RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein
FlhB [Candidatus Liberibacter asiaticus str. psy62]
(354 letters)
>gnl|CDD|180212 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 327 bits (841), Expect = 3e-90
Identities = 128/348 (36%), Positives = 206/348 (59%), Gaps = 1/348 (0%)
Query: 3 ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62
D D KTE P+ KK+E A +G P SRE + +S+LA L+ L FF ++ L
Sbjct: 2 AEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGML 61
Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
L + + + D + ++ L L L A ++P LLL ++ + + ++Q + +
Sbjct: 62 RALFSFD-REIIFDPNDVLSLFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKA 120
Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
+KP F +++ +G+KR++S LV +KS +K++LVG + L N +L +
Sbjct: 121 LKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFVLWSNLDELLSLAAEPLE 180
Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
+ L HA V K+L++++L + + +D+ + Q+ KLKM+KQE+KDE KQS G+P +
Sbjct: 181 AALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240
Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
K R + + R R +MM A +A ++ITNPTHYA+AL+Y + + APV+VAKG + +A K
Sbjct: 241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALK 300
Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
+R+IA EHN+PI E P LAR+L+ V I IP YKAVA+++ +Y
Sbjct: 301 IREIAREHNVPIVENPPLARALYATVEIGQEIPEELYKAVAEVLAYVY 348
>gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB. FlhB and its
functionally equivalent orthologs, from among a larger
superfamily of proteins involved in type III protein
export systems, are specifically involved in flagellar
protein export. The seed members are restricted and the
trusted cutoff is set high such that the proteins
gathered by this model play roles specifically related
to flagellar structures. Full-length homologs scoring
below the trusted cutoff are involved in peptide export
but not necessarily in the creation of flagella.
Length = 347
Score = 293 bits (753), Expect = 4e-80
Identities = 118/344 (34%), Positives = 197/344 (57%), Gaps = 1/344 (0%)
Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
KTE P+ KK+ A EGN P SRE + + +LA ++ L FF G+ + L S
Sbjct: 2 KTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVL-SLLFFGDGLADLLVVLMSFFLSF 60
Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
+ ++ +V + L++P +L ++ G+ S + Q + +KP F +
Sbjct: 61 ETSDILNLGSLVGIFFQSIREVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSK 120
Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
++ +G+KR++S+ +LV +KS +K+ LV + L + +L + + +
Sbjct: 121 INPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSLGELLSLSLYSLVQAITNFL 180
Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
+ +LI++LL + + V D + Q+ LKM+KQE+KDE+KQS G+P +K R + +
Sbjct: 181 DIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240
Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
R R +MM+ +A ++ITNPTHYA+AL+Y + APV+VAKG + +A K+++IA E
Sbjct: 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARE 300
Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+N+PI E P LAR+L++QV I IPP YKAVA+++ +Y K
Sbjct: 301 NNVPIVENPPLARALYRQVEIGQEIPPELYKAVAEVLAYVYKLK 344
>gnl|CDD|183864 PRK13109, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 358
Score = 284 bits (728), Expect = 3e-77
Identities = 135/356 (37%), Positives = 219/356 (61%), Gaps = 8/356 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MS++ ++KTE + +K+ DA+ +G+ P+SREA +F+S+L LI L FF +T
Sbjct: 1 MSDDTDKESKTEEATERKVRDAIEKGDIPVSREAPVFASMLGLLIALAFFARGQAAQLTG 60
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
DL LL LE + + LL+ ++L+A R ++P LL+ + G+ + L+Q +P L
Sbjct: 61 DLAPLLDDPRGFSLETGADAMLLLSRVALAAGRFLLPILLILAVCGLAASLLQNLPRFVL 120
Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI--- 177
+ ++P + R+S +G RI+ + V F+KS K + V ++ + L ++ +
Sbjct: 121 DRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFKFLSVSVVVLLLLRSERAKAVNAMFVD 180
Query: 178 -SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
S P IL A V V I ++ +A LD+ W+ W L+M+KQEIKDE KQ+
Sbjct: 181 PSQLPELILTVAIRLVSAVAIATIVLVA----LDLVWARFHWRRSLRMTKQEIKDEHKQA 236
Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+P +K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY ++EN AP++VAKGQ
Sbjct: 237 EGDPSVKARLRSLAQDRARNRMLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQ 296
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
+LIA K+R+IA E+ IP+ E+ LARSL+ V ++ IP FY+ VAQ++Y ++ +
Sbjct: 297 DLIALKIREIAEENGIPVIEDKPLARSLYDAVQVDQVIPAEFYRPVAQILYFLFSR 352
>gnl|CDD|130471 TIGR01404, FlhB_rel_III, type III secretion protein, YscU/HrpY
family. This model represents one of several families
of proteins related to bacterial flagellar biosynthesis
proteins and involved in bacterial type III protein
secretion systems. This family is homologous to, but
distinguished from, flagellar biosynthetic protein FlhB
(TIGRFAMs model TIGR00328). This model may not identify
all type III secretion system FlhB homologs.
