Query gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] Match_columns 354 No_of_seqs 156 out of 1618 Neff 7.0 Searched_HMMs 13730 Date Wed Jun 1 07:34:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780690.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 g3c01.1 d.367.1.1 (A:239-258,E 100.0 1.9E-33 1.4E-37 281.7 10.0 102 252-353 1-102 (108) 2 g2vt1.1 d.367.1.1 (A:237-257,B 100.0 4.9E-33 3.6E-37 278.4 7.7 102 251-352 1-102 (102) 3 g3bzy.1 d.367.1.1 (A:246-262,B 100.0 3.3E-32 2.4E-36 271.9 10.0 98 256-353 2-99 (100) 4 d1wo8a1 c.24.1.2 (A:1-126) Met 77.2 1 7.5E-05 22.5 3.4 37 296-332 88-124 (126) 5 d1b93a_ c.24.1.2 (A:) Methylgl 68.4 2.8 0.0002 19.1 3.8 64 234-329 66-131 (148) 6 d1vmda_ c.24.1.2 (A:) Methylgl 61.8 4 0.00029 17.9 3.6 67 233-331 64-133 (156) 7 d1uk5a_ a.7.7.1 (A:) BAG-famil 61.2 4.2 0.00031 17.7 3.7 33 224-256 65-97 (111) 8 d1m7ka_ a.7.7.1 (A:) Silencer 60.4 3.4 0.00025 18.4 3.1 40 216-256 34-73 (81) 9 d1ugoa_ a.7.7.1 (A:) BAG-famil 60.0 3.5 0.00025 18.3 3.1 33 224-256 53-85 (99) 10 d1a9xa2 c.24.1.1 (A:936-1073) 54.3 5.4 0.00039 16.8 3.3 67 233-332 57-123 (138) 11 d1b4ub_ c.56.6.1 (B:) LigB sub 51.2 6.2 0.00045 16.3 5.7 32 287-318 89-120 (298) 12 d1ko7a1 c.98.2.1 (A:1-129) HPr 47.6 5 0.00037 17.1 2.2 31 287-318 81-111 (129) 13 d1knxa1 c.98.2.1 (A:1-132) HPr 44.3 4.1 0.0003 17.8 1.4 31 288-319 85-115 (132) 14 d2csua3 c.23.4.1 (A:291-453) A 42.5 8.2 0.0006 15.4 3.2 36 286-321 112-147 (163) 15 d1o69a_ c.67.1.4 (A:) Aminotra 39.9 7.3 0.00053 15.8 2.1 54 298-351 301-374 (374) 16 d1t9ba1 c.31.1.3 (A:290-460) A 37.9 9.6 0.0007 14.9 3.6 32 287-318 11-46 (171) 17 d1qzxa2 a.36.1.1 (A:295-432) S 37.5 8.5 0.00062 15.3 2.1 25 138-162 31-55 (138) 18 d1r9da_ c.7.1.1 (A:) Glycerol 37.1 6.3 0.00046 16.3 1.4 24 208-232 286-309 (786) 19 d1wkca_ c.124.1.6 (A:) Hypothe 35.2 10 0.00076 14.6 2.3 12 224-235 1-12 (175) 20 d1o4sa_ c.67.1.1 (A:) Aspartat 34.4 11 0.00078 14.5 3.9 58 289-349 314-372 (375) 21 d1scfa_ a.26.1.2 (A:) Stem cel 33.1 10 0.00073 14.7 1.9 16 56-71 40-55 (131) 22 d1wy5a1 c.26.2.5 (A:1-216) Til 31.2 9.9 0.00072 14.7 1.6 20 300-319 174-193 (216) 23 d1vl2a1 c.26.2.1 (A:2-169) Arg 30.5 9.2 0.00067 15.0 1.4 13 302-314 156-168 (168) 24 d1j20a1 c.26.2.1 (A:1-165) Arg 27.8 13 0.00096 13.8 1.8 14 301-314 151-164 (165) 25 d1h05a_ c.23.13.1 (A:) Type II 27.5 1.8 0.00013 20.7 -2.7 29 263-291 65-96 (144) 26 d1uqra_ c.23.13.1 (A:) Type II 26.1 3.4 0.00025 18.4 -1.5 67 261-351 64-145 (146) 27 d1mdoa_ c.67.1.4 (A:) Aminotra 25.6 9.8 0.00071 14.8 0.8 122 220-350 232-375 (376) 28 d1kzyc2 c.15.1.4 (C:1867-1972) 24.5 10 0.00073 14.7 0.7 38 290-329 53-90 (106) 29 d1gqoa_ c.23.13.1 (A:) Type II 24.2 4 0.00029 17.8 -1.4 20 261-280 63-85 (141) 30 d2fnua1 c.67.1.4 (A:2-372) Spo 24.0 13 0.00098 13.7 1.3 123 220-351 226-369 (371) 31 d1d8ja_ a.4.5.18 (A:) The cent 23.4 16 0.0012 13.1 4.6 55 206-263 14-68 (81) 32 d1c7ga_ c.67.1.2 (A:) Tyrosine 22.9 16 0.0012 13.0 2.2 50 302-353 366-431 (456) 33 d1g8fa2 c.26.1.5 (A:169-389) A 22.9 16 0.0012 13.0 3.4 46 220-273 2-56 (221) 34 d2v1pa1 c.67.1.2 (A:5-471) Try 22.1 17 0.0012 12.9 2.4 50 303-352 378-441 (467) 35 d1cr2a_ c.37.1.11 (A:) Gene 4 21.9 17 0.0012 12.9 4.0 54 263-323 146-199 (277) 36 d1gtza_ c.23.13.1 (A:) Type II 20.8 3.6 0.00026 18.2 -2.2 18 264-281 71-91 (149) 37 d2c4va1 c.23.13.1 (A:1-158) Ty 20.3 2.7 0.0002 19.2 -2.9 64 264-351 69-147 (158) No 1 >g3c01.1 d.367.1.1 (A:239-258,E:259-346) Surface presentation of antigens protein SpaS {Salmonella typhimurium [TaxId: 90371]} Probab=100.00 E-value=1.9e-33 Score=281.66 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=99.2 Q ss_pred HHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCC Q ss_conf 99998898607768699873553078889768888888899807658999999999973997886889999999728898 Q gi|254780690|r 252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 (354) Q Consensus 252 e~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig 331 (354) |+++++|+++|++|||||||||||||||+||+++++||+|+|||.|.+|.+||++|++|||||+|||+|||+||+++++| T Consensus 1 Ei~~~~~~~~v~~a~vvi~NPTh~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A~~~gIPi~e~~~LAr~L~~~~~ig 80 (108) T g3c01.1 1 EILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRY 80 (108) T ss_dssp CCSCHHHHHHHHTCSEEEECCCCEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTT T ss_pred CCCCHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCC T ss_conf 91105568418878889978871699999778889898899985758999999999985995897899999999728789 Q ss_pred CCCCHHHHHHHHHHHHHHHHHC Q ss_conf 9489899999999999997302 Q gi|254780690|r 332 SAIPPVFYKAVAQLIYKIYHKK 353 (354) Q Consensus 332 ~~Ip~~~y~aVA~il~~v~~lk 353 (354) ++||+++|++||+||+|||+++ T Consensus 81 ~~IP~ely~aVA~IL~~v~~l~ 102 (108) T g3c01.1 81 DLVSLEEIDEVLRLLVWLEEVE 102 (108) T ss_dssp CBCCHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHH T ss_conf 8389999999999999999988 No 2 >g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]} Probab=99.97 E-value=4.9e-33 Score=278.42 Aligned_cols=102 Identities=24% Similarity=0.283 Sum_probs=99.4 Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCC Q ss_conf 99999889860776869987355307888976888888889980765899999999997399788688999999972889 Q gi|254780690|r 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 (354) Q Consensus 251 re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~i 330 (354) +|+++++++++|++|||||||||||||||+||+++++||+|+|||.