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=20.3 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEECHH Q ss_conf 899807658999999999973997886889 Q gi|254780690|r 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 (354) Q Consensus 290 ~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~ 319 (354) +|+++|... ...+.+.|++++||++..+. T Consensus 87 iI~t~~~~~-p~~l~~~a~~~~ipll~s~~ 115 (312) T 1knx_A 87 IILTKSFTD-PTVLLQVNQTYQVPILKTDF 115 (312) T ss_dssp EEEETTTCC-CHHHHHHGGGTCCCEEEESS T ss_pred EEEECCCCC-CHHHHHHHHHCCCEEEECCC T ss_conf 999894999-99999999983943998487 No 61 >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Probab=24.14 E-value=27 Score=13.18 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=16.8 Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 9343033201266799999999999 Q gi|254780690|r 131 SLREGIKRIYSINNLVNFMKSFVKI 155 (354) Q Consensus 131 NPi~GlKriFS~k~lvel~KsllKv 155 (354) ||-+=-...+|.+.+-+++.-.-+- T Consensus 171 ~P~NPTG~~~s~~~~~~l~~~~~~~ 195 (388) T 1j32_A 171 TPSNPTGMVYTPDEVRAIAQVAVEA 195 (388) T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 9989987348899999999630027 No 62 >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Probab=23.85 E-value=27 Score=13.14 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=72.6 Q ss_pred HHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 30332--0126679999999999999999999999832156897840897999999999999999999999999999766 Q gi|254780690|r 134 EGIKR--IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 (354) Q Consensus 134 ~GlKr--iFS~k~lvel~KsllKv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~ 211 (354) .|+.+ +.=+-+--..+||.+-. -++.-+.....+.+.....++......-+..... .. T Consensus 63 gG~~~G~l~vi~g~pg~GKT~~~l----~l~~~~~~~g~~vl~~SlEm~~~~l~~R~~~~~~----------------~v 122 (315) T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFAL----KQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAG----------------SI 122 (315) T ss_dssp SSBCTTCEEEEECCTTSSHHHHHH----HHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHT----------------TC T ss_pred CCCCCCCEEEEEECCCCCHHHHHH----HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH----------------CC T ss_conf 697888089999579999999999----9999874169829998476888789999999984----------------85 Q ss_pred HHHHHHHHHHHCCCHHHH---HHH---HHHC------CC---CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEE Q ss_conf 799999998406998999---999---7544------89---98999999999999999889860776869987355307 Q gi|254780690|r 212 GWSYHQWYSKLKMSKQEI---KDE---IKQS------YG---NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276 (354) Q Consensus 212 ~~qr~~~~k~lkMskqEv---K~E---~K~~------EG---dP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~A 276 (354) .+.+.+.. ...++.+|. .+- .++. .. ...++.+.++..+ ..-.+.++|+..+-+.. T Consensus 123 ~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~viviD~l~~~ 193 (315) T 3bh0_A 123 NAQKIKAA-RRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKR--------KNPGKRVIVMIDYLQLL 193 (315) T ss_dssp CHHHHHSC-HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHH--------TSSSCCEEEEEECGGGS T ss_pred CHHHHHCC-CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH--------HHCCCCCHHHHHHHHHH T ss_conf 45544213-4313488999999999876418747854877534899999999888--------63477521057798750 Q ss_pred EEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHH Q ss_conf 8889768888888899807658999999999973997886889999999 Q gi|254780690|r 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 (354) Q Consensus 277 VAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly 325 (354) ..-....+ . -.-.+++..+++.+|++++|||+---.|-|.-. T Consensus 194 ~~~~~~~~-----~--~~~i~~i~~~Lk~lA~~~~i~ii~lsQlnr~~~ 235 (315) T 3bh0_A 194 EPAKANDS-----R--TNQISQISRDLKKMARELDVVVIALSQLSRQVE 235 (315) T ss_dssp BCSCTTSC-----H--HHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGT T ss_pred CCCCCCCC-----H--HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 36777878-----9--999999999999999973997899975363201 No 63 >2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2c4v_A* 1j2y_A* 2wks_A* 2xb9_A* Probab=23.83 E-value=6.2 Score=18.23 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=15.0 Q ss_pred CCCCEEEECC---CCEEEEEE Q ss_conf 7686998735---53078889 Q gi|254780690|r 263 SRATIIITNP---THYALALR 280 (354) Q Consensus 263 ~~A~vvitNP---TH~AVAL~ 280 (354) .