Length = 342
Score = 194 bits (496), Expect = 2e-50
Identities = 83/341 (24%), Positives = 165/341 (48%), Gaps = 5/341 (1%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
KTE P+ KK+ DA +G S++ L S++L + ++ ++L
Sbjct: 1 AEKTEKPTPKKLRDARKKGQVAKSKD--LTSAVLLLAGFFYLLSLASVFEEMLIALLILP 58
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+ + + +L+ L +++P L + ++ G+ S L+Q VL +KP
Sbjct: 59 LDFDDQPFAYA-LAQVLSGLLQLILTVLLPLLAIVLLAGVLSGLLQVGFVLATEALKPDL 117
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
+++ G+K+I+S+ +L +KS +K++ + I + L + +
Sbjct: 118 SKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKNYLKELFALPYCGLDGL-AP 176
Query: 188 AFFTVRKVLIM-ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
+ K+LI+ L F + + D + + + LKMSK E+K E K+ G+P IK+++
Sbjct: 177 IVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKR 236
Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
+ + + + ++ R+T+++ NPTH A+ + Y E P+++ KG + A +R
Sbjct: 237 RELHQEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAY 296
Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
A E IP+ + LAR L++ + IP ++AVA+L+
Sbjct: 297 AEEAGIPVVRDIPLARQLYRTARVGQYIPEELFEAVAELLR 337
>gnl|CDD|183736 PRK12772, PRK12772, bifunctional flagellar biosynthesis protein
FliR/FlhB; Provisional.
Length = 609
Score = 191 bits (486), Expect = 3e-49
Identities = 108/350 (30%), Positives = 190/350 (54%), Gaps = 4/350 (1%)
Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
A D+KTE + KK DA +G S+E +L ++LAC + L ++ +
Sbjct: 261 ASDDKTEEATPKKKSDARKKGQIAKSKELALAITLLACTLVLSALGGYVANTLKETMIYF 320
Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
L + L S + L L +++ +P L M+FG+ + L+Q + +KP
Sbjct: 321 LNNYLNMNLNYNSLNSLAIITL-LRVAKIFLPVALPIMVFGVAANLLQTGFLFTKEPLKP 379
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
K+++ G KR++S+ +++ +K I +VG + L +NY +L+ + I+
Sbjct: 380 DLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYKFLQDNYLDILNLGNLYLPYII 439
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
V + I L + + V D + +Q+ L+M+KQE+K+E KQ G+P IK +
Sbjct: 440 TELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAK 499
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
K R +MM+ +AT+++TNPTH A+AL+Y + +++AP +VAKG + +A K+++
Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKE 559
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHK 352
IA E+++PI E LAR ++K+V I+ IP Y+AVA+ ++YK+ K
Sbjct: 560 IAKENDVPIIENKPLARLIYKKVEIDQEIPQDMYQAVAEILAIVYKLKKK 609
>gnl|CDD|171522 PRK12468, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 386
Score = 172 bits (436), Expect = 1e-43
Identities = 104/356 (29%), Positives = 189/356 (53%), Gaps = 8/356 (2%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
M+E D+ K+E P++ K+E A +G P SRE +S+L L + G S+
Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMAR 55
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF---MMFGIGSYLIQRIPV 117
L ++A +S+ +L + + + ++ L +F ++ + ++ +
Sbjct: 56 QLSAMVAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVL 115
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
+ +K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I
Sbjct: 116 FSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLI 175
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
+A P + L A + ++++L ++ + D+ + KL+M+KQ+I+DE K
Sbjct: 176 AAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQE 235
Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG
Sbjct: 236 GDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAG 295
Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
+A ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K
Sbjct: 296 AVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351
>gnl|CDD|181653 PRK09108, PRK09108, type III secretion system protein HrcU;
Validated.
