Query         gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 354
No_of_seqs    156 out of 1618
Neff          7.0 
Searched_HMMs 13730
Date          Wed Jun  1 07:34:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780690.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 g3c01.1 d.367.1.1 (A:239-258,E 100.0 1.9E-33 1.4E-37  281.7  10.0  102  252-353     1-102 (108)
  2 g2vt1.1 d.367.1.1 (A:237-257,B 100.0 4.9E-33 3.6E-37  278.4   7.7  102  251-352     1-102 (102)
  3 g3bzy.1 d.367.1.1 (A:246-262,B 100.0 3.3E-32 2.4E-36  271.9  10.0   98  256-353     2-99  (100)
  4 d1wo8a1 c.24.1.2 (A:1-126) Met  77.2       1 7.5E-05   22.5   3.4   37  296-332    88-124 (126)
  5 d1b93a_ c.24.1.2 (A:) Methylgl  68.4     2.8  0.0002   19.1   3.8   64  234-329    66-131 (148)
  6 d1vmda_ c.24.1.2 (A:) Methylgl  61.8       4 0.00029   17.9   3.6   67  233-331    64-133 (156)
  7 d1uk5a_ a.7.7.1 (A:) BAG-famil  61.2     4.2 0.00031   17.7   3.7   33  224-256    65-97  (111)
  8 d1m7ka_ a.7.7.1 (A:) Silencer   60.4     3.4 0.00025   18.4   3.1   40  216-256    34-73  (81)
  9 d1ugoa_ a.7.7.1 (A:) BAG-famil  60.0     3.5 0.00025   18.3   3.1   33  224-256    53-85  (99)
 10 d1a9xa2 c.24.1.1 (A:936-1073)   54.3     5.4 0.00039   16.8   3.3   67  233-332    57-123 (138)
 11 d1b4ub_ c.56.6.1 (B:) LigB sub  51.2     6.2 0.00045   16.3   5.7   32  287-318    89-120 (298)
 12 d1ko7a1 c.98.2.1 (A:1-129) HPr  47.6       5 0.00037   17.1   2.2   31  287-318    81-111 (129)
 13 d1knxa1 c.98.2.1 (A:1-132) HPr  44.3     4.1  0.0003   17.8   1.4   31  288-319    85-115 (132)
 14 d2csua3 c.23.4.1 (A:291-453) A  42.5     8.2  0.0006   15.4   3.2   36  286-321   112-147 (163)
 15 d1o69a_ c.67.1.4 (A:) Aminotra  39.9     7.3 0.00053   15.8   2.1   54  298-351   301-374 (374)
 16 d1t9ba1 c.31.1.3 (A:290-460) A  37.9     9.6  0.0007   14.9   3.6   32  287-318    11-46  (171)
 17 d1qzxa2 a.36.1.1 (A:295-432) S  37.5     8.5 0.00062   15.3   2.1   25  138-162    31-55  (138)
 18 d1r9da_ c.7.1.1 (A:) Glycerol   37.1     6.3 0.00046   16.3   1.4   24  208-232   286-309 (786)
 19 d1wkca_ c.124.1.6 (A:) Hypothe  35.2      10 0.00076   14.6   2.3   12  224-235     1-12  (175)
 20 d1o4sa_ c.67.1.1 (A:) Aspartat  34.4      11 0.00078   14.5   3.9   58  289-349   314-372 (375)
 21 d1scfa_ a.26.1.2 (A:) Stem cel  33.1      10 0.00073   14.7   1.9   16   56-71     40-55  (131)
 22 d1wy5a1 c.26.2.5 (A:1-216) Til  31.2     9.9 0.00072   14.7   1.6   20  300-319   174-193 (216)
 23 d1vl2a1 c.26.2.1 (A:2-169) Arg  30.5     9.2 0.00067   15.0   1.4   13  302-314   156-168 (168)
 24 d1j20a1 c.26.2.1 (A:1-165) Arg  27.8      13 0.00096   13.8   1.8   14  301-314   151-164 (165)
 25 d1h05a_ c.23.13.1 (A:) Type II  27.5     1.8 0.00013   20.7  -2.7   29  263-291    65-96  (144)
 26 d1uqra_ c.23.13.1 (A:) Type II  26.1     3.4 0.00025   18.4  -1.5   67  261-351    64-145 (146)
 27 d1mdoa_ c.67.1.4 (A:) Aminotra  25.6     9.8 0.00071   14.8   0.8  122  220-350   232-375 (376)
 28 d1kzyc2 c.15.1.4 (C:1867-1972)  24.5      10 0.00073   14.7   0.7   38  290-329    53-90  (106)
 29 d1gqoa_ c.23.13.1 (A:) Type II  24.2       4 0.00029   17.8  -1.4   20  261-280    63-85  (141)
 30 d2fnua1 c.67.1.4 (A:2-372) Spo  24.0      13 0.00098   13.7   1.3  123  220-351   226-369 (371)
 31 d1d8ja_ a.4.5.18 (A:) The cent  23.4      16  0.0012   13.1   4.6   55  206-263    14-68  (81)
 32 d1c7ga_ c.67.1.2 (A:) Tyrosine  22.9      16  0.0012   13.0   2.2   50  302-353   366-431 (456)
 33 d1g8fa2 c.26.1.5 (A:169-389) A  22.9      16  0.0012   13.0   3.4   46  220-273     2-56  (221)
 34 d2v1pa1 c.67.1.2 (A:5-471) Try  22.1      17  0.0012   12.9   2.4   50  303-352   378-441 (467)
 35 d1cr2a_ c.37.1.11 (A:) Gene 4   21.9      17  0.0012   12.9   4.0   54  263-323   146-199 (277)
 36 d1gtza_ c.23.13.1 (A:) Type II  20.8     3.6 0.00026   18.2  -2.2   18  264-281    71-91  (149)
 37 d2c4va1 c.23.13.1 (A:1-158) Ty  20.3     2.7  0.0002   19.2  -2.9   64  264-351    69-147 (158)

