RPSBLAST alignment for GI: 254780690 and conserved domain: TIGR01404

>gnl|CDD|130471 TIGR01404, FlhB_rel_III, type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. Length = 342

 Score =  194 bits (496), Expect = 2e-50
 Identities = 83/341 (24%), Positives = 165/341 (48%), Gaps = 5/341 (1%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE P+ KK+ DA  +G    S++  L S++L    +        ++       ++L 
Sbjct: 1   AEKTEKPTPKKLRDARKKGQVAKSKD--LTSAVLLLAGFFYLLSLASVFEEMLIALLILP 58

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                +    + +  +L+ L      +++P L + ++ G+ S L+Q   VL    +KP  
Sbjct: 59  LDFDDQPFAYA-LAQVLSGLLQLILTVLLPLLAIVLLAGVLSGLLQVGFVLATEALKPDL 117

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++   G+K+I+S+ +L   +KS +K++ +  I  + L      +          +   
Sbjct: 118 SKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKNYLKELFALPYCGLDGL-AP 176

Query: 188 AFFTVRKVLIM-ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
               + K+LI+  L F   + + D  +  + +   LKMSK E+K E K+  G+P IK+++
Sbjct: 177 IVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKR 236

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +  +  ++     R+T+++ NPTH A+ + Y   E   P+++ KG +  A  +R  
Sbjct: 237 RELHQEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAY 296

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           A E  IP+  +  LAR L++   +   IP   ++AVA+L+ 
Sbjct: 297 AEEAGIPVVRDIPLARQLYRTARVGQYIPEELFEAVAELLR 337