Length = 353
Score = 167 bits (425), Expect = 4e-42
Identities = 98/353 (27%), Positives = 172/353 (48%), Gaps = 37/353 (10%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
D KTE P+ KK++DA +G S + A L +++L + + L
Sbjct: 3 DEKTEEPTEKKLKDARKDGEVAKSPDLTAAAVLLAALL--------VLTAAGSYLGDHLR 54
Query: 64 VLLASA-----TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
L+ +A +R L+ + L H A L++P + + GI Q +
Sbjct: 55 ALVRTALDFVSGERSLQALLA---ALHHFGAQALLLMLPFVAAAALAGILGTAPQTGLQI 111
Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
+L V P F ++ G+K+I+S+ +L+ +K VK +++ ++ +T +++ I
Sbjct: 112 SLKPVMPKFDALNPAAGLKKIFSLRSLIELVKMIVKAVVIAAVLWKGIT----SLMPLIV 167
Query: 179 ANPHSILYHAFFTVRKVL---IMILLFIATLTVLDIG---WSYHQWY--SKLKMSKQEIK 230
Y + + ++L +M LL +A L +G W +W +MSK E+K
Sbjct: 168 ----GAAYQSPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVK 223
Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
E K+S G+P IK +K +AR + +RA +++ NPTHYA+ALRY E+ P
Sbjct: 224 REHKESEGDPHIKGERKRLARELAFAPPRQRVARANVVVVNPTHYAVALRYAPDEHPLPR 283
Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
++AKG + A +R+ A+ IPI P +AR+L++ V ++ IP ++ VA
Sbjct: 284 VIAKGVDDGALALRRHAHALGIPIVGNPPVARALYR-VELDEPIPEELFETVA 335
>gnl|CDD|183700 PRK12721, PRK12721, secretion system apparatus protein SsaU;
Reviewed.
Length = 349
Score = 148 bits (375), Expect = 2e-36
Identities = 82/347 (23%), Positives = 148/347 (42%), Gaps = 11/347 (3%)
Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
MSE KTE P+ KK+ DA +G S E + + A L+Y L P +
Sbjct: 1 MSE------KTEKPTEKKLRDARKKGQVVKSVEITSGVQLAALLLYFLLE-GPSLVEAII 53
Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPVLN 119
L + + L + L ++ +G+ + Q P+L
Sbjct: 54 GLINSTIQLLNKPFLYALT---QILGAVLEVLLRFLLVLGAGLIVATVGTGIAQVGPLLA 110
Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
+ P ++++ K+I+S+ ++ KS +K++++ I L +
Sbjct: 111 SKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILSLIFAYLLHYYAPSFAYLPYC 170
Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
L + + +L +LD + ++ +LKMSK ++K E K S G+
Sbjct: 171 GAACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGD 230
Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
P IK +++ + + ++T ++ NPTH A+ L Y E P ++ KG++
Sbjct: 231 PEIKQKRRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQ 290
Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
A + K+A + IP+ E LAR+LFK+V IP ++ VA L+
Sbjct: 291 ALHIVKLAERNGIPVVENIPLARALFKEVECGDYIPETLFEPVAALL 337
>gnl|CDD|180519 PRK06298, PRK06298, type III secretion system protein; Validated.