No 1  
>g3c01.1 d.367.1.1 (A:239-258,E:259-346) Surface presentation of antigens protein SpaS {Salmonella typhimurium [TaxId: 90371]}
Probab=100.00  E-value=1.9e-33  Score=281.66  Aligned_cols=102  Identities=20%  Similarity=0.265  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCC
Q ss_conf             99998898607768699873553078889768888888899807658999999999973997886889999999728898
Q gi|254780690|r  252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN  331 (354)
Q Consensus       252 e~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig  331 (354)
                      |+++++|+++|++|||||||||||||||+||+++++||+|+|||.|.+|.+||++|++|||||+|||+|||+||+++++|
T Consensus         1 Ei~~~~~~~~v~~a~vvi~NPTh~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A~~~gIPi~e~~~LAr~L~~~~~ig   80 (108)
T g3c01.1           1 EILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRY   80 (108)
T ss_dssp             CCSCHHHHHHHHTCSEEEECCCCEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTT
T ss_pred             CCCCHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCC
T ss_conf             91105568418878889978871699999778889898899985758999999999985995897899999999728789


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             9489899999999999997302
Q gi|254780690|r  332 SAIPPVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       332 ~~Ip~~~y~aVA~il~~v~~lk  353 (354)
                      ++||+++|++||+||+|||+++
T Consensus        81 ~~IP~ely~aVA~IL~~v~~l~  102 (108)
T g3c01.1          81 DLVSLEEIDEVLRLLVWLEEVE  102 (108)
T ss_dssp             CBCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8389999999999999999988


No 2  
>g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}
Probab=99.97  E-value=4.9e-33  Score=278.42  Aligned_cols=102  Identities=24%  Similarity=0.283  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCC
Q ss_conf             99999889860776869987355307888976888888889980765899999999997399788688999999972889
Q gi|254780690|r  251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI  330 (354)
Q Consensus       251 re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~i  330 (354)
                      +|+++++++++|++|||||||||||||||+||+++++||+|+|||.|.+|.+||++|++|||||+||++|||+||+++++
T Consensus         1 ~ei~~~~~~~~v~~a~vvv~NPTh~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A~e~gIPi~ed~~LAr~L~~~~~i   80 (102)
T g2vt1.1           1 IEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTK   80 (102)
T ss_dssp             CCCSCHHHHHHHHTCSEEEECCCSEEEEEECCTTTCSSCEEEEEEEHHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCC
T ss_conf             92012558740877888997897479999976888989889998577899999999998499699899999999974888


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             8948989999999999999730
Q gi|254780690|r  331 NSAIPPVFYKAVAQLIYKIYHK  352 (354)
Q Consensus       331 g~~Ip~~~y~aVA~il~~v~~l  352 (354)
                      |++||+|+|++||+||+|||++
T Consensus        81 g~~IP~ely~aVAeIL~~v~~l  102 (102)
T g2vt1.1          81 YSFVDFEHLDEVLRLIVWLEQV  102 (102)
T ss_dssp             SEECCTTTHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHC
T ss_conf             9958999999999999999759


No 3  
>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=3.3e-32  Score=271.90  Aligned_cols=98  Identities=32%  Similarity=0.460  Sum_probs=95.8

Q ss_pred             HHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCCC
Q ss_conf             88986077686998735530788897688888888998076589999999999739978868899999997288989489
Q gi|254780690|r  256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP  335 (354)
Q Consensus       256 ~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~~Ip  335 (354)
                      ++|+++|++|||||||||||||||+||+++++||+|+|||.|.+|++||++|++|||||+||++|||+||+++++|++||
T Consensus         2 g~~~~~v~~a~vvi~NPTh~AVAL~Yd~~~~~aP~VvAkG~g~~A~~I~~~A~e~gIPi~~d~~LAr~Ly~~~~ig~~IP   81 (100)
T g3bzy.1           2 GSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKGQYIT   81 (100)
T ss_dssp             CHHHHHHHHCSEEEECCCCEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCTTCBCC
T ss_pred             CCHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCC
T ss_conf             14444288788899789779999998689898988999718678999999999849978978999999997688989669


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             899999999999997302
Q gi|254780690|r  336 PVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       336 ~~~y~aVA~il~~v~~lk  353 (354)
                      +++|++||+||+|+|++.
T Consensus        82 ~ely~aVAeIL~~v~~ld   99 (100)
T g3bzy.1          82 EDFFEPVAQLIRIAIDLD   99 (100)
T ss_dssp             GGGHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999632


No 4  
>d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus thermophilus [TaxId: 274]}
Probab=77.16  E-value=1  Score=22.51  Aligned_cols=37  Identities=11%  Similarity=0.209  Sum_probs=30.9

Q ss_pred             CCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCC
Q ss_conf             6589999999999739978868899999997288989
Q gi|254780690|r  296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS  332 (354)
Q Consensus       296 ~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~  332 (354)
                      ...--..||+.|-+++||++-|...|+++-...+-|.
T Consensus        88 ~~~D~~~iRR~a~~~~IP~~Tn~~~A~a~v~al~~g~  124 (126)
T d1wo8a1          88 HEPDVQALMRVCNVHGVPLATNLVAAEALIAWIRKGT  124 (126)
T ss_dssp             THHHHHHHHHHHHHTTCCEECSHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCC
T ss_conf             5102899999999739998967999999999998449


No 5  
>d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia coli [TaxId: 562]}
Probab=68.37  E-value=2.8  Score=19.13  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=45.1