++|-+|-|| ||+++||+ T Consensus 77 ~~~dgiIiNPga~ThtS~al~ 97 (176) T 2c4w_A 77 SEYEGIIINPGAFSHTSIAIA 97 (176) T ss_dssp SSCCEEEEECGGGGGTCHHHH T ss_pred CCCCEEEECCCCCEEHHHHHH T ss_conf 893289975763133006799 No 64 >2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens} Probab=23.04 E-value=20 Score=14.21 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=39.9 Q ss_pred HHHHHCCCHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHH--H-HHHHCCCCCEEEECCCCEEEEEEECCC Q ss_conf 998406998999999754-------489989999999999999998--8-986077686998735530788897688 Q gi|254780690|r 218 WYSKLKMSKQEIKDEIKQ-------SYGNPIIKNRQKSIARSRIRH--K-MMEATSRATIIITNPTHYALALRYIQT 284 (354) Q Consensus 218 ~~k~lkMskqEvK~E~K~-------~EGdP~iK~~~r~~~re~~~~--~-~~~~V~~A~vvitNPTH~AVAL~Y~~~ 284 (354) |..+-++|+.++++|..| -+|+++|=..+|....-+-.+ . .-.=+..|.+++.|+. ....||.- T Consensus 27 W~s~~p~T~~qL~~~R~EFWDTap~~~Gr~EIW~ALraA~ea~~~~D~~tAQ~IldaAgItvp~gd---L~~cYDe~ 100 (137) T 2ksn_A 27 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGA---LTECYDEL 100 (137) T ss_dssp SSCSSCCSHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSCBCSSCC---SSEEEETT T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCCC---HHHHHHCC T ss_conf 578997279999999998872586348879999999999998751899999999986397636750---89998766 No 65 >2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A Probab=22.66 E-value=29 Score=12.97 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=21.4 Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 999999972889894898999999999999 Q gi|254780690|r 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 (354) Q Consensus 319 ~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~ 348 (354) -||-++|. ..--++=|+++|++||.+++. T Consensus 87 rla~siyg-~p~q~p~peefi~av~~v~~e 115 (139) T 2r18_A 87 RAATSIYG-APGQAEPPQAFIDEVAKVYEI 115 (139) T ss_dssp HHHHHHHC-CGGGCCCCHHHHHHHHHHHHH T ss_pred HHHHHHCC-CCCCCCCCHHHHHHHHHHHHH T ss_conf 99875238-855699888999999999999 No 66 >2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2 Probab=22.44 E-value=29 Score=12.94 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=26.0 Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEECH----HHHHHHHH Q ss_conf 8889980765899999999997399788688----99999997 Q gi|254780690|r 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEP----SLARSLFK 326 (354) Q Consensus 288 aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~----~LAR~Ly~ 326 (354) +.-++--|--.....|.+.|++.||||+..+ .-|+.+++ T Consensus 75 ~a~lIlTg~~~p~~~vl~la~~~gipvi~t~~dT~~ta~~i~~ 117 (139) T 2ioj_A 75 VRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTLTAVSRLES 117 (139) T ss_dssp EEEEEEETTCCCCHHHHHHHHHHTCCEEECSSCHHHHHHHHHT T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHH T ss_conf 6399993999978999999987699489947879999999999 No 67 >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Probab=22.42 E-value=21 Score=13.98 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=6.7 Q ss_pred HHCCCHHHCCCCC Q ss_conf 1013712137791 Q gi|254780690|r 115 IPVLNLNHVKPSF 127 (354) Q Consensus 115 G~~fs~k~l~pk~ 127 (354) -.+|.=||+.++. T Consensus 90 khV~~EKP~a~~~ 102 (345) T 3f4l_A 90 KNVLVEKPFTPTL 102 (345) T ss_dssp CEEEECSSSCSSH T ss_pred CEEEECCCCHHHH T ss_conf 9098434310125 No 68 >1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A Probab=21.76 E-value=30 Score=12.85 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=39.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999766799999998406998999999754489989999999999999998898 Q gi|254780690|r 206 LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM 259 (354) Q Consensus 206 ia~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~ 259 (354) --++||.