Length = 356
Score = 119 bits (299), Expect = 1e-27
Identities = 83/344 (24%), Positives = 153/344 (44%), Gaps = 10/344 (2%)
Query: 10 KTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYS-VTSDLHVLLA 67
KTE + K++ DA +G S++ S + I++ ++L F S + S L +
Sbjct: 4 KTEKATPKRLRDARKKGQVAKSQDFPSAITFIVS--MFLTFSLSSFFAKHLGSFLVSIFK 61
Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
+A + V+ L + + +P L G+ + P + KP
Sbjct: 62 TAPTNHDPVV--TVYYLKNCLILILTASLPLLGAVAFVGVLVGFLIVGPTFSTEVFKPDI 119
Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL-- 185
K+ + + +K+ + + L+ +KS +KI I+ I L +++ P
Sbjct: 120 KKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVLKNRVPLIIETAGVPPLVTAQI 179
Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
+ K + I +F + VLD+ + H + +LKM K E+K E K + GNP IK R
Sbjct: 180 FKEILY--KAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGR 237
Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++
Sbjct: 238 RRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIA 297
Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
A ++ +PI LA L + IP Y+A+ +++ I
Sbjct: 298 EAEKYGVPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYI 341
>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 646
Score = 116 bits (291), Expect = 1e-26
Identities = 86/353 (24%), Positives = 179/353 (50%), Gaps = 22/353 (6%)
Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA--CLIYLL--FFFSPGIYSVTSDLH 63
+ +TE S ++ + +GN P S E +LA L+YL+ +FF Y + +H
Sbjct: 298 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIH 357
Query: 64 V------LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
+ + + L++ S +F L L + + G ++ + +G R
Sbjct: 358 GVGLRTDMSSESVTELLKNASTDLFTLLWPLLG---ITLVGAIIGNVAQVGFIFTPRALS 414
Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
N + ++P+FK+V + + L N KS K+ L+ + I +++++F +L
Sbjct: 415 FNFSRIRPNFKKV--------LPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSG 466
Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
+ + K+ +++ + + ++++D + +++ LKM+ E K E K+S
Sbjct: 467 EMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESD 526
Query: 238 GNPIIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
G+ ++ R++ +AR + + KM+ A ++ITNPTH+A+AL Y + AP+++AKG
Sbjct: 527 GDRSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGV 586
Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
+ A + +IA E+ +P E+ AR L+++V + + +P FY+A+A ++ ++
Sbjct: 587 DDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRL 639
>gnl|CDD|181258 PRK08156, PRK08156, type III secretion system protein SpaS;
Validated.
Length = 361
Score = 95.5 bits (238), Expect = 2e-20
Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 28/328 (8%)
Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
NKTE P+ KK+ D+ +G + S++ +L + YL+ F S S +LA
Sbjct: 3 NKTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGS--FSEFMSIYKRILAD 60
Query: 69 ATQRKLEDIS---HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
+ D I+FL +++IP LLL ++ G L+Q VL +K
Sbjct: 61 NFDINIGDYFLAVMIIFL---------KILIPFLLLCLLAGALPTLLQTRFVLATEAIKL 111
Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI------SA 179
+F ++ +G+K+I+S+ + K FVK +L +I +LT F +
Sbjct: 112 NFSALNPVKGLKKIFSLRTV----KEFVKALLY--LIVFALTAYVFWKNYKKEIFSQLNG 165
Query: 180 NPHSILYHAFFTVRKVLIMI-LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
N L + + L++ L + +LD Y +KM KQE+K E K+ G
Sbjct: 166 NIVG-LIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEG 224
Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
NP IK++++ + + ++ + +I+ NPTH A+ + + P + + N
Sbjct: 225 NPEIKSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQ 284
Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFK 326
A +R A + +P+ + LAR L+K
Sbjct: 285 RALAVRAYAEKVGVPVVRDIKLARRLYK 312
>gnl|CDD|129871 TIGR00789, flhB_rel, flhB C-terminus-related protein. This model
describes a short protein (80-93 residues) homologous to
the C-terminus of the flagellar biosynthetic protein
FlhB. It is found so far only in species that also have
FlhB. In a phylogenetic tree based on alignment of both
this family and the homologous region of FlhB and its
homologs, the members of this family form a monophyletic
set.
Length = 82
Score = 64.4 bits (157), Expect = 4e-11
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
A+AL Y ++ AP +VA G +A+++ +IA +H IPI E+P L L K + ++
Sbjct: 1 KIKKAVALSYDTGKDKAPKVVASGVGEVAERIIEIAKKHGIPIVEDPDLVDVLLK-LDLD 59
Query: 332 SAIPPVFYKAVAQLIYKIY 350
IP Y+ VA++ +Y
Sbjct: 60 DEIPEELYEVVAEIFAFLY 78
>gnl|CDD|183645 PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A;
Reviewed.
