HHsearch alignment for GI: 254780693 and conserved domain: PRK07122
>PRK07122 RNA polymerase sigma factor SigF; Reviewed.
Probab=96.96 E-value=0.0025 Score=42.92 Aligned_cols=45 Identities=33% Similarity=0.464 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 214 ~L~eREr~Vi~lry~e~~Tl~EIa~~lGiSreRVrQIe~~AL~KLR 259 (263)
T PRK07122 214 ALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLARLR 259 (263)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 5999999999999569998999999989799999999999999999