|.+|.+||++|++|||||+||++|||+||+++++ T Consensus 1 ~ei~~~~~~~~v~~a~vvv~NPTh~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A~e~gIPi~ed~~LAr~L~~~~~i 80 (102) T g2vt1.1 1 IEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTK 80 (102) T ss_dssp CCCSCHHHHHHHHTCSEEEECCCSEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCS T ss_pred CCCHHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCC T ss_conf 92012558740877888997897479999976888989889998577899999999998499699899999999974888 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 8948989999999999999730 Q gi|254780690|r 331 NSAIPPVFYKAVAQLIYKIYHK 352 (354) Q Consensus 331 g~~Ip~~~y~aVA~il~~v~~l 352 (354) |++||+|+|++||+||+|||++ T Consensus 81 g~~IP~ely~aVAeIL~~v~~l 102 (102) T g2vt1.1 81 YSFVDFEHLDEVLRLIVWLEQV 102 (102) T ss_dssp SEECCTTTHHHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHHHHHHHHC T ss_conf 9958999999999999999759 No 3 >g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]} Probab=99.97 E-value=3.3e-32 Score=271.90 Aligned_cols=98 Identities=32% Similarity=0.460 Sum_probs=95.8 Q ss_pred HHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCC Q ss_conf 88986077686998735530788897688888888998076589999999999739978868899999997288989489 Q gi|254780690|r 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 (354) Q Consensus 256 ~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip 335 (354) ++|+++|++|||||||||||||||+||+++++||+|+|||.|.+|++||++|++|||||+||++|||+||+++++|++|| T Consensus 2 g~~~~~v~~a~vvi~NPTh~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A~e~gIPi~~d~~LAr~Ly~~~~ig~~IP 81 (100) T g3bzy.1 2 GSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKGQYIT 81 (100) T ss_dssp CHHHHHHHHCSEEEECCCCEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCTTCBCC T ss_pred CCHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCC T ss_conf 14444288788899789779999998689898988999718678999999999849978978999999997688989669 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 899999999999997302 Q gi|254780690|r 336 PVFYKAVAQLIYKIYHKK 353 (354) Q Consensus 336 ~~~y~aVA~il~~v~~lk 353 (354) +++|++||+||+|+|++. T Consensus 82 ~ely~aVAeIL~~v~~ld 99 (100) T g3bzy.1 82 EDFFEPVAQLIRIAIDLD 99 (100) T ss_dssp GGGHHHHHHHHHHHCCCC T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 999999999999999632 No 4 >d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus thermophilus [TaxId: 274]} Probab=77.16 E-value=1 Score=22.51 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=30.9 Q ss_pred CCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCC Q ss_conf 6589999999999739978868899999997288989 Q gi|254780690|r 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 (354) Q Consensus 296 ~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~ 332 (354) ...--..||+.|-+++||++-|...|+++-...+-|. T Consensus 88 ~~~D~~~iRR~a~~~~IP~~Tn~~~A~a~v~al~~g~ 124 (126) T d1wo8a1 88 HEPDVQALMRVCNVHGVPLATNLVAAEALIAWIRKGT 124 (126) T ss_dssp THHHHHHHHHHHHHTTCCEECSHHHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCC T ss_conf 5102899999999739998967999999999998449 No 5 >d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia coli [TaxId: 562]} Probab=68.37 E-value=2.8 Score=19.13 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=45.1 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE--CCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCC Q ss_conf 5448998999999999999999889860776869987--35530788897688888888998076589999999999739 Q gi|254780690|r 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT--NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311 (354) Q Consensus 234 K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvit--NPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~ 311 (354) +..+|||+|=..++. .+=|.||- ||++ .++...-...||+.|-.++ T Consensus 66 ~~~gg~p~I~d~I~~--------------g~I~lVIn~~d~~~------------------~~~~~~D~~~IRR~a~~~~ 113 (148) T d1b93a_ 66 GPMGGDQQVGALISE--------------GKIDVLIFFWDPLN------------------AVPHDPDVKALLRLATVWN 113 (148) T ss_dssp GGGTHHHHHHHHHHT--------------TCCCEEEEECCTTS------------------CCTTHHHHHHHHHHHHHTT T ss_pred CCCCCCCCHHHHHHC--------------CCCCEEEECCCCCC------------------CCCCCCCHHHHHHHHHHCC T ss_conf 788778689999984--------------98549997567767------------------7767551999999999709 Q ss_pred CCEEECHHHHHHHHHHCC Q ss_conf 978868899999997288 Q gi|254780690|r 312 IPIFEEPSLARSLFKQVP 329 (354) Q Consensus 312 Vpive~~~LAR~Ly~~~~ 329 (354) ||++-|...