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE--CCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf             5448998999999999999999889860776869987--35530788897688888888998076589999999999739
Q gi|254780690|r  234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT--NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN  311 (354)
Q Consensus       234 K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvit--NPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~  311 (354)
                      +..+|||+|=..++.              .+=|.||-  ||++                  .++...-...||+.|-.++
T Consensus        66 ~~~gg~p~I~d~I~~--------------g~I~lVIn~~d~~~------------------~~~~~~D~~~IRR~a~~~~  113 (148)
T d1b93a_          66 GPMGGDQQVGALISE--------------GKIDVLIFFWDPLN------------------AVPHDPDVKALLRLATVWN  113 (148)
T ss_dssp             GGGTHHHHHHHHHHT--------------TCCCEEEEECCTTS------------------CCTTHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHC--------------CCCCEEEECCCCCC------------------CCCCCCCHHHHHHHHHHCC
T ss_conf             788778689999984--------------98549997567767------------------7767551999999999709


Q ss_pred             CCEEECHHHHHHHHHHCC
Q ss_conf             978868899999997288
Q gi|254780690|r  312 IPIFEEPSLARSLFKQVP  329 (354)
Q Consensus       312 Vpive~~~LAR~Ly~~~~  329 (354)
                      ||++-|...|+++-+...
T Consensus       114 IP~~Tn~~tA~a~l~a~~  131 (148)
T d1b93a_         114 IPVATNVATADFIIQSPH  131 (148)
T ss_dssp             CCEESSHHHHHHHHTSGG
T ss_pred             CCEEECHHHHHHHHHHHH
T ss_conf             855727999999998898


No 6  
>d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga maritima [TaxId: 2336]}
Probab=61.84  E-value=4  Score=17.88  Aligned_cols=67  Identities=21%  Similarity=0.240  Sum_probs=45.3

Q ss_pred             HHHC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE--CCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             7544-8998999999999999999889860776869987--355307888976888888889980765899999999997
Q gi|254780690|r  233 IKQS-YGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT--NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE  309 (354)
Q Consensus       233 ~K~~-EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvit--NPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~  309 (354)
                      +|-. +|||+|=..++.              .+=|.||-  |||.         +         +....-...||+.|-.
T Consensus        64 ~k~~~gg~p~i~d~I~~--------------geI~lVIn~~d~~~---------~---------~~~~~D~~~IRR~a~~  111 (156)
T d1vmda_          64 KSGPLGGDQQIGAMIAE--------------GKIDVLIFFWDPLE---------P---------QAHDVDVKALIRIATV  111 (156)
T ss_dssp             SCGGGTHHHHHHHHHHT--------------TSCCEEEEECCSSS---------C---------CTTSCCHHHHHHHHHH
T ss_pred             EECCCCCCCCHHHHHHC--------------CCCCEEEECCCCCC---------C---------CCCCCHHHHHHHHHHH
T ss_conf             85787889889999976--------------99878997778777---------7---------6554249999999998


Q ss_pred             CCCCEEECHHHHHHHHHHCCCC
Q ss_conf             3997886889999999728898
Q gi|254780690|r  310 HNIPIFEEPSLARSLFKQVPIN  331 (354)
Q Consensus       310 ~~Vpive~~~LAR~Ly~~~~ig  331 (354)
                      ++||.+-|..-|+++-...+-+
T Consensus       112 ~~IP~~Ttl~~A~a~i~ai~~~  133 (156)
T d1vmda_         112 YNIPVAITRSTADFLISSPLMN  133 (156)
T ss_dssp             TTCCEESSHHHHHHHHHSGGGG
T ss_pred             HCCCEECCHHHHHHHHHHHHHC
T ss_conf             3984242799999999879846


No 7  
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.23  E-value=4.2  Score=17.68  Aligned_cols=33  Identities=9%  Similarity=0.110  Sum_probs=25.5

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998999999754489989999999999999998
Q gi|254780690|r  224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH  256 (354)
Q Consensus       224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~  256 (354)
                      ++++=+|=.-=|+||||.||.+||+.-+++..-
T Consensus        65 L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~   97 (111)
T d1uk5a_          65 LTKELLALDSVDPEGRADVRQARRDGVRKVQTI   97 (111)
T ss_dssp             HHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999866746588799999999999999999


No 8  
>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.36  E-value=3.4  Score=18.39  Aligned_cols=40  Identities=8%  Similarity=0.078  Sum_probs=28.6

Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99998406998999999754489989999999999999998
Q gi|254780690|r  216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH  256 (354)
Q Consensus       216 ~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~  256 (354)
                      |.+...+ ++++=+|=.-=|++|||.+|.+||+.-+++.+-
T Consensus        34 ~~~L~E~-L~~~llkLD~Ie~~G~~~vR~~RK~~vk~vq~~   73 (81)
T d1m7ka_          34 YWLLEEM-LTKELLELDSVETGGQDSVRQARKEAVCKIQAI   73 (81)
T ss_dssp             HHHHHHH-HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999-999999848845689599999999999999999


No 9  
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=60.04  E-value=3.5  Score=18.32  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=24.6

Q ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998999999754489989999999999999998
Q gi|254780690|r  224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH  256 (354)
Q Consensus       224 MskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~  256 (354)
                      ++++=+|=.-=|++|||.||..||+.-+++..-
T Consensus        53 L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~   85 (99)
T d1ugoa_          53 LTKQLFEIDSVDTEGKGDIQQARKRAAQETERL   85 (99)
T ss_dssp             HHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999866725478799999999999999999


No 10 
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=54.28  E-value=5.4  Score=16.81  Aligned_cols=67  Identities=16%  Similarity=0.116  Sum_probs=44.6

