Query         gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 354
No_of_seqs    156 out of 1618
Neff          7.0 
Searched_HMMs 23785
Date          Tue May 31 17:24:30 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780690.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2jlj_A YSCU, YOP proteins tran 100.0       0       0  410.5  12.1  135  219-353     1-135 (144)
  2 3bzs_A ESCU; auto cleavage pro 100.0       0       0  403.7  10.2  134  220-353     3-136 (137)
  3 2jli_A YSCU, YOP proteins tran 100.0 5.4E-43       0  359.2  11.1  122  228-349     1-122 (123)
  4 3c01_E Surface presentation of  99.9 4.1E-26 1.7E-30  225.5  11.0   82  272-353     1-82  (98)
  5 3bzy_B ESCU; auto cleavage pro  99.9 5.5E-26 2.3E-30  224.5  10.1   82  272-353     1-82  (83)
  6 2vt1_B Surface presentation of  99.9 4.3E-26 1.8E-30  225.3   9.3   82  272-353     1-82  (93)
  7 3bzy_A ESCU; auto cleavage pro  99.7 9.5E-17   4E-21  151.4   6.6   52  220-271     3-54  (54)
  8 3c01_A Surface presentation of  99.6 7.6E-16 3.2E-20  144.2   6.6   48  224-271     1-48  (48)
  9 2vt1_A Surface presentation of  99.6   6E-17 2.5E-21  153.0  -1.5   51  221-271     2-52  (52)
 10 1wo8_A Methylglyoxal synthase;  77.1     1.8 7.6E-05   22.5   3.4   68  233-332    54-124 (126)
 11 2yvq_A Carbamoyl-phosphate syn  76.4     3.1 0.00013   20.6   4.4   48  263-328    95-142 (143)
 12 1b93_A Protein (methylglyoxal   74.9     2.8 0.00012   21.0   3.8   35  295-329    97-131 (152)
 13 2oar_A Large-conductance mecha  72.2     2.8 0.00012   20.9   3.4   22  147-168    94-115 (174)
 14 1m62_A BAG-family molecular ch  66.1       4 0.00017   19.7   3.1   33  224-256    46-78  (87)
 15 1uk5_A BAG-family molecular ch  65.9     4.1 0.00017   19.7   3.1   33  224-256    65-97  (111)
 16 1ugo_A BCL2-associated athanog  64.9     4.4 0.00018   19.4   3.1   31  226-256    55-85  (99)
 17 1m7k_A Silencer of death domai  61.9     5.3 0.00022   18.7   3.1   33  224-256    59-91  (99)
 18 1vmd_A MGS, methylglyoxal synt  61.0       7  0.0003   17.8   3.6   66  234-329    82-147 (178)
 19 3a8y_C BAG family molecular ch  58.6     8.4 0.00035   17.2   3.8   33  224-256    69-101 (142)
 20 3g0t_A Putative aminotransfera  51.4      11 0.00045   16.4   4.1   24  131-154   190-213 (437)
 21 3dci_A Arylesterase; SGNH_hydr  46.9      12 0.00052   15.9   3.5   98  246-351   129-227 (232)
 22 3frk_A QDTB; aminotransferase,  46.7     7.8 0.00033   17.5   1.9   45  302-346   294-361 (373)
 23 2c81_A Glutamine-2-deoxy-scyll  45.8     8.4 0.00035   17.2   1.9   84  221-311   247-335 (418)
 24 2gv9_A DNA polymerase; polymer  45.7      13 0.00054   15.7   3.7   30  271-300  1006-1042(1193)
 25 3dr4_A Putative perosamine syn  42.1      11 0.00047   16.2   2.1   59  289-347   309-387 (391)
 26 3bb8_A CDP-4-keto-6-deoxy-D-gl  41.5     9.7 0.00041   16.7   1.7   35  318-352   398-435 (437)
 27 1ydw_A AX110P-like protein; st  40.2     9.5  0.0004   16.8   1.5   18   13-30     38-55  (362)
 28 3nyt_A Aminotransferase WBPE;   37.6      14  0.0006   15.4   2.0   47  302-348   293-359 (367)
 29 2po3_A 4-dehydrase; external a  36.5      14  0.0006   15.4   1.9   48  302-349   314-382 (424)
 30 2oga_A Transaminase; PLP-depen  36.4      12 0.00049   16.1   1.4   52  301-352   321-395 (399)
 31 1f6g_A Voltage-gated potassium  36.3      17 0.00073   14.7  11.2   58  196-253    97-155 (160)
 32 2dpl_A GMP synthetase, GMP syn  36.2      18 0.00074   14.7   5.9  106  238-346    95-213 (308)
 33 1mdo_A ARNB aminotransferase;   34.7      12 0.00049   16.1   1.2  123  221-352   241-385 (393)
 34 3b8x_A WBDK, pyridoxamine 5-ph  34.2      13 0.00054   15.7   1.4   48  299-346   317-389 (390)
 35 1r9d_A Glycerol dehydratase; r  33.4      16 0.00069   14.9   1.8   22  209-231   288-309 (787)
 36 1ko7_A HPR kinase/phosphatase;  33.3      17 0.00072   14.8   1.9   34  289-323    83-116 (314)
 37 2f3o_A PFLD, PFL2, pyruvate fo  32.5      14 0.00057   15.6   1.3   44  295-347   347-390 (776)
 38 1wkc_A HB8 TT1367 protein; str  31.9      20 0.00085   14.2   2.3   12  224-235     1-12  (184)
 39 1h05_A 3-dehydroquinate dehydr  31.7     2.3 9.9E-05   21.6  -2.7   19  263-281    67-88  (146)
 40 3if2_A Aminotransferase; YP_26  31.4      21 0.00086   14.1   4.8   25  131-155   214-238 (444)
 41 3lyu_A Putative hydrogenase; t  31.3      21 0.00087   14.1   3.0   28  291-318   111-138 (142)
 42 2x3l_A ORN/Lys/Arg decarboxyla  30.8      21 0.00089   14.0   4.0   22  291-312   296-317 (446)
 43 1xfi_A Unknown protein; struct  30.6      19 0.00079   14.4   1.7   62  264-334   282-359 (367)
 44 1o69_A Aminotransferase; struc  30.4      17 0.00071   14.8   1.5   54  297-350   311-384 (394)
 45 3bgw_A DNAB-like replicative h  29.7      22 0.00092   13.9   2.2   30  296-325   335-364 (444)
 46 3n8k_A 3-dehydroquinate dehydr  28.8     3.7 0.00015   20.0  -2.2   29  263-291    93-124 (172)
 47 1yj7_A ESCJ; mixed alpha/beta,  28.3      23 0.00097   13.7   2.3   44  246-289    88-138 (171)
 48 2o6l_A UDP-glucuronosyltransfe  27.5      24   0.001   13.6   1.9   31  221-251   136-166 (170)
 49 3k8x_A Acetyl-COA carboxylase;  27.5      24   0.001   13.6   4.9   21  295-315   453-473 (758)
 50 3lwz_A 3-dehydroquinate dehydr  27.4     7.2  0.0003   17.7  -0.9   46  261-330    70-121 (153)
 51 2fnu_A Aminotransferase; prote  27.0      23 0.00098   13.7   1.7  116  221-351   228-370 (375)
 52 2q6t_A DNAB replication FORK h  26.7      24   0.001   13.5   2.4   53  264-326   310-368 (444)
 53 2gd7_A Hexim1 protein, HMBA-in  26.6      18 0.00077   14.5   1.1   19  219-237    25-43  (107)
 54 2o14_A Hypothetical protein YX  26.1      25  0.0011   13.4   9.5   80  264-350   269-359 (375)
 55 2r6a_A DNAB helicase, replicat  25.0      26  0.0011   13.3   2.5  162  123-323   186-366 (454)
 56 1gqo_A Dehydroquinase, dhqase;  24.7     6.7 0.00028   18.0  -1.4   45  261-329    63-113 (143)
 57 1d2t_A Acid phosphatase; all a  24.6      27  0.0011   13.2   3.9   33  203-235   199-231 (231)
 58 2uyg_A 3-dehydroquinate dehydr  24.6     6.1 0.00025   18.3  -1.7   47  263-333    65-117 (149)
 59 1gtz_A 3-dehydroquinate dehydr  24.5     4.7  0.0002   19.2  -2.2   18  263-280    71-91  (156)
 60 1knx_A Probable HPR(Ser) kinas  24.4      24   0.001   13.6   1.4   29  290-319    87-115 (312)
 61 1j32_A Aspartate aminotransfer  24.1      27  0.0011   13.2   4.2   25  131-155   171-195 (388)
 62 3bh0_A DNAB-like replicative h  23.8      27  0.0011   13.1   2.2  156  134-325    63-235 (315)
 63 2c4w_A 3-dehydroquinate dehydr  23.8     6.2 0.00026   18.2  -1.7   18  263-280    77-97  (176)
 64 2ksn_A Ubiquitin domain-contai  23.0      20 0.00084   14.2   0.7   64  218-284    27-100 (137)
 65 2r18_A Capsid assembly protein  22.7      29  0.0012   13.0   3.3   29  319-348    87-115 (139)
 66 2ioj_A Hypothetical protein AF  22.4      29  0.0012   12.9   2.0   39  288-326    75-117 (139)
 67 3f4l_A Putative oxidoreductase  22.4      21  0.0009   14.0   0.8   13  115-127    90-102 (345)
 68 1d8j_A General transcription f  21.8      30  0.0012   12.8   4.6   51  206-259    14-64  (81)
 69 3glc_A Aldolase LSRF; TIM barr  21.7      30  0.0013   12.8   3.6   93  234-346   182-277 (295)
 70 1b9h_A AHBA synthase, protein   21.6      23 0.00095   13.8   0.8   82  221-315   234-320 (388)
 71 3dm5_A SRP54, signal recogniti  21.5      30  0.0013   12.8   2.3   32  121-153   276-310 (443)
 72 3kip_A 3-dehydroquinase, type   21.4      30  0.0013   12.8   3.2   43  264-330    83-131 (167)
 73 2csu_A 457AA long hypothetical  20.9      31  0.0013   12.7   3.2   39  286-324   402-441 (457)
 74 2ez2_A Beta-tyrosinase, tyrosi  20.7      31  0.0013   12.7   2.4   48  304-353   368-431 (456)
 75 1cr0_A DNA primase/helicase; R  20.6      31  0.0013   12.7   2.2   53  263-322   146-198 (296)
 76 2l16_A SEC-independent protein  20.6      31  0.0013   12.7   2.3   35  216-250    34-68  (78)
 77 2knc_A Integrin alpha-IIB; tra  20.4      20 0.00084   14.2   0.3   27  197-223    17-43  (54)
 78 1j5p_A Aspartate dehydrogenase  20.3      16 0.00068   14.9  -0.2   15  301-315   102-116 (253)
 79 1uqr_A 3-dehydroquinate dehydr  20.3       4 0.00017   19.7  -3.3   69  261-353    64-147 (154)
 80 3m2t_A Probable dehydrogenase;  20.2      22 0.00092   13.9   0.5   22   13-34     38-60  (359)

No 1  
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein transport, type III secretion system, plasmid; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=100.00  E-value=0  Score=410.50  Aligned_cols=135  Identities=29%  Similarity=0.455  Sum_probs=133.3

Q ss_pred             HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCH
Q ss_conf             98406998999999754489989999999999999998898607768699873553078889768888888899807658
Q gi|254780690|r  219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL  298 (354)
Q Consensus       219 ~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~  298 (354)
                      +|+||||||||||||||+||||+||++||++|||+++++++.+|++|||||||||||||||+||+++++||+|||||.|.
T Consensus         1 ik~lkMsk~EvK~E~K~~EGdP~iK~~rr~~~~e~~~~~~~~~v~~a~vvi~NPth~AVAL~Yd~~~~~aP~VvAkG~g~   80 (144)
T 2jlj_A            1 IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIGILYKRGETPLPLVTFKYTDA   80 (144)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHCCCCHHHHHHTCSEEEEETTTEEEEEECCTTTCSSCEEEEEEETH
T ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCEEECCCCCH
T ss_conf             94144888999999884539989999999999999985777405741389957871678988788999878820416829


Q ss_pred             HHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999739978868899999997288989489899999999999997302
Q gi|254780690|r  299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       299 ~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk  353 (354)
                      +|.+|+++|++|||||+|||+|||+||.++++|++||+++|++||+||+|||+++
T Consensus        81 ~A~~I~~~A~e~gIPi~e~~~LAr~Ly~~~~vg~~IP~ely~aVA~ILa~v~~l~  135 (144)
T 2jlj_A           81 QVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN  135 (144)
T ss_dssp             HHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999859978848999999997488999369999999999999999987