|+++-+... T Consensus 114 IP~~Tn~~tA~a~l~a~~ 131 (148) T d1b93a_ 114 IPVATNVATADFIIQSPH 131 (148) T ss_dssp CCEESSHHHHHHHHTSGG T ss_pred CCEEECHHHHHHHHHHHH T ss_conf 855727999999998898 No 6 >d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga maritima [TaxId: 2336]} Probab=61.84 E-value=4 Score=17.88 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=45.3 Q ss_pred HHHC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE--CCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 7544-8998999999999999999889860776869987--355307888976888888889980765899999999997 Q gi|254780690|r 233 IKQS-YGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT--NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 (354) Q Consensus 233 ~K~~-EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvit--NPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~ 309 (354) +|-. +|||+|=..++. .+=|.||- |||. + +....-...||+.|-. T Consensus 64 ~k~~~gg~p~i~d~I~~--------------geI~lVIn~~d~~~---------~---------~~~~~D~~~IRR~a~~ 111 (156) T d1vmda_ 64 KSGPLGGDQQIGAMIAE--------------GKIDVLIFFWDPLE---------P---------QAHDVDVKALIRIATV 111 (156) T ss_dssp SCGGGTHHHHHHHHHHT--------------TSCCEEEEECCSSS---------C---------CTTSCCHHHHHHHHHH T ss_pred EECCCCCCCCHHHHHHC--------------CCCCEEEECCCCCC---------C---------CCCCCHHHHHHHHHHH T ss_conf 85787889889999976--------------99878997778777---------7---------6554249999999998 Q ss_pred CCCCEEECHHHHHHHHHHCCCC Q ss_conf 3997886889999999728898 Q gi|254780690|r 310 HNIPIFEEPSLARSLFKQVPIN 331 (354) Q Consensus 310 ~~Vpive~~~LAR~Ly~~~~ig 331 (354) ++||.+-|..-|+++-...+-+ T Consensus 112 ~~IP~~Ttl~~A~a~i~ai~~~ 133 (156) T d1vmda_ 112 YNIPVAITRSTADFLISSPLMN 133 (156) T ss_dssp TTCCEESSHHHHHHHHHSGGGG T ss_pred HCCCEECCHHHHHHHHHHHHHC T ss_conf 3984242799999999879846 No 7 >d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]} Probab=61.23 E-value=4.2 Score=17.68 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=25.5 Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998999999754489989999999999999998 Q gi|254780690|r 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354) Q Consensus 224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354) ++++=+|=.-=|+||||.||.+||+.-+++..- T Consensus 65 L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~ 97 (111) T d1uk5a_ 65 LTKELLALDSVDPEGRADVRQARRDGVRKVQTI 97 (111) T ss_dssp HHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999866746588799999999999999999 No 8 >d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]} Probab=60.36 E-value=3.4 Score=18.39 Aligned_cols=40 Identities=8% Similarity=0.078 Sum_probs=28.6 Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99998406998999999754489989999999999999998 Q gi|254780690|r 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354) Q Consensus 216 ~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354) |.+...+ ++++=+|=.-=|++|||.+|.+||+.-+++.+- T Consensus 34 ~~~L~E~-L~~~llkLD~Ie~~G~~~vR~~RK~~vk~vq~~ 73 (81) T d1m7ka_ 34 YWLLEEM-LTKELLELDSVETGGQDSVRQARKEAVCKIQAI 73 (81) T ss_dssp HHHHHHH-HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHH-HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999-999999848845689599999999999999999 No 9 >d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]} Probab=60.04 E-value=3.5 Score=18.32 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=24.6 Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998999999754489989999999999999998 Q gi|254780690|r 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 (354) Q Consensus 224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~ 256 (354) ++++=+|=.-=|++|||.||..||+.-+++..- T Consensus 53 L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~ 85 (99) T d1ugoa_ 53 LTKQLFEIDSVDTEGKGDIQQARKRAAQETERL 85 (99) T ss_dssp HHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999866725478799999999999999999 No 10 >d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=54.28 E-value=5.4 Score=16.81 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=44.6 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCC Q ss_conf 75448998999999999999999889860776869987355307888976888888889980765899999999997399 Q gi|254780690|r 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNI 312 (354) Q Consensus 233 ~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~V 312 (354) .|..||.|++-..+++ .+=|.||.=|. +. +...-..+||+.