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf             75448998999999999999999889860776869987355307888976888888889980765899999999997399
Q gi|254780690|r  233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNI  312 (354)
Q Consensus       233 ~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~V  312 (354)
                      .|..||.|++-..+++              .+=|.||.=|.          +.         +...-..+||+.|-+++|
T Consensus        57 ~ki~~~~p~i~d~i~~--------------gkidlVINt~~----------~~---------~~~~dg~~IRR~Av~~~I  103 (138)
T d1a9xa2          57 NKVHEGRPHIQDRIKN--------------GEYTYIINTTS----------GR---------RAIEDSRVIRRSALQYKV  103 (138)
T ss_dssp             BCTTTCSSBHHHHHHH--------------TCCSEEEECCC----------SH---------HHHHHTHHHHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHC--------------CCEEEEEECCC----------CC---------CCCCCHHHHHHHHHHCCC
T ss_conf             1346665207678744--------------97679998899----------97---------545248999999997499


Q ss_pred             CEEECHHHHHHHHHHCCCCC
Q ss_conf             78868899999997288989
Q gi|254780690|r  313 PIFEEPSLARSLFKQVPINS  332 (354)
Q Consensus       313 pive~~~LAR~Ly~~~~ig~  332 (354)
                      |.+-+...|+++-...+-..
T Consensus       104 P~~T~l~~A~a~i~al~~~~  123 (138)
T d1a9xa2         104 HYDTTLNGGFATAMALNADA  123 (138)
T ss_dssp             EEESSHHHHHHHHHHHTCCT
T ss_pred             CEEECHHHHHHHHHHHHHCC
T ss_conf             99965999999999998479


No 11 
>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]}
Probab=51.19  E-value=6.2  Score=16.34  Aligned_cols=32  Identities=16%  Similarity=0.067  Sum_probs=26.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEECH
Q ss_conf             88889980765899999999997399788688
Q gi|254780690|r  287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP  318 (354)
Q Consensus       287 ~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~  318 (354)
                      +-|.--..|.-++|.+|.+.+.+.|+++..+.
T Consensus        89 ~~~~~~~~g~~eLA~~i~~~~~~~g~d~~~~~  120 (298)
T d1b4ub_          89 PRPVPDVKGHPDLAWHIAQSLILDEFDMTIMN  120 (298)
T ss_dssp             BCSSCCEECCHHHHHHHHHHHHHTTCCCEEES
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             66788889889999999999998799720156


No 12 
>d1ko7a1 c.98.2.1 (A:1-129) HPr kinase/phoshatase HprK N-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=47.63  E-value=5  Score=17.08  Aligned_cols=31  Identities=16%  Similarity=0.334  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEECH
Q ss_conf             88889980765899999999997399788688
Q gi|254780690|r  287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP  318 (354)
Q Consensus       287 ~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~  318 (354)
                      .+=+|+..|. ..-..+++.|+++++|++..+
T Consensus        81 ~~~lIit~g~-~~p~~li~~a~~~~iPll~t~  111 (129)
T d1ko7a1          81 TPAIIVTRDL-EPPEELIEAAKEHETPLITSK  111 (129)
T ss_dssp             CCCEEECTTC-CCCHHHHHHHHHTTCCEEECC
T ss_pred             CCEEEEECCC-CCCHHHHHHHHHHCCEEEEEC
T ss_conf             8689997999-998999999998098499957


No 13 
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=44.26  E-value=4.1  Score=17.79  Aligned_cols=31  Identities=10%  Similarity=0.228  Sum_probs=22.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEECHH
Q ss_conf             88899807658999999999973997886889
Q gi|254780690|r  288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS  319 (354)
Q Consensus       288 aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~  319 (354)
                      .=+|+++|... -..+.+.|++++||++..+-
T Consensus        85 PciIvt~~~~~-p~~l~~~a~~~~vPll~T~~  115 (132)
T d1knxa1          85 PAIILTKSFTD-PTVLLQVNQTYQVPILKTDF  115 (132)
T ss_dssp             SCEEEETTTCC-CHHHHHHGGGTCCCEEEESS
T ss_pred             CEEEEECCCCC-CHHHHHHHHHCCCCEEEECC
T ss_conf             88999797999-99999999982996898186


No 14 
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase  alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=42.53  E-value=8.2  Score=15.38  Aligned_cols=36  Identities=25%  Similarity=0.477  Sum_probs=27.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHH
Q ss_conf             888889980765899999999997399788688999
Q gi|254780690|r  286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA  321 (354)
Q Consensus       286 ~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LA  321 (354)
                      ..-|++.+--.+......|+.-+++|||+..++.=|
T Consensus       112 ~~kpv~~~~~~~~~~~~~~~~l~~~Gip~f~~pe~a  147 (163)
T d2csua3         112 NEKPVLAMFMAGYVSEKAKELLEKNGIPTYERPEDV  147 (163)
T ss_dssp             CCCCEEEEEECTTTTHHHHHHHHTTTCCEESSHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             997279998999876999999998899867999999


No 15 
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}
Probab=39.93  E-value=7.3  Score=15.79  Aligned_cols=54  Identities=15%  Similarity=0.066  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHCCCCEE-----------------ECHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             899999999997399788-----------------6889999999728---89894898999999999999973
Q gi|254780690|r  298 LIAKKMRKIAYEHNIPIF-----------------EEPSLARSLFKQV---PINSAIPPVFYKAVAQLIYKIYH  351 (354)
Q Consensus       298 ~~A~~Ir~~A~~~~Vpiv-----------------e~~~LAR~Ly~~~---~ig~~Ip~~~y~aVA~il~~v~~  351 (354)
                      .-...+.+.-+++||+.-                 .+-|=|..+++++   +++..+..+--+-|++++..+.+
T Consensus       301 ~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk  374 (374)
T d1o69a_         301 PKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  374 (374)
T ss_dssp             HHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             10999999999879987873854342966534787899899999839898969887799999999999999979


No 16 
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.88  E-value=9.6  Score=14.86  Aligned_cols=32  Identities=16%  Similarity=0.221  Sum_probs=19.9

