HHsearch alignment for GI: 254780693 and conserved domain: PRK06986
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated.
Probab=96.66 E-value=0.0058 Score=40.31 Aligned_cols=45 Identities=31% Similarity=0.338 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 49989999999998-7999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 183 ~L~~rEr~Ii~l~y~~~~tl~eIa~~lgiS~eRVrQie~~AL~kLR 228 (234)
T PRK06986 183 KLPEREQLVLSLYYDEELNLKEIGAVLGVSESRVSQIHSQAIKRLR 228 (234)
T ss_pred HCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 0999999999987389989999999979789999999999999999