HHsearch alignment for GI: 254780693 and conserved domain: PRK06811

>PRK06811 RNA polymerase factor sigma-70; Validated.

Probab=97.78  E-value=7.2e-05  Score=53.89  Aligned_cols=45  Identities=29%  Similarity=0.338  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             44998999999999-8799978999994999889999999999980
Q gi|254780693|r  172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       127 ~~L~~~~r~v~~l~~~~~~s~~EIA~~l~is~~tVk~rl~Rar~~L  172 (185)
T PRK06811        127 NDLKKLDREIFIKRYLLGESIEEIAKKLGLTRSAIDNRLSRGRKKL  172 (185)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             4899999999999999499999999998929999999999999999