Query         gi|254780691|ref|YP_003065104.1| hypothetical protein CLIBASIA_02890 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 55
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 14:30:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780691.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1au1_A Interferon-beta; helic  28.7      43  0.0013   15.6   2.5   21   34-54    119-139 (166)
  2 >1wu3_I Interferon beta, IFN-b  25.9      52  0.0015   15.2   2.5   21   34-54    114-134 (161)
  3 >1b5l_A Interferon TAU; cytoki  25.4      53  0.0016   15.1   2.5   21   34-54    117-137 (172)
  4 >1rh2_A Interferon-alpha 2B; c  18.3      76  0.0023   14.2   2.1   20   35-54    117-136 (165)
  5 >1cmk_I CAMP-dependent protein   9.4 1.1E+02  0.0034   13.3   0.9   14    9-22     11-24  (26)
  6 >1hm6_A Annexin 1; phospholipi   8.7      78  0.0023   14.2  -0.2   22   24-50     23-46  (79)
  7 >2h7g_X DNA topoisomerase 1; t   8.3      45  0.0013   15.5  -1.6   23   19-47     25-47  (69)
  8 >1x9m_A DNA polymerase; DNA pl   8.2 1.4E+02  0.0042   12.8   1.0   23   29-53      4-27  (56)
  9 >1zl9_A GST class-sigma, gluta   7.9 1.6E+02  0.0048   12.5   1.1   21   35-55     29-49  (56)
 10 >3e2c_A Bacterioferritin; DIIR   7.5 1.7E+02  0.0049   12.4   1.1   15   28-42     63-77  (84)

No 1  
>>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET: BGC G6D; 2.20A {Homo sapiens} (A:)
Probab=28.67  E-value=43  Score=15.61  Aligned_cols=21  Identities=38%  Similarity=0.819  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             112999999999999776404
Q gi|254780691|r   34 NIGLQRYYKRVKTVIRAKKYQ   54 (55)
Q Consensus        34 niglqryykrvktvirakkyq   54 (55)
                      +..+.+||.|.......|+|-
T Consensus       119 ~l~lkkYF~ri~~yLk~K~yS  139 (166)
T 1au1_A          119 SLHLKRYYGRILHYLKAKEYS  139 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCC
T ss_conf             279999998999998658997


No 2  
>>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} (I:)
Probab=25.85  E-value=52  Score=15.17  Aligned_cols=21  Identities=33%  Similarity=0.657  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             112999999999999776404
Q gi|254780691|r   34 NIGLQRYYKRVKTVIRAKKYQ   54 (55)
Q Consensus        34 niglqryykrvktvirakkyq   54 (55)
                      +.-+.+||.|.....+.|+|-
T Consensus       114 ~l~lkkYF~rI~~yLk~K~yS  134 (161)
T 1wu3_I          114 ALHLKSYYWRVQRYLKLMKYN  134 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCC
T ss_conf             369999999999998727997


No 3  
>>1b5l_A Interferon TAU; cytokine; 2.10A {Pichia pastoris} (A:)
Probab=25.36  E-value=53  Score=15.09  Aligned_cols=21  Identities=14%  Similarity=0.523  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             112999999999999776404
Q gi|254780691|r   34 NIGLQRYYKRVKTVIRAKKYQ   54 (55)
Q Consensus        34 niglqryykrvktvirakkyq   54 (55)
                      +..+.+||.|.......|+|-
T Consensus       117 ~l~lkkYF~rI~~yLk~K~yS  137 (172)
T 1b5l_A          117 IVTVKKYFQGIYDYLQEKGYS  137 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCC
T ss_conf             479999999999999857997


No 4  
>>1rh2_A Interferon-alpha 2B; cytokine, anti-viral, immunomodulator, 4 helix bundle; 2.90A {Homo sapiens} (A:)
Probab=18.28  E-value=76  Score=14.25  Aligned_cols=20  Identities=25%  Similarity=0.818  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHC
Q ss_conf             12999999999999776404
Q gi|254780691|r   35 IGLQRYYKRVKTVIRAKKYQ   54 (55)
Q Consensus        35 iglqryykrvktvirakkyq   54 (55)
                      ..+.+||.|.......|+|-
T Consensus       117 L~lk~YF~rI~~yLk~K~yS  136 (165)
T 1rh2_A          117 LAVRKYFQRITLYLKEKKYS  136 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCC
T ss_conf             89999999999998738997