=+||+.....-.|-+|+=||-++.+=.|..|.. ++.|...++.. T Consensus 14 aKIV~~MK~RHq~g~~hPLtLeEiLDEtn~~Di~~~~k~W---L~~EAL~nNPK 64 (81) T 1d8j_A 14 AKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQW---LMTEALVNNPK 64 (81) T ss_dssp HHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHH---HHTTHHHHCTT T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHH---HHHHHHCCCCC T ss_conf 9999999988715898874599999888634535789999---98704036995 No 69 >3glc_A Aldolase LSRF; TIM barrel, cytoplasm, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli k-12} PDB: 3gnd_A* 3gkf_O Probab=21.73 E-value=30 Score=12.84 Aligned_cols=93 Identities=22% Similarity=0.237 Sum_probs=54.1 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECC---CHHHHHHHHHHHHC Q ss_conf 544899899999999999999988986077686998735530788897688888888998076---58999999999973 Q gi|254780690|r 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ---NLIAKKMRKIAYEH 310 (354) Q Consensus 234 K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~---~~~A~~Ir~~A~~~ 310 (354) ++.+.||+.=+.--++..| -.||+|.|+||.= ..+......+.|+|++-|. |.-.++.-+.|-+. T Consensus 182 ~~~~~d~~~ia~aaR~a~E----------lGADiVK~~y~~~--~~~~v~~a~~vPvv~~GG~~~~d~~~l~~~~~Ai~a 249 (295) T 3glc_A 182 KDMVRDQRYFSLATRIAAE----------MGAQIIKTYYVEK--GFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQ 249 (295) T ss_dssp ---CCSHHHHHHHHHHHHH----------TTCSEEEEECCTT--THHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHHHHH----------HCCCEEECCCCCC--CHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHC T ss_conf 6565347999999999999----------5899546048852--377752158864687689875578999999999987 Q ss_pred CCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 997886889999999728898948989999999999 Q gi|254780690|r 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 (354) Q Consensus 311 ~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il 346 (354) |--=+- .-|.+|.. +=|....+|+.+|+ T Consensus 250 Ga~Gvv---iGRnI~Q~-----~dP~~~~~ai~~iV 277 (295) T 3glc_A 250 GASGVD---MGRNIFQS-----DHPVAMMKAVQAVV 277 (295) T ss_dssp TCSEEE---ESHHHHTS-----SSHHHHHHHHHHHH T ss_pred CCCEEE---ECCCCCCC-----CCHHHHHHHHHHHH T ss_conf 990999---68530058-----89999999999998 No 70 >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* Probab=21.59 E-value=23 Score=13.79 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=34.9 Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE-----EEECCCCEEEEEEECCCCCCCCEEEEEC Q ss_conf 40699899999975448998999999999999999889860776869-----9873553078889768888888899807 Q gi|254780690|r 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKG 295 (354) Q Consensus 221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~v-----vitNPTH~AVAL~Y~~~~~~aP~vvaKG 295 (354) +.|||--.--==..+.+-=++.-.+||++..-..+ .+++.+.-.. -.++.+|+..-+.. +. . T Consensus 234 n~rms~l~Aai~~~qL~~l~~~~~~R~~~~~~y~~--~L~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~----------~ 300 (388) T 1b9h_A 234 NMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSR--LLGAIDGVVPQGGDVRADRNSHYMAMFRI-PG----------L 300 (388) T ss_dssp BCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHHTSTTCEECCCCTTCCBCCCSEEEEEC-TT----------C T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCCEEEEEEEE-EC----------C T ss_conf 66641577999999999999999999999999999--71379983146657565510001000232-01----------2 Q ss_pred CCHHHHHHHHHHHHCCCCEE Q ss_conf 65899999999997399788 Q gi|254780690|r 296 QNLIAKKMRKIAYEHNIPIF 315 (354) Q Consensus 296 ~~~~A~~Ir~~A~~~~Vpiv 315 (354) ...--..+.+.-+++||+.- T Consensus 301 ~~~~R~~l~~~L~~~gI~~~ 320 (388) T 1b9h_A 301 TEERRNALVDRLVEAGLPAF 320 (388) T ss_dssp CHHHHHHHHHHHHHTTCCEE T ss_pred CHHHHHHHHHHHHHCCCCEE T ss_conf 24689999999998799875 No 71 >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Probab=21.48 E-value=30 Score=12.80 Aligned_cols=32 Identities=9% Similarity=0.244 Sum_probs=22.1 Q ss_pred HHCCCCCCCCCHHHHHHHCCCHHH---HHHHHHHHH Q ss_conf 213779101693430332012667---999999999 Q gi|254780690|r 121 NHVKPSFKRVSLREGIKRIYSINN---LVNFMKSFV 153 (354) Q Consensus 121 k~l~pk~~rlNPi~GlKriFS~k~---lvel~Ksll 153 (354) +.