|-+++| T Consensus 57 ~ki~~~~p~i~d~i~~--------------gkidlVINt~~----------~~---------~~~~dg~~IRR~Av~~~I 103 (138) T d1a9xa2 57 NKVHEGRPHIQDRIKN--------------GEYTYIINTTS----------GR---------RAIEDSRVIRRSALQYKV 103 (138) T ss_dssp BCTTTCSSBHHHHHHH--------------TCCSEEEECCC----------SH---------HHHHHTHHHHHHHHHTTC T ss_pred CCCCCCCCCHHHHHHC--------------CCEEEEEECCC----------CC---------CCCCCHHHHHHHHHHCCC T ss_conf 1346665207678744--------------97679998899----------97---------545248999999997499 Q ss_pred CEEECHHHHHHHHHHCCCCC Q ss_conf 78868899999997288989 Q gi|254780690|r 313 PIFEEPSLARSLFKQVPINS 332 (354) Q Consensus 313 pive~~~LAR~Ly~~~~ig~ 332 (354) |.+-+...|+++-...+-.. T Consensus 104 P~~T~l~~A~a~i~al~~~~ 123 (138) T d1a9xa2 104 HYDTTLNGGFATAMALNADA 123 (138) T ss_dssp EEESSHHHHHHHHHHHTCCT T ss_pred CEEECHHHHHHHHHHHHHCC T ss_conf 99965999999999998479 No 11 >d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]} Probab=51.19 E-value=6.2 Score=16.34 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=26.0 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEECH Q ss_conf 88889980765899999999997399788688 Q gi|254780690|r 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 (354) Q Consensus 287 ~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~ 318 (354) +-|.--..|.-++|.+|.+.+.+.|+++..+. T Consensus 89 ~~~~~~~~g~~eLA~~i~~~~~~~g~d~~~~~ 120 (298) T d1b4ub_ 89 PRPVPDVKGHPDLAWHIAQSLILDEFDMTIMN 120 (298) T ss_dssp BCSSCCEECCHHHHHHHHHHHHHTTCCCEEES T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 66788889889999999999998799720156 No 12 >d1ko7a1 c.98.2.1 (A:1-129) HPr kinase/phoshatase HprK N-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Probab=47.63 E-value=5 Score=17.08 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=22.6 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEECH Q ss_conf 88889980765899999999997399788688 Q gi|254780690|r 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 (354) Q Consensus 287 ~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~ 318 (354) .+=+|+..|. ..-..+++.|+++++|++..+ T Consensus 81 ~~~lIit~g~-~~p~~li~~a~~~~iPll~t~ 111 (129) T d1ko7a1 81 TPAIIVTRDL-EPPEELIEAAKEHETPLITSK 111 (129) T ss_dssp CCCEEECTTC-CCCHHHHHHHHHTTCCEEECC T ss_pred CCEEEEECCC-CCCHHHHHHHHHHCCEEEEEC T ss_conf 8689997999-998999999998098499957 No 13 >d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Probab=44.26 E-value=4.1 Score=17.79 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=22.5 Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEECHH Q ss_conf 88899807658999999999973997886889 Q gi|254780690|r 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 (354) Q Consensus 288 aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~ 319 (354) .=+|+++|... -..+.+.|++++||++..+- T Consensus 85 PciIvt~~~~~-p~~l~~~a~~~~vPll~T~~ 115 (132) T d1knxa1 85 PAIILTKSFTD-PTVLLQVNQTYQVPILKTDF 115 (132) T ss_dssp SCEEEETTTCC-CHHHHHHGGGTCCCEEEESS T ss_pred CEEEEECCCCC-CHHHHHHHHHCCCCEEEECC T ss_conf 88999797999-99999999982996898186 No 14 >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Probab=42.53 E-value=8.2 Score=15.38 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=27.3 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHH Q ss_conf 888889980765899999999997399788688999 Q gi|254780690|r 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321 (354) Q Consensus 286 ~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LA 321 (354) ..-|++.+--.+......|+.-+++|||+..++.=| T Consensus 112 ~~kpv~~~~~~~~~~~~~~~~l~~~Gip~f~~pe~a 147 (163) T d2csua3 112 NEKPVLAMFMAGYVSEKAKELLEKNGIPTYERPEDV 147 (163) T ss_dssp CCCCEEEEEECTTTTHHHHHHHHTTTCCEESSHHHH T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHH T ss_conf 997279998999876999999998899867999999 No 15 >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} Probab=39.93 E-value=7.3 Score=15.79 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=37.1 Q ss_pred HHHHHHHHHHHHCCCCEE-----------------ECHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 899999999997399788-----------------6889999999728---89894898999999999999973 Q gi|254780690|r 298 LIAKKMRKIAYEHNIPIF-----------------EEPSLARSLFKQV---PINSAIPPVFYKAVAQLIYKIYH 351 (354) Q Consensus 298 ~~A~~Ir~~A~~~~Vpiv-----------------e~~~LAR~Ly~~~---~ig~~Ip~~~y~aVA~il~~v~~ 351 (354) .-...+.+.-+++||+.- .+-|=|..+++++ +++..+..+--+-|++++..+.+ T Consensus 301 ~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374) T d1o69a_ 301 PKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374) T ss_dssp HHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 10999999999879987873854342966534787899899999839898969887799999999999999979 No 16 >d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=37.88 E-value=9.6 Score=14.86 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=19.9 Q ss_pred CCCEEEEEC-CCH--HH-HHHHHHHHHCCCCEEECH Q ss_conf 888899807-658--99-999999997399788688 Q gi|254780690|r 287 DAPVLVAKG-QNL--IA-KKMRKIAYEHNIPIFEEP 318 (354) Q Consensus 287 ~aP~vvaKG-~~~--~A-~~Ir~~A~~~~Vpive~~ 318 (354) .