No 2  
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cyclization, membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=100.00  E-value=0  Score=403.71  Aligned_cols=134  Identities=31%  Similarity=0.476  Sum_probs=131.2

Q ss_pred             HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHH
Q ss_conf             84069989999997544899899999999999999988986077686998735530788897688888888998076589
Q gi|254780690|r  220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI  299 (354)
Q Consensus       220 k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~  299 (354)
                      +.+|||||||||||||+||||+||++||++|||+++++++++|++|||||||||||||||+||+++++||+|||||.|.+
T Consensus         3 h~~~Msk~EvK~E~K~~EGdP~iK~~rr~~~~e~~~~~~~~~v~~A~vvi~NPth~AVAL~Yd~~~~~aP~VvAKG~g~~   82 (137)
T 3bzs_A            3 HMASMSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKLGETPLPLVIETGKDAK   82 (137)
T ss_dssp             -------------------------------------CHHHHHHHCSEEEEETTTEEEEEECCTTTCSSCEEEEEEETHH
T ss_pred             CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHH
T ss_conf             55657989999998835399899999999999999846762235241787388616899898889999999999508499


Q ss_pred             HHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999739978868899999997288989489899999999999997302
Q gi|254780690|r  300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       300 A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~lk  353 (354)
                      |++|+++|++|||||+||++|||+||+++++|++||+++|++||+||+|||+|.
T Consensus        83 A~~I~~~A~e~gVPi~e~~~LAr~Ly~~~~~g~~IP~ely~aVAeILa~v~~Ld  136 (137)
T 3bzs_A           83 ALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLD  136 (137)
T ss_dssp             HHHHHHHHHHHTCCEEECHHHHHHHHHHSCTTCBCCGGGHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             999999999849958878999999997588989379999999999999998425


No 3  
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=100.00  E-value=5.4e-43  Score=359.22  Aligned_cols=122  Identities=30%  Similarity=0.483  Sum_probs=121.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf             99999754489989999999999999998898607768699873553078889768888888899807658999999999
Q gi|254780690|r  228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA  307 (354)
Q Consensus       228 EvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A  307 (354)
                      ||||||||+||||+||++||++|||+++++|+.+|++|||||||||||||||+||+++++||+|+|||.|.+|++|+++|
T Consensus         1 EvK~E~Ke~EGdP~iK~~rr~~~~e~~~~~~~~~v~~A~vvi~NPth~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A   80 (123)
T 2jli_A            1 EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA   80 (123)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHTCSEEEECCCSEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHH
T ss_pred             CCHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCHHEEEEEECCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf             90256553659989999999999999864123057745189848723058878578999999997636819999999999


Q ss_pred             HHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             973997886889999999728898948989999999999999
Q gi|254780690|r  308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI  349 (354)
Q Consensus       308 ~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v  349 (354)
                      ++|||||++||+|||+||.++++|++||+++|++||+||+||
T Consensus        81 ~~~gIPi~~d~~LAr~Ly~~~~~g~~IP~ely~aVA~IL~~v  122 (123)
T 2jli_A           81 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWL  122 (123)
T ss_dssp             HHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHHHHC--
T ss_pred             HHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             985998897899999999748898906999999999999841


No 4  
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=99.93  E-value=4.1e-26  Score=225.55  Aligned_cols=82  Identities=22%  Similarity=0.259  Sum_probs=80.9

Q ss_pred             CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             55307888976888888889980765899999999997399788688999999972889894898999999999999973
Q gi|254780690|r  272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH  351 (354)
Q Consensus       272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~  351 (354)
                      ||||||||+||+++++||+|+|||.|.+|++||++|+++||||++|++|||+||+++++|++||+++|++||+||+|+|+
T Consensus         1 PTH~AVAL~Y~~~~~~aP~VvAkG~g~~A~~I~~~A~~~gIPi~~~~~LAr~L~~~~~ig~~IP~ely~aVA~IL~~v~~   80 (98)
T 3c01_E            1 PTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWLEE   80 (98)
T ss_dssp             CCCEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             96699998846899989998775172999999999999599887099999999973889994899999999999999999


Q ss_pred             HC
Q ss_conf             02
Q gi|254780690|r  352 KK  353 (354)
Q Consensus       352 lk  353 (354)
                      ++
T Consensus        81 l~   82 (98)
T 3c01_E           81 VE   82 (98)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             87


No 5  
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=99.93  E-value=5.5e-26  Score=224.52  Aligned_cols=82  Identities=34%  Similarity=0.463  Sum_probs=80.8

Q ss_pred             CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             55307888976888888889980765899999999997399788688999999972889894898999999999999973
Q gi|254780690|r  272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH  351 (354)
Q Consensus       272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~  351 (354)
                      ||||||||+||+++++||+|+|||.|++|++||++|+++||||+||++|||+||+++++|++||+++|++||+||+|+|+
T Consensus         1 PTH~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A~~~gVPi~~d~~LAr~L~~~~~~g~~IP~ely~aVA~il~~v~~   80 (83)
T 3bzy_B            1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKGQYITEDFFEPVAQLIRIAID   80 (83)
T ss_dssp             CCCEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCTTCBCCGGGHHHHHHHHHHHCC
T ss_pred             CCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             97799999866899989999997187899999999998499788299999999866879892799999999999999986


Q ss_pred             HC
Q ss_conf             02
Q gi|254780690|r  352 KK  353 (354)
Q Consensus       352 lk  353 (354)
                      +.
T Consensus        81 ld   82 (83)
T 3bzy_B           81 LD   82 (83)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             15


No 6  
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=99.93  E-value=4.3e-26  Score=225.33  Aligned_cols=82  Identities=28%  Similarity=0.312  Sum_probs=81.1

Q ss_pred             CCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             55307888976888888889980765899999999997399788688999999972889894898999999999999973
Q gi|254780690|r  272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH  351 (354)
Q Consensus       272 PTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~v~~  351 (354)
                      ||||||||+||+++++||+|+|||+|.+|++||++|+++||||++|++|||+||.++++|++||+++|++||+||+|||+
T Consensus         1 PTH~AVAL~Y~~~~~~aP~VvAkG~g~~A~~I~~~A~~~gIPiv~~~~LAr~L~~~~~~g~~IP~ely~aVA~IL~~v~~   80 (93)
T 2vt1_B            1 PTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ   80 (93)
T ss_dssp             CCSEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCSSEECCTTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             96699999857899989999985185999999999998599888499999999974889881789999999999999999


Q ss_pred             HC
Q ss_conf             02
Q gi|254780690|r  352 KK  353 (354)
Q Consensus       352 lk  353 (354)
                      ++
T Consensus        81 l~   82 (93)
T 2vt1_B           81 VE   82 (93)
T ss_dssp             C-
T ss_pred             HH
T ss_conf             87


No 7  
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=99.66  E-value=9.5e-17  Score=151.39  Aligned_cols=52  Identities=29%  Similarity=0.445  Sum_probs=50.4

Q ss_pred             HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             8406998999999754489989999999999999998898607768699873
Q gi|254780690|r  220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN  271 (354)
Q Consensus       220 k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN  271 (354)
                      +.+|||||||||||||+||||+||++||++|||+++++|+.+||+|||||||
T Consensus         3 h~~~MskqEvKdE~Ke~EGdP~vK~~rR~~~~e~~~~~~~~~V~~AdvVitN   54 (54)
T 3bzy_A            3 HMASMSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKN   54 (54)
T ss_pred             CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             4465799999999986529999999999999999997998507889987309


No 8  
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, membrane, inner membrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=99.61  E-value=7.6e-16  Score=144.23  Aligned_cols=48  Identities=25%  Similarity=0.525  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             998999999754489989999999999999998898607768699873
Q gi|254780690|r  224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN  271 (354)
Q Consensus       224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN  271 (354)
                      ||||||||||||+||||+||++||++|||+++++|+.+||+|||||||
T Consensus         1 Msk~EvK~E~Ke~EGdP~vK~~rr~~~~el~~~~~~~~V~~AdvVvtN   48 (48)
T 3c01_A            1 MDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVAN   48 (48)
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             988999999986419999999999999999996898407889976209


No 9  
>2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=99.58  E-value=6e-17  Score=152.96  Aligned_cols=51  Identities=22%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             406998999999754489989999999999999998898607768699873
Q gi|254780690|r  221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN  271 (354)
Q Consensus       221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitN  271 (354)
                      +||||||||||||||+||||+||++||++|||+++++++++||+|||||||
T Consensus         2 dLkMskqEvK~E~K~~EGdP~vK~~rr~~~~el~~~~~~~~V~~AdvVitN   52 (52)
T 2vt1_A            2 DMMMDKQEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMN   52 (52)
T ss_dssp             ------------------------------CCCSCHHHHHHHHTCSEEEEC
T ss_pred             CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             887788999999886529999999999999999996898508889987209


No 10 
>1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} SCOP: c.24.1.2
Probab=77.10  E-value=1.8  Score=22.49  Aligned_cols=68  Identities=15%  Similarity=0.247  Sum_probs=46.5

Q ss_pred             HHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE--ECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             754489-9899999999999999988986077686998--7355307888976888888889980765899999999997
Q gi|254780690|r  233 IKQSYG-NPIIKNRQKSIARSRIRHKMMEATSRATIII--TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE  309 (354)
Q Consensus       233 ~K~~EG-dP~iK~~~r~~~re~~~~~~~~~V~~A~vvi--tNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~  309 (354)
                      +|-.|| ||+|-..+++-              +=|.||  .||++                  .++...-...||+.|-+
T Consensus        54 ~k~~~gg~p~i~d~I~~g--------------~I~lVIn~~~~~~------------------~~~~~~D~~~IRR~a~~  101 (126)
T 1wo8_A           54 LSGPLGGDLQIGARVAEG--------------KVLAVVFLQDPLT------------------AKPHEPDVQALMRVCNV  101 (126)
T ss_dssp             CCTTTTHHHHHHHHHHTT--------------CEEEEEEECCTTS------------------CCTTHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCHHHHHHCC--------------CCCEEEEECCCCC------------------CCCCCHHHHHHHHHHHH
T ss_conf             745889998999999859--------------9778998069888------------------86450008999999997


Q ss_pred             CCCCEEECHHHHHHHHHHCCCCC
Q ss_conf             39978868899999997288989
Q gi|254780690|r  310 HNIPIFEEPSLARSLFKQVPINS  332 (354)
Q Consensus       310 ~~Vpive~~~LAR~Ly~~~~ig~  332 (354)
                      |+||.+-|...|+++-...+-|.
T Consensus       102 ~~IP~~T~~~~A~a~v~al~~g~  124 (126)
T 1wo8_A          102 HGVPLATNLVAAEALIAWIRKGT  124 (126)
T ss_dssp             TTCCEECSHHHHHHHHHHHHHTC
T ss_pred             CCCCEEECHHHHHHHHHHHHHCC
T ss_conf             39988978999999999998269


No 11 
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=76.42  E-value=3.1  Score=20.58  Aligned_cols=48  Identities=15%  Similarity=0.233  Sum_probs=35.1

Q ss_pred             CCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHC
Q ss_conf             768699873553078889768888888899807658999999999973997886889999999728
Q gi|254780690|r  263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV  328 (354)
Q Consensus       263 ~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~  328 (354)
                      .+-|.||.=|++-                  ...-.-...||+.|-+++||++-|...|+++-...
T Consensus        95 g~i~lVINtp~~~------------------~~~~~dg~~IRR~Av~~~Ip~~T~i~~A~~~v~al  142 (143)
T 2yvq_A           95 GSIDLVINLPNNN------------------TKFVHDNYVIRRTAVDSGIPLLTNFQVTKLFAEAV  142 (143)
T ss_dssp             TSCCEEEECCCCC------------------GGGHHHHHHHHHHHHHTTCCEECSHHHHHHHHHTC
T ss_pred             CCEEEEEECCCCC------------------CCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHH
T ss_conf             9759999867899------------------76566579999999975999886899999999985


No 12 
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=74.86  E-value=2.8  Score=21.00  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCC
Q ss_conf             76589999999999739978868899999997288
Q gi|254780690|r  295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP  329 (354)
Q Consensus       295 G~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~  329 (354)
                      +...-...||+.|-+|+||.+-|...|+++-....
T Consensus        97 ~~~~D~~~IRR~av~~~IP~~T~~~tA~a~i~ai~  131 (152)
T 1b93_A           97 PHDPDVKALLRLATVWNIPVATNVATADFIIQSPH  131 (152)
T ss_dssp             TTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHH
T ss_conf             45320899999999819736756999999999798


