HHsearch alignment for GI: 254780693 and conserved domain: PRK06288

>PRK06288 RNA polymerase sigma factor WhiG; Reviewed.
Probab=96.74  E-value=0.0041  Score=41.36  Aligned_cols=45  Identities=29%  Similarity=0.393  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             499899999999-987999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       208 ~L~erEr~Il~lry~e~~Tl~eIa~~lgiS~eRVrQie~~AL~kLR  253 (261)
T PRK06288        208 TLPEREKKVITLYYYEDLTLKEIGEVLGVTESRISQIHTKAVLQLR  253 (261)
T ss_pred             CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             0899999999998079988999999979789999999999999999