HHsearch alignment for GI: 254780693 and conserved domain: PRK06596
>PRK06596 RNA polymerase factor sigma-32; Reviewed.
Probab=96.67 E-value=0.027 Score=35.55 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 49989999999998---7999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAG---DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a---~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 230 ~L~~REr~Il~~Ry~~d~~~TL~EIg~~lgiSrERVRQIe~kAL~KLR 277 (284)
T PRK06596 230 TLDERSRDIIEARWLDDDKSTLQELAAEYGVSAERIRQIEKNAMKKLK 277 (284)
T ss_pred HCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 099999999999767999948999999979799999999999999999