Q ss_pred             CCCEEEEEC-CCH--HH-HHHHHHHHHCCCCEEECH
Q ss_conf             888899807-658--99-999999997399788688
Q gi|254780690|r  287 DAPVLVAKG-QNL--IA-KKMRKIAYEHNIPIFEEP  318 (354)
Q Consensus       287 ~aP~vvaKG-~~~--~A-~~Ir~~A~~~~Vpive~~  318 (354)
                      .=|++++=+ ...  .| ..+++.|+..++||+...
T Consensus        11 krPvii~G~G~~~~~~a~~~l~~lae~~g~Pv~tt~   46 (171)
T d1t9ba1          11 KKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTL   46 (171)
T ss_dssp             SSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf             994999895732200589999999995697554011


No 17 
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=37.46  E-value=8.5  Score=15.27  Aligned_cols=25  Identities=4%  Similarity=0.137  Sum_probs=15.1

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2012667999999999999999999
Q gi|254780690|r  138 RIYSINNLVNFMKSFVKIILVGTII  162 (354)
Q Consensus       138 riFS~k~lvel~KsllKv~li~~v~  162 (354)
                      .-|+.+-+.+-++++.|+.-++-++
T Consensus        31 G~Ftl~Df~~Q~~~i~kmG~l~~im   55 (138)
T d1qzxa2          31 GKLTLRDVYAQIIALRKMGPLSKVL   55 (138)
T ss_dssp             --CCCSTTHHHHHHHHHSCSSHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf             9744999999999998367588999


No 18 
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium butyricum [TaxId: 1492]}
Probab=37.13  E-value=6.3  Score=16.29  Aligned_cols=24  Identities=4%  Similarity=-0.070  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             9766799999998406998999999
Q gi|254780690|r  208 VLDIGWSYHQWYSKLKMSKQEIKDE  232 (354)
Q Consensus       208 ~iD~~~qr~~~~k~lkMskqEvK~E  232 (354)
                      =+|-.+.-| |.++.++|++|.++=
T Consensus       286 RlDq~L~Py-ye~D~~it~eeA~EL  309 (786)
T d1r9da_         286 RFDQYMYPY-YENDKNITDKFAQEL  309 (786)
T ss_dssp             SHHHHHHHH-HHHCSSCCHHHHHHH
T ss_pred             CHHHHHHHH-HHHCCCCCHHHHHHH
T ss_conf             168888999-984278899999999


No 19 
>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}
Probab=35.22  E-value=10  Score=14.56  Aligned_cols=12  Identities=25%  Similarity=0.548  Sum_probs=9.6

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             998999999754
Q gi|254780690|r  224 MSKQEIKDEIKQ  235 (354)
Q Consensus       224 MskqEvK~E~K~  235 (354)
                      |||+|++++.++
T Consensus         1 m~K~~lRk~~r~   12 (175)
T d1wkca_           1 MTKAELRRRARA   12 (175)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
T ss_conf             988999999999


No 20 
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}
Probab=34.42  E-value=11  Score=14.46  Aligned_cols=58  Identities=10%  Similarity=0.037  Sum_probs=27.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEECHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             889980765899999999997399788688999-9999728898948989999999999999
Q gi|254780690|r  289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA-RSLFKQVPINSAIPPVFYKAVAQLIYKI  349 (354)
Q Consensus       289 P~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LA-R~Ly~~~~ig~~Ip~~~y~aVA~il~~v  349 (354)
                      ..+..+-.+.-+....+.++++||-++--..-- .. |-.+-++  .|++..+...+.|+.+
T Consensus       314 ~f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~g-~iRis~~--~~~e~l~~al~rl~~~  372 (375)
T d1o4sa_         314 FYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPG-FVRLSFA--TSIERLTEALDRIEDF  372 (375)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTT-EEEEECC--SCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCC-EEEEEEC--CCHHHHHHHHHHHHHH
T ss_conf             799997999979999999985999999761158999-6999972--8999999999999999


No 21 
>d1scfa_ a.26.1.2 (A:) Stem cell factor, SCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.13  E-value=10  Score=14.70  Aligned_cols=16  Identities=19%  Similarity=0.249  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999720001
Q gi|254780690|r   56 YSVTSDLHVLLASATQ   71 (354)
Q Consensus        56 ~~l~~~~~~~~~~~~~   71 (354)
                      ..+...+..++..+++
T Consensus        40 ~~l~~SL~~L~~KF~n   55 (131)
T d1scfa_          40 VQLSDSLTDLLDKFSN   55 (131)
T ss_dssp             HHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999731


No 22 
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}
Probab=31.18  E-value=9.9  Score=14.74  Aligned_cols=20  Identities=10%  Similarity=0.152  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHCCCCEEECHH
Q ss_conf             99999999973997886889
Q gi|254780690|r  300 AKKMRKIAYEHNIPIFEEPS  319 (354)
Q Consensus       300 A~~Ir~~A~~~~Vpive~~~  319 (354)
                      -..|+++|+++++|.++||.
T Consensus       174 k~eI~~~a~~~~l~~~~D~s  193 (216)
T d1wy5a1         174 RSEIEEYAKFKGLRWVEDET  193 (216)
T ss_dssp             HHHHHHHHHHTTCCCCCCGG
T ss_pred             HHHHHHHHHHCCCCEEECCC
T ss_conf             99999999986994899908


No 23 
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=30.55  E-value=9.2  Score=14.99  Aligned_cols=13  Identities=38%  Similarity=0.600  Sum_probs=10.6

Q ss_pred             HHHHHHHHCCCCE
Q ss_conf             9999999739978
Q gi|254780690|r  302 KMRKIAYEHNIPI  314 (354)
Q Consensus       302 ~Ir~~A~~~~Vpi  314 (354)
                      .|+++|+++|+||
T Consensus       156 ei~~ya~~~~iPi  168 (168)
T d1vl2a1         156 DLINYAMEKGIPI  168 (168)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHHHHCCCCC
T ss_conf             9999999849999