=|++++=+ ... .| ..+++.|+..++||+... T Consensus 11 krPvii~G~G~~~~~~a~~~l~~lae~~g~Pv~tt~ 46 (171) T d1t9ba1 11 KKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTL 46 (171) T ss_dssp SSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECG T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEECC T ss_conf 994999895732200589999999995697554011 No 17 >d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=37.46 E-value=8.5 Score=15.27 Aligned_cols=25 Identities=4% Similarity=0.137 Sum_probs=15.1 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2012667999999999999999999 Q gi|254780690|r 138 RIYSINNLVNFMKSFVKIILVGTII 162 (354) Q Consensus 138 riFS~k~lvel~KsllKv~li~~v~ 162 (354) .-|+.+-+.+-++++.|+.-++-++ T Consensus 31 G~Ftl~Df~~Q~~~i~kmG~l~~im 55 (138) T d1qzxa2 31 GKLTLRDVYAQIIALRKMGPLSKVL 55 (138) T ss_dssp --CCCSTTHHHHHHHHHSCSSHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHH T ss_conf 9744999999999998367588999 No 18 >d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium butyricum [TaxId: 1492]} Probab=37.13 E-value=6.3 Score=16.29 Aligned_cols=24 Identities=4% Similarity=-0.070 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 9766799999998406998999999 Q gi|254780690|r 208 VLDIGWSYHQWYSKLKMSKQEIKDE 232 (354) Q Consensus 208 ~iD~~~qr~~~~k~lkMskqEvK~E 232 (354) =+|-.+.-| |.++.++|++|.++= T Consensus 286 RlDq~L~Py-ye~D~~it~eeA~EL 309 (786) T d1r9da_ 286 RFDQYMYPY-YENDKNITDKFAQEL 309 (786) T ss_dssp SHHHHHHHH-HHHCSSCCHHHHHHH T ss_pred CHHHHHHHH-HHHCCCCCHHHHHHH T ss_conf 168888999-984278899999999 No 19 >d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]} Probab=35.22 E-value=10 Score=14.56 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.6 Q ss_pred CCHHHHHHHHHH Q ss_conf 998999999754 Q gi|254780690|r 224 MSKQEIKDEIKQ 235 (354) Q Consensus 224 MskqEvK~E~K~ 235 (354) |||+|++++.++ T Consensus 1 m~K~~lRk~~r~ 12 (175) T d1wkca_ 1 MTKAELRRRARA 12 (175) T ss_dssp CCHHHHHHHHHH T ss_pred CCHHHHHHHHHH T ss_conf 988999999999 No 20 >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Probab=34.42 E-value=11 Score=14.46 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=27.4 Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEECHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 889980765899999999997399788688999-9999728898948989999999999999 Q gi|254780690|r 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA-RSLFKQVPINSAIPPVFYKAVAQLIYKI 349 (354) Q Consensus 289 P~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LA-R~Ly~~~~ig~~Ip~~~y~aVA~il~~v 349 (354) ..+..+-.+.-+....+.++++||-++--..-- .. |-.+-++ .|++..+...+.|+.+ T Consensus 314 ~f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~g-~iRis~~--~~~e~l~~al~rl~~~ 372 (375) T d1o4sa_ 314 FYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPG-FVRLSFA--TSIERLTEALDRIEDF 372 (375) T ss_dssp SEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTT-EEEEECC--SCHHHHHHHHHHHHHH T ss_pred EEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCC-EEEEEEC--CCHHHHHHHHHHHHHH T ss_conf 799997999979999999985999999761158999-6999972--8999999999999999 No 21 >d1scfa_ a.26.1.2 (A:) Stem cell factor, SCF {Human (Homo sapiens) [TaxId: 9606]} Probab=33.13 E-value=10 Score=14.70 Aligned_cols=16 Identities=19% Similarity=0.249 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999720001 Q gi|254780690|r 56 YSVTSDLHVLLASATQ 71 (354) Q Consensus 56 ~~l~~~~~~~~~~~~~ 71 (354) ..+...+..++..+++ T Consensus 40 ~~l~~SL~~L~~KF~n 55 (131) T d1scfa_ 40 VQLSDSLTDLLDKFSN 55 (131) T ss_dssp HHHHHHHHHHHTTSCS T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999731 No 22 >d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Probab=31.18 E-value=9.9 Score=14.74 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=17.7 Q ss_pred HHHHHHHHHHCCCCEEECHH Q ss_conf 99999999973997886889 Q gi|254780690|r 300 AKKMRKIAYEHNIPIFEEPS 319 (354) Q Consensus 300 A~~Ir~~A~~~~Vpive~~~ 319 (354) -..|+++|+++++|.++||. T Consensus 174 k~eI~~~a~~~~l~~~~D~s 193 (216) T d1wy5a1 174 RSEIEEYAKFKGLRWVEDET 193 (216) T ss_dssp HHHHHHHHHHTTCCCCCCGG T ss_pred HHHHHHHHHHCCCCEEECCC T ss_conf 99999999986994899908 No 23 >d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=30.55 E-value=9.2 Score=14.99 Aligned_cols=13 Identities=38% Similarity=0.600 Sum_probs=10.6 Q ss_pred HHHHHHHHCCCCE Q ss_conf 9999999739978 Q gi|254780690|r 302 KMRKIAYEHNIPI 314 (354) Q Consensus 302 ~Ir~~A~~~~Vpi 314 (354) .|+++|+++|+|| T Consensus 156 ei~~ya~~~~iPi 168 (168) T d1vl2a1 156 DLINYAMEKGIPI 168 (168) T ss_dssp HHHHHHHHHTCCC T ss_pred HHHHHHHHCCCCC T ss_conf 9999999849999 No 24 >d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=27.78 E-value=13 Score=13.76 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=8.2 Q ss_pred HHHHHHHHHCCCCE Q ss_conf 99999999739978 Q gi|254780690|r 301 KKMRKIAYEHNIPI 314 (354) Q Consensus 301 ~~Ir~~A~~~~Vpi 314 (354) ..