HHsearch alignment for GI: 254780693 and conserved domain: PRK06930

>PRK06930 positive control sigma-like factor; Validated.

Probab=98.20  E-value=3.2e-06  Score=63.50  Aligned_cols=46  Identities=35%  Similarity=0.405  Sum_probs=42.4

Q ss_pred             CCCHHHHHH-HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             499899999-9999879997899999499988999999999998079
Q gi|254780693|r  173 NLTERETSC-LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA  218 (235)
Q Consensus       173 ~LT~RE~ev-L~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~  218 (235)
T Consensus       114 ~Lt~rErevfll~~~~glsy~EIA~~L~Is~~tV~~~l~RA~~Ki~~  160 (170)
T PRK06930        114 VLTEREKEVYLMHRGYGLSYSEIAAYLNIKKSTVQSMIERAEKKIAK  160 (170)
T ss_pred             HCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             56988889998897618889999999798899999999999999999