HHsearch alignment for GI: 254780693 and conserved domain: COG0568
>COG0568 RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription].
Probab=94.55 E-value=0.099 Score=31.50 Aligned_cols=50 Identities=36% Similarity=0.444 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCCHHH
Q ss_conf 998999999999-----87999789999949998899999999999807-997899
Q gi|254780693|r 174 LTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD-AVNRIQ 223 (235)
Q Consensus 174 LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg-~~nR~q 223 (235)
T Consensus 280 Lt~rE~~Vi~~R~gl~~~~~~TLeevg~~~~vsrERvRQIE~kAl~KLr~~~~~~~ 335 (342)
T COG0568 280 LTERERRVIRLRFGLDDGEPKTLEELGEEFGISRERVRQIEAKALRKLRRHPERSA 335 (342)
T ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999955679995519999989598699999999999999987063222