RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] (354 letters) >g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]} Length = 100 Score = 113 bits (284), Expect = 2e-26 Identities = 31/93 (33%), Positives = 52/93 (55%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ Sbjct: 4 LANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIED 63 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 LARSL K + I F++ VAQLI Sbjct: 64 IPLARSLDKNIHKGQYITEDFFEPVAQLIRIAI 96 >g3c01.1 d.367.1.1 (A:239-258,E:259-346) Surface presentation of antigens protein SpaS {Salmonella typhimurium [TaxId: 90371]} Length = 108 Score = 109 bits (275), Expect = 3e-25 Identities = 20/96 (20%), Positives = 39/96 (40%) Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 ++ + +I+ NPTH + + + P++ N A +R A + +P+ Sbjct: 4 SEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPV 63 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 + LARSLFK + V +L+ + Sbjct: 64 IVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWLE 99 >g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]} Length = 102 Score = 109 bits (275), Expect = 3e-25 Identities = 24/96 (25%), Positives = 39/96 (40%) Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 + + +++ NPTH A+ + + AP + N A +RK A E IP Sbjct: 5 SEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPT 64 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 + LAR L+K S + V +LI + Sbjct: 65 VRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLE 100 >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 163 Score = 27.8 bits (61), Expect = 1.3 Identities = 9/48 (18%), Positives = 21/48 (43%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321 + + N+ PVL +++K +++ ++ IP +E P Sbjct: 100 AEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPTYERPEDV 147 >d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA {Bacillus subtilis [TaxId: 1423]} Length = 274 Score = 27.4 bits (61), Expect = 1.6 Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 2/55 (3%) Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRA--TIIITNPTHYALALRYIQT 284 +KQ+ +K + + K A +T P L++ + Sbjct: 172 AVKQTISRSAVKCLSPAKRGRLLTEKTAFALQNKDKVKPLTPPDRPVLSIEFANY 226 >d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Score = 27.0 bits (60), Expect = 2.1 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 5/45 (11%) Query: 270 TNPTHYALALRYIQTEND-APVL----VAKGQNLIAKKMRKIAYE 309 P H L+++ + + P+L +L K+ +K + Sbjct: 11 RRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLD 55 >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 Score = 25.3 bits (55), Expect = 8.8 Identities = 8/73 (10%), Positives = 24/73 (32%), Gaps = 4/73 (5%) Query: 204 ATLTVLD-IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ---KSIARSRIRHKMM 259 A L+ + + W+ + + M+ +++K+ Y ++ + + Sbjct: 20 ALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIF 79 Query: 260 EATSRATIIITNP 272 + A N Sbjct: 80 MELNDAWSEFENQ 92 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.137 0.389 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,252,850 Number of extensions: 57591 Number of successful extensions: 219 Number of sequences better than 10.0: 1 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 22 Length of query: 354 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 268 Effective length of database: 1,226,816 Effective search space: 328786688 Effective search space used: 328786688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 53 (24.4 bits)