No 5  
>>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens} (I:)
Probab=9.42  E-value=1.1e+02  Score=13.28  Aligned_cols=14  Identities=43%  Similarity=0.686  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             56545569999975
Q gi|254780691|r    9 RTSHVRGVHDILLR   22 (55)
Q Consensus         9 rtshvrgvhdillr   22 (55)
                      ||..-..+||||..
T Consensus        11 rtgrrnaihdil~~   24 (26)
T 1cmk_I           11 RTGRRNAIHDILXX   24 (26)
T ss_pred             CCCCHHHHHHHHHC
T ss_conf             75425579998860


No 6  
>>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} (A:17-35,A:273-332)
Probab=8.72  E-value=78  Score=14.18  Aligned_cols=22  Identities=59%  Similarity=0.764  Sum_probs=14.1

Q ss_pred             HHHH-H-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6889-7-6323311299999999999977
Q gi|254780691|r   24 SFFL-K-LQNMKNIGLQRYYKRVKTVIRA   50 (55)
Q Consensus        24 sffl-k-lqnmkniglqryykrvktvira   50 (55)
                      -||. | -|.||.||.     |-||.||.
T Consensus        23 mffaeklhqamkgigt-----rhktliri   46 (79)
T 1hm6_A           23 MFFAEKLHQAMKGIGT-----RHKTLIRI   46 (79)
T ss_dssp             HHHHHHHHHHHSSSSC-----CHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCC-----CCHHHHHH
T ss_conf             8999999999607687-----73699999


No 7  
>>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 1a41_A (X:97-146,X:198-216)
Probab=8.32  E-value=45  Score=15.50  Aligned_cols=23  Identities=35%  Similarity=0.765  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99755688976323311299999999999
Q gi|254780691|r   19 ILLRSSFFLKLQNMKNIGLQRYYKRVKTV   47 (55)
Q Consensus        19 illrssfflklqnmkniglqryykrvktv   47 (55)
                      .|+..|||..      +|--||+|.-.||
T Consensus        25 mLmETsFfIR------~GK~~Y~ken~TV   47 (69)
T 2h7g_X           25 MLMETMFFIR------FGKMKYLKENETV   47 (69)
T ss_dssp             HHHHHHHCCC------CCCHHHHHHHCCC
T ss_pred             HHHHHHHCEE------CCCCCCCCCCCCC
T ss_conf             9999862452------5881011026873


No 8  
>>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} (A:498-553)
Probab=8.23  E-value=1.4e+02  Score=12.76  Aligned_cols=23  Identities=30%  Similarity=0.284  Sum_probs=16.8

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf             632331129-9999999999977640
Q gi|254780691|r   29 LQNMKNIGL-QRYYKRVKTVIRAKKY   53 (55)
Q Consensus        29 lqnmknigl-qryykrvktvirakky   53 (55)
                      ..|++.+|+ .|  +.+||+|-|--|
T Consensus         4 t~N~~~~Gl~sR--~~aKT~iYaflY   27 (56)
T 1x9m_A            4 TKNQIAAELPTR--DNAKTFIYGFLY   27 (56)
T ss_dssp             HHHHHHSCCSSH--HHHHHHHHHHHT
T ss_pred             CCCHHHHCCCCC--HHHHHHHHHHHC
T ss_conf             331555244542--177777788741


No 9  
>>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GTT; 2.01A {Caenorhabditis elegans} (A:152-207)
Probab=7.88  E-value=1.6e+02  Score=12.46  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCC
Q ss_conf             129999999999997764049
Q gi|254780691|r   35 IGLQRYYKRVKTVIRAKKYQE   55 (55)
Q Consensus        35 iglqryykrvktvirakkyqe   55 (55)
                      -.|+.++.||...-+-|+|.+
T Consensus        29 P~L~~~~~rv~~~P~Ik~yl~   49 (56)
T 1zl9_A           29 PELKAHAEKIQAIPQIKKWIE   49 (56)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHH
T ss_conf             799999999985999999999


No 10 
>>3e2c_A Bacterioferritin; DIIRON site, iron storage, metal-binding, heme, iron, oxidoreductase; HET: HEM; 1.80A {Escherichia coli} PDB: 2vxi_A* 1bfr_A* 1bcf_A* 2htn_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* (A:75-158)
Probab=7.54  E-value=1.7e+02  Score=12.41  Aligned_cols=15  Identities=33%  Similarity=0.740  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             763233112999999
Q gi|254780691|r   28 KLQNMKNIGLQRYYK   42 (55)
Q Consensus        28 klqnmkniglqryyk   42 (55)
                      .+..++.+|+|.|-.
T Consensus        63 ql~lI~~~G~~nYl~   77 (84)
T 3e2c_A           63 ELDLIQKMGLQNYLQ   77 (84)
T ss_dssp             HHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999977898999


Done!