RPSBLAST alignment for GI: 254780690 and conserved domain: PRK08156

>gnl|CDD|181258 PRK08156, PRK08156, type III secretion system protein SpaS; Validated. Length = 361
 Score = 95.5 bits (238), Expect = 2e-20
 Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 28/328 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK+ D+  +G +  S++      +L  + YL+ F S       S    +LA 
Sbjct: 3   NKTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGS--FSEFMSIYKRILAD 60

Query: 69  ATQRKLEDIS---HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                + D      I+FL         +++IP LLL ++ G    L+Q   VL    +K 
Sbjct: 61  NFDINIGDYFLAVMIIFL---------KILIPFLLLCLLAGALPTLLQTRFVLATEAIKL 111

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI------SA 179
           +F  ++  +G+K+I+S+  +    K FVK +L   +I  +LT   F            + 
Sbjct: 112 NFSALNPVKGLKKIFSLRTV----KEFVKALLY--LIVFALTAYVFWKNYKKEIFSQLNG 165

Query: 180 NPHSILYHAFFTVRKVLIMI-LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           N    L   +  +   L++  L     + +LD    Y      +KM KQE+K E K+  G
Sbjct: 166 NIVG-LIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEG 224

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP IK++++   +  +  ++      + +I+ NPTH A+ + +       P +  +  N 
Sbjct: 225 NPEIKSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQ 284

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFK 326
            A  +R  A +  +P+  +  LAR L+K
Sbjct: 285 RALAVRAYAEKVGVPVVRDIKLARRLYK 312