HHsearch alignment for GI: 254780693 and conserved domain: PRK07406
>PRK07406 RNA polymerase sigma factor RpoD; Validated.
Probab=95.93 E-value=0.034 Score=34.83 Aligned_cols=54 Identities=30% Similarity=0.345 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHH---CC--CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 449989999999998---79--9978999994999889999999999980799789999
Q gi|254780693|r 172 RNLTERETSCLQLAG---DG--YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 (235)
Q Consensus 172 ~~LT~RE~evL~l~a---~G--~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qav 225 (235)
T Consensus 322 ~~L~eREr~II~lRfGL~dg~~~TL~EIg~~lgISRERVRQIE~rAL~KLR~p~r~~~L 380 (385)
T PRK07406 322 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVL 380 (385)
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 64999999999997589999964699999897959999999999999996771778999