+ -|++.+||-.=..|++++-- |+|-+.... T Consensus 276 E~~-~dle~F~p~~~~~rilGmGDi~~L~ek~~~~~ 310 (443) T 3dm5_A 276 EKI-DDIEPFDPPRFVSRLLGLGDIQGLLEKFKELE 310 (443) T ss_dssp SST-TCEEECCHHHHHHHHTTTTCHHHHHHHHHHHH T ss_pred CCC-CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 884-24552699999999828973799999999987 No 72 >3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans} Probab=21.39 E-value=30 Score=12.79 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=29.5 Q ss_pred CCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCC Q ss_conf 686998735---53078889768888888899807658999999999973997886---88999999972889 Q gi|254780690|r 264 RATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPI 330 (354) Q Consensus 264 ~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~i 330 (354) ..+.+|.|| ||+++ .||+--+..++|+|| +.+-||.-|++.-+ T Consensus 83 ~~~gIIiNpga~THtSi------------------------ai~DAL~~~~~P~iEVHlSNi~~RE~fR~~Sv 131 (167) T 3kip_A 83 GVGFVVINAGAYTHTSV------------------------GIRDALLGTAIPFIEVHITNVHQREPFRHQSY 131 (167) T ss_dssp TCCEEEEECGGGGGTCH------------------------HHHHHHHHTTCCEEEEESSCGGGSCGGGGCCS T ss_pred CCEEEEECCCHHEEEHH------------------------HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC T ss_conf 82489835410112011------------------------16989985499889998178522465554641 No 73 >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Probab=20.88 E-value=31 Score=12.71 Aligned_cols=39 Identities=26% Similarity=0.507 Sum_probs=28.0 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHH-HHHHH Q ss_conf 8888899807658999999999973997886889-99999 Q gi|254780690|r 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS-LARSL 324 (354) Q Consensus 286 ~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~-LAR~L 324 (354) ..-|++++-=-+....+.|+.-+++|||+.++|. -+|++ T Consensus 402 ~~kPvv~~~~g~~~~~~~~~~l~~~Gip~f~~pe~a~~Al 441 (457) T 2csu_A 402 NEKPVLAMFMAGYVSEKAKELLEKNGIPTYERPEDVASAA 441 (457) T ss_dssp CCCCEEEEEECTTTTHHHHHHHHTTTCCEESSHHHHHHHH T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH T ss_conf 9997899978976609999999868998679999999999 No 74 >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain closure; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 1tpl_A 2tpl_A* 1c7g_A* Probab=20.71 E-value=31 Score=12.69 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=27.0 Q ss_pred HHHHHHCCCCEEECHHHHHHHHHHCCCCCC-----------C-----CHHHHHHHHHHHHHHHHHC Q ss_conf 999997399788688999999972889894-----------8-----9899999999999997302 Q gi|254780690|r 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSA-----------I-----PPVFYKAVAQLIYKIYHKK 353 (354) Q Consensus 304 r~~A~~~~Vpive~~~LAR~Ly~~~~ig~~-----------I-----p~~~y~aVA~il~~v~~lk 353 (354) .++..+.||-..+.-.++ .......|+. + -.+.-.-|++.|..+|+.+ T Consensus 368 ~~l~~~~GIr~~~~g~~~--~~~~~~~g~~~~~~~e~vRlalpr~~~T~eeiDyV~e~l~~v~~~~ 431 (456) T 2ez2_A 368 ASIYVETGVRSMERGIIS--AGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456) T ss_dssp HHHHHHHSEECEEESHHH--HCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG T ss_pred HHHHHHHCCCEECCCCCC--CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999996092110356433--5767666776777546179866887789999999999999999606 No 75 >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Probab=20.64 E-value=31 Score=12.68 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=33.1 Q ss_pred CCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHH Q ss_conf 768699873553078889768888888899807658999999999973997886889999 Q gi|254780690|r 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR 322 (354) Q Consensus 263 ~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR 322 (354) .+.++||.-|-+.-..- .+. .- -....++++.