|+++|++++||| T Consensus 151 ~ei~~ya~~~~iPv 164 (165) T d1j20a1 151 KEMIAYAEAHGIPV 164 (165) T ss_dssp HHHHHHHHHTTCCC T ss_pred HHHHHHHHHHCCCC T ss_conf 99999999928899 No 25 >d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=27.52 E-value=1.8 Score=20.67 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=18.2 Q ss_pred CCCCEEEECC---CCEEEEEEECCCCCCCCEE Q ss_conf 7686998735---5307888976888888889 Q gi|254780690|r 263 SRATIIITNP---THYALALRYIQTENDAPVL 291 (354) Q Consensus 263 ~~A~vvitNP---TH~AVAL~Y~~~~~~aP~v 291 (354) .++|.+|-|| ||+++||+=--.....|.| T Consensus 65 ~~~dgiIiNPga~ThtS~al~Dal~~~~~P~i 96 (144) T d1h05a_ 65 DAAEPVILNAGGLTHTSVALRDACAELSAPLI 96 (144) T ss_dssp HHTCCEEEECGGGGGTCHHHHHHHHTCCSCEE T ss_pred HCCCCCEECCCCCEEEEEEHHHHHHHCCCCEE T ss_conf 51476154462104532015989987289779 No 26 >d1uqra_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Actinobacillus pleuropneumoniae [TaxId: 715]} Probab=26.08 E-value=3.4 Score=18.40 Aligned_cols=67 Identities=27% Similarity=0.344 Sum_probs=39.2 Q ss_pred HCCCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCCCCCC Q ss_conf 077686998735---53078889768888888899807658999999999973997886---889999999728898948 Q gi|254780690|r 261 ATSRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPINSAI 334 (354) Q Consensus 261 ~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~ig~~I 334 (354) +-.++|-+|-|| ||+++||+ +--+..++|++| +.+-||.=|+..-+=.++ T Consensus 64 a~~~~dgiIiNpga~ThtS~al~------------------------Dal~~~~~P~iEVHlSNi~~RE~fR~~S~i~~~ 119 (146) T d1uqra_ 64 AFQNTDFIIINPGAFTHTSVAIR------------------------DALLAVSIPFIEVHLSNVHAREPFRHHSYLSDV 119 (146) T ss_dssp TTTTCCEEEEECTTHHHHCHHHH------------------------HHHHHHTCCEEEEESSCGGGSCGGGSCCSSGGG T ss_pred HHCCCCEEEECCCCEEEEHHHHH------------------------HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 75276625753654055203378------------------------899872998899980684002554555544600 Q ss_pred ---------CHHHHHHHHHHHHHHHH Q ss_conf ---------98999999999999973 Q gi|254780690|r 335 ---------PPVFYKAVAQLIYKIYH 351 (354) Q Consensus 335 ---------p~~~y~aVA~il~~v~~ 351 (354) +..+..|+-.++..+.| T Consensus 120 ~~g~i~G~G~~~Y~~Al~~l~~~l~k 145 (146) T d1uqra_ 120 AKGVICGLGAKGYDYALDFAISELQK 145 (146) T ss_dssp SSEEEESSTTHHHHHHHHHHHHHHHT T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHH T ss_conf 30899559879999999999999740 No 27 >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Probab=25.61 E-value=9.8 Score=14.78 Aligned_cols=122 Identities=9% Similarity=0.005 Sum_probs=54.7 Q ss_pred HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECC-CH Q ss_conf 84069989999997544899899999999999999988986077686998735530788897688888888998076-58 Q gi|254780690|r 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ-NL 298 (354) Q Consensus 220 k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~-~~ 298 (354) -+.|||--.-.--.-|.+.=+++-.+||+.+....+. +.+.+. +..++...-..-.| ..-+..+-+.. +. T Consensus 232 ~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~--L~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 302 (376) T d1mdoa_ 232 YKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQA--MADLPF---QPLSLPSWEHIHAW----HLFIIRVDEARCGI 302 (376) T ss_dssp CBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--HHTSSC---EECCCCSSCEECCC----SCEEEECCHHHHSS T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCC---CCCCCCCCCCCCCC----CCCCCCCCCCCCHH T ss_conf 3534401456665543333357999986653455431--146543---32212344445443----32222220002133 Q ss_pred HHHHHHHHHHHCCCCEE------------------ECHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999999997399788------------------688999999972---88989489899999999999997 Q gi|254780690|r 299 IAKKMRKIAYEHNIPIF------------------EEPSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIY 350 (354) Q Consensus 299 ~A~~Ir~~A~~~~Vpiv------------------e~~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~ 350 (354) --..+.+.=+++||++- .+-|-|..++++ .++...+..+-.+-|++.|..++ T Consensus 303 ~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376) T d1mdoa_ 303 TRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376) T ss_dssp CHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHH T ss_conf 3999999999879984657853230899895288789879999985979844899999999999999999972 No 28 >d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Probab=24.54 E-value=10 Score=14.69 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=28.0 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCC Q ss_conf 8998076589999999999739978868899999997288 Q gi|254780690|r 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 (354) Q Consensus 290 ~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ 329 (354) ++|--+. .-..+.+.|...|+|+|.