HHsearch alignment for GI: 254780693 and conserved domain: COG1191
>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription].
Probab=95.92 E-value=0.023 Score=36.08 Aligned_cols=45 Identities=40% Similarity=0.400 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 49989999999998-7999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 196 ~L~EREk~Vl~l~y~eelt~kEI~~~LgISes~VSql~kkai~kLr 241 (247)
T COG1191 196 PLPEREKLVLVLRYKEELTQKEIAEVLGISESRVSRLHKKAIKKLR 241 (247)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6689999999999970157999999949149899999999999999