No 24 
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=27.78  E-value=13  Score=13.76  Aligned_cols=14  Identities=43%  Similarity=0.619  Sum_probs=8.2

Q ss_pred             HHHHHHHHHCCCCE
Q ss_conf             99999999739978
Q gi|254780690|r  301 KKMRKIAYEHNIPI  314 (354)
Q Consensus       301 ~~Ir~~A~~~~Vpi  314 (354)
                      ..|+++|++++|||
T Consensus       151 ~ei~~ya~~~~iPv  164 (165)
T d1j20a1         151 KEMIAYAEAHGIPV  164 (165)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             99999999928899


No 25 
>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.52  E-value=1.8  Score=20.67  Aligned_cols=29  Identities=38%  Similarity=0.465  Sum_probs=18.2

Q ss_pred             CCCCEEEECC---CCEEEEEEECCCCCCCCEE
Q ss_conf             7686998735---5307888976888888889
Q gi|254780690|r  263 SRATIIITNP---THYALALRYIQTENDAPVL  291 (354)
Q Consensus       263 ~~A~vvitNP---TH~AVAL~Y~~~~~~aP~v  291 (354)
                      .++|.+|-||   ||+++||+=--.....|.|
T Consensus        65 ~~~dgiIiNPga~ThtS~al~Dal~~~~~P~i   96 (144)
T d1h05a_          65 DAAEPVILNAGGLTHTSVALRDACAELSAPLI   96 (144)
T ss_dssp             HHTCCEEEECGGGGGTCHHHHHHHHTCCSCEE
T ss_pred             HCCCCCEECCCCCEEEEEEHHHHHHHCCCCEE
T ss_conf             51476154462104532015989987289779


No 26 
>d1uqra_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Actinobacillus pleuropneumoniae [TaxId: 715]}
Probab=26.08  E-value=3.4  Score=18.40  Aligned_cols=67  Identities=27%  Similarity=0.344  Sum_probs=39.2

Q ss_pred             HCCCCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCCCCCC
Q ss_conf             077686998735---53078889768888888899807658999999999973997886---889999999728898948
Q gi|254780690|r  261 ATSRATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPINSAI  334 (354)
Q Consensus       261 ~V~~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~ig~~I  334 (354)
                      +-.++|-+|-||   ||+++||+                        +--+..++|++|   +.+-||.=|+..-+=.++
T Consensus        64 a~~~~dgiIiNpga~ThtS~al~------------------------Dal~~~~~P~iEVHlSNi~~RE~fR~~S~i~~~  119 (146)
T d1uqra_          64 AFQNTDFIIINPGAFTHTSVAIR------------------------DALLAVSIPFIEVHLSNVHAREPFRHHSYLSDV  119 (146)
T ss_dssp             TTTTCCEEEEECTTHHHHCHHHH------------------------HHHHHHTCCEEEEESSCGGGSCGGGSCCSSGGG
T ss_pred             HHCCCCEEEECCCCEEEEHHHHH------------------------HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             75276625753654055203378------------------------899872998899980684002554555544600


Q ss_pred             ---------CHHHHHHHHHHHHHHHH
Q ss_conf             ---------98999999999999973
Q gi|254780690|r  335 ---------PPVFYKAVAQLIYKIYH  351 (354)
Q Consensus       335 ---------p~~~y~aVA~il~~v~~  351 (354)
                               +..+..|+-.++..+.|
T Consensus       120 ~~g~i~G~G~~~Y~~Al~~l~~~l~k  145 (146)
T d1uqra_         120 AKGVICGLGAKGYDYALDFAISELQK  145 (146)
T ss_dssp             SSEEEESSTTHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             30899559879999999999999740


No 27 
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}
Probab=25.61  E-value=9.8  Score=14.78  Aligned_cols=122  Identities=9%  Similarity=0.005  Sum_probs=54.7

Q ss_pred             HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECC-CH
Q ss_conf             84069989999997544899899999999999999988986077686998735530788897688888888998076-58
Q gi|254780690|r  220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ-NL  298 (354)
Q Consensus       220 k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~-~~  298 (354)
                      -+.|||--.-.--.-|.+.=+++-.+||+.+....+.  +.+.+.   +..++...-..-.|    ..-+..+-+.. +.
T Consensus       232 ~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~--L~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  302 (376)
T d1mdoa_         232 YKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQA--MADLPF---QPLSLPSWEHIHAW----HLFIIRVDEARCGI  302 (376)
T ss_dssp             CBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--HHTSSC---EECCCCSSCEECCC----SCEEEECCHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCC---CCCCCCCCCCCCCC----CCCCCCCCCCCCHH
T ss_conf             3534401456665543333357999986653455431--146543---32212344445443----32222220002133


Q ss_pred             HHHHHHHHHHHCCCCEE------------------ECHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999997399788------------------688999999972---88989489899999999999997
Q gi|254780690|r  299 IAKKMRKIAYEHNIPIF------------------EEPSLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIY  350 (354)
Q Consensus       299 ~A~~Ir~~A~~~~Vpiv------------------e~~~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~  350 (354)
                      --..+.+.=+++||++-                  .+-|-|..++++   .++...+..+-.+-|++.|..++
T Consensus       303 ~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         303 TRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             CHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             3999999999879984657853230899895288789879999985979844899999999999999999972


No 28 
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.54  E-value=10  Score=14.69  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=28.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCC
Q ss_conf             8998076589999999999739978868899999997288
Q gi|254780690|r  290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP  329 (354)
Q Consensus       290 ~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~Ly~~~~  329 (354)
                      ++|--+.  .-..+.+.|...|+|+|.--++=++|-..-.
T Consensus        53 VvvTD~s--cp~~vl~~a~~~~ipvVS~EWVIQsLI~G~~   90 (106)
T d1kzyc2          53 VVVTDPS--CPASVLKCAEALQLPVVSQEWVIQCLIVGER   90 (106)
T ss_dssp             EEEECTT--CCHHHHHHHHHHTCCEECHHHHHHHHHHTSC
T ss_pred             EEEECCC--CCHHHHHHHHHCCCCEEEHHHHHHHHHCCCC
T ss_conf             8996798--9899999988719967668898999970675


