HHsearch alignment for GI: 254780693 and conserved domain: PRK05949

>PRK05949 RNA polymerase sigma factor; Validated.

Probab=96.34  E-value=0.054  Score=33.36  Aligned_cols=47  Identities=21%  Similarity=0.227  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             49989999999998-----799978999994999889999999999980799
Q gi|254780693|r  173 NLTERETSCLQLAG-----DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV  219 (235)
Q Consensus       173 ~LT~RE~evL~l~a-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~  219 (235)
T Consensus       266 ~L~~REr~Ii~~RfGl~~~~~~TL~EIg~~lgiSrERVRQIE~rAL~KLR~~  317 (327)
T PRK05949        266 ELTPQQREVLTLRFGLEDGKELSLAKVGQRLNLSRERVRQLEHQALAHLRRR  317 (327)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf             6999999999997189996985799999998959999999999999998625