HHsearch alignment for GI: 254780693 and conserved domain: PRK07670

>PRK07670 RNA polymerase sigma factor SigD; Validated.

Probab=96.97  E-value=0.0084  Score=39.16  Aligned_cols=45  Identities=29%  Similarity=0.356  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       197 ~L~~rEr~Vl~l~y~e~~Tl~eIa~~lgvS~erVrQi~~~AL~kLr  242 (250)
T PRK07670        197 ELNEKEQLVISLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLK  242 (250)
T ss_pred             CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             5899999999997489868999999989799999999999999999