No 13 
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=72.18  E-value=2.8  Score=20.91  Aligned_cols=22  Identities=5%  Similarity=0.170  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999983
Q gi|254780690|r  147 NFMKSFVKIILVGTIITISLTE  168 (354)
Q Consensus       147 el~KsllKv~li~~v~~~~i~~  168 (354)
                      .|+.+++-++++++++|+++..
T Consensus        94 ~Fl~aiInFlIiA~vvyFlivk  115 (174)
T 2oar_A           94 VLLSAAINFFLIAFAVYFLVVL  115 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999


No 14 
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=66.14  E-value=4  Score=19.74  Aligned_cols=33  Identities=9%  Similarity=0.108  Sum_probs=23.8

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998999999754489989999999999999998
Q gi|254780690|r  224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH  256 (354)
Q Consensus       224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~  256 (354)
                      ++++=+|=.-=+++|||.||.+||+.-+++..-
T Consensus        46 L~~~llkLD~Ie~~G~~~vR~~Rk~~v~~vq~~   78 (87)
T 1m62_A           46 LTKELLELDSVETGGQDSVRQARKEAVCKIQAI   78 (87)
T ss_dssp             HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999868956699899999999999999999


No 15 
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=65.87  E-value=4.1  Score=19.67  Aligned_cols=33  Identities=9%  Similarity=0.110  Sum_probs=24.0

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998999999754489989999999999999998
Q gi|254780690|r  224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH  256 (354)
Q Consensus       224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~  256 (354)
                      ++++=+|=.-=|++|||.||.+||+.-+++..-
T Consensus        65 L~~~LlkLD~Id~~G~~~vR~~RK~~v~~vQ~~   97 (111)
T 1uk5_A           65 LTKELLALDSVDPEGRADVRQARRDGVRKVQTI   97 (111)
T ss_dssp             HHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999867846689799999999999999999


No 16 
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=64.93  E-value=4.4  Score=19.44  Aligned_cols=31  Identities=23%  Similarity=0.171  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             8999999754489989999999999999998
Q gi|254780690|r  226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRH  256 (354)
Q Consensus       226 kqEvK~E~K~~EGdP~iK~~~r~~~re~~~~  256 (354)
                      ++=+|=.-=+++|||.+|.+||+.-+++..-
T Consensus        55 ~~llkLD~I~~~G~~~vR~~RK~~v~~vQ~~   85 (99)
T 1ugo_A           55 KQLFEIDSVDTEGKGDIQQARKRAAQETERL   85 (99)
T ss_dssp             HHHHHHHHSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999857826689799999999999999999


No 17 
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=61.95  E-value=5.3  Score=18.75  Aligned_cols=33  Identities=9%  Similarity=0.108  Sum_probs=24.3

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998999999754489989999999999999998
Q gi|254780690|r  224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH  256 (354)
Q Consensus       224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~  256 (354)
                      .+++=+|=.-=+++|||.||.+||+.-+++..-
T Consensus        59 L~~~LlkLD~Ie~~G~~~vR~~RK~~v~~vq~~   91 (99)
T 1m7k_A           59 LTKELLELDSVETGGQDSVRQARKEAVCKIQAI   91 (99)
T ss_dssp             HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999968956699799999999999999999


No 18 
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=61.01  E-value=7  Score=17.80  Aligned_cols=66  Identities=20%  Similarity=0.128  Sum_probs=44.2

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf             54489989999999999999998898607768699873553078889768888888899807658999999999973997
Q gi|254780690|r  234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP  313 (354)
Q Consensus       234 K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vp  313 (354)
                      +..+|||+|=..++.              .+=|.||-=|.         +...       +....-...||+.|-+++||
T Consensus        82 ~~~gg~p~I~d~I~~--------------geI~lVINt~d---------~~~~-------~~~~~D~~~IRR~av~~~IP  131 (178)
T 1vmd_A           82 GPLGGDQQIGAMIAE--------------GKIDVLIFFWD---------PLEP-------QAHDVDVKALIRIATVYNIP  131 (178)
T ss_dssp             GGGTHHHHHHHHHHT--------------TSCCEEEEECC---------SSSC-------CTTSCCHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHC--------------CCCCEEEECCC---------CCCC-------CCCHHHHHHHHHHHHHHCCC
T ss_conf             378888529999986--------------98218998169---------9777-------76602699999999984972


Q ss_pred             EEECHHHHHHHHHHCC
Q ss_conf             8868899999997288
Q gi|254780690|r  314 IFEEPSLARSLFKQVP  329 (354)
Q Consensus       314 ive~~~LAR~Ly~~~~  329 (354)
                      ++-|..-|+++-....
T Consensus       132 ~~Ttl~tA~a~i~ai~  147 (178)
T 1vmd_A          132 VAITRSTADFLISSPL  147 (178)
T ss_dssp             EESSHHHHHHHHHSGG
T ss_pred             EEECHHHHHHHHHHHH
T ss_conf             3546999999999897


No 19 
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=58.55  E-value=8.4  Score=17.20  Aligned_cols=33  Identities=18%  Similarity=0.145  Sum_probs=25.7

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998999999754489989999999999999998
Q gi|254780690|r  224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH  256 (354)
Q Consensus       224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~  256 (354)
                      ++++=+|=.-=+++|||.+|.+||+.-+++.+-
T Consensus        69 L~k~LLkLD~Ie~~G~~~vR~~RK~~Vk~VQ~~  101 (142)
T 3a8y_C           69 LTKQLLALDAVDPQGEEKCKAARKQAVRLAQNI  101 (142)
T ss_dssp             HHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999848847789699999999999999999


No 20 
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis W83}
Probab=51.39  E-value=11  Score=16.36  Aligned_cols=24  Identities=8%  Similarity=-0.129  Sum_probs=12.6

Q ss_pred             CHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             934303320126679999999999
Q gi|254780690|r  131 SLREGIKRIYSINNLVNFMKSFVK  154 (354)
Q Consensus       131 NPi~GlKriFS~k~lvel~KsllK  154 (354)
                      ||-+=-.+.+|...+-+++.-.-+
T Consensus       190 ~P~NPTG~~~s~e~~~~i~~~a~~  213 (437)
T 3g0t_A          190 NPNNPTWQCMTDEELRIIGELATK  213 (437)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             998998775312689999887525


No 21 
>3dci_A Arylesterase; SGNH_hydrolase subfamily, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=46.87  E-value=12  Score=15.86  Aligned_cols=98  Identities=13%  Similarity=0.087  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf             99999999998898607768699873553078889768888888899807658999999999973997886889999999
Q gi|254780690|r  246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF  325 (354)
Q Consensus       246 ~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly  325 (354)
                      .+++...+.........+.+.+++..|+.+.    ..+.....-.-...-....+..+++.|++.++|.+.--.    ..
T Consensus       129 ~~~l~~~~~~~~~~~~~~~~~ill~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~----~~  200 (232)
T 3dci_A          129 MRRLAQIVETFIYKPREAVPKLLIVAPPPCV----AGPGGEPAGGRDIEQSMRLAPLYRKLAAELGHHFFDAGS----VA  200 (232)
T ss_dssp             HHHHHHHHHHCCCSSTTCCCEEEEEECCCCC----CCTTSSCGGGCCHHHHTTHHHHHHHHHHHHTCEEEEGGG----TC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEECCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCHH----CC
T ss_conf             9999999998300220142110351278756----664322000158999999999999999870986974500----04


Q ss_pred             HHCCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf             7288989-4898999999999999973
Q gi|254780690|r  326 KQVPINS-AIPPVFYKAVAQLIYKIYH  351 (354)
Q Consensus       326 ~~~~ig~-~Ip~~~y~aVA~il~~v~~  351 (354)
                      .....|. --.++=|+.+|+.++-..+
T Consensus       201 ~~~~~DgvHpn~~G~~~iA~~i~~~I~  227 (232)
T 3dci_A          201 SASPVDGVHLDASATAAIGRALAAPVR  227 (232)
T ss_dssp             CCCTTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             489976769699999999999999999


No 22 
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=46.69  E-value=7.8  Score=17.47  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=24.7

Q ss_pred             HHHHHHHHCCCCEEEC--------------------HHHHHHHHHHC---CCCCCCCHHHHHHHHHHH
Q ss_conf             9999999739978868--------------------89999999728---898948989999999999
Q gi|254780690|r  302 KMRKIAYEHNIPIFEE--------------------PSLARSLFKQV---PINSAIPPVFYKAVAQLI  346 (354)
Q Consensus       302 ~Ir~~A~~~~Vpive~--------------------~~LAR~Ly~~~---~ig~~Ip~~~y~aVA~il  346 (354)
                      ++.+.-+++||++-..                    =|-|..+++++   ++...+..+--+-|+++|
T Consensus       294 ~l~~~L~~~gI~~~~~y~~plh~~~~~~~~~~~~~~~pnae~l~~~~l~LP~~~~Lt~~di~~I~~~i  361 (373)
T 3frk_A          294 ELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKI  361 (373)
T ss_dssp             HHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHH
T ss_conf             99999997799747427974001988885699889998999998397978899998999999999999


No 23 
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=45.77  E-value=8.4  Score=17.21  Aligned_cols=84  Identities=8%  Similarity=0.014  Sum_probs=37.6

Q ss_pred             HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE-----EECCCCEEEEEEECCCCCCCCEEEEEC
Q ss_conf             406998999999754489989999999999999998898607768699-----873553078889768888888899807
Q gi|254780690|r  221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII-----ITNPTHYALALRYIQTENDAPVLVAKG  295 (354)
Q Consensus       221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vv-----itNPTH~AVAL~Y~~~~~~aP~vvaKG  295 (354)
                      +.|||-=.--==.-|.+.=++...+||++.+....  .+++.+.-.++     .+++.++.-.+++++.+..-.     -
T Consensus       247 n~rm~~~~Aaigl~qL~~l~~~~~~R~~~~~~y~~--~L~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~  319 (418)
T 2c81_A          247 NYCLSEFQSAILLDQLQELDDKNAIREKNAMFLND--ALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGL-----N  319 (418)
T ss_dssp             BCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTC-----C
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHCCCC-----C
T ss_conf             45542889999999998788999999999999999--8348999603677887775102799999812540678-----9


Q ss_pred             CCHHHHHHHHHHHHCC
Q ss_conf             6589999999999739
Q gi|254780690|r  296 QNLIAKKMRKIAYEHN  311 (354)
Q Consensus       296 ~~~~A~~Ir~~A~~~~  311 (354)
                      +|.+....++.....+
T Consensus       320 Rd~l~~~L~~~~~~~~  335 (418)
T 2c81_A          320 ADQFCEILREKLNMGT  335 (418)
T ss_dssp             HHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHCCCCCE
T ss_conf             9999999984779980


No 24 
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B*
Probab=45.74  E-value=13  Score=15.73  Aligned_cols=30  Identities=7%  Similarity=0.253  Sum_probs=18.1

Q ss_pred             CCCCEEEEEEECCC-------CCCCCEEEEECCCHHH
Q ss_conf             35530788897688-------8888889980765899
Q gi|254780690|r  271 NPTHYALALRYIQT-------ENDAPVLVAKGQNLIA  300 (354)
Q Consensus       271 NPTH~AVAL~Y~~~-------~~~aP~vvaKG~~~~A  300 (354)
                      |+.|.+||.|-...       .+..|.|+++|.+...
T Consensus      1006 ~~phv~vA~rl~~r~~~~p~~GdrI~YViv~~~~~~~ 1042 (1193)
T 2gv9_A         1006 RLAHLTVYYKLMARRAQVPSIKDRIPYVIVAQTREVE 1042 (1193)
T ss_dssp             -------------------CCTTTSCBEEBCC-----
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC
T ss_conf             8169999999985389999998999899997987766