+++++|++++|||+----+-| T Consensus 146 ~~~~~ivID~l~~l~~~---~~~-~~---~~~~~~~~~~~Lk~la~~~~v~vi~~~q~~r 198 (296) T 1cr0_A 146 LGCDVIILDHISIVVSA---SGE-SD---ERKMIDNLMTKLKGFAKSTGVVLVVICHLKN 198 (296) T ss_dssp TCCSEEEEEEEC------------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC- T ss_pred CCCCEEEEECCCEECCC---CCC-CC---HHHHHHHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 68858999443000268---876-40---4788999999999999973882899960472 No 76 >2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis} Probab=20.61 E-value=31 Score=12.67 Aligned_cols=35 Identities=3% Similarity=-0.010 Sum_probs=20.5 Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 99998406998999999754489989999999999 Q gi|254780690|r 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250 (354) Q Consensus 216 ~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~ 250 (354) -++.++.|=+.+|+++|.++.+.+-+++..++... T Consensus 34 Gk~i~~fk~~~~e~~~~~~~~~~~~e~~~~~~~~~ 68 (78) T 2l16_A 34 GRTLLEFKSATKSLVSGDEKEEKSAELTAVKQDKN 68 (78) T ss_dssp HHHHHHHHHHHHHHHHCCC---------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999998999998877655778887698 No 77 >2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} Probab=20.45 E-value=20 Score=14.20 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999766799999998406 Q gi|254780690|r 197 IMILLFIATLTVLDIGWSYHQWYSKLK 223 (354) Q Consensus 197 ~~~~~~~~via~iD~~~qr~~~~k~lk 223 (354) ..+++.+++++++-|..=+--|.|+.| T Consensus 17 vsv~~GlLlL~ll~~~LwK~GFFKR~r 43 (54) T 2knc_A 17 VGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 999999999999999999827312679 No 78 >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Probab=20.34 E-value=16 Score=14.92 Aligned_cols=15 Identities=7% Similarity=0.104 Sum_probs=6.6 Q ss_pred HHHHHHHHHCCCCEE Q ss_conf 999999997399788 Q gi|254780690|r 301 KKMRKIAYEHNIPIF 315 (354) Q Consensus 301 ~~Ir~~A~~~~Vpiv 315 (354) .++++.|++++.+++ T Consensus 102 ~~l~~~a~~~~~~i~ 116 (253) T 1j5p_A 102 ERFFSELKNSPARVF 116 (253) T ss_dssp HHHHHHHHTCSCEEE T ss_pred HHHHHHHHHCCCEEE T ss_conf 999999997299399 No 79 >1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1 Probab=20.29 E-value=4 Score=19.70 Aligned_cols=69 Identities=26% Similarity=0.331 Sum_probs=43.1 Q ss_pred HCCCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCCCCCC Q ss_conf 077686998735---53078889768888888899807658999999999973997886---889999999728898948 Q gi|254780690|r 261 ATSRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPINSAI 334 (354) Q Consensus 261 ~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~ig~~I 334 (354) +..++|-+|-|| ||+++||+ +--...++|++| +.+-+|.-|++.-+=.++ T Consensus 64 ~~~~~dgiIiNpga~ThtS~al~------------------------DAl~~~~~P~iEVHlSNi~~RE~fR~~S~is~~ 119 (154) T 1uqr_A 64 AFQNTDFIIINPGAFTHTSVAIR------------------------DALLAVSIPFIEVHLSNVHAREPFRHHSYLSDV 119 (154) T ss_dssp TTTTCCEEEEECTTHHHHCHHHH------------------------HHHHHHTCCEEEEESSCGGGSCGGGSCCSSGGG T ss_pred HHCCCCEEEECCCCCEEEHHHHH------------------------HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC T ss_conf 75367789972763031037899------------------------999854998899982584224654545545610 Q ss_pred ---------CHHHHHHHHHHHHHHHHHC Q ss_conf ---------9899999999999997302 Q gi|254780690|r 335 ---------PPVFYKAVAQLIYKIYHKK 353 (354) Q Consensus 335 ---------p~~~y~aVA~il~~v~~lk 353 (354) +..+..|+-.++..+.+.+ T Consensus 120 ~~g~i~G~G~~~Y~lAl~~l~~~l~k~~ 147 (154) T 1uqr_A 120 AKGVICGLGAKGYDYALDFAISELQKIQ 147 (154) T ss_dssp SSEEEESSTTHHHHHHHHHHHHHHHTC- T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHH T ss_conf 2189953887999999999999998765 No 80 >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Probab=20.24 E-value=22 Score=13.90 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=11.8 Q ss_pred CCCHHHHHHHHHHCC-CCCHHHH Q ss_conf 658787999998578-7513359 Q gi|254780690|r 13 APSSKKIEDALNEGN-APISREA 34 (354) Q Consensus 13 ~PT~kRL~dARekGq-V~kS~el 34 (354) +|++.|+++..++-. .+...++ T Consensus 38 d~~~~~~~~~a~~~~~~~~~~~~ 60 (359) T 3m2t_A 38 DSDLERARRVHRFISDIPVLDNV 60 (359) T ss_dssp CSSHHHHGGGGGTSCSCCEESSH T ss_pred CCCHHHHHHHHHHCCCCCEECCH T ss_conf 89999999999884998531899 Done!