HHsearch alignment for GI: 254780693 and conserved domain: PRK06288
>PRK06288 RNA polymerase sigma factor WhiG; Reviewed.
Probab=96.74 E-value=0.0041 Score=41.36 Aligned_cols=45 Identities=29% Similarity=0.393 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999-987999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 208 ~L~erEr~Il~lry~e~~Tl~eIa~~lgiS~eRVrQie~~AL~kLR 253 (261)
T PRK06288 208 TLPEREKKVITLYYYEDLTLKEIGEVLGVTESRISQIHTKAVLQLR 253 (261)
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 0899999999998079988999999979789999999999999999