No 25 
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=42.12  E-value=11  Score=16.22  Aligned_cols=59  Identities=12%  Similarity=0.036  Sum_probs=32.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEE-----------------CHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHH
Q ss_conf             8899807658999999999973997886-----------------889999999728---8989489899999999999
Q gi|254780690|r  289 PVLVAKGQNLIAKKMRKIAYEHNIPIFE-----------------EPSLARSLFKQV---PINSAIPPVFYKAVAQLIY  347 (354)
Q Consensus       289 P~vvaKG~~~~A~~Ir~~A~~~~Vpive-----------------~~~LAR~Ly~~~---~ig~~Ip~~~y~aVA~il~  347 (354)
                      |+.+.+....-..++.+.-+++||++-.                 +-|-|..++.+.   ++...+..+--+-|++.|.
T Consensus       309 ~i~~~~~~~~~rd~l~~~L~~~gI~~~~~~~plh~~~~y~~~~~~~~p~a~~l~~~~l~LP~~~~lt~~di~~Ii~~ik  387 (391)
T 3dr4_A          309 TVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALD  387 (391)
T ss_dssp             EEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHCHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             9997655603299999999977998676276544298877468899979999982979936999999999999999999


No 26 
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=41.46  E-value=9.7  Score=16.71  Aligned_cols=35  Identities=9%  Similarity=0.097  Sum_probs=27.7

Q ss_pred             HHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             8999999972---8898948989999999999999730
Q gi|254780690|r  318 PSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYHK  352 (354)
Q Consensus       318 ~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~l  352 (354)
                      =|-|..++.+   .++......+.-+-|++.+..+|++
T Consensus       398 ~pna~~i~~~~l~LP~~~~Lt~~di~~Ii~~ik~f~~~  435 (437)
T 3bb8_A          398 LTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFGL  435 (437)
T ss_dssp             CHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             98999998294986489999999999999999999671


No 27 
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=40.19  E-value=9.5  Score=16.78  Aligned_cols=18  Identities=22%  Similarity=0.163  Sum_probs=9.7

Q ss_pred             CCCHHHHHHHHHHCCCCC
Q ss_conf             658787999998578751
Q gi|254780690|r   13 APSSKKIEDALNEGNAPI   30 (354)
Q Consensus        13 ~PT~kRL~dARekGqV~k   30 (354)
                      .+++.|.++..++=.++.
T Consensus        38 d~~~~~~~~~a~~~~~~~   55 (362)
T 1ydw_A           38 SRSLEKAKAFATANNYPE   55 (362)
T ss_dssp             CSSHHHHHHHHHHTTCCT
T ss_pred             CCCHHHHHHHHHHHCCCC
T ss_conf             799999999999849985


No 28 
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=37.60  E-value=14  Score=15.40  Aligned_cols=47  Identities=11%  Similarity=0.157  Sum_probs=28.3

Q ss_pred             HHHHHHHHCCCCEEE-----------------CHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHH
Q ss_conf             999999973997886-----------------889999999728---89894898999999999999
Q gi|254780690|r  302 KMRKIAYEHNIPIFE-----------------EPSLARSLFKQV---PINSAIPPVFYKAVAQLIYK  348 (354)
Q Consensus       302 ~Ir~~A~~~~Vpive-----------------~~~LAR~Ly~~~---~ig~~Ip~~~y~aVA~il~~  348 (354)
                      .+.+.-+++||++-.                 +=|-|+.+++++   ++...+..+-.+-|+++|.-
T Consensus       293 ~l~~~L~~~gI~~~~~y~~pl~~~~~~~~~~~~~pna~~i~~~~l~LP~~~~lt~~ei~~I~~~l~~  359 (367)
T 3nyt_A          293 SVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN  359 (367)
T ss_dssp             HHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCEEEECCCCHHHCHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             9999999879986740697334495640778999899999849797778899899999999999946


No 29 
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=36.47  E-value=14  Score=15.37  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=29.2

Q ss_pred             HHHHHHHHCCCCEEE------------------CHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             999999973997886------------------88999999972---8898948989999999999999
Q gi|254780690|r  302 KMRKIAYEHNIPIFE------------------EPSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKI  349 (354)
Q Consensus       302 ~Ir~~A~~~~Vpive------------------~~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v  349 (354)
                      ++.+.-+++||++-.                  +=|-|..++++   .++...+..+--+-|++++.-+
T Consensus       314 ~l~~~L~~~GI~~~~~y~p~lh~~~~~~~~~~~~~P~ae~l~~~~l~LP~~~~Lt~~di~~I~~~IK~~  382 (424)
T 2po3_A          314 LVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLC  382 (424)
T ss_dssp             HHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999987998750069740009776289989998999998497989899998999999999999999


No 30 
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=36.39  E-value=12  Score=16.10  Aligned_cols=52  Identities=15%  Similarity=0.162  Sum_probs=32.8

Q ss_pred             HHHHHHHHHCCCCEEEC--H------------------HHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999739978868--8------------------999999972---8898948989999999999999730
Q gi|254780690|r  301 KKMRKIAYEHNIPIFEE--P------------------SLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYHK  352 (354)
Q Consensus       301 ~~Ir~~A~~~~Vpive~--~------------------~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~l  352 (354)
                      .++.+.-+++||++-..  .                  |-|..++.+   .++...+..+--+-|++.|...+++
T Consensus       321 d~l~~~L~~~GI~t~~~y~~plh~~p~~~~~~~~~~~~pnae~i~~~~l~LP~~~~Lt~~di~~Ii~~Ik~f~~k  395 (399)
T 2oga_A          321 DELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAER  395 (399)
T ss_dssp             HHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCCEEEECCCCHHHCHHHHHCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999997799876536860443988773599889998999998497978689998999999999999999998


No 31 
>1f6g_A Voltage-gated potassium channel; integral membrane protein, cytoplasmic domains, proton transport, membrane protein; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=36.33  E-value=17  Score=14.68  Aligned_cols=58  Identities=14%  Similarity=0.005  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             999999999999976679-9999998406998999999754489989999999999999
Q gi|254780690|r  196 LIMILLFIATLTVLDIGW-SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR  253 (354)
Q Consensus       196 ~~~~~~~~~via~iD~~~-qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~  253 (354)
                      +..++++..+++.+.-.+ ++..-.++..+-..+...+....+.+-.++.+.++++++.
T Consensus        97 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~k~l  155 (160)
T 1f6g_A           97 VAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERML  155 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999999999999


No 32 
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A
Probab=36.17  E-value=18  Score=14.67  Aligned_cols=106  Identities=14%  Similarity=0.164  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCE------EEEEEECCCCCCCC-----EEEEECCCHHHHHHHHH
Q ss_conf             99899999999999999988986077686998735530------78889768888888-----89980765899999999
Q gi|254780690|r  238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY------ALALRYIQTENDAP-----VLVAKGQNLIAKKMRKI  306 (354)
Q Consensus       238 GdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~------AVAL~Y~~~~~~aP-----~vvaKG~~~~A~~Ir~~  306 (354)
                      -||+-|..+....+-......... -.++++.+. |++      ...+++..+....|     .++.=-.|.-=..+|++
T Consensus        95 ~~pe~k~~~~~~~~~~~l~~~A~~-~g~~~l~~G-t~~~D~~E~~~gikt~~~~Ggl~~~~~~~~iePL~~L~K~EVR~l  172 (308)
T 2dpl_A           95 TDPEEKRKIIGRVFIEVFEEVAKK-IGAEYLIQG-TIAPDWIESQGKIKSHHNVGGLPEKLNLKLIEPLRDLYKDEVREL  172 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH-HTCSEEECC-CCCC---------------------CCCEEECTTTTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH-CCCCEECCC-CCCCCHHHHCCCEEEEECCCCCCHHHCCCHHHHHHHHCHHHHHHH
T ss_conf             995897627608999999999998-399585134-020425541353267615788626535441237887456999999


Q ss_pred             HHHCCCC--EEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             9973997--886889999999728898948989999999999
Q gi|254780690|r  307 AYEHNIP--IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI  346 (354)
Q Consensus       307 A~~~~Vp--ive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il  346 (354)
                      |++.|+|  ++..+|-|----+ ..++.+|.+|--+.|-+.=
T Consensus       173 a~~LGlP~~i~~K~P~pgpgl~-i~~~~~it~e~l~~v~~a~  213 (308)
T 2dpl_A          173 AKFLGLPEKIYNRMPFPGPGLA-VRVIGEVTPEKIRIVREAN  213 (308)
T ss_dssp             HHHTTCCHHHHTCCCCCTTGGG-GGBSSSCCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH
T ss_conf             9980999899288999850124-5458633388887479999


No 33 
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=34.71  E-value=12  Score=16.09  Aligned_cols=123  Identities=11%  Similarity=0.047  Sum_probs=57.5

Q ss_pred             HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECC-CHH
Q ss_conf             4069989999997544899899999999999999988986077686998735530788897688888888998076-589
Q gi|254780690|r  221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ-NLI  299 (354)
Q Consensus       221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~-~~~  299 (354)
                      +.|||--.-.=-.-|.+.-+++..+||+........  ..+.+.  ..+..|.+-.     ...-..-|..+-+.. +.-
T Consensus       241 N~rmsel~Aaig~~qL~~l~~~~~~r~~~~~~~~~~--l~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  311 (393)
T 1mdo_A          241 KYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQA--MADLPF--QPLSLPSWEH-----IHAWHLFIIRVDEARCGIT  311 (393)
T ss_dssp             BCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--HHTSSC--EECCCCSSCE-----ECCCSCEEEECCHHHHSSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCC--CCCCCCCCCC-----CCCEEEEEEECCHHHCCCC
T ss_conf             656405778775100110379999999999999998--348998--6567631124-----3200332222243224134


Q ss_pred             HHHHHHHHHHCCCCEE-------ECH-----------HHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999997399788-------688-----------999999972---8898948989999999999999730
Q gi|254780690|r  300 AKKMRKIAYEHNIPIF-------EEP-----------SLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYHK  352 (354)
Q Consensus       300 A~~Ir~~A~~~~Vpiv-------e~~-----------~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~l  352 (354)
                      -.++.+.-+++||++-       ..|           |-|..++++   .++...+..+-.+-|+++|..+...
T Consensus       312 Rd~l~~~L~~~GI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~l~~v~~~  385 (393)
T 1mdo_A          312 RDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQ  385 (393)
T ss_dssp             HHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHCCCCEEEECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             99999999987998443685122289989528878998999998497987489999999999999999999966


No 34 
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=34.22  E-value=13  Score=15.73  Aligned_cols=48  Identities=15%  Similarity=-0.010  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHCCCCE---E-----E--------------CHHHHHHHHHH---CCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999999739978---8-----6--------------88999999972---8898948989999999999
Q gi|254780690|r  299 IAKKMRKIAYEHNIPI---F-----E--------------EPSLARSLFKQ---VPINSAIPPVFYKAVAQLI  346 (354)
Q Consensus       299 ~A~~Ir~~A~~~~Vpi---v-----e--------------~~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il  346 (354)
                      .-.++.+.-+++||..   .     .              +=|-|..++.+   .++...+..+--+-|++++
T Consensus       317 ~Rd~l~~~L~~~gI~tr~~~~~~~~~~~~~~~~~~~~~~~~~pnae~i~~~~l~LP~~~~lt~~ei~~I~~~i  389 (390)
T 3b8x_A          317 IRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             CHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCEEECCCCHHHCCHHHHHHCCCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHC
T ss_conf             3999999999779974642764211377888721877679998999998398988589978999999999861


No 35 
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=33.42  E-value=16  Score=14.90  Aligned_cols=22  Identities=5%  Similarity=-0.004  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             76679999999840699899999
Q gi|254780690|r  209 LDIGWSYHQWYSKLKMSKQEIKD  231 (354)
Q Consensus       209 iD~~~qr~~~~k~lkMskqEvK~  231 (354)
                      +|..+.-| |.++.++|++|.++
T Consensus       288 lDq~L~Py-ye~Dg~it~eeA~E  309 (787)
T 1r9d_A          288 FDQYMYPY-YENDKNITDKFAQE  309 (787)
T ss_dssp             HHHHHHHH-HHHCSSCCHHHHHH
T ss_pred             HHHHHHHH-HHHCCCCCHHHHHH
T ss_conf             89999999-98458989999999


No 36 
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=33.28  E-value=17  Score=14.76  Aligned_cols=34  Identities=15%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHH
Q ss_conf             88998076589999999999739978868899999
Q gi|254780690|r  289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS  323 (354)
Q Consensus       289 P~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~  323 (354)
                      =+|+++|.. ....+.+.|++++||++..+--.-.
T Consensus        83 ~iIvt~~~~-~~~~l~~~a~~~~ipll~t~~~t~~  116 (314)
T 1ko7_A           83 AIIVTRDLE-PPEELIEAAKEHETPLITSKIATTQ  116 (314)
T ss_dssp             CEEECTTCC-CCHHHHHHHHHTTCCEEECCSCHHH
T ss_pred             EEEEECCCC-CCHHHHHHHHHHCCEEEECCCCHHH
T ss_conf             899989999-9999999999839749983884899