--++=++|-..-. T Consensus 53 VvvTD~s--cp~~vl~~a~~~~ipvVS~EWVIQsLI~G~~ 90 (106) T d1kzyc2 53 VVVTDPS--CPASVLKCAEALQLPVVSQEWVIQCLIVGER 90 (106) T ss_dssp EEEECTT--CCHHHHHHHHHHTCCEECHHHHHHHHHHTSC T ss_pred EEEECCC--CCHHHHHHHHHCCCCEEEHHHHHHHHHCCCC T ss_conf 8996798--9899999988719967668898999970675 No 29 >d1gqoa_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Bacillus subtilis [TaxId: 1423]} Probab=24.19 E-value=4 Score=17.85 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=16.2 Q ss_pred HCCCCCEEEECC---CCEEEEEE Q ss_conf 077686998735---53078889 Q gi|254780690|r 261 ATSRATIIITNP---THYALALR 280 (354) Q Consensus 261 ~V~~A~vvitNP---TH~AVAL~ 280 (354) +..++|-+|-|| ||+++||+ T Consensus 63 ~~~~~dgiIiNPga~thtS~al~ 85 (141) T d1gqoa_ 63 AEEQYSGIVLNPGALSHYSYAIR 85 (141) T ss_dssp HTTTCSEEEEECGGGGGTCHHHH T ss_pred HHHCCCEEEECCHHHHHHHHHHH T ss_conf 53223323545346644566679 No 30 >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} Probab=24.05 E-value=13 Score=13.67 Aligned_cols=123 Identities=11% Similarity=0.144 Sum_probs=56.7 Q ss_pred HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHH Q ss_conf 84069989999997544899899999999999999988986077686998735530788897688888888998076589 Q gi|254780690|r 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 (354) Q Consensus 220 k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~ 299 (354) -+.|||--.---=..|.+-=++...+|+++.....+ .+.+.+ .+.+.+|.... ...--.-|+.+-.-...- T Consensus 226 ~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~~--~l~~~~--~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~ 296 (371) T d2fnua1 226 HNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDR--IFKDNP--YFTPLHPLLKD-----KSSNHLYPILMHQKFFTC 296 (371) T ss_dssp CBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHTTCS--SEEESGGGCSS-----CCCCSCEEEEECGGGGGG T ss_pred CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCCC--CCCCCCCCCCC-----CCCCCCCCCCCCCCCHHH T ss_conf 510033145555544432112103344433100012--122233--33332233333-----333333322222221067 Q ss_pred HHHHHHHHHHCCCCEE-------ECH-----------HHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999999997399788-------688-----------999999972---889894898999999999999973 Q gi|254780690|r 300 AKKMRKIAYEHNIPIF-------EEP-----------SLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYH 351 (354) Q Consensus 300 A~~Ir~~A~~~~Vpiv-------e~~-----------~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~ 351 (354) -..+.+.-+++||++- +.+ |=|..++++ .++...+..+--+-|++.+.-.++ T Consensus 297 r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~ 369 (371) T d2fnua1 297 KKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE 369 (371) T ss_dssp HHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999999998799841447651128988842666899899999849598968888899999999999999997 No 31 >d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]} Probab=23.45 E-value=16 Score=13.09 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=41.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9997667999999984069989999997544899899999999999999988986077 Q gi|254780690|r 206 LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATS 263 (354) Q Consensus 206 ia~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~ 263 (354) --++||.=+||+.....-.|-+|+=||-++.+=.|..|.. ++.|...++..-.|. T Consensus 14 aKIV~~MK~RHq~g~~hPLtLeEiLDEt~~~Di~~~~k~W---L~~EAL~nNPKi~v~ 68 (81) T d1d8ja_ 14 AKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQW---LMTEALVNNPKIEVI 68 (81) T ss_dssp HHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHH---HHTTHHHHCTTEEEC T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHH---HHHHHCCCCCCEEEC T ss_conf 9999999988715898874599999888634545789999---986030369950442 No 32 >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Probab=22.94 E-value=16 Score=13.01 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=29.2 Q ss_pred HHHHHHHHCCCCEEECHHHHHHHHHHCCCCC-----------CCC-----HHHHHHHHHHHHHHHHHC Q ss_conf 9999999739978868899999997288989-----------489-----899999999999997302 Q gi|254780690|r 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINS-----------AIP-----PVFYKAVAQLIYKIYHKK 353 (354) Q Consensus 302 ~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~-----------~Ip-----~~~y~aVA~il~~v~~lk 353 (354) ...+...+.||...+.-.+.- .+.-+-|+ .|| .+...-|++.|.+||+.