HHsearch alignment for GI: 254780693 and conserved domain: PRK07598

>PRK07598 RNA polymerase sigma factor SigC; Validated.
Probab=96.02  E-value=0.031  Score=35.06  Aligned_cols=53  Identities=32%  Similarity=0.412  Sum_probs=46.0

Q ss_pred             CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             4998999999999-----8799978999994999889999999999980799789999
Q gi|254780693|r  173 NLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI  225 (235)
Q Consensus       173 ~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qav  225 (235)
T Consensus       345 ~L~~REr~IL~lRfGL~dg~~~TL~EIG~~lgISRERVRQIE~kAL~KLR~p~r~~~L  402 (410)
T PRK07598        345 DLTSRERDVIRMRFGLADGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRI  402 (410)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             6999999999996489997966899999897969999999999999996773778999