No 37 
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl radical, hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus}
Probab=32.46  E-value=14  Score=15.56  Aligned_cols=44  Identities=25%  Similarity=0.383  Sum_probs=25.0

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             76589999999999739978868899999997288989489899999999999
Q gi|254780690|r  295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY  347 (354)
Q Consensus       295 G~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~  347 (354)
                      +.+++...|-+.+++.+.|   .|-|      ++.+.+-.|++++..+++.+.
T Consensus       347 a~N~ls~liLea~~~l~~~---~P~l------tvR~~~~~p~~fl~~a~e~i~  390 (776)
T 2f3o_A          347 ATNELTYLMLEVTDRLRLR---QPNV------HVRINKGSPESFLKRLAEAIS  390 (776)
T ss_dssp             CCCHHHHHHHHHHHHHCCS---CSEE------EEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCC---CCCE------EEEECCCCCHHHHHHHHHHHH
T ss_conf             6677889999999856999---9947------999889999999999999960


No 38 
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus HB8} SCOP: c.124.1.6
Probab=31.94  E-value=20  Score=14.17  Aligned_cols=12  Identities=25%  Similarity=0.548  Sum_probs=9.6

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             998999999754
Q gi|254780690|r  224 MSKQEIKDEIKQ  235 (354)
Q Consensus       224 MskqEvK~E~K~  235 (354)
                      |||+|++++.++
T Consensus         1 m~K~~lRk~~~~   12 (184)
T 1wkc_A            1 MTKAELRRRARA   12 (184)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
T ss_conf             988999999999


No 39 
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A
Probab=31.69  E-value=2.3  Score=21.58  Aligned_cols=19  Identities=42%  Similarity=0.480  Sum_probs=15.0

Q ss_pred             CCCCEEEECC---CCEEEEEEE
Q ss_conf             7686998735---530788897
Q gi|254780690|r  263 SRATIIITNP---THYALALRY  281 (354)
Q Consensus       263 ~~A~vvitNP---TH~AVAL~Y  281 (354)
                      .++|-+|.||   ||+++||+=
T Consensus        67 ~~~~giIiNpga~Th~S~al~D   88 (146)
T 1h05_A           67 DAAEPVILNAGGLTHTSVALRD   88 (146)
T ss_dssp             HHTCCEEEECGGGGGTCHHHHH
T ss_pred             CCCCEEEECCCHHEEEHHHHHH
T ss_conf             4686179635112120251899


No 40 
>3if2_A Aminotransferase; YP_265399.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=31.44  E-value=21  Score=14.11  Aligned_cols=25  Identities=0%  Similarity=0.011  Sum_probs=15.2

Q ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             9343033201266799999999999
Q gi|254780690|r  131 SLREGIKRIYSINNLVNFMKSFVKI  155 (354)
Q Consensus       131 NPi~GlKriFS~k~lvel~KsllKv  155 (354)
                      ||-+=-.+.+|...+-++++-.-|-
T Consensus       214 ~P~NPTG~~~s~~~l~~l~~~a~~~  238 (444)
T 3if2_A          214 RPTNPTGNVLTDEEMAHLAEIAKRY  238 (444)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             9949847558999999999988743


No 41 
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=31.35  E-value=21  Score=14.10  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=21.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEECH
Q ss_conf             9980765899999999997399788688
Q gi|254780690|r  291 LVAKGQNLIAKKMRKIAYEHNIPIFEEP  318 (354)
Q Consensus       291 vvaKG~~~~A~~Ir~~A~~~~Vpive~~  318 (354)
                      |.+=|-..+-..+.+.+++.|||++|..
T Consensus       111 iy~CGP~~M~~~v~~~l~~~GvP~~~~~  138 (142)
T 3lyu_A          111 VFMVGPVGDQKQVFEVVKEYGVPMLEHH  138 (142)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCCBC---
T ss_pred             EEEECCHHHHHHHHHHHHHCCCCEEECC
T ss_conf             9996999999999999998198988012


No 42 
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=30.77  E-value=21  Score=14.03  Aligned_cols=22  Identities=14%  Similarity=0.231  Sum_probs=11.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC
Q ss_conf             9980765899999999997399
Q gi|254780690|r  291 LVAKGQNLIAKKMRKIAYEHNI  312 (354)
Q Consensus       291 vvaKG~~~~A~~Ir~~A~~~~V  312 (354)
                      ++..+.+.-+..+.+.-++++|
T Consensus       296 i~i~~~g~~g~~~~~~L~~~gI  317 (446)
T 2x3l_A          296 LLIKYEGFTGHDIQNWFMNAHI  317 (446)
T ss_dssp             EEEECTTSCHHHHHHHHHHTTE
T ss_pred             EEECCCCCCHHHHHHHHHHCCE
T ss_conf             9965778748999999987896


No 43 
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=30.62  E-value=19  Score=14.41  Aligned_cols=62  Identities=15%  Similarity=0.239  Sum_probs=38.2

Q ss_pred             CCCEEEECCCCEEEEEEECCC-------CCCCCEEEEECCCHHHHHHHHHHHH----CC-----CCEEECHHHHHHHHHH
Q ss_conf             686998735530788897688-------8888889980765899999999997----39-----9788688999999972
Q gi|254780690|r  264 RATIIITNPTHYALALRYIQT-------ENDAPVLVAKGQNLIAKKMRKIAYE----HN-----IPIFEEPSLARSLFKQ  327 (354)
Q Consensus       264 ~A~vvitNPTH~AVAL~Y~~~-------~~~aP~vvaKG~~~~A~~Ir~~A~~----~~-----Vpive~~~LAR~Ly~~  327 (354)
                      ....||+|.+-. .++-+++-       -..|..|++||+|      |.+-.+    .+     .-+|-|+++|+.|  .
T Consensus       282 ~~~~Vv~sG~~~-pgl~L~r~s~e~~~~~~~ADLIIaKGMG------ra~~tN~~a~~~cd~l~L~~vKc~~vA~~l--G  352 (367)
T 1xfi_A          282 SKLLIANSGNDL-PVIDLSRVSQELAYLSSDADLVIVEGMG------RGIETNLYAQFKCDSLKIGMVKHLEVAEFL--G  352 (367)
T ss_dssp             TTEEEEECCCCS-SSCCTTSBCHHHHHHHTTCSEEEEESHH------HHTTBSTTCCCSSEEEEEEECCCHHHHHHH--T
T ss_pred             CCCEEECCCCCC-CCCCHHHCCHHHHHHHHCCCEEEECCCC------CHHHCCCHHHCCCCEEHHHHHCCHHHHHHH--C
T ss_conf             560893799998-8869476899999998449999984874------014212112317882223442689999994--9


Q ss_pred             CCCCCCC
Q ss_conf             8898948
Q gi|254780690|r  328 VPINSAI  334 (354)
Q Consensus       328 ~~ig~~I  334 (354)
                      +++|+-|
T Consensus       353 ~~~~d~V  359 (367)
T 1xfi_A          353 GRLYDCV  359 (367)
T ss_dssp             CCTTCEE
T ss_pred             CCCCCEE
T ss_conf             9611379


No 44 
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=30.44  E-value=17  Score=14.78  Aligned_cols=54  Identities=15%  Similarity=0.101  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHHHCCCCEE-----------------ECHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             5899999999997399788-----------------688999999972---88989489899999999999997
Q gi|254780690|r  297 NLIAKKMRKIAYEHNIPIF-----------------EEPSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIY  350 (354)
Q Consensus       297 ~~~A~~Ir~~A~~~~Vpiv-----------------e~~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~  350 (354)
                      ..--.++.+.-+++||++-                 .+.|-|..++++   .++...+..+--+-|++++..+.
T Consensus       311 ~~~~~~l~~~L~~~gI~~~~~~~~lh~~~~~~~~~~~~~pnae~l~~~~i~LP~~~~lt~~di~~I~~~i~~~l  384 (394)
T 1o69_A          311 HPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSI  384 (394)
T ss_dssp             CHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCEEEECCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             10299999999977998786086423196550688789989999983979897999889999999999999999


No 45 
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=29.69  E-value=22  Score=13.90  Aligned_cols=30  Identities=20%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             CCHHHHHHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf             658999999999973997886889999999
Q gi|254780690|r  296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLF  325 (354)
Q Consensus       296 ~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly  325 (354)
                      .+.++.++|..|++++|||+----|-|...
T Consensus       335 ~~~i~~~Lk~lA~e~~v~vi~lsQlnR~~~  364 (444)
T 3bgw_A          335 ISQISRDLKKMARELDVVVIALSQLSRQVE  364 (444)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             999999999999980996899633685311


No 46 
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=28.77  E-value=3.7  Score=20.04  Aligned_cols=29  Identities=38%  Similarity=0.465  Sum_probs=18.7

Q ss_pred             CCCCEEEECC---CCEEEEEEECCCCCCCCEE
Q ss_conf             7686998735---5307888976888888889
Q gi|254780690|r  263 SRATIIITNP---THYALALRYIQTENDAPVL  291 (354)
Q Consensus       263 ~~A~vvitNP---TH~AVAL~Y~~~~~~aP~v  291 (354)
                      .++|-+|-||   ||+++||+=--.....|.|
T Consensus        93 ~~~dgIIINPga~ThtS~Al~DAl~~~~~P~I  124 (172)
T 3n8k_A           93 DAAEPVILNAGGLTHTSVALRDACAELSAPLI  124 (172)
T ss_dssp             HHTCCEEEECGGGGGTCHHHHHHHTTCCSCEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             26763796350342344999999983599889


No 47 
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=28.27  E-value=23  Score=13.72  Aligned_cols=44  Identities=14%  Similarity=0.083  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHH-HHHHHCCCCCEEEEC------CCCEEEEEEECCCCCCCC
Q ss_conf             99999999998-898607768699873------553078889768888888
Q gi|254780690|r  246 QKSIARSRIRH-KMMEATSRATIIITN------PTHYALALRYIQTENDAP  289 (354)
Q Consensus       246 ~r~~~re~~~~-~~~~~V~~A~vvitN------PTH~AVAL~Y~~~~~~aP  289 (354)
                      +|.++.|+++- +.+.+|..|.|-++=      |++=+|-|++.++....+
T Consensus        88 ~~ale~eL~~tI~~i~gV~~ArV~l~~P~~~~~~~tASV~l~~~~~~~l~~  138 (171)
T 1yj7_A           88 NYLKEQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVNLAP  138 (171)
T ss_dssp             HHHHHHHHHHHHTTSTTEEEEEEEEEC-------CEEEEEEEECTTCCCGG
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCHH
T ss_conf             999999999999816570157999957988889851799997189987699


No 48 
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=27.46  E-value=24  Score=13.62  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=25.9

Q ss_pred             HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             4069989999997544899899999999999
Q gi|254780690|r  221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR  251 (354)
Q Consensus       221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~r  251 (354)
                      .-++|.+++.+..++.-+||.+|.+-+++++
T Consensus       136 ~~~~t~~~l~~ai~~ll~d~~y~~~a~~l~~  166 (170)
T 2o6l_A          136 FNTMSSTDLLNALKRVINDPSYKENVMKLSR  166 (170)
T ss_dssp             TTTCCHHHHHHHHHHHHHCHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             0578999999999999789999999999999


No 49 
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A
Probab=27.45  E-value=24  Score=13.62  Aligned_cols=21  Identities=10%  Similarity=0.245  Sum_probs=10.7

Q ss_pred             CCCHHHHHHHHHHHHCCCCEE
Q ss_conf             765899999999997399788
Q gi|254780690|r  295 GQNLIAKKMRKIAYEHNIPIF  315 (354)
Q Consensus       295 G~~~~A~~Ir~~A~~~~Vpiv  315 (354)
                      +....|+.|++.+...++|+|
T Consensus       453 sa~K~ArfI~~lcd~~~LPLv  473 (758)
T 3k8x_A          453 SAFKTAQAINDFNNGEQLPMM  473 (758)
T ss_dssp             HHHHHHHHHHHHHHTSCCCEE
T ss_pred             HHHHHHHHHHHHHHHCCCCEE
T ss_conf             899999999999861288669


No 50 
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=27.39  E-value=7.2  Score=17.72  Aligned_cols=46  Identities=33%  Similarity=0.481  Sum_probs=29.1

