HHsearch alignment for GI: 254780693 and conserved domain: PRK09047
>PRK09047 RNA polymerase factor sigma-70; Validated.
Probab=97.98 E-value=1.8e-05 Score=58.10 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 106 ~Lp~~qR~vl~L~~~egls~~EIA~~l~is~~tVk~~l~RAr~~Lr 151 (161)
T PRK09047 106 KLPARQREAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLA 151 (161)
T ss_pred HCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 1999999998999998779999999989699999999999999999