BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein
FlhB [Candidatus Liberibacter asiaticus str. psy62]
         (354 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 354

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/354 (100%), Positives = 354/354 (100%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS
Sbjct: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL
Sbjct: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN
Sbjct: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP
Sbjct: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA
Sbjct: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI
Sbjct: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354


>gi|254781039|ref|YP_003065452.1| putative glycerol-3-phosphate dehydrogenase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 329

 Score = 23.5 bits (49), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 270 TNPTHYALALRYIQT---ENDAPVLVAKG-----QNLIAKKMRKIAYEHNIPIFEEPSLA 321
           T+   Y  AL +      E+   ++ +KG       L++    K+   H+I +   P  A
Sbjct: 82  TSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGFA 141

Query: 322 RSLFKQVPIN 331
           R + + +P+ 
Sbjct: 142 RDIAQGLPVG 151


>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 458

 Score = 23.1 bits (48), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
           FF +  +L+ ++L +  + V  + WSY++
Sbjct: 22  FFIITALLMPVMLGVGGMLVDVVRWSYYE 50


>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 509

 Score = 23.1 bits (48), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 130 VSLREGIKRIYSINNL 145
           +S+ +GI R+Y +NN+
Sbjct: 32  LSIGDGIARVYGLNNI 47


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.137    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,331
Number of Sequences: 1233
Number of extensions: 8680
Number of successful extensions: 35
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 12
length of query: 354
length of database: 328,796
effective HSP length: 75
effective length of query: 279
effective length of database: 236,321
effective search space: 65933559
effective search space used: 65933559
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)