HHsearch alignment for GI: 254780693 and conserved domain: PRK07406

>PRK07406 RNA polymerase sigma factor RpoD; Validated.
Probab=95.93  E-value=0.034  Score=34.83  Aligned_cols=54  Identities=30%  Similarity=0.345  Sum_probs=47.0

Q ss_pred             CCCCHHHHHHHHHHH---CC--CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             449989999999998---79--9978999994999889999999999980799789999
Q gi|254780693|r  172 RNLTERETSCLQLAG---DG--YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI  225 (235)
Q Consensus       172 ~~LT~RE~evL~l~a---~G--~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qav  225 (235)
T Consensus       322 ~~L~eREr~II~lRfGL~dg~~~TL~EIg~~lgISRERVRQIE~rAL~KLR~p~r~~~L  380 (385)
T PRK07406        322 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVL  380 (385)
T ss_pred             HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             64999999999997589999964699999897959999999999999996771778999