Q ss_pred             HCCCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCC
Q ss_conf             077686998735---53078889768888888899807658999999999973997886---88999999972889
Q gi|254780690|r  261 ATSRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPI  330 (354)
Q Consensus       261 ~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~i  330 (354)
                      +-.++|-+|-||   ||+++||                        ++--+..++|++|   +.+-+|.=|++.-+
T Consensus        70 ~~~~~dgiIiNPga~ThtS~al------------------------~DAl~~~~~p~iEVHlSNi~~RE~fR~~S~  121 (153)
T 3lwz_A           70 ARGNTDFILINPAAFTHTSVAL------------------------RDALLGVQIPFIEIHLSNVHAREPFRHHSY  121 (153)
T ss_dssp             HTTTCSEEEEECGGGGGTCHHH------------------------HHHHHHHTCCEEEEESSCGGGSCGGGGCCS
T ss_pred             HHCCCCEEEECCCCCEEEHHHH------------------------HHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             7465766997476403203779------------------------999984599989999548412466454553


No 51 
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=26.96  E-value=23  Score=13.69  Aligned_cols=116  Identities=9%  Similarity=0.104  Sum_probs=54.9

Q ss_pred             HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE------CCCCEEEEEEECCCCCCCCEEEEE
Q ss_conf             40699899999975448998999999999999999889860776869987------355307888976888888889980
Q gi|254780690|r  221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT------NPTHYALALRYIQTENDAPVLVAK  294 (354)
Q Consensus       221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvit------NPTH~AVAL~Y~~~~~~aP~vvaK  294 (354)
                      +.|||--.---=..|.+-=++...+||+......+  .+.+.+.  +...      ++.|+.-.+..+           +
T Consensus       228 n~r~~ei~Aaigl~qL~~l~~~~~~R~~~~~~y~~--~L~~~~~--i~~~~~~~~~~~~~~~~~i~~~-----------~  292 (375)
T 2fnu_A          228 NFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDR--IFKDNPY--FTPLHPLLKDKSSNHLYPILMH-----------Q  292 (375)
T ss_dssp             BCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHTTCSS--EEESGGGCSSCCCCSCEEEEEC-----------G
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCC--CCCCCCCCCCCCCCEEEEEEEE-----------C
T ss_conf             00242477899999997647999999999999998--7402887--1346654333444415899993-----------2


Q ss_pred             CCCHHHHHHHHHHHHCCCCEE-------EC-----------HHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             765899999999997399788-------68-----------8999999972---889894898999999999999973
Q gi|254780690|r  295 GQNLIAKKMRKIAYEHNIPIF-------EE-----------PSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYH  351 (354)
Q Consensus       295 G~~~~A~~Ir~~A~~~~Vpiv-------e~-----------~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~  351 (354)
                      -....-..+.+.-+++||+.-       ..           -|-|..++.+   .+++..+..+--+-|++.+..+++
T Consensus       293 ~~~~~r~~l~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~p~ae~l~~~~l~LP~~~~lt~~di~~I~~~i~k~~~  370 (375)
T 2fnu_A          293 KFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE  370 (375)
T ss_dssp             GGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             310578999999998799852346661118988841766899899999849598978999899999999999999999


No 52 
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=26.70  E-value=24  Score=13.52  Aligned_cols=53  Identities=23%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             CCCEEEECCCCEEEEEEECCCCCCCCEEEEEC------CCHHHHHHHHHHHHCCCCEEECHHHHHHHHH
Q ss_conf             68699873553078889768888888899807------6589999999999739978868899999997
Q gi|254780690|r  264 RATIIITNPTHYALALRYIQTENDAPVLVAKG------QNLIAKKMRKIAYEHNIPIFEEPSLARSLFK  326 (354)
Q Consensus       264 ~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG------~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~  326 (354)
                      +.++||.-+-|.          +.++.--.++      .+.+..++|.+|++++|||+----|-|.-..
T Consensus       310 ~~~~vviDyl~~----------~~~~~~~~~~~~~~~~i~~i~~~Lk~lA~~~~i~vi~~sqlnr~~~~  368 (444)
T 2q6t_A          310 QVGLIIIDYLQL----------MSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA  368 (444)
T ss_dssp             CCCEEEEECGGG----------CBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS
T ss_pred             CCCEEEEEEHHH----------HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
T ss_conf             678599962454----------21455677642099999999999999999739879998514821022


No 53 
>2gd7_A Hexim1 protein, HMBA-inducible; transcription regulation, transcription elongation, positive transcription elongation factor-B; NMR {Homo sapiens}
Probab=26.57  E-value=18  Score=14.51  Aligned_cols=19  Identities=37%  Similarity=0.204  Sum_probs=14.5

Q ss_pred             HHHHCCCHHHHHHHHHHCC
Q ss_conf             9840699899999975448
Q gi|254780690|r  219 YSKLKMSKQEIKDEIKQSY  237 (354)
Q Consensus       219 ~k~lkMskqEvK~E~K~~E  237 (354)
                      .+=.-|||+|.-+||=+-|
T Consensus        25 ErL~~mSK~ELIqEYL~LE   43 (107)
T 2gd7_A           25 ESLQNMSKQELIKEYLELE   43 (107)
T ss_dssp             HHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHH
T ss_conf             9997446899999999999


No 54 
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=26.09  E-value=25  Score=13.44  Aligned_cols=80  Identities=14%  Similarity=0.154  Sum_probs=49.7

Q ss_pred             CCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHC----------CCCC-
Q ss_conf             68699873553078889768888888899807658999999999973997886889999999728----------8989-
Q gi|254780690|r  264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV----------PINS-  332 (354)
Q Consensus       264 ~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~----------~ig~-  332 (354)
                      .+++|+..|+...-  .++.+    +. ...-.+.....+|++|++++||+|.--..-+.+|...          .-|. 
T Consensus       269 ga~vvlvtp~~~~~--~~~~~----~~-~~~~~~~y~~~~~~vA~~~~v~~IDl~~~~~~~~~~lg~~~~~~~~~~~D~~  341 (375)
T 2o14_A          269 GADVILSTPQGRAT--DFTSE----GI-HSSVNRWYRASILALAEEEKTYLIDLNVLSSAYFTSIGPERTLGLYMDGDTL  341 (375)
T ss_dssp             TCEEEEECCCCCTT--CBCTT----SC-BCCTTSTTHHHHHHHHHHTTCEEECHHHHHHHHHHHHCHHHHHTTBCTTCSS
T ss_pred             CCEEEEEECCCCCC--CCCCC----CC-CHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCHHHCCCCCCC
T ss_conf             99599993776676--66665----55-3367999999999999981987983789999999970810111100799998


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q ss_conf             489899999999999997
Q gi|254780690|r  333 AIPPVFYKAVAQLIYKIY  350 (354)
Q Consensus       333 ~Ip~~~y~aVA~il~~v~  350 (354)
                      --.+.=|+.+|+.++.-.
T Consensus       342 Hpn~~G~~~iA~~v~~~L  359 (375)
T 2o14_A          342 HPNRAGADALARLAVQEL  359 (375)
T ss_dssp             SBBHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             979999999999999998


No 55 
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=25.01  E-value=26  Score=13.30  Aligned_cols=162  Identities=11%  Similarity=0.160  Sum_probs=73.2

Q ss_pred             CCCCCCCCCHH-HHHHH--CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             37791016934-30332--0126679999999999999999999-99983215689784089799999999999999999
Q gi|254780690|r  123 VKPSFKRVSLR-EGIKR--IYSINNLVNFMKSFVKIILVGTIIT-ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM  198 (354)
Q Consensus       123 l~pk~~rlNPi-~GlKr--iFS~k~lvel~KsllKv~li~~v~~-~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~  198 (354)
                      +...|+.||=+ .|+.+  +.-.-+--..+||.+-.    -+++ .......+.+.....++......-+....      
T Consensus       186 i~tg~~~ld~~~~G~~~g~l~vi~a~pg~GKT~~~~----~~a~~~~~~~g~~Vl~~SlEm~~~~~~~R~~a~~------  255 (454)
T 2r6a_A          186 IPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFAL----NIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAE------  255 (454)
T ss_dssp             BCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHH----HHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHH------
T ss_pred             CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHH----HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH------
T ss_conf             777927899884588888779999567765329999----8997576625980799807899999999999987------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH------H------CCCCH---HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999976679999999840699899999975------4------48998---99999999999999988986077
Q gi|254780690|r  199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK------Q------SYGNP---IIKNRQKSIARSRIRHKMMEATS  263 (354)
Q Consensus       199 ~~~~~~via~iD~~~qr~~~~k~lkMskqEvK~E~K------~------~EGdP---~iK~~~r~~~re~~~~~~~~~V~  263 (354)
                                .+..+.+   .++-+++.+|.+.-.+      +      ..+++   +++++.|..    .+      -.
T Consensus       256 ----------~~v~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~i~~~~r~~----~~------~~  312 (454)
T 2r6a_A          256 ----------GNINAQN---LRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRL----KQ------ES  312 (454)
T ss_dssp             ----------HTCCHHH---HHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHH----HT------TT
T ss_pred             ----------HCCCHHH---HCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH----HH------HC
T ss_conf             ----------3356776---3469998789999999999876366067336676468999999999----98------54


Q ss_pred             CCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHH
Q ss_conf             686998735530788897688888888998076589999999999739978868899999
Q gi|254780690|r  264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS  323 (354)
Q Consensus       264 ~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~  323 (354)
                      +.++||..+-+...+    ++......  ....+.++.++|.+|++++|||+----|-|.
T Consensus       313 g~~~vviDyl~~~~~----~~~~~~~~--~~~i~~i~~~Lk~lA~~~~v~vi~~sqlnr~  366 (454)
T 2r6a_A          313 GLGMIVIDYLQLIQG----SGRSKENR--QQEVSEISRSLKALARELEVPVIALSQLSRS  366 (454)
T ss_dssp             CCCEEEEECGGGSCC----SCC----C--HHHHHHHHHHHHHHHHHHTCCEEEEECCCTT
T ss_pred             CCCEEEEEEHHHCCC----CCCCCCCH--HHHHHHHHHHHHHHHHHHCCEEEEEECCCHH
T ss_conf             996899974442046----78888669--9999999999999999979859998156811


No 56 
>1gqo_A Dehydroquinase, dhqase; dehydratase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=24.70  E-value=6.7  Score=17.97  Aligned_cols=45  Identities=29%  Similarity=0.503  Sum_probs=28.3

Q ss_pred             HCCCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCC
Q ss_conf             077686998735---53078889768888888899807658999999999973997886---8899999997288
Q gi|254780690|r  261 ATSRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVP  329 (354)
Q Consensus       261 ~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~  329 (354)
                      +-.++|-+|-||   ||+++||+                        +--...++|++|   +.+-||.-|++.-
T Consensus        63 ~~~~~dgiIiNpga~thtS~al~------------------------Dal~~~~~p~iEVHlSNi~~RE~fR~~S  113 (143)
T 1gqo_A           63 AEEQYSGIVLNPGALSHYSYAIR------------------------DAVSSISLPVVEVHLSNLYAREEFRHQS  113 (143)
T ss_dssp             HTTTCSEEEEECGGGGGTCHHHH------------------------HHHHTSCSCEEEEESSCGGGSCGGGGCC
T ss_pred             HCCCCEEEEECCCHHHEEEEEHH------------------------HHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf             35576058856601501001199------------------------9998459998999956710046755555


No 57 
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=24.56  E-value=27  Score=13.24  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             999999766799999998406998999999754
Q gi|254780690|r  203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ  235 (354)
Q Consensus       203 ~~via~iD~~~qr~~~~k~lkMskqEvK~E~K~  235 (354)
                      ++..++.......-.|.+++..-|+|+++..|.
T Consensus       199 ~lG~ai~a~l~~~~~f~~~l~~ak~e~~~~~~~  231 (231)
T 1d2t_A          199 VVGSAVVATLHTNPAFQQQLQKAKAEFAQHQKK  231 (231)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999965999999999999999999709


No 58 
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=24.56  E-value=6.1  Score=18.31  Aligned_cols=47  Identities=28%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             CCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCCCCC
Q ss_conf             7686998735---53078889768888888899807658999999999973997886---88999999972889894
Q gi|254780690|r  263 SRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPINSA  333 (354)
Q Consensus       263 ~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~ig~~  333 (354)
                      .+.|-+|-||   ||+++||+                        +-=...++|+||   +.+-||.-|+..-+-.+
T Consensus        65 ~~~dgiIiNPga~ThtS~al~------------------------DAl~~~~~P~iEVHlSNi~~RE~fR~~S~is~  117 (149)
T 2uyg_A           65 EGFLAIVLNPGALTHYSYALL------------------------DAIRAQPLPVVEVHLTNLHAREEFRRHSVTAP  117 (149)
T ss_dssp             TTCSEEEEECGGGGGTCHHHH------------------------HHHHTSCSCEEEEESSCGGGSCGGGGCCSSGG
T ss_pred             CCCEEEEECCCHHHHHHHHHH------------------------HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             562179975522320101499------------------------99983599989998058644565566565576