No 29 
>d1gqoa_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Bacillus subtilis [TaxId: 1423]}
Probab=24.19  E-value=4  Score=17.85  Aligned_cols=20  Identities=40%  Similarity=0.705  Sum_probs=16.2

Q ss_pred             HCCCCCEEEECC---CCEEEEEE
Q ss_conf             077686998735---53078889
Q gi|254780690|r  261 ATSRATIIITNP---THYALALR  280 (354)
Q Consensus       261 ~V~~A~vvitNP---TH~AVAL~  280 (354)
                      +..++|-+|-||   ||+++||+
T Consensus        63 ~~~~~dgiIiNPga~thtS~al~   85 (141)
T d1gqoa_          63 AEEQYSGIVLNPGALSHYSYAIR   85 (141)
T ss_dssp             HTTTCSEEEEECGGGGGTCHHHH
T ss_pred             HHHCCCEEEECCHHHHHHHHHHH
T ss_conf             53223323545346644566679


No 30 
>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}
Probab=24.05  E-value=13  Score=13.67  Aligned_cols=123  Identities=11%  Similarity=0.144  Sum_probs=56.7

Q ss_pred             HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHH
Q ss_conf             84069989999997544899899999999999999988986077686998735530788897688888888998076589
Q gi|254780690|r  220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI  299 (354)
Q Consensus       220 k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~  299 (354)
                      -+.|||--.---=..|.+-=++...+|+++.....+  .+.+.+  .+.+.+|....     ...--.-|+.+-.-...-
T Consensus       226 ~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~~--~l~~~~--~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~  296 (371)
T d2fnua1         226 HNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDR--IFKDNP--YFTPLHPLLKD-----KSSNHLYPILMHQKFFTC  296 (371)
T ss_dssp             CBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHTTCS--SEEESGGGCSS-----CCCCSCEEEEECGGGGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCCC--CCCCCCCCCCC-----CCCCCCCCCCCCCCCHHH
T ss_conf             510033145555544432112103344433100012--122233--33332233333-----333333322222221067


Q ss_pred             HHHHHHHHHHCCCCEE-------ECH-----------HHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999997399788-------688-----------999999972---889894898999999999999973
Q gi|254780690|r  300 AKKMRKIAYEHNIPIF-------EEP-----------SLARSLFKQ---VPINSAIPPVFYKAVAQLIYKIYH  351 (354)
Q Consensus       300 A~~Ir~~A~~~~Vpiv-------e~~-----------~LAR~Ly~~---~~ig~~Ip~~~y~aVA~il~~v~~  351 (354)
                      -..+.+.-+++||++-       +.+           |=|..++++   .++...+..+--+-|++.+.-.++
T Consensus       297 r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~  369 (371)
T d2fnua1         297 KKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE  369 (371)
T ss_dssp             HHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999998799841447651128988842666899899999849598968888899999999999999997


No 31 
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.45  E-value=16  Score=13.09  Aligned_cols=55  Identities=13%  Similarity=0.010  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9997667999999984069989999997544899899999999999999988986077
Q gi|254780690|r  206 LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATS  263 (354)
Q Consensus       206 ia~iD~~~qr~~~~k~lkMskqEvK~E~K~~EGdP~iK~~~r~~~re~~~~~~~~~V~  263 (354)
                      --++||.=+||+.....-.|-+|+=||-++.+=.|..|..   ++.|...++..-.|.
T Consensus        14 aKIV~~MK~RHq~g~~hPLtLeEiLDEt~~~Di~~~~k~W---L~~EAL~nNPKi~v~   68 (81)
T d1d8ja_          14 AKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQW---LMTEALVNNPKIEVI   68 (81)
T ss_dssp             HHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHH---HHTTHHHHCTTEEEC
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHH---HHHHHCCCCCCEEEC
T ss_conf             9999999988715898874599999888634545789999---986030369950442


No 32 
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}
Probab=22.94  E-value=16  Score=13.01  Aligned_cols=50  Identities=22%  Similarity=0.244  Sum_probs=29.2

Q ss_pred             HHHHHHHHCCCCEEECHHHHHHHHHHCCCCC-----------CCC-----HHHHHHHHHHHHHHHHHC
Q ss_conf             9999999739978868899999997288989-----------489-----899999999999997302
Q gi|254780690|r  302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINS-----------AIP-----PVFYKAVAQLIYKIYHKK  353 (354)
Q Consensus       302 ~Ir~~A~~~~Vpive~~~LAR~Ly~~~~ig~-----------~Ip-----~~~y~aVA~il~~v~~lk  353 (354)
                      ...+...+.||...+.-.+.-  .+.-+-|+           .||     .+...-|++.|.+||+.|
T Consensus       366 ~~~~l~~~~GIr~~~~g~~~~--~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~  431 (456)
T d1c7ga_         366 LAASIYMETGVRSMERGIVSA--GRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK  431 (456)
T ss_dssp             HHHHHHHHHSEECEEESHHHH--CBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTG
T ss_pred             HHHHHHHHHCEEECCCCCCCC--CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999972934424676453--457766676677544289755866689999999999999999645


No 33 
>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.86  E-value=16  Score=13.00  Aligned_cols=46  Identities=15%  Similarity=0.348  Sum_probs=27.2