| T Consensus 366 ~~~~l~~~~GIr~~~~g~~~~--~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~ 431 (456) T d1c7ga_ 366 LAASIYMETGVRSMERGIVSA--GRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456) T ss_dssp HHHHHHHHHSEECEEESHHHH--CBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTG T ss_pred HHHHHHHHHCEEECCCCCCCC--CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999972934424676453--457766676677544289755866689999999999999999645 No 33 >d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=22.86 E-value=16 Score=13.00 Aligned_cols=46 Identities=15% Similarity=0.348 Sum_probs=27.2 Q ss_pred HHHCCCHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC Q ss_conf 840699899999975448---------998999999999999999889860776869987355 Q gi|254780690|r 220 SKLKMSKQEIKDEIKQSY---------GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 (354) Q Consensus 220 k~lkMskqEvK~E~K~~E---------GdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPT 273 (354) +++|+|.+|+|++.|+.- =||.-++.-+-+.+.+-. ..|+++ .||. T Consensus 2 ~~~~~tP~e~r~~~~~~g~~~v~afqTrnp~Hr~He~i~~~a~~~-------~~~~ll-i~p~ 56 (221) T d1g8fa2 2 PGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE-------ANAKVL-IHPV 56 (221) T ss_dssp TTTCCCHHHHHHHHHHTTCCCEEEEEESSCCCHHHHHHHHHHHHH-------HTCEEE-EEEB T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH-------CCCCEE-EEEC T ss_conf 650279999999999759986889863899977899999999985-------489889-9402 No 34 >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Probab=22.09 E-value=17 Score=12.89 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=25.5 Q ss_pred HHHHHHHCCCCEEECHHHHHHH-HHHC---CCCC-----CCC-----HHHHHHHHHHHHHHHHH Q ss_conf 9999997399788688999999-9728---8989-----489-----89999999999999730 Q gi|254780690|r 303 MRKIAYEHNIPIFEEPSLARSL-FKQV---PINS-----AIP-----PVFYKAVAQLIYKIYHK 352 (354) Q Consensus 303 Ir~~A~~~~Vpive~~~LAR~L-y~~~---~ig~-----~Ip-----~~~y~aVA~il~~v~~l 352 (354) ..++..++||.-+++-...... .... .-+. .|| .|.-.-|++.|..||+. T Consensus 378 ~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~ 441 (467) T d2v1pa1 378 ACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467) T ss_dssp HHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999998197200055455344555677567876648996688889999999999999999997 No 35 >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Probab=21.95 E-value=17 Score=12.87 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=33.9 Q ss_pred CCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHH Q ss_conf 7686998735530788897688888888998076589999999999739978868899999 Q gi|254780690|r 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323 (354) Q Consensus 263 ~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~ 323 (354) .+.++||..|-+.-..-.-+ ..+ ..-.+.++.++++.|+++++||+----+-|. T Consensus 146 ~~~~~vvID~l~~l~~~~~~----~~~---~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~ 199 (277) T d1cr2a_ 146 LGCDVIILDHISIVVSASGE----SDE---RKMIDNLMTKLKGFAKSTGVVLVVICHLKNP 199 (277) T ss_dssp TCCSEEEEEEEEC-----------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-- T ss_pred CCCCEEEECCCCCCCCCCCC----CCH---HHHHHHHHHHHHHHHHHCCCCCEEECCCCCC T ss_conf 67625997054212034654----430---6778999999999765016552031035632 No 36 >d1gtza_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Streptomyces coelicolor [TaxId: 1902]} Probab=20.75 E-value=3.6 Score=18.23 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.2 Q ss_pred CCCEEEECC---CCEEEEEEE Q ss_conf 686998735---530788897 Q gi|254780690|r 264 RATIIITNP---THYALALRY 281 (354) Q Consensus 264 ~A~vvitNP---TH~AVAL~Y 281 (354) ++|-+|-|| ||++|||+= T Consensus 71 ~~~giIINpga~ThtSial~D 91 (149) T d1gtza_ 71 NHCGIVINPAAYSHTSVAILD 91 (149) T ss_dssp HCSEEEEECTTHHHHCHHHHH T ss_pred CCCEEEECCHHHHHHHHHHHH T ss_conf 042557353887776577899 No 37 >d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]} Probab=20.27 E-value=2.7 Score=19.19 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=38.2 Q ss_pred CCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCCCCCCC-- Q ss_conf 686998735---53078889768888888899807658999999999973997886---8899999997288989489-- Q gi|254780690|r 264 RATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPINSAIP-- 335 (354) Q Consensus 264 ~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~ig~~Ip-- 335 (354) ++|-+|-|| ||+++||+ +--+..++|+|| +.+-||.-|+..-+-.++. T Consensus 69 ~~dgiIINPga~ThtS~al~------------------------DAl~~~~~P~iEVHlSNi~~RE~fR~~S~is~~~~g 124 (158) T d2c4va1 69 DYEGIIINPGAFSHTSIAIA------------------------DAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGG 124 (158) T ss_dssp TEEEEEEECGGGGGTCHHHH------------------------HHHHHSSSCEEEEESSCTTSSCGGGSCCTTTTTSSE T ss_pred CCCEEEECCHHHEEEEEEHH------------------------HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCEE T ss_conf 95369964415324110118------------------------788753998899981686334555543425601238 Q ss_pred -------HHHHHHHHHHHHHHHH Q ss_conf -------8999999999999973 Q gi|254780690|r 336 -------PVFYKAVAQLIYKIYH 351 (354) Q Consensus 336 -------~~~y~aVA~il~~v~~ 351 (354) ..+..|+-.++..+-+ T Consensus 125 ~I~G~G~~gY~~Al~~l~~~l~~ 147 (158) T d2c4va1 125 VIMGFGPLGYNMALMAMVNILAE 147 (158) T ss_dssp EEESSTTHHHHHHHHHHHHHHHH T ss_pred EEECCCHHHHHHHHHHHHHHHHH T ss_conf 99638857899999999999985 Done!