No 59 
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=24.50  E-value=4.7  Score=19.18  Aligned_cols=18  Identities=28%  Similarity=0.405  Sum_probs=14.2

Q ss_pred             CCCCEEEECC---CCEEEEEE
Q ss_conf             7686998735---53078889
Q gi|254780690|r  263 SRATIIITNP---THYALALR  280 (354)
Q Consensus       263 ~~A~vvitNP---TH~AVAL~  280 (354)
                      .++|-+|-||   ||+++||+
T Consensus        71 ~~~~giIiNpga~THtS~al~   91 (156)
T 1gtz_A           71 LNHCGIVINPAAYSHTSVAIL   91 (156)
T ss_dssp             HHCSEEEEECTTHHHHCHHHH
T ss_pred             CCCCEEEECCHHHHHHHHHHH
T ss_conf             257359974503422458899


No 60 
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=24.40  E-value=24  Score=13.61  Aligned_cols=29  Identities=10%  Similarity=0.236  Sum_probs=20.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEECHH
Q ss_conf             899807658999999999973997886889
Q gi|254780690|r  290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPS  319 (354)
Q Consensus       290 ~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~  319 (354)
                      +|+++|... ...+.+.|++++||++..+.
T Consensus        87 iI~t~~~~~-p~~l~~~a~~~~ipll~s~~  115 (312)
T 1knx_A           87 IILTKSFTD-PTVLLQVNQTYQVPILKTDF  115 (312)
T ss_dssp             EEEETTTCC-CHHHHHHGGGTCCCEEEESS
T ss_pred             EEEECCCCC-CHHHHHHHHHCCCEEEECCC
T ss_conf             999894999-99999999983943998487


No 61 
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=24.14  E-value=27  Score=13.18  Aligned_cols=25  Identities=8%  Similarity=0.130  Sum_probs=16.8

Q ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             9343033201266799999999999
Q gi|254780690|r  131 SLREGIKRIYSINNLVNFMKSFVKI  155 (354)
Q Consensus       131 NPi~GlKriFS~k~lvel~KsllKv  155 (354)
                      ||-+=-...+|.+.+-+++.-.-+-
T Consensus       171 ~P~NPTG~~~s~~~~~~l~~~~~~~  195 (388)
T 1j32_A          171 TPSNPTGMVYTPDEVRAIAQVAVEA  195 (388)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             9989987348899999999630027


No 62 
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=23.85  E-value=27  Score=13.14  Aligned_cols=156  Identities=12%  Similarity=0.114  Sum_probs=72.6

Q ss_pred             HHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             30332--0126679999999999999999999999832156897840897999999999999999999999999999766
Q gi|254780690|r  134 EGIKR--IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI  211 (354)
Q Consensus       134 ~GlKr--iFS~k~lvel~KsllKv~li~~v~~~~i~~~~~~l~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~via~iD~  211 (354)
                      .|+.+  +.=+-+--..+||.+-.    -++.-+.....+.+.....++......-+.....                ..
T Consensus        63 gG~~~G~l~vi~g~pg~GKT~~~l----~l~~~~~~~g~~vl~~SlEm~~~~l~~R~~~~~~----------------~v  122 (315)
T 3bh0_A           63 YGYKRRNFVLIAARPSMGKTAFAL----KQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAG----------------SI  122 (315)
T ss_dssp             SSBCTTCEEEEECCTTSSHHHHHH----HHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHT----------------TC
T ss_pred             CCCCCCCEEEEEECCCCCHHHHHH----HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH----------------CC
T ss_conf             697888089999579999999999----9999874169829998476888789999999984----------------85


Q ss_pred             HHHHHHHHHHHCCCHHHH---HHH---HHHC------CC---CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEE
Q ss_conf             799999998406998999---999---7544------89---98999999999999999889860776869987355307
Q gi|254780690|r  212 GWSYHQWYSKLKMSKQEI---KDE---IKQS------YG---NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA  276 (354)
Q Consensus       212 ~~qr~~~~k~lkMskqEv---K~E---~K~~------EG---dP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~A  276 (354)
                      .+.+.+.. ...++.+|.   .+-   .++.      ..   ...++.+.++..+        ..-.+.++|+..+-+..
T Consensus       123 ~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~viviD~l~~~  193 (315)
T 3bh0_A          123 NAQKIKAA-RRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKR--------KNPGKRVIVMIDYLQLL  193 (315)
T ss_dssp             CHHHHHSC-HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHH--------TSSSCCEEEEEECGGGS
T ss_pred             CHHHHHCC-CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH--------HHCCCCCHHHHHHHHHH
T ss_conf             45544213-4313488999999999876418747854877534899999999888--------63477521057798750


Q ss_pred             EEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf             8889768888888899807658999999999973997886889999999
Q gi|254780690|r  277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF  325 (354)
Q Consensus       277 VAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly  325 (354)
                      ..-....+     .  -.-.+++..+++.+|++++|||+---.|-|.-.
T Consensus       194 ~~~~~~~~-----~--~~~i~~i~~~Lk~lA~~~~i~ii~lsQlnr~~~  235 (315)
T 3bh0_A          194 EPAKANDS-----R--TNQISQISRDLKKMARELDVVVIALSQLSRQVE  235 (315)
T ss_dssp             BCSCTTSC-----H--HHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGT
T ss_pred             CCCCCCCC-----H--HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             36777878-----9--999999999999999973997899975363201


No 63 
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2c4v_A* 1j2y_A* 2wks_A* 2xb9_A*
Probab=23.83  E-value=6.2  Score=18.23  Aligned_cols=18  Identities=39%  Similarity=0.532  Sum_probs=15.0

Q ss_pred             CCCCEEEECC---CCEEEEEE
Q ss_conf             7686998735---53078889
Q gi|254780690|r  263 SRATIIITNP---THYALALR  280 (354)
Q Consensus       263 ~~A~vvitNP---TH~AVAL~  280 (354)
                      .++|-+|-||   ||+++||+
T Consensus        77 ~~~dgiIiNPga~ThtS~al~   97 (176)
T 2c4w_A           77 SEYEGIIINPGAFSHTSIAIA   97 (176)
T ss_dssp             SSCCEEEEECGGGGGTCHHHH
T ss_pred             CCCCEEEECCCCCEEHHHHHH
T ss_conf             893289975763133006799


No 64 
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=23.04  E-value=20  Score=14.21  Aligned_cols=64  Identities=17%  Similarity=0.213  Sum_probs=39.9

Q ss_pred             HHHHHCCCHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHH--H-HHHHCCCCCEEEECCCCEEEEEEECCC
Q ss_conf             998406998999999754-------489989999999999999998--8-986077686998735530788897688
Q gi|254780690|r  218 WYSKLKMSKQEIKDEIKQ-------SYGNPIIKNRQKSIARSRIRH--K-MMEATSRATIIITNPTHYALALRYIQT  284 (354)
Q Consensus       218 ~~k~lkMskqEvK~E~K~-------~EGdP~iK~~~r~~~re~~~~--~-~~~~V~~A~vvitNPTH~AVAL~Y~~~  284 (354)
                      |..+-++|+.++++|..|       -+|+++|=..+|....-+-.+  . .-.=+..|.+++.|+.   ....||.-
T Consensus        27 W~s~~p~T~~qL~~~R~EFWDTap~~~Gr~EIW~ALraA~ea~~~~D~~tAQ~IldaAgItvp~gd---L~~cYDe~  100 (137)
T 2ksn_A           27 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGA---LTECYDEL  100 (137)
T ss_dssp             SSCSSCCSHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSCBCSSCC---SSEEEETT
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCCC---HHHHHHCC
T ss_conf             578997279999999998872586348879999999999998751899999999986397636750---89998766


No 65 
>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A
Probab=22.66  E-value=29  Score=12.97  Aligned_cols=29  Identities=24%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             999999972889894898999999999999
Q gi|254780690|r  319 SLARSLFKQVPINSAIPPVFYKAVAQLIYK  348 (354)
Q Consensus       319 ~LAR~Ly~~~~ig~~Ip~~~y~aVA~il~~  348 (354)
                      -||-++|. ..--++=|+++|++||.+++.
T Consensus        87 rla~siyg-~p~q~p~peefi~av~~v~~e  115 (139)
T 2r18_A           87 RAATSIYG-APGQAEPPQAFIDEVAKVYEI  115 (139)
T ss_dssp             HHHHHHHC-CGGGCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCC-CCCCCCCCHHHHHHHHHHHHH
T ss_conf             99875238-855699888999999999999


No 66 
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=22.44  E-value=29  Score=12.94  Aligned_cols=39  Identities=15%  Similarity=0.137  Sum_probs=26.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEECH----HHHHHHHH
Q ss_conf             8889980765899999999997399788688----99999997
Q gi|254780690|r  288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEP----SLARSLFK  326 (354)
Q Consensus       288 aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~----~LAR~Ly~  326 (354)
                      +.-++--|--.....|.+.|++.||||+..+    .-|+.+++
T Consensus        75 ~a~lIlTg~~~p~~~vl~la~~~gipvi~t~~dT~~ta~~i~~  117 (139)
T 2ioj_A           75 VRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTLTAVSRLES  117 (139)
T ss_dssp             EEEEEEETTCCCCHHHHHHHHHHTCCEEECSSCHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf             6399993999978999999987699489947879999999999


No 67 
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=22.42  E-value=21  Score=13.98  Aligned_cols=13  Identities=23%  Similarity=0.268  Sum_probs=6.7

Q ss_pred             HHCCCHHHCCCCC
Q ss_conf             1013712137791
Q gi|254780690|r  115 IPVLNLNHVKPSF  127 (354)
Q Consensus       115 G~~fs~k~l~pk~  127 (354)
                      -.+|.=||+.++.
T Consensus        90 khV~~EKP~a~~~  102 (345)
T 3f4l_A           90 KNVLVEKPFTPTL  102 (345)
T ss_dssp             CEEEECSSSCSSH
T ss_pred             CEEEECCCCHHHH
T ss_conf             9098434310125


No 68 
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=21.76  E-value=30  Score=12.85  Aligned_cols=51  Identities=14%  Similarity=0.040  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999766799999998406998999999754489989999999999999998898
Q gi|254780690|r  206 LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM  259 (354)
Q Consensus       206 ia~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~  259 (354)
                      --++||.=+||+.....-.|-+|+=||-++.+=.|..|..   ++.|...++..
T Consensus        14 aKIV~~MK~RHq~g~~hPLtLeEiLDEtn~~Di~~~~k~W---L~~EAL~nNPK   64 (81)
T 1d8j_A           14 AKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQW---LMTEALVNNPK   64 (81)
T ss_dssp             HHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHH---HHTTHHHHCTT
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHH---HHHHHHCCCCC
T ss_conf             9999999988715898874599999888634535789999---98704036995


No 69 
>3glc_A Aldolase LSRF; TIM barrel, cytoplasm, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli k-12} PDB: 3gnd_A* 3gkf_O
Probab=21.73  E-value=30  Score=12.84  Aligned_cols=93  Identities=22%  Similarity=0.237  Sum_probs=54.1

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECC---CHHHHHHHHHHHHC
Q ss_conf             544899899999999999999988986077686998735530788897688888888998076---58999999999973
Q gi|254780690|r  234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ---NLIAKKMRKIAYEH  310 (354)
Q Consensus       234 K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~---~~~A~~Ir~~A~~~  310 (354)
                      ++.+.||+.=+.--++..|          -.||+|.|+||.=  ..+......+.|+|++-|.   |.-.++.-+.|-+.
T Consensus       182 ~~~~~d~~~ia~aaR~a~E----------lGADiVK~~y~~~--~~~~v~~a~~vPvv~~GG~~~~d~~~l~~~~~Ai~a  249 (295)
T 3glc_A          182 KDMVRDQRYFSLATRIAAE----------MGAQIIKTYYVEK--GFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQ  249 (295)
T ss_dssp             ---CCSHHHHHHHHHHHHH----------TTCSEEEEECCTT--THHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHH----------HCCCEEECCCCCC--CHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             6565347999999999999----------5899546048852--377752158864687689875578999999999987


