RPSBLAST alignment for GI: 254780690 and conserved domain: PRK09108
>gnl|CDD|181653 PRK09108, PRK09108, type III secretion system protein HrcU; Validated. Length = 353
Score = 167 bits (425), Expect = 4e-42
Identities = 98/353 (27%), Positives = 172/353 (48%), Gaps = 37/353 (10%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D KTE P+ KK++DA +G S + A L +++L + + L
Sbjct: 3 DEKTEEPTEKKLKDARKDGEVAKSPDLTAAAVLLAALL--------VLTAAGSYLGDHLR 54
Query: 64 VLLASA-----TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
L+ +A +R L+ + L H A L++P + + GI Q +
Sbjct: 55 ALVRTALDFVSGERSLQALLA---ALHHFGAQALLLMLPFVAAAALAGILGTAPQTGLQI 111
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+L V P F ++ G+K+I+S+ +L+ +K VK +++ ++ +T +++ I
Sbjct: 112 SLKPVMPKFDALNPAAGLKKIFSLRSLIELVKMIVKAVVIAAVLWKGIT----SLMPLIV 167
Query: 179 ANPHSILYHAFFTVRKVL---IMILLFIATLTVLDIG---WSYHQWY--SKLKMSKQEIK 230
Y + + ++L +M LL +A L +G W +W +MSK E+K
Sbjct: 168 ----GAAYQSPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVK 223
Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
E K+S G+P IK +K +AR + +RA +++ NPTHYA+ALRY E+ P
Sbjct: 224 REHKESEGDPHIKGERKRLARELAFAPPRQRVARANVVVVNPTHYAVALRYAPDEHPLPR 283
Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
++AKG + A +R+ A+ IPI P +AR+L++ V ++ IP ++ VA
Sbjct: 284 VIAKGVDDGALALRRHAHALGIPIVGNPPVARALYR-VELDEPIPEELFETVA 335