RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780691|ref|YP_003065104.1| hypothetical protein
CLIBASIA_02890 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>gnl|CDD|177222 MTH00167, COX1, cytochrome c oxidase subunit I; Provisional.
          Length = 512

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 12  HVRGVHDILLRSSFFLKLQNMKNIGLQRYY 41
           H+ GV  IL   +F   + NMK  G+ +Y 
Sbjct: 151 HLAGVSSILGSINFITTIINMKPPGITQYQ 180


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.137    0.377 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 632,037
Number of extensions: 22327
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 5
Length of query: 55
Length of database: 6,263,737
Length adjustment: 28
Effective length of query: 27
Effective length of database: 5,658,685
Effective search space: 152784495
Effective search space used: 152784495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)