Q ss_pred             CCCEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             997886889999999728898948989999999999
Q gi|254780690|r  311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI  346 (354)
Q Consensus       311 ~Vpive~~~LAR~Ly~~~~ig~~Ip~~~y~aVA~il  346 (354)
                      |--=+-   .-|.+|..     +=|....+|+.+|+
T Consensus       250 Ga~Gvv---iGRnI~Q~-----~dP~~~~~ai~~iV  277 (295)
T 3glc_A          250 GASGVD---MGRNIFQS-----DHPVAMMKAVQAVV  277 (295)
T ss_dssp             TCSEEE---ESHHHHTS-----SSHHHHHHHHHHHH
T ss_pred             CCCEEE---ECCCCCCC-----CCHHHHHHHHHHHH
T ss_conf             990999---68530058-----89999999999998


No 70 
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=21.59  E-value=23  Score=13.79  Aligned_cols=82  Identities=11%  Similarity=0.017  Sum_probs=34.9

Q ss_pred             HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE-----EEECCCCEEEEEEECCCCCCCCEEEEEC
Q ss_conf             40699899999975448998999999999999999889860776869-----9873553078889768888888899807
Q gi|254780690|r  221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKG  295 (354)
Q Consensus       221 ~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~v-----vitNPTH~AVAL~Y~~~~~~aP~vvaKG  295 (354)
                      +.|||--.--==..+.+-=++.-.+||++..-..+  .+++.+.-..     -.++.+|+..-+.. +.          .
T Consensus       234 n~rms~l~Aai~~~qL~~l~~~~~~R~~~~~~y~~--~L~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~----------~  300 (388)
T 1b9h_A          234 NMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSR--LLGAIDGVVPQGGDVRADRNSHYMAMFRI-PG----------L  300 (388)
T ss_dssp             BCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHHTSTTCEECCCCTTCCBCCCSEEEEEC-TT----------C
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCCEEEEEEEE-EC----------C
T ss_conf             66641577999999999999999999999999999--71379983146657565510001000232-01----------2


Q ss_pred             CCHHHHHHHHHHHHCCCCEE
Q ss_conf             65899999999997399788
Q gi|254780690|r  296 QNLIAKKMRKIAYEHNIPIF  315 (354)
Q Consensus       296 ~~~~A~~Ir~~A~~~~Vpiv  315 (354)
                      ...--..+.+.-+++||+.-
T Consensus       301 ~~~~R~~l~~~L~~~gI~~~  320 (388)
T 1b9h_A          301 TEERRNALVDRLVEAGLPAF  320 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEE
T ss_conf             24689999999998799875


No 71 
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=21.48  E-value=30  Score=12.80  Aligned_cols=32  Identities=9%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             HHCCCCCCCCCHHHHHHHCCCHHH---HHHHHHHHH
Q ss_conf             213779101693430332012667---999999999
Q gi|254780690|r  121 NHVKPSFKRVSLREGIKRIYSINN---LVNFMKSFV  153 (354)
Q Consensus       121 k~l~pk~~rlNPi~GlKriFS~k~---lvel~Ksll  153 (354)
                      +.+ -|++.+||-.=..|++++--   |+|-+....
T Consensus       276 E~~-~dle~F~p~~~~~rilGmGDi~~L~ek~~~~~  310 (443)
T 3dm5_A          276 EKI-DDIEPFDPPRFVSRLLGLGDIQGLLEKFKELE  310 (443)
T ss_dssp             SST-TCEEECCHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             CCC-CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             884-24552699999999828973799999999987


No 72 
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=21.39  E-value=30  Score=12.79  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=29.5

Q ss_pred             CCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCC
Q ss_conf             686998735---53078889768888888899807658999999999973997886---88999999972889
Q gi|254780690|r  264 RATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPI  330 (354)
Q Consensus       264 ~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~i  330 (354)
                      ..+.+|.||   ||+++                        .||+--+..++|+||   +.+-||.-|++.-+
T Consensus        83 ~~~gIIiNpga~THtSi------------------------ai~DAL~~~~~P~iEVHlSNi~~RE~fR~~Sv  131 (167)
T 3kip_A           83 GVGFVVINAGAYTHTSV------------------------GIRDALLGTAIPFIEVHITNVHQREPFRHQSY  131 (167)
T ss_dssp             TCCEEEEECGGGGGTCH------------------------HHHHHHHHTTCCEEEEESSCGGGSCGGGGCCS
T ss_pred             CCEEEEECCCHHEEEHH------------------------HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             82489835410112011------------------------16989985499889998178522465554641


No 73 
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=20.88  E-value=31  Score=12.71  Aligned_cols=39  Identities=26%  Similarity=0.507  Sum_probs=28.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHH-HHHHH
Q ss_conf             8888899807658999999999973997886889-99999
Q gi|254780690|r  286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS-LARSL  324 (354)
Q Consensus       286 ~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~-LAR~L  324 (354)
                      ..-|++++-=-+....+.|+.-+++|||+.++|. -+|++
T Consensus       402 ~~kPvv~~~~g~~~~~~~~~~l~~~Gip~f~~pe~a~~Al  441 (457)
T 2csu_A          402 NEKPVLAMFMAGYVSEKAKELLEKNGIPTYERPEDVASAA  441 (457)
T ss_dssp             CCCCEEEEEECTTTTHHHHHHHHTTTCCEESSHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             9997899978976609999999868998679999999999


No 74 
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain closure; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 1tpl_A 2tpl_A* 1c7g_A*
Probab=20.71  E-value=31  Score=12.69  Aligned_cols=48  Identities=21%  Similarity=0.199  Sum_probs=27.0

Q ss_pred             HHHHHHCCCCEEECHHHHHHHHHHCCCCCC-----------C-----CHHHHHHHHHHHHHHHHHC
Q ss_conf             999997399788688999999972889894-----------8-----9899999999999997302
Q gi|254780690|r  304 RKIAYEHNIPIFEEPSLARSLFKQVPINSA-----------I-----PPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       304 r~~A~~~~Vpive~~~LAR~Ly~~~~ig~~-----------I-----p~~~y~aVA~il~~v~~lk  353 (354)
                      .++..+.||-..+.-.++  .......|+.           +     -.+.-.-|++.|..+|+.+
T Consensus       368 ~~l~~~~GIr~~~~g~~~--~~~~~~~g~~~~~~~e~vRlalpr~~~T~eeiDyV~e~l~~v~~~~  431 (456)
T 2ez2_A          368 ASIYVETGVRSMERGIIS--AGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK  431 (456)
T ss_dssp             HHHHHHHSEECEEESHHH--HCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHCCCEECCCCCC--CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999996092110356433--5767666776777546179866887789999999999999999606


No 75 
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=20.64  E-value=31  Score=12.68  Aligned_cols=53  Identities=13%  Similarity=0.113  Sum_probs=33.1

Q ss_pred             CCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHH
Q ss_conf             768699873553078889768888888899807658999999999973997886889999
Q gi|254780690|r  263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR  322 (354)
Q Consensus       263 ~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR  322 (354)
                      .+.++||.-|-+.-..-   .+. .-   -....++++.+++++|++++|||+----+-|
T Consensus       146 ~~~~~ivID~l~~l~~~---~~~-~~---~~~~~~~~~~~Lk~la~~~~v~vi~~~q~~r  198 (296)
T 1cr0_A          146 LGCDVIILDHISIVVSA---SGE-SD---ERKMIDNLMTKLKGFAKSTGVVLVVICHLKN  198 (296)
T ss_dssp             TCCSEEEEEEEC------------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-
T ss_pred             CCCCEEEEECCCEECCC---CCC-CC---HHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             68858999443000268---876-40---4788999999999999973882899960472


No 76 
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=20.61  E-value=31  Score=12.67  Aligned_cols=35  Identities=3%  Similarity=-0.010  Sum_probs=20.5

Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99998406998999999754489989999999999
Q gi|254780690|r  216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA  250 (354)
Q Consensus       216 ~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~  250 (354)
                      -++.++.|=+.+|+++|.++.+.+-+++..++...
T Consensus        34 Gk~i~~fk~~~~e~~~~~~~~~~~~e~~~~~~~~~   68 (78)
T 2l16_A           34 GRTLLEFKSATKSLVSGDEKEEKSAELTAVKQDKN   68 (78)
T ss_dssp             HHHHHHHHHHHHHHHHCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998999998877655778887698


No 77 
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=20.45  E-value=20  Score=14.20  Aligned_cols=27  Identities=15%  Similarity=0.165  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999766799999998406
Q gi|254780690|r  197 IMILLFIATLTVLDIGWSYHQWYSKLK  223 (354)
Q Consensus       197 ~~~~~~~~via~iD~~~qr~~~~k~lk  223 (354)
                      ..+++.+++++++-|..=+--|.|+.|
T Consensus        17 vsv~~GlLlL~ll~~~LwK~GFFKR~r   43 (54)
T 2knc_A           17 VGVLGGLLLLTILVLAMWKVGFFKRNR   43 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999999999999999999827312679


No 78 
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=20.34  E-value=16  Score=14.92  Aligned_cols=15  Identities=7%  Similarity=0.104  Sum_probs=6.6

Q ss_pred             HHHHHHHHHCCCCEE
Q ss_conf             999999997399788
Q gi|254780690|r  301 KKMRKIAYEHNIPIF  315 (354)
Q Consensus       301 ~~Ir~~A~~~~Vpiv  315 (354)
                      .++++.|++++.+++
T Consensus       102 ~~l~~~a~~~~~~i~  116 (253)
T 1j5p_A          102 ERFFSELKNSPARVF  116 (253)
T ss_dssp             HHHHHHHHTCSCEEE
T ss_pred             HHHHHHHHHCCCEEE
T ss_conf             999999997299399


No 79 
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=20.29  E-value=4  Score=19.70  Aligned_cols=69  Identities=26%  Similarity=0.331  Sum_probs=43.1

Q ss_pred             HCCCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCCCCCC
Q ss_conf             077686998735---53078889768888888899807658999999999973997886---889999999728898948
Q gi|254780690|r  261 ATSRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPINSAI  334 (354)
Q Consensus       261 ~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~ig~~I  334 (354)
                      +..++|-+|-||   ||+++||+                        +--...++|++|   +.+-+|.-|++.-+=.++
T Consensus        64 ~~~~~dgiIiNpga~ThtS~al~------------------------DAl~~~~~P~iEVHlSNi~~RE~fR~~S~is~~  119 (154)
T 1uqr_A           64 AFQNTDFIIINPGAFTHTSVAIR------------------------DALLAVSIPFIEVHLSNVHAREPFRHHSYLSDV  119 (154)
T ss_dssp             TTTTCCEEEEECTTHHHHCHHHH------------------------HHHHHHTCCEEEEESSCGGGSCGGGSCCSSGGG
T ss_pred             HHCCCCEEEECCCCCEEEHHHHH------------------------HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             75367789972763031037899------------------------999854998899982584224654545545610


Q ss_pred             ---------CHHHHHHHHHHHHHHHHHC
Q ss_conf             ---------9899999999999997302
Q gi|254780690|r  335 ---------PPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       335 ---------p~~~y~aVA~il~~v~~lk  353 (354)
                               +..+..|+-.++..+.+.+
T Consensus       120 ~~g~i~G~G~~~Y~lAl~~l~~~l~k~~  147 (154)
T 1uqr_A          120 AKGVICGLGAKGYDYALDFAISELQKIQ  147 (154)
T ss_dssp             SSEEEESSTTHHHHHHHHHHHHHHHTC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf             2189953887999999999999998765


No 80 
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=20.24  E-value=22  Score=13.90  Aligned_cols=22  Identities=5%  Similarity=0.021  Sum_probs=11.8

Q ss_pred             CCCHHHHHHHHHHCC-CCCHHHH
Q ss_conf             658787999998578-7513359
Q gi|254780690|r   13 APSSKKIEDALNEGN-APISREA   34 (354)
Q Consensus        13 ~PT~kRL~dARekGq-V~kS~el   34 (354)
                      +|++.|+++..++-. .+...++
T Consensus        38 d~~~~~~~~~a~~~~~~~~~~~~   60 (359)
T 3m2t_A           38 DSDLERARRVHRFISDIPVLDNV   60 (359)
T ss_dssp             CSSHHHHGGGGGTSCSCCEESSH
T ss_pred             CCCHHHHHHHHHHCCCCCEECCH
T ss_conf             89999999999884998531899


Done!