Length = 800
Score = 32.6 bits (75), Expect = 0.17
Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 28/182 (15%)
Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS---------LS 90
ILA L+ + F P I + + ++ A L + H+S L
Sbjct: 481 ILASLVVVFGLF-PNILT-----NSIIEPAVSAILPTLIDGEDFDVHISLWHGFTPELLM 534
Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPV-LNLNHVKPSFKRVSLREGIKRIYSINNLV--N 147
++I G+LLF+ F L QR P L LN+ SL K Y +
Sbjct: 535 TLGIIILGILLFLTFSKWVKLYQRFPKKLTLNY----LYDRSLDGLEKGSYKMTRSYMTG 590
Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
+++ ++ I I+ + + F + I + +V+++ +L +A
Sbjct: 591 YLRDYLVYIFSALILLLGFVTIFSVAFSFNFKDVAPI------RIYEVVLVAVLLVAAFA 644
Query: 208 VL 209
+L
Sbjct: 645 IL 646
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 29.8 bits (67), Expect = 1.2
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
DE+K S G K Q+ + R R M RA I L R +Q +APV
Sbjct: 32 DEVKGSIGENEDKEEQEPVQRPRKTTPYMTKYERARI---------LGTRALQISMNAPV 82
Query: 291 LV 292
+V
Sbjct: 83 MV 84
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 28.1 bits (63), Expect = 3.2
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
+KM K +Y + IP+F E R L ++ +S++P
Sbjct: 201 RKMSK-SYGNVIPLFAEQEKLRKLIFKIKTDSSLP 234
>gnl|CDD|129926 TIGR00846, caca2, calcium/proton exchanger. This model is
generated from the calcium ion/proton exchangers of the
CacA family.
Length = 365
Score = 27.4 bits (61), Expect = 5.6
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
Query: 22 ALNEGNAPISREASLFSSILACLIYLL--FFFSPGIYSVTSDLHVLLASATQR-KLEDIS 78
AL EG + R ASL SIL+ L+ +L F GI ++ QR
Sbjct: 89 ALGEGKVEVVR-ASLLGSILSNLLLVLGLSLFLGGIKNIRE----------QRFNRGAAQ 137
Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
LL LS LV+P L G S L
Sbjct: 138 VNSALLLLAILS---LVLPLALPAGKPGQDSILGL 169
>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit.
In several thermophilic species (Methanobacterium
thermoautotrophicum, Methanococcus jannaschii, Aquifex
aeolicus), the large subunit appears split, at different
points, into two separate genes.
Length = 1050
Score = 27.3 bits (61), Expect = 6.6
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 300 AKKMRKIAYEHNIPIFEEPSLAR 322
K+R+ A ++ +P+ + A
Sbjct: 1022 GYKIRREALDYGVPLITTLNTAE 1044
>gnl|CDD|148180 pfam06419, COG6, Conserved oligomeric complex COG6. COG6 is a
component of the conserved oligomeric golgi complex,
which is composed of eight different subunits and is
required for normal golgi morphology and localisation.
Length = 615
Score = 26.9 bits (60), Expect = 8.0
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 134 EGIKRIYSINNLVNFMKS-FVKIILVGTIITISLTE 168
E +Y I NL+ F +S F K++ + + +L +
Sbjct: 327 EDAITLYKIANLLEFYRSMFSKLLGDDSNLVETLKD 362
>gnl|CDD|177669 PLN00035, PLN00035, histone H4; Provisional.
Length = 103
Score = 26.7 bits (59), Expect = 9.6
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 124 KPSFKRVSLREGIKRIYSI--NNLVNFMKSFVKIILVGTII 162
KP+ +R++ R G+KRI + +K F++ ++ +
Sbjct: 32 KPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVT 72
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.137 0.389
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,654,995
Number of extensions: 364986
Number of successful extensions: 1264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1233
Number of HSP's successfully gapped: 49
Length of query: 354
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 260
Effective length of database: 3,963,321
Effective search space: 1030463460
Effective search space used: 1030463460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.1 bits)