Q ss_pred             HHHCCCHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf             840699899999975448---------998999999999999999889860776869987355
Q gi|254780690|r  220 SKLKMSKQEIKDEIKQSY---------GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT  273 (354)
Q Consensus       220 k~lkMskqEvK~E~K~~E---------GdP~iK~~~r~~~re~~~~~~~~~V~~A~vvitNPT  273 (354)
                      +++|+|.+|+|++.|+.-         =||.-++.-+-+.+.+-.       ..|+++ .||.
T Consensus         2 ~~~~~tP~e~r~~~~~~g~~~v~afqTrnp~Hr~He~i~~~a~~~-------~~~~ll-i~p~   56 (221)
T d1g8fa2           2 PGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE-------ANAKVL-IHPV   56 (221)
T ss_dssp             TTTCCCHHHHHHHHHHTTCCCEEEEEESSCCCHHHHHHHHHHHHH-------HTCEEE-EEEB
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH-------CCCCEE-EEEC
T ss_conf             650279999999999759986889863899977899999999985-------489889-9402


No 34 
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}
Probab=22.09  E-value=17  Score=12.89  Aligned_cols=50  Identities=14%  Similarity=0.085  Sum_probs=25.5

Q ss_pred             HHHHHHHCCCCEEECHHHHHHH-HHHC---CCCC-----CCC-----HHHHHHHHHHHHHHHHH
Q ss_conf             9999997399788688999999-9728---8989-----489-----89999999999999730
Q gi|254780690|r  303 MRKIAYEHNIPIFEEPSLARSL-FKQV---PINS-----AIP-----PVFYKAVAQLIYKIYHK  352 (354)
Q Consensus       303 Ir~~A~~~~Vpive~~~LAR~L-y~~~---~ig~-----~Ip-----~~~y~aVA~il~~v~~l  352 (354)
                      ..++..++||.-+++-...... ....   .-+.     .||     .|.-.-|++.|..||+.
T Consensus       378 ~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~  441 (467)
T d2v1pa1         378 ACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             HHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999998197200055455344555677567876648996688889999999999999999997


No 35 
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=21.95  E-value=17  Score=12.87  Aligned_cols=54  Identities=11%  Similarity=0.063  Sum_probs=33.9

Q ss_pred             CCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHHHHH
Q ss_conf             7686998735530788897688888888998076589999999999739978868899999
Q gi|254780690|r  263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS  323 (354)
Q Consensus       263 ~~A~vvitNPTH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive~~~LAR~  323 (354)
                      .+.++||..|-+.-..-.-+    ..+   ..-.+.++.++++.|+++++||+----+-|.
T Consensus       146 ~~~~~vvID~l~~l~~~~~~----~~~---~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~  199 (277)
T d1cr2a_         146 LGCDVIILDHISIVVSASGE----SDE---RKMIDNLMTKLKGFAKSTGVVLVVICHLKNP  199 (277)
T ss_dssp             TCCSEEEEEEEEC-----------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC--
T ss_pred             CCCCEEEECCCCCCCCCCCC----CCH---HHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf             67625997054212034654----430---6778999999999765016552031035632


No 36 
>d1gtza_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.75  E-value=3.6  Score=18.23  Aligned_cols=18  Identities=28%  Similarity=0.392  Sum_probs=14.2

Q ss_pred             CCCEEEECC---CCEEEEEEE
Q ss_conf             686998735---530788897
Q gi|254780690|r  264 RATIIITNP---THYALALRY  281 (354)
Q Consensus       264 ~A~vvitNP---TH~AVAL~Y  281 (354)
                      ++|-+|-||   ||++|||+=
T Consensus        71 ~~~giIINpga~ThtSial~D   91 (149)
T d1gtza_          71 NHCGIVINPAAYSHTSVAILD   91 (149)
T ss_dssp             HCSEEEEECTTHHHHCHHHHH
T ss_pred             CCCEEEECCHHHHHHHHHHHH
T ss_conf             042557353887776577899


No 37 
>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]}
Probab=20.27  E-value=2.7  Score=19.19  Aligned_cols=64  Identities=20%  Similarity=0.242  Sum_probs=38.2

Q ss_pred             CCCEEEECC---CCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEE---CHHHHHHHHHHCCCCCCCC--
Q ss_conf             686998735---53078889768888888899807658999999999973997886---8899999997288989489--
Q gi|254780690|r  264 RATIIITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE---EPSLARSLFKQVPINSAIP--  335 (354)
Q Consensus       264 ~A~vvitNP---TH~AVAL~Y~~~~~~aP~vvaKG~~~~A~~Ir~~A~~~~Vpive---~~~LAR~Ly~~~~ig~~Ip--  335 (354)
                      ++|-+|-||   ||+++||+                        +--+..++|+||   +.+-||.-|+..-+-.++.  
T Consensus        69 ~~dgiIINPga~ThtS~al~------------------------DAl~~~~~P~iEVHlSNi~~RE~fR~~S~is~~~~g  124 (158)
T d2c4va1          69 DYEGIIINPGAFSHTSIAIA------------------------DAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGG  124 (158)
T ss_dssp             TEEEEEEECGGGGGTCHHHH------------------------HHHHHSSSCEEEEESSCTTSSCGGGSCCTTTTTSSE
T ss_pred             CCCEEEECCHHHEEEEEEHH------------------------HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf             95369964415324110118------------------------788753998899981686334555543425601238


Q ss_pred             -------HHHHHHHHHHHHHHHH
Q ss_conf             -------8999999999999973
Q gi|254780690|r  336 -------PVFYKAVAQLIYKIYH  351 (354)
Q Consensus       336 -------~~~y~aVA~il~~v~~  351 (354)
                             ..+..|+-.++..+-+
T Consensus       125 ~I~G~G~~gY~~Al~~l~~~l~~  147 (158)
T d2c4va1         125 VIMGFGPLGYNMALMAMVNILAE  147 (158)
T ss_dssp             EEESSTTHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH
T ss_conf             99638857899999999999985


Done!